RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus
Liberibacter asiaticus str. psy62]
(431 letters)
>gnl|CDD|30060 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth..
Length = 374
Score = 328 bits (842), Expect = 2e-90
Identities = 141/374 (37%), Positives = 212/374 (56%), Gaps = 2/374 (0%)
Query: 47 ALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLD 106
A + D G + PG++D V L EY + + + +K A AGG T+++ MP + +D
Sbjct: 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVID 60
Query: 107 EYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQ 166
++ + ++ V P LT ++G+E++E+ L E G V F I D +
Sbjct: 61 NPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGFSDDGKPIQDAE 120
Query: 167 VLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLI 226
+L +++YA ML+ + + D L GV+NEG +A+ LGL GIP +ET+ +ARDL +
Sbjct: 121 LLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLPGIPPEAETIMVARDLEL 180
Query: 227 AQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPP 286
A+ TG H +S +S+ LI+ AKA T ++ ++L+L++ +E Y++ KV PP
Sbjct: 181 AEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPP 240
Query: 287 LRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH 346
LRSE +R +++EAL+ G ID I SDH P + K LPFAEA G IGLET L L
Sbjct: 241 LRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLV 300
Query: 347 -GQQISLKKLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405
G ++L LIRALST PA+I LP G L+ G AD+ L D + +W V + S KNT
Sbjct: 301 KGGLLTLPDLIRALSTNPAKILGLPPGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNT 360
Query: 406 VFDKEFFTGKVVRT 419
FD + G+V+ T
Sbjct: 361 PFDGQKLKGRVLAT 374
>gnl|CDD|30393 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 318 bits (817), Expect = 2e-87
Identities = 155/425 (36%), Positives = 237/425 (55%), Gaps = 8/425 (1%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
++ N R++DP D EV I++++G I A G N + + A I D GL+ +PG++D
Sbjct: 4 LIKNARVVDPGED--EVADILIKDGKIAAIGK---NLEPTSGAEIIDAKGLLVLPGLVDL 58
Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124
V E+ + T S+ A AGG+T+++ MP +D ++ LE + KS++
Sbjct: 59 HVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPN-TKPPIDTAEALEDKLERAKGKSVV 117
Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVAL 184
+ LT GK E G F+ D VL +++YA L A++ +
Sbjct: 118 DYAFYGGLTKGNLGKL-ELTERGVEAGFKGFMDDSTGALDDDVLEEALEYAAELGALILV 176
Query: 185 DTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQS 244
D L + GV+NEG+ A LGL G P I+E +ARDL +A+ TG H IS +S
Sbjct: 177 HAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKES 236
Query: 245 IALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGD 304
+ LI+ AKA + T ++ ++L+L+E D+E +L KV PPLR E +R ++ EAL+ G
Sbjct: 237 VELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGV 296
Query: 305 IDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPA 364
ID+I SDH P ++ K LPF EA G GLET L L L ++SL++L+ LST PA
Sbjct: 297 IDVIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPA 356
Query: 365 QIFNLP-GGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISG 423
+IF LP G ++ G AD+ L+D + +WT++A+++ S KN+ F+ G+VV T + G
Sbjct: 357 RIFGLPPKGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFEGFELKGRVVATILRG 416
Query: 424 KQVYT 428
K VY
Sbjct: 417 KVVYE 421
>gnl|CDD|30058 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid..
Length = 447
Score = 165 bits (420), Expect = 2e-41
Identities = 121/443 (27%), Positives = 192/443 (43%), Gaps = 31/443 (6%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
V+ N R++ P + I V+ G I A G D N + + D GLV +PG+ID
Sbjct: 3 VIKNGRVVTPDGVRE--ADIAVKGGKIAAIGPDIAN---TEAEEVIDAGGLVVMPGLIDT 57
Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124
V + + T +K A AGGIT+II MPL ++ LE + K +
Sbjct: 58 HVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHV 117
Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSF--------IQSPMSIHDTQVLLNSMKYAH 176
+V + + ++R L E G+V F + ++ D Q L +MK
Sbjct: 118 DV----GFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQ-LEEAMKELA 172
Query: 177 MLNAIVA----LDTHDHFLGSRGVINEGI-IANYLGLVGIPSISETVPLARDLLIAQHTG 231
+++A L + +YL P +E + R LL+A+ TG
Sbjct: 173 KTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYL--ASRPVFTEVEAIQRILLLAKETG 230
Query: 232 GHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSET 291
H +S +++ LI+ A+A T + L DV + K PP+R
Sbjct: 231 CRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAA 290
Query: 292 ERMSMVEALEKGDIDIIVSDHTPRHMDTKLLP---FAEASFGSIGLETMLSAALRLFHGQ 348
+ + EALE GDID++VSDH+P + KLL F +A G GL+ L L +
Sbjct: 291 NQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNK 350
Query: 349 QI-SLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405
+ SL+ + R + PA++F L G + G AD + D ++TV A+D+ +K +
Sbjct: 351 RGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNKIS 410
Query: 406 VFDKEFFTGKVVRTYISGKQVYT 428
+ G+V T + G VY
Sbjct: 411 PYVGRTLKGRVHATILRGTVVYQ 433
>gnl|CDD|30061 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family..
Length = 361
Score = 160 bits (405), Expect = 9e-40
Identities = 97/372 (26%), Positives = 168/372 (45%), Gaps = 13/372 (3%)
Query: 54 GLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKY 113
GL+ +PG+ID V Y ++ + S+ A AGG+T+++ MP +
Sbjct: 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYE- 59
Query: 114 ALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSM- 172
L KS+++ +T + +++ E+ G F+ S D ++
Sbjct: 60 KLRLAAAKSVVDYGLYFGVTGS---EDLEELDKAPPAGYKIFMGD--STGDLLDDEETLE 114
Query: 173 KYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGG 232
+ + +V D + + + + V AR L +A+ G
Sbjct: 115 RIFAEGSVLVTFHAEDEDRLREN--RKELKGESAHPRIRDAEAAAVATARALKLARRHGA 172
Query: 233 HYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETE 292
H +S P+ + LIK AK T ++ ++L L+ D + +L KV PPLRS +
Sbjct: 173 RLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSRED 229
Query: 293 RMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISL 352
R ++++AL G ID+I SDH P ++ K + A G G+ET L L L + +SL
Sbjct: 230 RKALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSL 289
Query: 353 KKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEF 411
+++R S PA+IF + G + G AD+ ++DL + T++A++ S T F+
Sbjct: 290 SRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFE 349
Query: 412 FTGKVVRTYISG 423
TG V T + G
Sbjct: 350 VTGFPVMTIVRG 361
>gnl|CDD|73256 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines..
Length = 337
Score = 150 bits (380), Expect = 7e-37
Identities = 104/372 (27%), Positives = 161/372 (43%), Gaps = 42/372 (11%)
Query: 55 LVAVPGIIDARVTL-TGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTF--- 110
L+ +PG ID V L Y ++ + S+ A AGG+T++I MP +D
Sbjct: 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELK 60
Query: 111 IKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLN 170
IK A E V + G E++ L + GI S
Sbjct: 61 IKLAEESSYVDFSFHAGIG-------PGDVTDELKKLFDAGINS---------------- 97
Query: 171 SMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHT 230
+N D G+ I + ++ V R +A+
Sbjct: 98 ---LKVFMNYYFGELF-DVDDGTLMRTFLEIASRGGPVM--------VHAERAAQLAEEA 145
Query: 231 GGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSE 290
G + H + +S +++ LIK AK K TC + ++L L+E+ + + + KV PPLRS+
Sbjct: 146 GANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSK 205
Query: 291 TERMSMVEALEKGDIDIIVSDHTPRHMDTK--LLPFAEASFGSIGLETMLSAALRLFHGQ 348
+R ++ E ++ G ID I SDH P + K +A G GLET L L +
Sbjct: 206 EDREALWEGVKNGKIDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILLTEGVKR 265
Query: 349 QISLKKLIRALSTRPAQIFNL-PGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVF 407
+SL+ L+ LS PA+IF L P GT+ G AD+ ++D +W V A+++ S T F
Sbjct: 266 GLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAEEIESKADWTPF 325
Query: 408 DKEFFTGKVVRT 419
+ TGK V T
Sbjct: 326 EGMEVTGKPVST 337
>gnl|CDD|30057 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues..
Length = 447
Score = 114 bits (287), Expect = 5e-26
Identities = 109/451 (24%), Positives = 188/451 (41%), Gaps = 45/451 (9%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
++ N I+ I++E+G I+A G N + P + D TG +PG ID
Sbjct: 2 IIKNGTIVTADGSFK--ADILIEDGKIVAIGP---NLEAPGGVEVIDATGKYVLPGGIDP 56
Query: 65 RVTL------TGSPDEYSKNITTLSKEAVAGGITSIILM--PLGMSSFLDEY-TFIKYAL 115
L T + D++ + ++ A AGG T+II P S L+ + A
Sbjct: 57 HTHLELPFMGTVTADDF----ESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKAD 112
Query: 116 EEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSF----IQSPMSIHDTQVLLNS 171
KS+I+ Y + ++ I E+ L ++GI SF + + D + LL+
Sbjct: 113 G----KSVID-YGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKGLLMVDDEELLDV 167
Query: 172 MKYAHMLNAIVALDTHDH---FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQ 228
+K A L A+V + + + ++ +G + P E AR + +A+
Sbjct: 168 LKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAE 227
Query: 229 HTGGHYHASVISIPQSIALIKHAKAHNTKA---TCGISINNLILNENDVEM--YNSLRKV 283
G + +S ++ I A+ TC L+L+++D + + V
Sbjct: 228 LAGAPLYIVHVSSKEAADEIARARKKGLPVYGETC---PQYLLLDDSDYWKDWFEGAKYV 284
Query: 284 L-PPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLL---PFAEASFGSIGLETMLS 339
PPLR + ++ ++ + L G + + SDH P + K F + G G+ET +
Sbjct: 285 CSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMP 344
Query: 340 AAL-RLFHGQQISLKKLIRALSTRPAQIFNL--PGGTLQTGTAADIALIDLNYQWTVKAD 396
+I+L+K + ST PA+IF L GT+ G+ AD+ + D N + T+ AD
Sbjct: 345 LLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISAD 404
Query: 397 DMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427
+F+ G V T GK V
Sbjct: 405 THHHNVDYNIFEGMKVKGWPVVTISRGKVVV 435
>gnl|CDD|30059 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate..
Length = 344
Score = 107 bits (268), Expect = 7e-24
Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 44/374 (11%)
Query: 55 LVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYA 114
+ +PG+ID V L + ++ + +K A+AGG T + MP S +D +
Sbjct: 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASL--KL 59
Query: 115 LEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKY 174
++ + Y + ++ + E + + + LN
Sbjct: 60 VQSLAQAKARCDYAFSIGATSTNAATVGE-----------LASEAVGL---KFYLNETFS 105
Query: 175 AHMLNAIVALDTH-DHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGH 233
+L+ I A +H + + ++ ++ +++ LA LL+A
Sbjct: 106 TLILDKITAWASHFNAWPSTKPIVTH---------------AKSQTLAAVLLLASLHNRS 150
Query: 234 YHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETER 293
H +S + I LI+ AKA K TC +S ++L L+++D+ +V P L + ++
Sbjct: 151 IHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLP--RGQYEVRPFLPTREDQ 208
Query: 294 MSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLK 353
++ E L+ ID +DH P + K + G G+ET L L H +++++
Sbjct: 209 EALWENLDY--IDCFATDHAPHTLAEKT--GNKPPPGFPGVETSLPLLLTAVHEGRLTIE 264
Query: 354 KLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413
++ L T P +IFNLP Q+ T + +DL+ +WT+ + + S T F+ +
Sbjct: 265 DIVDRLHTNPKRIFNLPP---QSDTYVE---VDLDEEWTIPKNPLQSKKGWTPFEGKKVK 318
Query: 414 GKVVRTYISGKQVY 427
GKV R + G+ +
Sbjct: 319 GKVQRVVLRGETAF 332
>gnl|CDD|37795 KOG2584, KOG2584, KOG2584, Dihydroorotase and related enzymes
[Nucleotide transport and metabolism].
Length = 522
Score = 65.3 bits (159), Expect = 3e-11
Identities = 102/453 (22%), Positives = 175/453 (38%), Gaps = 50/453 (11%)
Query: 8 NTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67
R++ + D + VE+GII G N P + D TG + +PG ID
Sbjct: 20 GGRVV--NDDQSFKADVYVEDGIIKEVGE---NLIIPGGVKVIDATGKMVIPGGIDPHTH 74
Query: 68 L------TGSPDEYSKNITTLSKEAVAGGITSIILMPLGM--SSFLDEYTFIKYALEEIR 119
L S D++ + +K A+AGG T II L +S ++ + + E
Sbjct: 75 LQMPFMGMTSVDDFFQG----TKAALAGGTTMIIDFVLPDKGTSLVEAF---EKWREWAD 127
Query: 120 VKSLINVYPTACLTSNMEG-KEISEMRLLQEQGIVSFI------QSPMSIHDTQVLLNSM 172
K + +T KE E+ L++E+G+ SF M + D++ L ++
Sbjct: 128 PKVCCDYGLHVGITWWSPSVKEEMEI-LVKEKGVNSFKFFMAYKDLYM-VRDSE-LYEAL 184
Query: 173 KYAHMLNAIVALDTHD---HFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQH 229
K L A+ + + G + ++ GI + P E R + IA+
Sbjct: 185 KVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQ 244
Query: 230 TGGHYHASVISIPQSIALIKHAKAHN-------TKATCGISINNLILNENDVEMYNSLRK 282
+ + + I A+ A+ G ++ + D
Sbjct: 245 ANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAF---V 301
Query: 283 VLPPLRSE-TERMSMVEALEKGDIDIIVSDHTPRHMDTKLL---PFAEASFGSIGLETML 338
PPLR + T +++ L +GD+ + SDH + K L F + G G+E +
Sbjct: 302 TSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRM 361
Query: 339 SAAL-RLFHGQQISLKKLIRALSTRPAQIFNL--PGGTLQTGTAADIALIDLNYQWTVKA 395
S + H ++ + + ST A+IFNL G + G+ ADI + D N T+ A
Sbjct: 362 SVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISA 421
Query: 396 DDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYT 428
S + +F+ G + T G+ VY
Sbjct: 422 KTHHSANDFNIFEGMTVHGVPLVTISRGRVVYE 454
>gnl|CDD|31421 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 48.8 bits (116), Expect = 3e-06
Identities = 79/442 (17%), Positives = 137/442 (30%), Gaps = 78/442 (17%)
Query: 8 NTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67
R + I++ GA+++E+G I+A G + ++ P A + D G PG+IDA
Sbjct: 16 AGRGLPGLGIIED-GAVLIEDGKIVAVGPEEIDI--PAGAEVIDAKGKTVTPGLIDAHTH 72
Query: 68 LTGSPD---EYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124
L E+ S + I+ + F A R+K
Sbjct: 73 LGFGGSRGGEFELREAGASYTEILAAGGGILPL---DRGFTTARDGGLKATALPRLKRAG 129
Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVAL 184
+ + E K + L E G + L S A + A
Sbjct: 130 -----SAGVTTGERKSGYGLDLETEGGHLRAA---------AGLKESRPVAVGSTPLAAH 175
Query: 185 DTHDHFLGSRGVINEGIIANYL----------GLVGIPSISETVPLARDLLIAQHTGGHY 234
+ +R G + R +L A G
Sbjct: 176 GVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIP 235
Query: 235 ---HASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRS-- 289
HA + + A G +++ + + VL P
Sbjct: 236 VKAHAHGAD-----GIKLAIRLGAKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFE 290
Query: 290 --ETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHG 347
E + + ++ G I +DH P S GS+ LE ++ A+RL
Sbjct: 291 LRELDYKPARKLIDAGVKVAIGTDHNP-----------GTSHGSLALE--MALAVRLG-- 335
Query: 348 QQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405
++ ++ ++A + A+ L G+L+ G AD+ + D D ++ I
Sbjct: 336 --MTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWD--------GDPLADIPYFL 385
Query: 406 VFDKEFFTGKVVRTYISGKQVY 427
+ KV GK VY
Sbjct: 386 GLN------KVEAVIKDGKVVY 401
>gnl|CDD|33745 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 48.0 bits (114), Expect = 5e-06
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
+L R+IDP+R IDE+ I + NG I AA P I D G + PG
Sbjct: 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAADD----YPAPAETQIIDADGCIVSPG 58
Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSII-LMPLGMSSFLDEYTFIKYALEEIR 119
+ID V + E G+T+++ G ++F Y + A R
Sbjct: 59 LIDLHVHVYYGGTEGGVRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASRV-R 114
Query: 120 VKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVS 154
+K+ +NV P SN E+ + + E I +
Sbjct: 115 IKAFLNVSPPGLTASN----ELYDPDNIDEDKIHA 145
Score = 33.4 bits (76), Expect = 0.12
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKAD 396
+ L +I A++ PA + L GTL G ADI + L + D
Sbjct: 300 MPLTDVINAVTHNPAVLIGLAEIGTLAPGAFADITVFKLKNRHVEFVD 347
>gnl|CDD|30041 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized
by a variety of different bacteria. The first three
steps of the atrazine dehalogenation pathway are
catalyzed by atrazine chlorohydrolase (AtzA),
hydroxyatrazine ethylaminohydrolase (AtzB), and
N-isopropylammelide N-isopropylaminohydrolase (AtzC).
All three enzymes belong to the superfamily of metal
dependent hydrolases. AtzA and AtzB, beside other
related enzymes are represented in this CD..
Length = 411
Score = 38.6 bits (90), Expect = 0.003
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 7 NNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
N T + R + E G ++VE+G I+A G +P +I D G V +PG+++
Sbjct: 5 NGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVI-DAKGKVVMPGLVNT 61
Score = 32.1 bits (73), Expect = 0.29
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 334 LETMLSAAL--RLFHGQ--QISLKKLIRALSTRPAQIFNLP-GGTLQTGTAADIALIDLN 388
E M AAL +L HG + ++ + + A+ L G+L+ G AD+ LIDL+
Sbjct: 312 FEEMRLAALLQKLAHGDPTALPAEEALEMATIGGAKALGLDEIGSLEVGKKADLILIDLD 371
Query: 389 YQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427
+ D S + V+ G V ++G+ V
Sbjct: 372 GPHLLPVHDPIS---HLVYSA--NGGDVDTVIVNGRVVM 405
>gnl|CDD|30049 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria..
Length = 325
Score = 38.3 bits (89), Expect = 0.004
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 289 SETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQ 348
S + +S E G +DI+ SD+ P AS +L AA RL
Sbjct: 232 SHSGNVSARELAAHGLLDILSSDYVP------------AS--------LLHAAFRLADLG 271
Query: 349 QISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNY 389
SL + + +S PA+ L G++ G AD+ L+D
Sbjct: 272 GWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILVDDMD 313
>gnl|CDD|30039 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate
hydrolase (Imidazolone-5PH) catalyzes the third step in
the histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon..
Length = 371
Score = 38.3 bits (89), Expect = 0.004
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 24 IIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPD---EYSKNI 79
I + +G I A G A +L A P +A D G PG++D L + D E++ +
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60
Query: 80 ---TTLSKEAVAGGITSII 95
+ A GGI S +
Sbjct: 61 AGASYEEILAAGGGILSTV 79
>gnl|CDD|32005 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 37.9 bits (88), Expect = 0.006
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
L N RI +D GA+++E+G I A L P A I D G + VPG ID
Sbjct: 3 ALKNGRIFTGHGVLD-GGAVVIEDGKIEAVVPAEL----PADAEIIDLKGALLVPGFIDL 57
Query: 65 RVTLTGS---PDEYSKN-ITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120
+ G D S + T+++ + G TS +P +++ L++ IK AL IR
Sbjct: 58 HIHGGGGADFMDAGSVETLETMAEAHLRHGTTS--FLPTLITASLEK---IKAALRAIR- 111
Query: 121 KSLINVYPTACLTSNMEGKEISEMR 145
I L ++EG +S +
Sbjct: 112 -EAIAKGGAQILGIHLEGPFLSPEK 135
Score = 30.6 bits (69), Expect = 0.91
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 336 TMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQ 390
TM A L ISL + +R S PA+ L G+++ G AD+ ++D +
Sbjct: 311 TMDEAVRNLVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDLN 367
>gnl|CDD|30050 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown..
Length = 338
Score = 37.9 bits (88), Expect = 0.006
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 12/132 (9%)
Query: 23 AIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITTL 82
+ +ENG I A GA P + I D G PG ID V + Y +
Sbjct: 1 DVAIENGKIAAVGAALAA---PAATQIVDAGGCYVSPGWIDLHVHVYQGGTRYGDRPDMI 57
Query: 83 SKEAVAGGITSII-LMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEI 141
V G+T+++ G + + RV + +N+ + E+
Sbjct: 58 ---GVKSGVTTVVDAGSAGADNIDGFRYTVIERSAT-RVYAFLNISRVGLV----AQDEL 109
Query: 142 SEMRLLQEQGIV 153
+ + E +V
Sbjct: 110 PDPDNIDEDAVV 121
Score = 32.5 bits (74), Expect = 0.25
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKAD 396
+ L+++I A++ PA++ L GTL G AD+ + DL D
Sbjct: 277 MPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKDGRVELVD 324
>gnl|CDD|31762 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 37.2 bits (86), Expect = 0.010
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADA-LNAKFPTSALIHDCTGLVAVPGIID 63
+L+N RI A+ +++G I+A G+DA L A + + D G +PG +D
Sbjct: 8 ILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVD 67
Query: 64 A 64
A
Sbjct: 68 A 68
Score = 31.8 bits (72), Expect = 0.35
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 372 GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYTLE 430
G+L+ G AD A++D + +TV D + KVV T ++GK VY
Sbjct: 491 GSLEPGKLADFAVLDRDP-FTVDPDSIKDT-------------KVVLTIVAGKVVYRAA 535
>gnl|CDD|30034 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall
recycling..
Length = 374
Score = 37.1 bits (86), Expect = 0.010
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
++ N RI+ P D GA++VE+G I+A G + + I D G VPG ID
Sbjct: 2 IIKNARILTPGGLED--GAVLVEDGKIVAIGP---EDELEEADEIIDLKGQYLVPGFIDI 56
Query: 65 RV-------TLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEY 108
+ + G+ + + T+++ G TS +P +++ +E
Sbjct: 57 HIHGGGGADFMDGTAE----ALKTIAEALAKHGTTS--FLPTTVTAPPEEI 101
Score = 32.5 bits (74), Expect = 0.20
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 336 TMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDLNYQ 390
TM A + L++ +R S PA++ L G+L+ G AD+ ++D +
Sbjct: 310 TMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDDLN 366
>gnl|CDD|73255 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics..
Length = 415
Score = 36.0 bits (83), Expect = 0.022
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLN 388
+SL++ +R ++ PA++F L G + G ADI + D +
Sbjct: 335 LSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPD 374
Score = 33.7 bits (77), Expect = 0.092
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
V+ N ++D + + + +G I A G ++ + D GLV PG ID
Sbjct: 3 VIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS----TSAREVIDAAGLVVAPGFID- 57
Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMS 102
+ D L + G+T+++L G+S
Sbjct: 58 ---VHTHYDGQVFWDPDLR-PSSRQGVTTVVLGNCGVS 91
>gnl|CDD|145256 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyse the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 35.3 bits (81), Expect = 0.030
Identities = 56/344 (16%), Positives = 112/344 (32%), Gaps = 50/344 (14%)
Query: 56 VAVPGIIDARVTLTGSP--DEYSK-NITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIK 112
+ +PG+IDA V L E S I T +K + G T+++ P ++ + I
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 113 YAL-EEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNS 171
L +++ + + + E E+ +E I + +
Sbjct: 61 EGLAAAPKLEPNVGLLLKGSVGGRAELGEVVIDGAGEEAKA-----GADLIKVIEDGGKT 115
Query: 172 MKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTG 231
K + + AL HD ++ + N + L +E + L + A+ +G
Sbjct: 116 AKAIDGV--LPALAPHDP-----PTVSHEGLKNEVELAEETEEAEKLGLLVHIHAAEASG 168
Query: 232 GHYHASVISIPQSIALIKH-----AKAHNTKATCGISINNLILNENDVEMYNSLRKVLPP 286
V +I + L+ H +A G I + L+ + L +
Sbjct: 169 E-----VNAILGGVDLLAHCLHLDDEAIELLKEAGSGIAHCPLSNESI-----LHRGGRF 218
Query: 287 LRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH 346
+ + E G R A+ + F+
Sbjct: 219 SLMSGDAQGIGELGSGG----------ARLARL-----ADKGGVVGLGTDGAGLNGKDFY 263
Query: 347 GQ--QISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALID 386
+S + +R + PA+ L G+++ G AD+ ++D
Sbjct: 264 LDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307
>gnl|CDD|30751 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 35.1 bits (80), Expect = 0.035
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 1 MTSFVLNNTRII--DPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAV 58
MT ++ ++ DP I E G +++E+G I+A GA NA+ P + D G + +
Sbjct: 1 MTMLLIRGDLLLTNDPEGRI-EDGDLVIEDGKIVAIGA---NAEGPPDEEVIDAKGKLVL 56
Query: 59 PGIIDA 64
PG ++A
Sbjct: 57 PGFVNA 62
Score = 28.1 bits (62), Expect = 5.1
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 334 LETMLSAAL--RLFHGQQISLKK--LIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLN 388
L M +A L +L G + + + A+ L G+L+ G AD+ ++D +
Sbjct: 316 LREMRTADLLQKLAGGLLAAQLPGEALDMATLGGAKALGLDDIGSLEVGKKADLVVLDAS 375
Query: 389 Y 389
Sbjct: 376 A 376
>gnl|CDD|30043 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases.
YtcJ is a Bacillus subtilis ORF of unknown function.
The Arabidopsis homolog LAF3 has been identified as a
factor required for photochrome A signalling..
Length = 479
Score = 34.2 bits (78), Expect = 0.064
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 23 AIIVENGIILAAGADA-LNAKFPTSALIHDCTGLVAVPGIIDA 64
A+ V +G I+A G+DA A + + D G +PG ID+
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDS 43
>gnl|CDD|31205 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 34.4 bits (79), Expect = 0.065
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 4 FVLNNTRIIDP-SRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGII 62
VL N RI+D + +I + G I + G I+ + + + D G VPG I
Sbjct: 26 LVLKNGRIVDVVTGEIYK-GDIAIAGGRIVGVIGEYR----AEATEVIDAAGRYIVPGFI 80
Query: 63 DARVTLTGSPDEYSK-NITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVK 121
DA + + E S + ++ + G T+++ P +++ L E I++ L+E + +
Sbjct: 81 DAHLHI-----ESSMLTPSEFARAVLPHGTTTVVSDPHEIANVLGEDG-IRFMLDEAK-E 133
Query: 122 SLINVY 127
+ + VY
Sbjct: 134 TPLKVY 139
>gnl|CDD|30047 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit
A; Methanogenic bacteria and archea derive the energy
for autotrophic growth from methanogenesis, the
reduction of CO2 with molecular hydrogen as the
electron donor. FMDH catalyzes the first step in
methanogenesis, the formyl-methanofuran synthesis. In
this step, CO2 is bound to methanofuran and
subsequently reduced to the formyl state with electrons
derived from hydrogen..
Length = 541
Score = 33.7 bits (77), Expect = 0.097
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 LNNTRIIDPSRDID-EVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
+ N + DP I+ E I + +G I+ + + A AK + D +G V + G +D
Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGAKPAK------VIDASGKVVMAGGVDM 54
Query: 65 RVTLTGS 71
+ G
Sbjct: 55 HSHIAGG 61
>gnl|CDD|30051 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides..
Length = 387
Score = 32.9 bits (75), Expect = 0.15
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
++ N + P + + +I I+ A D LN + + D G + VPG ID
Sbjct: 3 LIKNAEVYAPE-YLGKKDILIAGGKIL--AIEDQLNLPGYENVTVVDLHGKILVPGFIDQ 59
Query: 65 RVTLTGSPDE--YSKNI--TTLSKEAVAGGITSII 95
V + G E S TLS + G+T+++
Sbjct: 60 HVHIIGGGGEGGPSTRTPEVTLS-DLTTAGVTTVV 93
>gnl|CDD|33257 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 377
Score = 32.6 bits (74), Expect = 0.24
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 289 SETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH-G 347
S + +S E + G +DI+ SD+ P ++L AA RL G
Sbjct: 279 SHSGNVSARELAQHGLLDILSSDYVP--------------------ASLLHAAFRLADLG 318
Query: 348 QQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNY 389
ISL + + ++ PA+ L G + G AD+ + +
Sbjct: 319 SNISLPQAVALVTKNPARALGLTDRGRIAPGLRADLVRVRRDG 361
>gnl|CDD|30055 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases,
subgroup D is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown..
Length = 381
Score = 32.2 bits (73), Expect = 0.28
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 327 ASFGSIGLETMLSAALRLFHGQQIS--LKKLIRALSTRPAQIFNLPGGTLQTGTAADIAL 384
+S S+ L L A L L + + +L+ + A+ L G ++ G AD A+
Sbjct: 291 SSNISLSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGLNNGEIEAGKRADFAV 350
Query: 385 IDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGK 424
+L + + I +V +ISGK
Sbjct: 351 FELPGPGIKEQAPLQFILH---------AKEVRHLFISGK 381
>gnl|CDD|30046 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction
also removes the guanine base from the pool and
therefore can play a role in the regulation of cellular
GTP and the guanylate nucleotide pool..
Length = 429
Score = 31.7 bits (72), Expect = 0.39
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 18 IDEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARV 66
+ E G I+V +G I+AAG A+ L A + D +PG ID +
Sbjct: 23 VVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHI 72
>gnl|CDD|73254 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea..
Length = 422
Score = 30.9 bits (70), Expect = 0.74
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 51 DCTGLVAVPGIIDARVTLTGSPDEYSKNI-TTLSKEAVAGGITSIILMPLGMSSFLDEYT 109
D G VPG IDA + + E S + +K + G T++I P +++
Sbjct: 1 DAEGKYIVPGFIDAHLHI-----ESSMLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDG 55
Query: 110 FIKYALEEIRVKSLINVY 127
I++ LE+ + K+ ++++
Sbjct: 56 -IEFMLEDAK-KTPLDIF 71
>gnl|CDD|146609 pfam04069, OpuAC, Substrate binding domain of ABC-type glycine
betaine transport system. Part of a high affinity
multicomponent binding-protein-dependent transport
system involved in bacterial osmoregulation. This domain
is often fused to the permease component of the
transporter complex. Family members are often integral
membrane proteins or predicted to be attached to the
membrane by a lipid anchor. Glycine betaine is involved
in protection from high osmolarity environments for
example in Bacillus subtilis. The family member OpuBC is
closely related, and involved in choline transport.
Choline is necessary for the biosynthesis of glycine
betaine. L-carnitine is important for osmoregulation in
Listeria monocytogenes. Family also contains proteins
binding l-proline (ProX), histidine (HisX) and taurine
(TauA).
Length = 256
Score = 30.8 bits (70), Expect = 0.79
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 293 RMSMVEALEKGDIDIIVSDHTPRHMDT 319
+ AL GDID+ + T +
Sbjct: 39 TAVLFAALASGDIDLYPEEWTGTTYEA 65
>gnl|CDD|30052 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown..
Length = 359
Score = 30.6 bits (69), Expect = 0.94
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 317 MDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTL 374
+ + FA +S + L+ +S ++ ++A++ PA+I + G+L
Sbjct: 267 LKKGGVAFAISSDHPVLNIRNLNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSL 326
Query: 375 QTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427
+ G AD+ + + D + T K + YI G+ VY
Sbjct: 327 EPGKDADLVVWN--------GDPLEP------------TSKPEQVYIDGRLVY 359
Score = 30.6 bits (69), Expect = 0.95
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 26/94 (27%)
Query: 28 NGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTL----TGSPDEYSKNITTLS 83
+G I+A GA P A + D G PG+IDA L G E S
Sbjct: 1 DGKIVAVGA---EITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETD 57
Query: 84 -------------------KEAVAGGITSIILMP 98
K A AGG+T++ ++P
Sbjct: 58 PVTPHVRAIDGINPDDEAFKRARAGGVTTVQVLP 91
>gnl|CDD|39095 KOG3892, KOG3892, KOG3892, N-acetyl-glucosamine-6-phosphate
deacetylase [Carbohydrate transport and metabolism].
Length = 407
Score = 30.0 bits (67), Expect = 1.4
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 51 DCTGLVAVPGIIDAR------VTLTGSPDEYSKNITTLSKEAVAGGITS 93
DC G + PG ID + V + ++ + + ++++ ++ G+TS
Sbjct: 58 DCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGVALVARQLLSHGVTS 106
>gnl|CDD|33451 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 29.2 bits (65), Expect = 2.4
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
V+ + I D + + + + +G+I A AL+ + D G + PG ID
Sbjct: 9 VIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEV--DAAGRIVAPGFIDV 66
Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMS 102
+ + + + +V G+T+++L G+S
Sbjct: 67 H-----THYDAEVLLDPGLRPSVRHGVTTVVLGNCGIS 99
>gnl|CDD|73214 cd00550, ArsA_ATPase, Oxyanion-translocating ATPase (ArsA). This
ATPase is involved in transport of arsenite, antimonite
or other oxyanions across biological membranes in all
three kingdoms of life. ArsA contains a highly
conserved AAA motif present in the AAA+ ATPase
superfamily associated with a variety of cellular
activities. To form a functional ATP-driven pump, ArsA
interacts with the permease ArsB, which is a
channel-forming integral membrane protein. One of the
most interesting features of ArsA is the allosteric
activation by its transport substrates. A divalent
cation, typically Mg2+, is required for its enzymatic
activity..
Length = 254
Score = 29.1 bits (65), Expect = 2.5
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 239 ISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVE 298
+ IP+ ++L + +A A GI ++ +I+N ++LP + +
Sbjct: 166 VCIPEKMSLYETERAIQELAKYGIDVDAVIVN-----------QLLPEDVTNCPFLEARR 214
Query: 299 ALEKGDIDIIVSDHTPRHMDT-KLLP 323
+++ ++ I + + LLP
Sbjct: 215 EIQQKYLEEIEELFSDLPVAKLPLLP 240
>gnl|CDD|34031 COG4309, COG4309, Uncharacterized conserved protein [Function
unknown].
Length = 98
Score = 28.4 bits (63), Expect = 3.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 282 KVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLET 336
+ +PP SM+ L++G+ I+SDH PR + +L FG LE
Sbjct: 13 RPIPPRERHPLIFSMLGKLKEGESLEIISDHDPRPLRYQLSTEFPGKFGWEYLEN 67
>gnl|CDD|34483 COG4874, COG4874, Uncharacterized protein conserved in bacteria
containing a pentein-type domain [Function unknown].
Length = 318
Score = 28.5 bits (63), Expect = 4.1
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 288 RSETERMSMVEALEKGDIDIIVSDHT-PRHMDTKLLP---FAEASFGSIGLETMLSAALR 343
R+ +E +MVE L + +D+++ D T + P F+ G + L M A R
Sbjct: 54 RAMSEFNAMVEGLRQAGVDVVIFDDTGQGETPDSVFPNNWFSTHEAGEVFLYPMACANRR 113
Query: 344 L--------FHGQQISLKKLIRALSTRPAQIF 367
L Q ++KK+ L+ Q F
Sbjct: 114 LERPEALIDTLKQGFAVKKVHDYLALEEQQAF 145
>gnl|CDD|31393 COG1200, RecG, RecG-like helicase [DNA replication, recombination,
and repair / Transcription].
Length = 677
Score = 27.1 bits (60), Expect = 9.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 277 YNSLRKVLPPLRSE----------TERMSMVEALEKGDIDIIVSDH 312
Y SLRK L PL R ++E L G+IDI+V H
Sbjct: 328 YESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH 373
>gnl|CDD|111283 pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam
family represents a conserved domain, which is sometimes
repeated, in an anion-transporting ATPase. The ATPase is
involved in the removal of arsenate, antimonite, and
arsenate from the cell.
Length = 304
Score = 26.9 bits (60), Expect = 9.9
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 239 ISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVE 298
+ IP+ ++L + +A A GI ++ +I+N +VLP + +
Sbjct: 212 VCIPEKMSLYETERAIQELAKYGIDVDAVIVN-----------QVLPETEQDCPFCEARK 260
Query: 299 ALEKGDIDIIVSDHTPRHMDT-KLLP 323
+++ + I + + LLP
Sbjct: 261 EIQQKYLKEIEELFSDLPVAKLPLLP 286
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.134 0.376
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,943,776
Number of extensions: 263556
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 59
Length of query: 431
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 334
Effective length of database: 4,167,664
Effective search space: 1391999776
Effective search space used: 1391999776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)