RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] (431 letters) >gnl|CDD|30060 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.. Length = 374 Score = 328 bits (842), Expect = 2e-90 Identities = 141/374 (37%), Positives = 212/374 (56%), Gaps = 2/374 (0%) Query: 47 ALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLD 106 A + D G + PG++D V L EY + + + +K A AGG T+++ MP + +D Sbjct: 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVID 60 Query: 107 EYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQ 166 ++ + ++ V P LT ++G+E++E+ L E G V F I D + Sbjct: 61 NPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGFSDDGKPIQDAE 120 Query: 167 VLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLI 226 +L +++YA ML+ + + D L GV+NEG +A+ LGL GIP +ET+ +ARDL + Sbjct: 121 LLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLPGIPPEAETIMVARDLEL 180 Query: 227 AQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPP 286 A+ TG H +S +S+ LI+ AKA T ++ ++L+L++ +E Y++ KV PP Sbjct: 181 AEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPP 240 Query: 287 LRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH 346 LRSE +R +++EAL+ G ID I SDH P + K LPFAEA G IGLET L L Sbjct: 241 LRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLV 300 Query: 347 -GQQISLKKLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405 G ++L LIRALST PA+I LP G L+ G AD+ L D + +W V + S KNT Sbjct: 301 KGGLLTLPDLIRALSTNPAKILGLPPGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNT 360 Query: 406 VFDKEFFTGKVVRT 419 FD + G+V+ T Sbjct: 361 PFDGQKLKGRVLAT 374 >gnl|CDD|30393 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]. Length = 430 Score = 318 bits (817), Expect = 2e-87 Identities = 155/425 (36%), Positives = 237/425 (55%), Gaps = 8/425 (1%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 ++ N R++DP D EV I++++G I A G N + + A I D GL+ +PG++D Sbjct: 4 LIKNARVVDPGED--EVADILIKDGKIAAIGK---NLEPTSGAEIIDAKGLLVLPGLVDL 58 Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124 V E+ + T S+ A AGG+T+++ MP +D ++ LE + KS++ Sbjct: 59 HVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPN-TKPPIDTAEALEDKLERAKGKSVV 117 Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVAL 184 + LT GK E G F+ D VL +++YA L A++ + Sbjct: 118 DYAFYGGLTKGNLGKL-ELTERGVEAGFKGFMDDSTGALDDDVLEEALEYAAELGALILV 176 Query: 185 DTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQS 244 D L + GV+NEG+ A LGL G P I+E +ARDL +A+ TG H IS +S Sbjct: 177 HAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKES 236 Query: 245 IALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGD 304 + LI+ AKA + T ++ ++L+L+E D+E +L KV PPLR E +R ++ EAL+ G Sbjct: 237 VELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGV 296 Query: 305 IDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPA 364 ID+I SDH P ++ K LPF EA G GLET L L L ++SL++L+ LST PA Sbjct: 297 IDVIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPA 356 Query: 365 QIFNLP-GGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISG 423 +IF LP G ++ G AD+ L+D + +WT++A+++ S KN+ F+ G+VV T + G Sbjct: 357 RIFGLPPKGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFEGFELKGRVVATILRG 416 Query: 424 KQVYT 428 K VY Sbjct: 417 KVVYE 421 >gnl|CDD|30058 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.. Length = 447 Score = 165 bits (420), Expect = 2e-41 Identities = 121/443 (27%), Positives = 192/443 (43%), Gaps = 31/443 (6%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 V+ N R++ P + I V+ G I A G D N + + D GLV +PG+ID Sbjct: 3 VIKNGRVVTPDGVRE--ADIAVKGGKIAAIGPDIAN---TEAEEVIDAGGLVVMPGLIDT 57 Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124 V + + T +K A AGGIT+II MPL ++ LE + K + Sbjct: 58 HVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHV 117 Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSF--------IQSPMSIHDTQVLLNSMKYAH 176 +V + + ++R L E G+V F + ++ D Q L +MK Sbjct: 118 DV----GFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQ-LEEAMKELA 172 Query: 177 MLNAIVA----LDTHDHFLGSRGVINEGI-IANYLGLVGIPSISETVPLARDLLIAQHTG 231 +++A L + +YL P +E + R LL+A+ TG Sbjct: 173 KTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYL--ASRPVFTEVEAIQRILLLAKETG 230 Query: 232 GHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSET 291 H +S +++ LI+ A+A T + L DV + K PP+R Sbjct: 231 CRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAA 290 Query: 292 ERMSMVEALEKGDIDIIVSDHTPRHMDTKLLP---FAEASFGSIGLETMLSAALRLFHGQ 348 + + EALE GDID++VSDH+P + KLL F +A G GL+ L L + Sbjct: 291 NQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNK 350 Query: 349 QI-SLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405 + SL+ + R + PA++F L G + G AD + D ++TV A+D+ +K + Sbjct: 351 RGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNKIS 410 Query: 406 VFDKEFFTGKVVRTYISGKQVYT 428 + G+V T + G VY Sbjct: 411 PYVGRTLKGRVHATILRGTVVYQ 433 >gnl|CDD|30061 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.. Length = 361 Score = 160 bits (405), Expect = 9e-40 Identities = 97/372 (26%), Positives = 168/372 (45%), Gaps = 13/372 (3%) Query: 54 GLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKY 113 GL+ +PG+ID V Y ++ + S+ A AGG+T+++ MP + Sbjct: 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYE- 59 Query: 114 ALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSM- 172 L KS+++ +T + +++ E+ G F+ S D ++ Sbjct: 60 KLRLAAAKSVVDYGLYFGVTGS---EDLEELDKAPPAGYKIFMGD--STGDLLDDEETLE 114 Query: 173 KYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGG 232 + + +V D + + + + V AR L +A+ G Sbjct: 115 RIFAEGSVLVTFHAEDEDRLREN--RKELKGESAHPRIRDAEAAAVATARALKLARRHGA 172 Query: 233 HYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETE 292 H +S P+ + LIK AK T ++ ++L L+ D + +L KV PPLRS + Sbjct: 173 RLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSRED 229 Query: 293 RMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISL 352 R ++++AL G ID+I SDH P ++ K + A G G+ET L L L + +SL Sbjct: 230 RKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSL 289 Query: 353 KKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEF 411 +++R S PA+IF + G + G AD+ ++DL + T++A++ S T F+ Sbjct: 290 SRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFE 349 Query: 412 FTGKVVRTYISG 423 TG V T + G Sbjct: 350 VTGFPVMTIVRG 361 >gnl|CDD|73256 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.. Length = 337 Score = 150 bits (380), Expect = 7e-37 Identities = 104/372 (27%), Positives = 161/372 (43%), Gaps = 42/372 (11%) Query: 55 LVAVPGIIDARVTL-TGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTF--- 110 L+ +PG ID V L Y ++ + S+ A AGG+T++I MP +D Sbjct: 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELK 60 Query: 111 IKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLN 170 IK A E V + G E++ L + GI S Sbjct: 61 IKLAEESSYVDFSFHAGIG-------PGDVTDELKKLFDAGINS---------------- 97 Query: 171 SMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHT 230 +N D G+ I + ++ V R +A+ Sbjct: 98 ---LKVFMNYYFGELF-DVDDGTLMRTFLEIASRGGPVM--------VHAERAAQLAEEA 145 Query: 231 GGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSE 290 G + H + +S +++ LIK AK K TC + ++L L+E+ + + + KV PPLRS+ Sbjct: 146 GANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSK 205 Query: 291 TERMSMVEALEKGDIDIIVSDHTPRHMDTK--LLPFAEASFGSIGLETMLSAALRLFHGQ 348 +R ++ E ++ G ID I SDH P + K +A G GLET L L + Sbjct: 206 EDREALWEGVKNGKIDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILLTEGVKR 265 Query: 349 QISLKKLIRALSTRPAQIFNL-PGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVF 407 +SL+ L+ LS PA+IF L P GT+ G AD+ ++D +W V A+++ S T F Sbjct: 266 GLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAEEIESKADWTPF 325 Query: 408 DKEFFTGKVVRT 419 + TGK V T Sbjct: 326 EGMEVTGKPVST 337 >gnl|CDD|30057 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.. Length = 447 Score = 114 bits (287), Expect = 5e-26 Identities = 109/451 (24%), Positives = 188/451 (41%), Gaps = 45/451 (9%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 ++ N I+ I++E+G I+A G N + P + D TG +PG ID Sbjct: 2 IIKNGTIVTADGSFK--ADILIEDGKIVAIGP---NLEAPGGVEVIDATGKYVLPGGIDP 56 Query: 65 RVTL------TGSPDEYSKNITTLSKEAVAGGITSIILM--PLGMSSFLDEY-TFIKYAL 115 L T + D++ + ++ A AGG T+II P S L+ + A Sbjct: 57 HTHLELPFMGTVTADDF----ESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKAD 112 Query: 116 EEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSF----IQSPMSIHDTQVLLNS 171 KS+I+ Y + ++ I E+ L ++GI SF + + D + LL+ Sbjct: 113 G----KSVID-YGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKGLLMVDDEELLDV 167 Query: 172 MKYAHMLNAIVALDTHDH---FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQ 228 +K A L A+V + + + ++ +G + P E AR + +A+ Sbjct: 168 LKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAE 227 Query: 229 HTGGHYHASVISIPQSIALIKHAKAHNTKA---TCGISINNLILNENDVEM--YNSLRKV 283 G + +S ++ I A+ TC L+L+++D + + V Sbjct: 228 LAGAPLYIVHVSSKEAADEIARARKKGLPVYGETC---PQYLLLDDSDYWKDWFEGAKYV 284 Query: 284 L-PPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLL---PFAEASFGSIGLETMLS 339 PPLR + ++ ++ + L G + + SDH P + K F + G G+ET + Sbjct: 285 CSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMP 344 Query: 340 AAL-RLFHGQQISLKKLIRALSTRPAQIFNL--PGGTLQTGTAADIALIDLNYQWTVKAD 396 +I+L+K + ST PA+IF L GT+ G+ AD+ + D N + T+ AD Sbjct: 345 LLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISAD 404 Query: 397 DMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427 +F+ G V T GK V Sbjct: 405 THHHNVDYNIFEGMKVKGWPVVTISRGKVVV 435 >gnl|CDD|30059 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.. Length = 344 Score = 107 bits (268), Expect = 7e-24 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 44/374 (11%) Query: 55 LVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYA 114 + +PG+ID V L + ++ + +K A+AGG T + MP S +D + Sbjct: 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASL--KL 59 Query: 115 LEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKY 174 ++ + Y + ++ + E + + + LN Sbjct: 60 VQSLAQAKARCDYAFSIGATSTNAATVGE-----------LASEAVGL---KFYLNETFS 105 Query: 175 AHMLNAIVALDTH-DHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGH 233 +L+ I A +H + + ++ ++ +++ LA LL+A Sbjct: 106 TLILDKITAWASHFNAWPSTKPIVTH---------------AKSQTLAAVLLLASLHNRS 150 Query: 234 YHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETER 293 H +S + I LI+ AKA K TC +S ++L L+++D+ +V P L + ++ Sbjct: 151 IHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLP--RGQYEVRPFLPTREDQ 208 Query: 294 MSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLK 353 ++ E L+ ID +DH P + K + G G+ET L L H +++++ Sbjct: 209 EALWENLDY--IDCFATDHAPHTLAEKT--GNKPPPGFPGVETSLPLLLTAVHEGRLTIE 264 Query: 354 KLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413 ++ L T P +IFNLP Q+ T + +DL+ +WT+ + + S T F+ + Sbjct: 265 DIVDRLHTNPKRIFNLPP---QSDTYVE---VDLDEEWTIPKNPLQSKKGWTPFEGKKVK 318 Query: 414 GKVVRTYISGKQVY 427 GKV R + G+ + Sbjct: 319 GKVQRVVLRGETAF 332 >gnl|CDD|37795 KOG2584, KOG2584, KOG2584, Dihydroorotase and related enzymes [Nucleotide transport and metabolism]. Length = 522 Score = 65.3 bits (159), Expect = 3e-11 Identities = 102/453 (22%), Positives = 175/453 (38%), Gaps = 50/453 (11%) Query: 8 NTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67 R++ + D + VE+GII G N P + D TG + +PG ID Sbjct: 20 GGRVV--NDDQSFKADVYVEDGIIKEVGE---NLIIPGGVKVIDATGKMVIPGGIDPHTH 74 Query: 68 L------TGSPDEYSKNITTLSKEAVAGGITSIILMPLGM--SSFLDEYTFIKYALEEIR 119 L S D++ + +K A+AGG T II L +S ++ + + E Sbjct: 75 LQMPFMGMTSVDDFFQG----TKAALAGGTTMIIDFVLPDKGTSLVEAF---EKWREWAD 127 Query: 120 VKSLINVYPTACLTSNMEG-KEISEMRLLQEQGIVSFI------QSPMSIHDTQVLLNSM 172 K + +T KE E+ L++E+G+ SF M + D++ L ++ Sbjct: 128 PKVCCDYGLHVGITWWSPSVKEEMEI-LVKEKGVNSFKFFMAYKDLYM-VRDSE-LYEAL 184 Query: 173 KYAHMLNAIVALDTHD---HFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQH 229 K L A+ + + G + ++ GI + P E R + IA+ Sbjct: 185 KVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQ 244 Query: 230 TGGHYHASVISIPQSIALIKHAKAHN-------TKATCGISINNLILNENDVEMYNSLRK 282 + + + I A+ A+ G ++ + D Sbjct: 245 ANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAF---V 301 Query: 283 VLPPLRSE-TERMSMVEALEKGDIDIIVSDHTPRHMDTKLL---PFAEASFGSIGLETML 338 PPLR + T +++ L +GD+ + SDH + K L F + G G+E + Sbjct: 302 TSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRM 361 Query: 339 SAAL-RLFHGQQISLKKLIRALSTRPAQIFNL--PGGTLQTGTAADIALIDLNYQWTVKA 395 S + H ++ + + ST A+IFNL G + G+ ADI + D N T+ A Sbjct: 362 SVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISA 421 Query: 396 DDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYT 428 S + +F+ G + T G+ VY Sbjct: 422 KTHHSANDFNIFEGMTVHGVPLVTISRGRVVYE 454 >gnl|CDD|31421 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 406 Score = 48.8 bits (116), Expect = 3e-06 Identities = 79/442 (17%), Positives = 137/442 (30%), Gaps = 78/442 (17%) Query: 8 NTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67 R + I++ GA+++E+G I+A G + ++ P A + D G PG+IDA Sbjct: 16 AGRGLPGLGIIED-GAVLIEDGKIVAVGPEEIDI--PAGAEVIDAKGKTVTPGLIDAHTH 72 Query: 68 LTGSPD---EYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124 L E+ S + I+ + F A R+K Sbjct: 73 LGFGGSRGGEFELREAGASYTEILAAGGGILPL---DRGFTTARDGGLKATALPRLKRAG 129 Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVAL 184 + + E K + L E G + L S A + A Sbjct: 130 -----SAGVTTGERKSGYGLDLETEGGHLRAA---------AGLKESRPVAVGSTPLAAH 175 Query: 185 DTHDHFLGSRGVINEGIIANYL----------GLVGIPSISETVPLARDLLIAQHTGGHY 234 + +R G + R +L A G Sbjct: 176 GVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIP 235 Query: 235 ---HASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRS-- 289 HA + + A G +++ + + VL P Sbjct: 236 VKAHAHGAD-----GIKLAIRLGAKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFE 290 Query: 290 --ETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHG 347 E + + ++ G I +DH P S GS+ LE ++ A+RL Sbjct: 291 LRELDYKPARKLIDAGVKVAIGTDHNP-----------GTSHGSLALE--MALAVRLG-- 335 Query: 348 QQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405 ++ ++ ++A + A+ L G+L+ G AD+ + D D ++ I Sbjct: 336 --MTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWD--------GDPLADIPYFL 385 Query: 406 VFDKEFFTGKVVRTYISGKQVY 427 + KV GK VY Sbjct: 386 GLN------KVEAVIKDGKVVY 401 >gnl|CDD|33745 COG3964, COG3964, Predicted amidohydrolase [General function prediction only]. Length = 386 Score = 48.0 bits (114), Expect = 5e-06 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 13/155 (8%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 +L R+IDP+R IDE+ I + NG I AA P I D G + PG Sbjct: 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAADD----YPAPAETQIIDADGCIVSPG 58 Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSII-LMPLGMSSFLDEYTFIKYALEEIR 119 +ID V + E G+T+++ G ++F Y + A R Sbjct: 59 LIDLHVHVYYGGTEGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASRV-R 114 Query: 120 VKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVS 154 +K+ +NV P SN E+ + + E I + Sbjct: 115 IKAFLNVSPPGLTASN----ELYDPDNIDEDKIHA 145 Score = 33.4 bits (76), Expect = 0.12 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKAD 396 + L +I A++ PA + L GTL G ADI + L + D Sbjct: 300 MPLTDVINAVTHNPAVLIGLAEIGTLAPGAFADITVFKLKNRHVEFVD 347 >gnl|CDD|30041 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.. Length = 411 Score = 38.6 bits (90), Expect = 0.003 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 7 NNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 N T + R + E G ++VE+G I+A G +P +I D G V +PG+++ Sbjct: 5 NGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVI-DAKGKVVMPGLVNT 61 Score = 32.1 bits (73), Expect = 0.29 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 334 LETMLSAAL--RLFHGQ--QISLKKLIRALSTRPAQIFNLP-GGTLQTGTAADIALIDLN 388 E M AAL +L HG + ++ + + A+ L G+L+ G AD+ LIDL+ Sbjct: 312 FEEMRLAALLQKLAHGDPTALPAEEALEMATIGGAKALGLDEIGSLEVGKKADLILIDLD 371 Query: 389 YQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427 + D S + V+ G V ++G+ V Sbjct: 372 GPHLLPVHDPIS---HLVYSA--NGGDVDTVIVNGRVVM 405 >gnl|CDD|30049 cd01306, PhnM, PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.. Length = 325 Score = 38.3 bits (89), Expect = 0.004 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 21/102 (20%) Query: 289 SETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQ 348 S + +S E G +DI+ SD+ P AS +L AA RL Sbjct: 232 SHSGNVSARELAAHGLLDILSSDYVP------------AS--------LLHAAFRLADLG 271 Query: 349 QISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNY 389 SL + + +S PA+ L G++ G AD+ L+D Sbjct: 272 GWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILVDDMD 313 >gnl|CDD|30039 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.. Length = 371 Score = 38.3 bits (89), Expect = 0.004 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 24 IIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPD---EYSKNI 79 I + +G I A G A +L A P +A D G PG++D L + D E++ + Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60 Query: 80 ---TTLSKEAVAGGITSII 95 + A GGI S + Sbjct: 61 AGASYEEILAAGGGILSTV 79 >gnl|CDD|32005 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]. Length = 380 Score = 37.9 bits (88), Expect = 0.006 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 16/145 (11%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 L N RI +D GA+++E+G I A L P A I D G + VPG ID Sbjct: 3 ALKNGRIFTGHGVLD-GGAVVIEDGKIEAVVPAEL----PADAEIIDLKGALLVPGFIDL 57 Query: 65 RVTLTGS---PDEYSKN-ITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120 + G D S + T+++ + G TS +P +++ L++ IK AL IR Sbjct: 58 HIHGGGGADFMDAGSVETLETMAEAHLRHGTTS--FLPTLITASLEK---IKAALRAIR- 111 Query: 121 KSLINVYPTACLTSNMEGKEISEMR 145 I L ++EG +S + Sbjct: 112 -EAIAKGGAQILGIHLEGPFLSPEK 135 Score = 30.6 bits (69), Expect = 0.91 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 336 TMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQ 390 TM A L ISL + +R S PA+ L G+++ G AD+ ++D + Sbjct: 311 TMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDLN 367 >gnl|CDD|30050 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.. Length = 338 Score = 37.9 bits (88), Expect = 0.006 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 12/132 (9%) Query: 23 AIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITTL 82 + +ENG I A GA P + I D G PG ID V + Y + Sbjct: 1 DVAIENGKIAAVGAALAA---PAATQIVDAGGCYVSPGWIDLHVHVYQGGTRYGDRPDMI 57 Query: 83 SKEAVAGGITSII-LMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEI 141 V G+T+++ G + + RV + +N+ + E+ Sbjct: 58 ---GVKSGVTTVVDAGSAGADNIDGFRYTVIERSAT-RVYAFLNISRVGLV----AQDEL 109 Query: 142 SEMRLLQEQGIV 153 + + E +V Sbjct: 110 PDPDNIDEDAVV 121 Score = 32.5 bits (74), Expect = 0.25 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKAD 396 + L+++I A++ PA++ L GTL G AD+ + DL D Sbjct: 277 MPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKDGRVELVD 324 >gnl|CDD|31762 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]. Length = 535 Score = 37.2 bits (86), Expect = 0.010 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADA-LNAKFPTSALIHDCTGLVAVPGIID 63 +L+N RI A+ +++G I+A G+DA L A + + D G +PG +D Sbjct: 8 ILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVD 67 Query: 64 A 64 A Sbjct: 68 A 68 Score = 31.8 bits (72), Expect = 0.35 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%) Query: 372 GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYTLE 430 G+L+ G AD A++D + +TV D + KVV T ++GK VY Sbjct: 491 GSLEPGKLADFAVLDRDP-FTVDPDSIKDT-------------KVVLTIVAGKVVYRAA 535 >gnl|CDD|30034 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.. Length = 374 Score = 37.1 bits (86), Expect = 0.010 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 18/111 (16%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 ++ N RI+ P D GA++VE+G I+A G + + I D G VPG ID Sbjct: 2 IIKNARILTPGGLED--GAVLVEDGKIVAIGP---EDELEEADEIIDLKGQYLVPGFIDI 56 Query: 65 RV-------TLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEY 108 + + G+ + + T+++ G TS +P +++ +E Sbjct: 57 HIHGGGGADFMDGTAE----ALKTIAEALAKHGTTS--FLPTTVTAPPEEI 101 Score = 32.5 bits (74), Expect = 0.20 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 336 TMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQ 390 TM A + L++ +R S PA++ L G+L+ G AD+ ++D + Sbjct: 310 TMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDDLN 366 >gnl|CDD|73255 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.. Length = 415 Score = 36.0 bits (83), Expect = 0.022 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLN 388 +SL++ +R ++ PA++F L G + G ADI + D + Sbjct: 335 LSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPD 374 Score = 33.7 bits (77), Expect = 0.092 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 9/98 (9%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 V+ N ++D + + + +G I A G ++ + D GLV PG ID Sbjct: 3 VIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS----TSAREVIDAAGLVVAPGFID- 57 Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMS 102 + D L + G+T+++L G+S Sbjct: 58 ---VHTHYDGQVFWDPDLR-PSSRQGVTTVVLGNCGVS 91 >gnl|CDD|145256 pfam01979, Amidohydro_1, Amidohydrolase family. This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 Score = 35.3 bits (81), Expect = 0.030 Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 50/344 (14%) Query: 56 VAVPGIIDARVTLTGSP--DEYSK-NITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIK 112 + +PG+IDA V L E S I T +K + G T+++ P ++ + I Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60 Query: 113 YAL-EEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNS 171 L +++ + + + E E+ +E I + + Sbjct: 61 EGLAAAPKLEPNVGLLLKGSVGGRAELGEVVIDGAGEEAKA-----GADLIKVIEDGGKT 115 Query: 172 MKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTG 231 K + + AL HD ++ + N + L +E + L + A+ +G Sbjct: 116 AKAIDGV--LPALAPHDP-----PTVSHEGLKNEVELAEETEEAEKLGLLVHIHAAEASG 168 Query: 232 GHYHASVISIPQSIALIKH-----AKAHNTKATCGISINNLILNENDVEMYNSLRKVLPP 286 V +I + L+ H +A G I + L+ + L + Sbjct: 169 E-----VNAILGGVDLLAHCLHLDDEAIELLKEAGSGIAHCPLSNESI-----LHRGGRF 218 Query: 287 LRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH 346 + + E G R A+ + F+ Sbjct: 219 SLMSGDAQGIGELGSGG----------ARLARL-----ADKGGVVGLGTDGAGLNGKDFY 263 Query: 347 GQ--QISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALID 386 +S + +R + PA+ L G+++ G AD+ ++D Sbjct: 264 LDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307 >gnl|CDD|30751 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]. Length = 421 Score = 35.1 bits (80), Expect = 0.035 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 1 MTSFVLNNTRII--DPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAV 58 MT ++ ++ DP I E G +++E+G I+A GA NA+ P + D G + + Sbjct: 1 MTMLLIRGDLLLTNDPEGRI-EDGDLVIEDGKIVAIGA---NAEGPPDEEVIDAKGKLVL 56 Query: 59 PGIIDA 64 PG ++A Sbjct: 57 PGFVNA 62 Score = 28.1 bits (62), Expect = 5.1 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 334 LETMLSAAL--RLFHGQQISLKK--LIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLN 388 L M +A L +L G + + + A+ L G+L+ G AD+ ++D + Sbjct: 316 LREMRTADLLQKLAGGLLAAQLPGEALDMATLGGAKALGLDDIGSLEVGKKADLVVLDAS 375 Query: 389 Y 389 Sbjct: 376 A 376 >gnl|CDD|30043 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.. Length = 479 Score = 34.2 bits (78), Expect = 0.064 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 23 AIIVENGIILAAGADA-LNAKFPTSALIHDCTGLVAVPGIIDA 64 A+ V +G I+A G+DA A + + D G +PG ID+ Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDS 43 >gnl|CDD|31205 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism]. Length = 584 Score = 34.4 bits (79), Expect = 0.065 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 14/126 (11%) Query: 4 FVLNNTRIIDP-SRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGII 62 VL N RI+D + +I + G I + G I+ + + + D G VPG I Sbjct: 26 LVLKNGRIVDVVTGEIYK-GDIAIAGGRIVGVIGEYR----AEATEVIDAAGRYIVPGFI 80 Query: 63 DARVTLTGSPDEYSK-NITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVK 121 DA + + E S + ++ + G T+++ P +++ L E I++ L+E + + Sbjct: 81 DAHLHI-----ESSMLTPSEFARAVLPHGTTTVVSDPHEIANVLGEDG-IRFMLDEAK-E 133 Query: 122 SLINVY 127 + + VY Sbjct: 134 TPLKVY 139 >gnl|CDD|30047 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.. Length = 541 Score = 33.7 bits (77), Expect = 0.097 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 6 LNNTRIIDPSRDID-EVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 + N + DP I+ E I + +G I+ + + A AK + D +G V + G +D Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGAKPAK------VIDASGKVVMAGGVDM 54 Query: 65 RVTLTGS 71 + G Sbjct: 55 HSHIAGG 61 >gnl|CDD|30051 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.. Length = 387 Score = 32.9 bits (75), Expect = 0.15 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 ++ N + P + + +I I+ A D LN + + D G + VPG ID Sbjct: 3 LIKNAEVYAPE-YLGKKDILIAGGKIL--AIEDQLNLPGYENVTVVDLHGKILVPGFIDQ 59 Query: 65 RVTLTGSPDE--YSKNI--TTLSKEAVAGGITSII 95 V + G E S TLS + G+T+++ Sbjct: 60 HVHIIGGGGEGGPSTRTPEVTLS-DLTTAGVTTVV 93 >gnl|CDD|33257 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]. Length = 377 Score = 32.6 bits (74), Expect = 0.24 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 22/103 (21%) Query: 289 SETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH-G 347 S + +S E + G +DI+ SD+ P ++L AA RL G Sbjct: 279 SHSGNVSARELAQHGLLDILSSDYVP--------------------ASLLHAAFRLADLG 318 Query: 348 QQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNY 389 ISL + + ++ PA+ L G + G AD+ + + Sbjct: 319 SNISLPQAVALVTKNPARALGLTDRGRIAPGLRADLVRVRRDG 361 >gnl|CDD|30055 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.. Length = 381 Score = 32.2 bits (73), Expect = 0.28 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 327 ASFGSIGLETMLSAALRLFHGQQIS--LKKLIRALSTRPAQIFNLPGGTLQTGTAADIAL 384 +S S+ L L A L L + + +L+ + A+ L G ++ G AD A+ Sbjct: 291 SSNISLSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGLNNGEIEAGKRADFAV 350 Query: 385 IDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGK 424 +L + + I +V +ISGK Sbjct: 351 FELPGPGIKEQAPLQFILH---------AKEVRHLFISGK 381 >gnl|CDD|30046 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.. Length = 429 Score = 31.7 bits (72), Expect = 0.39 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 18 IDEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARV 66 + E G I+V +G I+AAG A+ L A + D +PG ID + Sbjct: 23 VVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHI 72 >gnl|CDD|73254 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.. Length = 422 Score = 30.9 bits (70), Expect = 0.74 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%) Query: 51 DCTGLVAVPGIIDARVTLTGSPDEYSKNI-TTLSKEAVAGGITSIILMPLGMSSFLDEYT 109 D G VPG IDA + + E S + +K + G T++I P +++ Sbjct: 1 DAEGKYIVPGFIDAHLHI-----ESSMLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDG 55 Query: 110 FIKYALEEIRVKSLINVY 127 I++ LE+ + K+ ++++ Sbjct: 56 -IEFMLEDAK-KTPLDIF 71 >gnl|CDD|146609 pfam04069, OpuAC, Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA). Length = 256 Score = 30.8 bits (70), Expect = 0.79 Identities = 7/27 (25%), Positives = 11/27 (40%) Query: 293 RMSMVEALEKGDIDIIVSDHTPRHMDT 319 + AL GDID+ + T + Sbjct: 39 TAVLFAALASGDIDLYPEEWTGTTYEA 65 >gnl|CDD|30052 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.. Length = 359 Score = 30.6 bits (69), Expect = 0.94 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 22/113 (19%) Query: 317 MDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTL 374 + + FA +S + L+ +S ++ ++A++ PA+I + G+L Sbjct: 267 LKKGGVAFAISSDHPVLNIRNLNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSL 326 Query: 375 QTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427 + G AD+ + + D + T K + YI G+ VY Sbjct: 327 EPGKDADLVVWN--------GDPLEP------------TSKPEQVYIDGRLVY 359 Score = 30.6 bits (69), Expect = 0.95 Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 26/94 (27%) Query: 28 NGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTL----TGSPDEYSKNITTLS 83 +G I+A GA P A + D G PG+IDA L G E S Sbjct: 1 DGKIVAVGA---EITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETD 57 Query: 84 -------------------KEAVAGGITSIILMP 98 K A AGG+T++ ++P Sbjct: 58 PVTPHVRAIDGINPDDEAFKRARAGGVTTVQVLP 91 >gnl|CDD|39095 KOG3892, KOG3892, KOG3892, N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]. Length = 407 Score = 30.0 bits (67), Expect = 1.4 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 6/49 (12%) Query: 51 DCTGLVAVPGIIDAR------VTLTGSPDEYSKNITTLSKEAVAGGITS 93 DC G + PG ID + V + ++ + + ++++ ++ G+TS Sbjct: 58 DCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGVALVARQLLSHGVTS 106 >gnl|CDD|33451 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 579 Score = 29.2 bits (65), Expect = 2.4 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 7/98 (7%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 V+ + I D + + + + +G+I A AL+ + D G + PG ID Sbjct: 9 VIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEV--DAAGRIVAPGFIDV 66 Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMS 102 + + + + +V G+T+++L G+S Sbjct: 67 H-----THYDAEVLLDPGLRPSVRHGVTTVVLGNCGIS 99 >gnl|CDD|73214 cd00550, ArsA_ATPase, Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.. Length = 254 Score = 29.1 bits (65), Expect = 2.5 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 239 ISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVE 298 + IP+ ++L + +A A GI ++ +I+N ++LP + + Sbjct: 166 VCIPEKMSLYETERAIQELAKYGIDVDAVIVN-----------QLLPEDVTNCPFLEARR 214 Query: 299 ALEKGDIDIIVSDHTPRHMDT-KLLP 323 +++ ++ I + + LLP Sbjct: 215 EIQQKYLEEIEELFSDLPVAKLPLLP 240 >gnl|CDD|34031 COG4309, COG4309, Uncharacterized conserved protein [Function unknown]. Length = 98 Score = 28.4 bits (63), Expect = 3.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 282 KVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLET 336 + +PP SM+ L++G+ I+SDH PR + +L FG LE Sbjct: 13 RPIPPRERHPLIFSMLGKLKEGESLEIISDHDPRPLRYQLSTEFPGKFGWEYLEN 67 >gnl|CDD|34483 COG4874, COG4874, Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]. Length = 318 Score = 28.5 bits (63), Expect = 4.1 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 12/92 (13%) Query: 288 RSETERMSMVEALEKGDIDIIVSDHT-PRHMDTKLLP---FAEASFGSIGLETMLSAALR 343 R+ +E +MVE L + +D+++ D T + P F+ G + L M A R Sbjct: 54 RAMSEFNAMVEGLRQAGVDVVIFDDTGQGETPDSVFPNNWFSTHEAGEVFLYPMACANRR 113 Query: 344 L--------FHGQQISLKKLIRALSTRPAQIF 367 L Q ++KK+ L+ Q F Sbjct: 114 LERPEALIDTLKQGFAVKKVHDYLALEEQQAF 145 >gnl|CDD|31393 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription]. Length = 677 Score = 27.1 bits (60), Expect = 9.6 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 10/46 (21%) Query: 277 YNSLRKVLPPLRSE----------TERMSMVEALEKGDIDIIVSDH 312 Y SLRK L PL R ++E L G+IDI+V H Sbjct: 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH 373 >gnl|CDD|111283 pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. Length = 304 Score = 26.9 bits (60), Expect = 9.9 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 239 ISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVE 298 + IP+ ++L + +A A GI ++ +I+N +VLP + + Sbjct: 212 VCIPEKMSLYETERAIQELAKYGIDVDAVIVN-----------QVLPETEQDCPFCEARK 260 Query: 299 ALEKGDIDIIVSDHTPRHMDT-KLLP 323 +++ + I + + LLP Sbjct: 261 EIQQKYLKEIEELFSDLPVAKLPLLP 286 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0724 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,943,776 Number of extensions: 263556 Number of successful extensions: 781 Number of sequences better than 10.0: 1 Number of HSP's gapped: 752 Number of HSP's successfully gapped: 59 Length of query: 431 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 334 Effective length of database: 4,167,664 Effective search space: 1391999776 Effective search space used: 1391999776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.5 bits)