RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus
Liberibacter asiaticus str. psy62]
(431 letters)
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 492 bits (1268), Expect = e-139
Identities = 198/426 (46%), Positives = 284/426 (66%), Gaps = 3/426 (0%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
+L N RIIDPSR +DE+G +++E+G+I+AAG A N P A I DC G PG++DA
Sbjct: 6 LLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDA 65
Query: 65 RVTLTGSP-DEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSL 123
RV G P E+ + I + S+ A AGG+TSII+MP +D+ +++ R ++
Sbjct: 66 RV-FVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAI 123
Query: 124 INVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVA 183
+N++P A +T + G+E++E LL+ G V+F S+ +TQV+ ++ YA +A++
Sbjct: 124 VNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTDGRRSVANTQVMRRALTYARDFDAVIV 183
Query: 184 LDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQ 243
+T D LG GV+NEG+ A++LGL GIP +E +PL RDL +A T G YHA+ IS +
Sbjct: 184 HETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAE 243
Query: 244 SIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKG 303
S ++ AK K T G+SIN+L LNEND+ Y + K+ PPLR+E +R++MVEA+ G
Sbjct: 244 SAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASG 303
Query: 304 DIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRP 363
IDIIVS H P+ +DTK LPF+EA+ G+IGLET+L+AALRL+H ++ L +LI ALSTRP
Sbjct: 304 TIDIIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRP 363
Query: 364 AQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISG 423
A+IF LP GTL+ G ADI +IDL+ W V +D+ S KNT F++ F G+VVRT ++G
Sbjct: 364 AEIFGLPAGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPFEEARFQGRVVRTIVAG 423
Query: 424 KQVYTL 429
K VY L
Sbjct: 424 KTVYEL 429
>gnl|CDD|181796 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 316 bits (813), Expect = 6e-87
Identities = 150/427 (35%), Positives = 236/427 (55%), Gaps = 7/427 (1%)
Query: 2 TSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGI 61
++ N R+IDP +DEV +++++G I A G + A + D TGLV PG+
Sbjct: 1 MMILIKNGRVIDPK-GLDEVADVLIDDGKIAAIGENI----EAEGAEVIDATGLVVAPGL 55
Query: 62 IDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVK 121
+D V L E + I T S+ A AGG T+++ MP +D ++Y L+ +
Sbjct: 56 VDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEA 114
Query: 122 SLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAI 181
L++V P +T + G+E++E L+E G+V+F + + D +++ +++YA L+ +
Sbjct: 115 GLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSDDGIPVQDARLMRRALEYAKALDLL 174
Query: 182 VALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISI 241
+A D L GV+NEG ++ LGL GIP+++E V +ARD+L+A+ TG H +S
Sbjct: 175 IAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVST 234
Query: 242 PQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALE 301
S+ LI+ AKA K T ++ ++L+L + D+ Y+ KV PPLR+E +R +++E L+
Sbjct: 235 AGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLK 294
Query: 302 KGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAAL-RLFHGQQISLKKLIRALS 360
G ID I +DH P + K F A FG GLET LS L + L++L+ ++
Sbjct: 295 DGTIDAIATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMT 354
Query: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY 420
PA+I LP G L G AD+ + D +WTV +D +S KNT F GKVV T
Sbjct: 355 INPARILGLPAGPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTI 414
Query: 421 ISGKQVY 427
+ GK VY
Sbjct: 415 VDGKIVY 421
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 266 bits (683), Expect = 6e-72
Identities = 143/420 (34%), Positives = 219/420 (52%), Gaps = 4/420 (0%)
Query: 8 NTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67
R+IDP+ D + V G I A G A F I D +GL+ PG++D
Sbjct: 7 GGRLIDPAAGTDRQADLYVAAGKIAAIGQAP--AGFNADKTI-DASGLIVCPGLVDLSAR 63
Query: 68 LTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLINVY 127
L EY + + AVAGG+TS++ P LDE ++ R + +VY
Sbjct: 64 LREPGYEYKATLESEMAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVY 122
Query: 128 PTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTH 187
P LT ++G+ ++EM L E G V F Q+ + + DTQVLL +++YA V L
Sbjct: 123 PLGALTVGLKGEVLTEMVELTEAGCVGFSQANVPVVDTQVLLRALQYASTFGFTVWLRPL 182
Query: 188 DHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIAL 247
D FLG GV G +A+ LGL G+P +ET+ L + + TG H + +S +AL
Sbjct: 183 DAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVAL 242
Query: 248 IKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDI 307
++ AKA TC + +N++ L + D+ ++S ++ PPLRS+ +R ++ AL G ID
Sbjct: 243 VRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDA 302
Query: 308 IVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIF 367
I SDHTP D KLLPFAEA+ G+ GLE +L L+ ++ L + + +++ PA++
Sbjct: 303 ICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVL 362
Query: 368 NLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427
LP G L G AD+ + D + W V+ + S KNT F G+V T ++G+ +
Sbjct: 363 GLPAGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKNTPFLGYELPGRVRATLVAGQVAF 422
>gnl|CDD|162070 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. All proteins described by this model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase.
Length = 411
Score = 266 bits (681), Expect = 9e-72
Identities = 150/410 (36%), Positives = 219/410 (53%), Gaps = 8/410 (1%)
Query: 22 GAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITT 81
I+VE G I G + P A + D GL+ +PG ID V L +EY ++I +
Sbjct: 6 VDILVEGGRIKKIGKLRI----PPDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIES 61
Query: 82 LSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEI 141
SK A GG T++ MP +D +++ L+ ++ SL++V+ +T +GKE+
Sbjct: 62 GSKAAAHGGFTTVADMP-NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKEL 120
Query: 142 SEMRLLQEQGIV--SFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINE 199
+E L+E G V F + D + +++YA + +AL D L GV++E
Sbjct: 121 TEAYELKEAGAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHE 180
Query: 200 GIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKAT 259
G A LGL P +E V +AR L +A+H G H IS +S+ LI AK+ K T
Sbjct: 181 GPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGIKIT 240
Query: 260 CGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDT 319
++ ++L+L+E DV + KV PPLR + +R++++E L+ G IDII +DH P ++
Sbjct: 241 AEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEE 300
Query: 320 KLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGT 378
K FA A G GLET L L+L ISLK LIR LS PA+IF LP GTL+ G
Sbjct: 301 KTKEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGN 360
Query: 379 AADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYT 428
ADI + DL +WT+ A+ S KNT F+ GK + T + GK VY
Sbjct: 361 PADITVFDLKKEWTINAETFYSKAKNTPFEGMSLKGKPIATILRGKVVYE 410
>gnl|CDD|181418 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 199 bits (507), Expect = 1e-51
Identities = 116/408 (28%), Positives = 194/408 (47%), Gaps = 27/408 (6%)
Query: 24 IIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYS-KNITTL 82
I +++G I G+D + I D G +P ++D V+L D S KN+ +L
Sbjct: 1 IRIKDGKITEIGSDLKGEE------ILDAKGKTLLPALVDLNVSLKN--DSLSSKNLKSL 52
Query: 83 SKEAVAGGITSIILMPLGMSSFLDEYT--FIKYALEEIRVKSLINVYPTACLTSNMEGKE 140
E + GG+ SI+L P + +E I A E+ + ++P+ E +
Sbjct: 53 ENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELP----MQIFPSIRALD--EDGK 106
Query: 141 ISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEG 200
+S + L ++G + S S D +L +YA ML+ + D GV+N+G
Sbjct: 107 LSNIATLLKKGAKALELS--SDLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDG 164
Query: 201 IIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATC 260
++ LGL GIPSI+ET +A+ +A+ +++P+S+ L+ K+ K
Sbjct: 165 ELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLK 224
Query: 261 GISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTK 320
+SI++LIL+++ E +N+ K+ PPLRS+ +R++++EAL++G ID + S H+ + K
Sbjct: 225 EVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKK 284
Query: 321 LLPFAEASFGSIGLETMLSAALRLFHGQQ-ISLKKLIRALSTRPAQIFNLPGGTLQTGTA 379
L F EA+FG + S + I+ +L R S PAQ L G ++ G
Sbjct: 285 DLAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNSGEIEVGKE 344
Query: 380 ADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427
AD+ L D N DD S++ GK+ I GK
Sbjct: 345 ADLVLFDPNES--TIIDDNFSLYSGDELY-----GKIEAVIIKGKLYL 385
>gnl|CDD|180948 PRK07369, PRK07369, dihydroorotase; Provisional.
Length = 418
Score = 196 bits (500), Expect = 1e-50
Identities = 125/424 (29%), Positives = 210/424 (49%), Gaps = 9/424 (2%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
M++ +L R++DP + D + +++E+G I A P I D +GL+ PG
Sbjct: 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHI--DPIPPDTQIIDASGLILGPG 58
Query: 61 IIDARVTLTGSP-DEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIR 119
++D +G P E + + +L+ A AGG T + ++P LD + ++ +
Sbjct: 59 LVDLYSH-SGEPGFEERETLASLAAAAAAGGFTRVAILPDT-FPPLDNPATLARLQQQAQ 116
Query: 120 VKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLN 179
+ ++ LT +GK+++E+ L G+V F + + +L ++Y L
Sbjct: 117 QIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTDG-QPLENLALLRRLLEYLKPLG 175
Query: 180 AIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVI 239
VAL D L GV+ EG++A LGL G P+ +ET LA L + G H I
Sbjct: 176 KPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRI 235
Query: 240 SIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYN-SLRKVLPPLRSETERMSMVE 298
S +S+ LI AKA T + +L+L+ + Y+ +LR + PPL + ++R +++E
Sbjct: 236 STARSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLR-LDPPLGNPSDRQALIE 294
Query: 299 ALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAAL-RLFHGQQISLKKLIR 357
+ G ID I DH P + K + FAEA G+IGLE L L ++S +L +
Sbjct: 295 GVRTGVIDAIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQ 354
Query: 358 ALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVV 417
ALST PA+ +L G A++ L D WTV A + S+ +NT + + G+V+
Sbjct: 355 ALSTNPARCLGQEPPSLAPGQPAELILFDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRVL 414
Query: 418 RTYI 421
+T++
Sbjct: 415 QTWV 418
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 152 bits (386), Expect = 1e-37
Identities = 117/446 (26%), Positives = 185/446 (41%), Gaps = 37/446 (8%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
++ R+I P+ + + V+ G I A G D L +A I D GLV PG++D
Sbjct: 3 IIRGGRVILPNGE--READVGVKGGKIAAIGPDIL----GPAAKIIDAGGLVVFPGVVDT 56
Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124
V + + T ++ A AGGIT+ I MPL ++ E + K +
Sbjct: 57 HVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAV 116
Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSF--IQSPMSIH-----DTQVLLNSMKYAHM 177
+V L + ++R L E G+V F SP D L M+
Sbjct: 117 DVGFWGGLVP----YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELAR 172
Query: 178 LNAIVALDTHDHFLGSRGVINEGIIANYLGLVGI-------PSISETVPLARDLLIAQHT 230
L ++ + + + S G A G VG P +E + R L +A+ T
Sbjct: 173 LGQLLLVHAENPAITSA----LGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT 228
Query: 231 GGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSE 290
G H +S +++ LI AK T + L L +V +L K PP+R
Sbjct: 229 GCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDL 288
Query: 291 TERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSI-----GLETMLSAALRLF 345
+ + EAL G ID +VSDH+P D K ++G I L+ M A
Sbjct: 289 ANQEGLWEALLNGLIDCVVSDHSPCTPDLKRAGDFFKAWGGIAGLQSTLDVMFDEA---V 345
Query: 346 HGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKN 404
+ + L+ + R ++T PA+ F L G + G AD +D + +T+ DD+ HK
Sbjct: 346 QKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPDDLYYRHKV 405
Query: 405 TVFDKEFFTGKVVRTYISGKQVYTLE 430
+ + G+V TY+ G+ +Y E
Sbjct: 406 SPYVGRTIGGRVRATYLRGQCIYDDE 431
>gnl|CDD|180455 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 152 bits (386), Expect = 2e-37
Identities = 123/426 (28%), Positives = 186/426 (43%), Gaps = 33/426 (7%)
Query: 24 IIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITTLS 83
I ++NG I A A +++ P +I D GL PG+ID V + + T S
Sbjct: 23 IGIKNGKI-AEIAPEISS--PAREII-DADGLYVFPGMIDVHVHFNEPGRTHWEGFATGS 78
Query: 84 KEAVAGGITSIILMPL-GMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEIS 142
AGG T+ MPL + + A E R KS ++ L +
Sbjct: 79 AALAAGGCTTYFDMPLNSIPPTVTREALDAKA-ELARQKSAVDFALWGGLVPG----NLE 133
Query: 143 EMRLLQEQGIVSFIQSPMS--------IHDTQVLLNSMKYAHMLNAIVAL----DTHDHF 190
+R L E G++ F ++ MS D L MK L I+AL D
Sbjct: 134 HLRELAEAGVIGF-KAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRH 192
Query: 191 LGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKH 250
L + +G L P ++E + R LL AQ TG H IS +++ALI
Sbjct: 193 L-TTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVHISSGKAVALIAE 251
Query: 251 AKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVS 310
AK + + L+ E D E ++ K PPLRS +++ + L G+ID+I S
Sbjct: 252 AKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISS 311
Query: 311 DHTPRHMDTKLLPFAEASFGSIG-----LETMLSAALRLFHGQQISLKKLIRALSTRPAQ 365
DH+P + K +G I L ML+ + + I L+ + R L+T PA+
Sbjct: 312 DHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEG---YIERGIPLETIARLLATNPAK 368
Query: 366 IFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGK 424
F LP G L+ G AD L+DL+ +T+ +D+ HK + ++ F G+VV TY+ G+
Sbjct: 369 RFGLPQKGRLEVGADADFVLVDLDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQ 428
Query: 425 QVYTLE 430
VY
Sbjct: 429 CVYQDG 434
>gnl|CDD|179801 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 119 bits (299), Expect = 2e-27
Identities = 108/424 (25%), Positives = 177/424 (41%), Gaps = 48/424 (11%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
L RI++ G I +ENG I L K +I G++ +PG+ID
Sbjct: 6 FLLKGRIVE--------GGIGIENGRISKISLRDLKGK----EVIKVKGGII-LPGLIDV 52
Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124
V L + Y + I + +K A+ GGIT + MP +DE T+ K + KS
Sbjct: 53 HVHLRDFEESYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEK-RMRIAEKKSYA 111
Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMK--YAHMLNAIV 182
+ Y L + K + + + + + + YA IV
Sbjct: 112 D-YALNFLIAGNCEKAEEIKADFYKIFMGAST--------GGIFSENFEVDYACAPG-IV 161
Query: 183 ALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIP 242
++ D +I + P +E V + R L + H IS
Sbjct: 162 SVHAEDP----------ELIREFPER---PPEAEVVAIERALEAGKKLKKPLHICHISTK 208
Query: 243 QSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEK 302
+ LI K++ + ++ ++L L D E N L KV PPLRSE +R ++ E K
Sbjct: 209 DGLKLIL--KSNLPWVSFEVTPHHLFLTRKDYER-NPLLKVYPPLRSEEDRKALWENFSK 265
Query: 303 GDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTR 362
I II SDH P ++ K + G GLET + L + ISL ++ +
Sbjct: 266 --IPIIASDHAPHTLEDK----EAGAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDN 319
Query: 363 PAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYIS 422
PA+IF + ++ G A+ A+ D+ +WT+KA+++ + T ++ GKV+ T +
Sbjct: 320 PARIFGIKNYGIEEGNYANFAVFDMKKEWTIKAEELYTKAGWTPYEGFKLKGKVIMTILR 379
Query: 423 GKQV 426
G+ V
Sbjct: 380 GEVV 383
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 117 bits (295), Expect = 5e-27
Identities = 102/409 (24%), Positives = 176/409 (43%), Gaps = 26/409 (6%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
M +L + R+ + + + ++ G I A G D +S + D G++ +PG
Sbjct: 1 MRDALLKDGRV--YYNNSLQPRDVRIDGGKITAVGKDL---DGSSSEEVIDARGMLLLPG 55
Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120
ID V + + T S+ A AGG+T+++ P +D +F E
Sbjct: 56 GIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESF-DEKAELAAR 114
Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQ-------SPMSIHDTQVLLNSMK 173
KS+++ +T N + E L E+G+ + + M I D ++ ++
Sbjct: 115 KSIVDFGINGGVTGNWDPLE-----SLWERGVFALGEIFMADSTGGMGI-DEELFEEALA 168
Query: 174 YAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGI-PSISETVPLARDLLIAQHTGG 232
A L + + D L A+ P+ +E + R L +A TG
Sbjct: 169 EAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGA 228
Query: 233 HYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETE 292
H + IS P+ + + TC ++ ++L L+ D E + K+ PPLRSE
Sbjct: 229 RIHIAHISTPEGVDAAR-----REGITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKR 283
Query: 293 RMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISL 352
R ++ E L G ID++ SDH P + K +A G G+ETML L ++ L
Sbjct: 284 REALWERLNDGTIDVVASDHAPHTREEKDADIWDAPSGVPGVETMLPLLLAAVRKNRLPL 343
Query: 353 KKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSS 400
+++ + PA+IF L G G + G AD+ L+D + ++ DD+ S
Sbjct: 344 ERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDAAREIRGDDLHS 392
>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional.
Length = 449
Score = 112 bits (282), Expect = 1e-25
Identities = 105/451 (23%), Positives = 184/451 (40%), Gaps = 50/451 (11%)
Query: 7 NNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARV 66
N T I++ + ++ V+ G I A G D + + D +GLV PG++DA
Sbjct: 9 NGTVILENEARVVDIA---VKGGKIAAIGQD-----LGDAKEVMDASGLVVSPGMVDAHT 60
Query: 67 TLTGSPDEYSKNITTLSKEAVAGGITSIILMPLG-MSSFLDEYTF-IKYALEE----IRV 120
++ + + T ++ A GGIT++I MPL + + +D + +K+ + I
Sbjct: 61 HISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 120
Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSF-----------IQSP-MSIHDTQVL 168
L + + + L E G+V F I + ++D Q
Sbjct: 121 AQLGGLVSY----------NLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQ-F 169
Query: 169 LNSMKYAHMLNAIVALDTHDHF----LGSRGVINEGIIANYLGLVGIPSISETVPLARDL 224
+ L V + + LG EG + + + P +E + R L
Sbjct: 170 YKGAQKLGELGQPVLVHCENALICDELGEEAK-REGRVTAHDYVASRPVFTEVEAIRRVL 228
Query: 225 LIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVL 284
+A+ G H IS P+ + + A+ TC + +L+ + E +L K
Sbjct: 229 YLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCS 288
Query: 285 PPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLET----MLSA 340
PP+R + M E L G+ID +VSDH+P + K EA G GL+ M
Sbjct: 289 PPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDE 348
Query: 341 ALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMS 399
A++ + +SL + ++T A IF L G + G AD I N + +K +D+
Sbjct: 349 AVQ---KRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNEDLE 405
Query: 400 SIHKNTVFDKEFFTGKVVRTYISGKQVYTLE 430
HK + + ++ +T + G +Y +E
Sbjct: 406 YRHKVSPYVGRTIGARITKTILRGDVIYDIE 436
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 98.7 bits (246), Expect = 3e-21
Identities = 121/459 (26%), Positives = 191/459 (41%), Gaps = 47/459 (10%)
Query: 2 TSFVLNNTRIIDPSRDIDEVGAIIVENGIILA-AGADALNAKFPTSALIHDCTGLVAVPG 60
FVL + R++ P+ I GA+ VE G I++ + ++ D V +PG
Sbjct: 44 PHFVLYSKRVVTPAGVI--PGAVEVEGGRIVSVTKEEEAPKSQKKPHVL-DYGNAVVMPG 100
Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPL-GMSSFLDEYTFIKYALEEIR 119
+ID V L + T +K A AGGIT+++ MPL S T + +E +
Sbjct: 101 LIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETL-ELKIEAAK 159
Query: 120 VKSLINVYPTACLTSNMEGKEISEMRLLQEQGIV---SFIQSPMSIHDTQVLLNSMKYAH 176
K ++V L LL + G + SF+ P I+D H
Sbjct: 160 GKLYVDVGFWGGLVPENAHNASVLEELL-DAGALGLKSFM-CPSGIND----FPMTTATH 213
Query: 177 MLNAIVALDTHDHFL------GSRGVINEGIIAN---YLGLVGIPSISETVPLARDLL-I 226
+ A+ L + L S + + A+ Y + S R LL +
Sbjct: 214 IKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEV 273
Query: 227 AQHT-------GGHYHASVIS-IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYN 278
A+ T G H H +S S+ LIK AKA T + L + ++ +
Sbjct: 274 AKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGD 333
Query: 279 SLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLP---FAEASFGSIGLE 335
+ K PP+R R + +AL GDID++ SDH+P D KLL F A G L+
Sbjct: 334 TRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQ 393
Query: 336 TMLSAALRLFHGQQ--ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWT 392
+L A G+ ++L++L R S RPA++ L G + G ADI + D ++
Sbjct: 394 FVLPATWT--AGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFV 451
Query: 393 VKADDMSSI-HKNTVFDKEF---FTGKVVRTYISGKQVY 427
+ D+ I HK+ +GKV+ T++ G V+
Sbjct: 452 L--DESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVF 488
>gnl|CDD|181042 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 85.9 bits (213), Expect = 2e-17
Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 9/174 (5%)
Query: 259 TCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMD 318
T ++ +L+LN + E +L ++ PPLRS + ++ +AL G ID I +DH P ++
Sbjct: 251 TAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLE 310
Query: 319 TKLLPFAEASFGSIGLET----MLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GT 373
K P+ + G G+ET ML+AA+R + ++ +++R +ST A+ + +P G
Sbjct: 311 EKAQPYPNSPSGMPGVETSLPLMLTAAMR----GKCTVAQVVRWMSTAVARAYGIPNKGR 366
Query: 374 LQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427
+ G AD+ L+DLN V+ +++ + + F+ TG V T + G+ V+
Sbjct: 367 IAPGYDADLVLVDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVF 420
Score = 51.2 bits (123), Expect = 5e-07
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
M S ++ N RI+ PS ++ +G ++VE+G I+A + + D GL +PG
Sbjct: 2 MMSLLIRNARILLPSGELL-LGDVLVEDGKIVAIAPEISA---TAVDTVIDAEGLTLLPG 57
Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMP 98
+ID +V E+ +++ T S+ GG+TS + MP
Sbjct: 58 VIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP 95
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 84.9 bits (211), Expect = 3e-17
Identities = 55/202 (27%), Positives = 107/202 (52%), Gaps = 1/202 (0%)
Query: 227 AQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPP 286
A+ G H IS + ++L ++ + T + +++L +++D +L K P
Sbjct: 225 AKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPA 284
Query: 287 LRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH 346
+++ ++R ++ +AL ID+I +DH P + K P+ +A G ++ L A L L H
Sbjct: 285 IKTASDREALRQALADDRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLELVH 344
Query: 347 GQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405
++SL+K++ S PA +F++ G ++ G AD+ L+DLN WTV +++ +
Sbjct: 345 EGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKENILYKCGWS 404
Query: 406 VFDKEFFTGKVVRTYISGKQVY 427
F+ F +V T+++G+ VY
Sbjct: 405 PFEGRTFRSRVATTFVNGQLVY 426
Score = 47.9 bits (115), Expect = 5e-06
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGII--LAAGADALNAKFPTSALIHDCTGLVAV 58
M ++ N RI++ + + G +++ENG I +A+ A +A + D G +
Sbjct: 1 MKRILIKNARIVNEGKIFE--GDVLIENGRIAKIASSISAKSA-----DTVIDAAGRYLL 53
Query: 59 PGIIDARV-----TLTGSPDEYSKNITTLSKEAVAGGITSIILMP 98
PG+ID +V LT + +I + S+ AVAGGITS + MP
Sbjct: 54 PGMIDDQVHFREPGLT-----HKGDIASESRAAVAGGITSFMEMP 93
>gnl|CDD|178990 PRK00369, pyrC, dihydroorotase; Provisional.
Length = 392
Score = 82.9 bits (205), Expect = 2e-16
Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 48/339 (14%)
Query: 54 GLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKY 113
G + +PG ID V L G Y +++ + + EA GG+T + MP L+ I
Sbjct: 42 GTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-NTIPPLNTPEAITE 100
Query: 114 ALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMK 173
L E+ S ++ + + +T + E ++ ++ I + P + + +K
Sbjct: 101 KLAELEYYSRVDYFVYSGVTKDPE--KVDKL------PIAGYKIFPEDLEREETFRVLLK 152
Query: 174 YAHMLNAIVALDTHDHFLGSRGVIN----EGIIANYLGLVGIPSISETVPLARDLLIAQH 229
+ L I+ + +R + E Y+
Sbjct: 153 -SRKL-KILHPEVPLALKSNRKLRRNCWYEIAALYYV----------------------K 188
Query: 230 TGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRS 289
+ H + S P+++ L K T I+ ++L++N + L KV PP+R
Sbjct: 189 DYQNVHITHASNPRTVRLAK-----ELGFTVDITPHHLLVNGEK----DCLTKVNPPIRD 239
Query: 290 ETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQ 349
ER+ +++AL ++D I SDH P KL P+ G L L
Sbjct: 240 INERLWLLQAL--SEVDAIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFIYTLVSKGI 297
Query: 350 ISLKKLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLN 388
+S+ + + +ST PA+I +P G ++ G A+ +I
Sbjct: 298 LSIDRAVELISTNPARILGIPYGEIKEGYRANFTVIQFE 336
>gnl|CDD|162669 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 80.9 bits (200), Expect = 6e-16
Identities = 106/437 (24%), Positives = 179/437 (40%), Gaps = 53/437 (12%)
Query: 24 IIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTL------TGSPDEYSK 77
+++E G I+A G N P + D TG +PG ID L T + D
Sbjct: 19 VLIEGGKIVAVGR---NLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTAD---- 71
Query: 78 NITTLSKEAVAGGITSIILM--PLGMSSFLDEY-TFIKYALEEIRVKSLINVYPTACLTS 134
+ T +K A AGG T+II P S + T+ + A KS+I+ +T
Sbjct: 72 DFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKA----EGKSVIDYGFHMMITH 127
Query: 135 -NMEGKEISEMRLLQEQGIVSF-----IQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHD 188
N E E + L E+GI SF ++ + + D + L +K A L A++ + +
Sbjct: 128 WNDEVLE-EHIPELVEEGITSFKVFMAYKNLLMVDDEE-LFEILKRAKELGALLQVHAEN 185
Query: 189 HFLGSRGV---INEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSI 245
+ + + +G + P SE +AR + +A + +S ++
Sbjct: 186 GDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVSTASAV 245
Query: 246 ALIKHAKAHNTKA---TC--GISINNLILNENDVEMYNSLRKVL-PPLRSETERMSMVEA 299
I A+ TC + +++ I ++ E + V PPLR + ++ ++ A
Sbjct: 246 DEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFE---GAKYVCSPPLREKEDQDALWSA 302
Query: 300 LEKGDIDIIVSDHTPRHMDTKLL----PFAEASFGSIGLET----MLSAALRLFHGQQIS 351
L G + + SDH P + K F + G G+E + + +I+
Sbjct: 303 LSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVA---TGRIT 359
Query: 352 LKKLIRALSTRPAQIFNL-P-GGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDK 409
L+K + ST PA+IFN+ P GT+ G+ ADI + D N + A+ F+
Sbjct: 360 LEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYNPFEG 419
Query: 410 EFFTGKVVRTYISGKQV 426
G VV G+ V
Sbjct: 420 FKVQGAVVSVLSRGRVV 436
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 80.3 bits (199), Expect = 8e-16
Identities = 54/207 (26%), Positives = 104/207 (50%), Gaps = 5/207 (2%)
Query: 222 RDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDV-EMYNSL 280
R + +A+ TG H +S + I + K AT ++ ++L L + E +L
Sbjct: 218 RLVRLARETGRRIHVLHVSTAEEIDFLADHK---DVATVEVTPHHLTLAAPECYERLGTL 274
Query: 281 RKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSA 340
++ PP+R R + + +G +D++ SDH P ++ K P+ + G G++T++
Sbjct: 275 AQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPI 334
Query: 341 ALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMS 399
L + ++SL++ + S PA+IF + G G + G AD ++DL + T+ + ++
Sbjct: 335 MLDHVNAGRLSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNEWIA 394
Query: 400 SIHKNTVFDKEFFTGKVVRTYISGKQV 426
S T +D + TG V T + G++V
Sbjct: 395 SRCGWTPYDGKEVTGWPVGTIVRGQRV 421
Score = 46.8 bits (112), Expect = 1e-05
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 16 RDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEY 75
DI I G + A A + DC GL +PG+ID++V E+
Sbjct: 23 ADIGIRDGRIAAIGDLSGASAGE----------VIDCRGLHVLPGVIDSQVHFREPGLEH 72
Query: 76 SKNITTLSKEAVAGGITSIILMP 98
+++ T S+ AV GG+T++ MP
Sbjct: 73 KEDLETGSRAAVLGGVTAVFEMP 95
>gnl|CDD|181388 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 75.2 bits (186), Expect = 3e-14
Identities = 113/505 (22%), Positives = 188/505 (37%), Gaps = 155/505 (30%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
++ N ++ +++E+G I A GA+ L + + D TG +PG ID
Sbjct: 4 LIKNGTVVTADDTYK--ADVLIEDGKIAAIGAN-LGDE------VIDATGKYVMPGGIDP 54
Query: 65 RVTL------TGSPDEYSKNITTLSKEAVAGGITSII---LMPLGMSSFLDEYTFIKYAL 115
+ T S D++ T ++ A GG T+II L P G S ++ AL
Sbjct: 55 HTHMEMPFGGTVSSDDF----ETGTRAAACGGTTTIIDFALQPKGQS--------LREAL 102
Query: 116 EEIRVKSLINVYPTACLTSNMEGKEIS-----------------EMRLLQEQGIVSF--- 155
E K+ GK + EM L E+GI SF
Sbjct: 103 EAWHGKA--------------AGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLF 148
Query: 156 --IQSPMSIHDTQVLLNSMKYAHMLNAIVAL--DTHDHFLGSRGVINEGIIANYLGLVGI 211
+ + + D + LL +++ A L A+ + + D I
Sbjct: 149 MAYKGALMLDDDE-LLRALQRAAELGALPMVHAENGD-------AIAY------------ 188
Query: 212 PSISETVPLARDLLIAQHTGGHYH-------------------ASVISIP---------Q 243
L LL TG YH A + P +
Sbjct: 189 --------LQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHVSCKE 240
Query: 244 SIALIKHAKAHNTKA---TCGISINNLILNENDVE---MYNSLRKVL-PPLRSETERMSM 296
++ I+ A+A + TC L+L+E++ + + + V+ PPLR + + ++
Sbjct: 241 ALEAIRRARARGQRVFGETC---PQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDAL 297
Query: 297 VEALEKGDIDIIVSDHTPRHMDTKLL----PFAEASFGSIGLETMLSAALRLFHGQ---- 348
L+ GD+ ++ +DH P + K F + G+ G+E + L +
Sbjct: 298 WRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMP----LLFSEGVMT 353
Query: 349 -QISLKKLIRALSTRPAQIFNL-PG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKN- 404
+I+L + + ST PA+IF L P GT+ G ADI + D N T+ A + H N
Sbjct: 354 GRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTL---HSNV 410
Query: 405 --TVFDKEFFTGKVVRTYISGKQVY 427
++ TG V T G+ V
Sbjct: 411 DYNPYEGFEVTGWPVTTLSRGEVVV 435
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 66.4 bits (162), Expect = 1e-11
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 262 ISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKL 321
++ ++L+LN +D+ + S KV PPLR + ++E G DI+ SDH P H +
Sbjct: 228 VTPHHLLLN-DDMPL-GSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAP-HTEEDK 284
Query: 322 LPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPGGTLQTGTAAD 381
F A G IG+ET + L L + + L L + RPA +F + G ++ G AD
Sbjct: 285 QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIKKGKIEEGYDAD 344
Query: 382 IALIDLNYQWTVKADDMSS 400
D + + S
Sbjct: 345 FMAFDFTNIKKINDKRLHS 363
Score = 34.8 bits (80), Expect = 0.040
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 17 DIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYS 76
D I VE+G I + DA N L G + +P D V +
Sbjct: 12 KFDY-LEIEVEDGKIKSIKKDAGN--IGKKEL----KGAI-LPAATDIHVHFRTPGETEK 63
Query: 77 KNITTLSKEAVAGGITSIILMP 98
++ +T + A+ GG T I+ MP
Sbjct: 64 EDFSTGTLSAIFGGTTFIMDMP 85
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 63.9 bits (156), Expect = 7e-11
Identities = 111/493 (22%), Positives = 174/493 (35%), Gaps = 127/493 (25%)
Query: 5 VLNNTRIIDPSR----DIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
V+ ++ + DI G I G L GA ++A TG + +PG
Sbjct: 7 VIRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGAREIDA-----------TGRLVLPG 55
Query: 61 IIDARV---TLTGSPDEYSKNITTLSKEAVAGGITSIILMPL---GMS--SFLDEY---- 108
+D+ +G + + T + A GG T++I G S +++Y
Sbjct: 56 GVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRA 115
Query: 109 ---TFIKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSF----IQSPMS 161
I YA LI PT + + E+ L QG SF +
Sbjct: 116 AGKAVIDYAFH------LIVADPTEEVLTE-------ELPALIAQGYTSFKVFMTYDDLK 162
Query: 162 IHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLA 221
+ D Q +L+ + A A+V + N +IA L
Sbjct: 163 LDDRQ-ILDVLAVARRHGAMVMVHAE----------NHDMIAW---------------LT 196
Query: 222 RDLLIAQHTGGHYHASV----------------------------ISIPQSIALIKHAKA 253
+ LL A T YHA +S ++ I+ A+
Sbjct: 197 KRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARG 256
Query: 254 HNTKA---TCGISINNLILNENDVE---MYNSLRKVLPPLRSETERMSMVEALEKGDIDI 307
K TC L L D++ M + PP R + + ++ L G ++
Sbjct: 257 RGLKIFAETCP---QYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEV 313
Query: 308 IVSDHTP-RHMDT--KLLPFAEASFGSI-----GLETML----SAALRLFHGQQISLKKL 355
SDH P R DT KL A SF +I G+ET L S + +ISL +
Sbjct: 314 FSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVV---KGRISLNRF 370
Query: 356 IRALSTRPAQIFNLP--GGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413
+ ST PA+++ L G + G ADIA+ D + + T+ D+ T ++ T
Sbjct: 371 VALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYTPYEGMRVT 430
Query: 414 GKVVRTYISGKQV 426
G V G+ V
Sbjct: 431 GWPVTVLSRGRVV 443
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 55.6 bits (134), Expect = 2e-08
Identities = 105/437 (24%), Positives = 183/437 (41%), Gaps = 39/437 (8%)
Query: 17 DIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLT----GSP 72
E+ + VE+GII+A N K P + D TG +PG ID L G+
Sbjct: 18 HHQELADVYVEDGIIVAVAP---NLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGT- 73
Query: 73 DEYSKNITTLSKEAVAGGITSII--LMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTA 130
E + + A+AGG T I ++P+ + + K A KS ++ Y
Sbjct: 74 -ETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKA-----EKSCMD-YGFH 126
Query: 131 CLTSNMEGKEISEMRLL-QEQGIVSF-----IQSPMSIHDTQVLLNSMKYAHMLNAIVAL 184
+ + +M L +E+GI SF + + + D ++LL K L A+ +
Sbjct: 127 MAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTD-ELLLEGFKRCKSLGALAMV 185
Query: 185 DTHDH---FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGH-YHASVIS 240
+ F G + +I GI + P + E AR + +A+ Y V+S
Sbjct: 186 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMS 245
Query: 241 IPQSIALIKHAKAHNTKATCGISINNLILNEN---DVEMYNSLRKVL-PPLRSETERMSM 296
I ++ I A+ + ++ L+L+++ D + + + V+ PP+R ++
Sbjct: 246 I-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKAL 304
Query: 297 VEALEKGDIDIIVSDHTPRHMDTKLL---PFAEASFGSIGLETMLSAAL-RLFHGQQISL 352
AL G + ++ +DH P + K F + G G+E + + QIS
Sbjct: 305 QAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISP 364
Query: 353 KKLIRALSTRPAQIFNL--PGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKE 410
+R ST A+IFN+ G + G+ ADI +++ N +T+ A S V++
Sbjct: 365 TDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVYEGR 424
Query: 411 FFTGKVVRTYISGKQVY 427
GKV T G+ V+
Sbjct: 425 RGKGKVEVTISQGRVVW 441
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 52.8 bits (127), Expect = 2e-07
Identities = 85/418 (20%), Positives = 146/418 (34%), Gaps = 116/418 (27%)
Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63
++ N IIDP+R+I+E+ + + N II DA + I G + PG+ID
Sbjct: 5 ILITNGHIIDPARNINEINNLRIINDII----VDADKYPVASETRIIHADGCIVTPGLID 60
Query: 64 --ARVTLTGS-----PDEYS--KNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYA 114
A V G+ PD Y +TT V G + +
Sbjct: 61 YHAHVFYDGTEGGVRPDMYMPPNGVTT----VVDAGSAGTANFDAFYRTVI--------C 108
Query: 115 LEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKY 174
++R+K+ + V P + +E + + E I + +
Sbjct: 109 ASKVRIKAFLTVSPPG--QTWSGYQENYDPDNIDENKIHALFR----------------- 149
Query: 175 AHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDL--LIAQHTGG 232
+ G + + IA Y G+ ++ET+ +A DL +A H+
Sbjct: 150 ----------QYRNVLQGLKLRVQTEDIAEY----GLKPLTETLRIANDLRCPVAVHSTH 195
Query: 233 HY--HASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSE 290
++S+ + +I HA H +T L E VL +R
Sbjct: 196 PVLPMKELVSLLRRGDIIAHA-FHGKGSTI--------LTEEG--------AVLAEVRQA 238
Query: 291 TERMSMVE---------------ALEKGDI-DIIVSDHTPRHMDT---KLLPFAEASFGS 331
ER + + A+ G + DII SD + LP+ + + +
Sbjct: 239 RERGVIFDAANGRSHFDMNVARRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYLA 298
Query: 332 IGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDL 387
+G+ +L+ +I A + PA + + GTL G ADIA+ L
Sbjct: 299 LGM----------------ALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKL 340
>gnl|CDD|181633 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 48.5 bits (116), Expect = 3e-06
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63
V+ N R++DP +D V + ++ G I A G A+ I D TGLV PG ID
Sbjct: 22 VIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD----RTI-DATGLVVAPGFID 75
>gnl|CDD|181711 PRK09228, PRK09228, guanine deaminase; Provisional.
Length = 433
Score = 46.3 bits (111), Expect = 1e-05
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 19 DEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARV 66
E G ++VE+G I+AAG L A+ P A + D G + +PG ID +
Sbjct: 29 IEDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHI 77
>gnl|CDD|181795 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 44.0 bits (105), Expect = 8e-05
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 1 MTSFVLNNTRIIDPSRD------IDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTG 54
M + N ++ I E GAI +E+G I+ G +A + +A + D G
Sbjct: 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEA-DLPAAYAAEVIDAGG 60
Query: 55 LVAVPGIIDA 64
+ PG+ID
Sbjct: 61 KLVTPGLIDC 70
>gnl|CDD|185343 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 42.9 bits (102), Expect = 2e-04
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
M +L+N R++ P +D G++++E+G I A A D G +PG
Sbjct: 1 MMEMILSNARLVLPDEVVD--GSLLIEDGRIAAIDPGASAL-----PGAIDAEGDYLLPG 53
Query: 61 IID 63
++D
Sbjct: 54 LVD 56
Score = 38.6 bits (91), Expect = 0.003
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 294 MSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLK 353
+S ++ G +DI+ SD+ P AS +L AA RL + L
Sbjct: 288 VSALDLAAAGLLDILSSDYYP------------AS--------LLDAAFRLADDGGLDLP 327
Query: 354 KLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDL 387
+ + ++ PA+ L G + G AD+ +
Sbjct: 328 QAVALVTANPARAAGLDDRGEIAPGKRADLVRVRR 362
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently
degraded. In some bacteria, the guanine deaminase gene
is found near the xdhABC genes for xanthine
dehydrogenase. Non-homologous forms of guanine
deaminase also exist, as well as distantly related
forms outside the scope of this model.
Length = 401
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 18 IDEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARV 66
E G ++VENG I+A G L P I D G + +PG ID +
Sbjct: 3 YFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHI 52
>gnl|CDD|181717 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 38.3 bits (90), Expect = 0.004
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63
+L R+IDP+ ID V I +E+G I AA A ++ + + D +GL PG ID
Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKI-AAVAGDIDG--SQAKKVIDLSGLYVSPGWID 57
Score = 36.0 bits (84), Expect = 0.019
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDL 387
+ L+++I A++ A LP G LQ G+ AD+ L L
Sbjct: 296 MPLEEVIAAVTKNAADALRLPELGRLQVGSDADLTLFTL 334
>gnl|CDD|180880 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 37.6 bits (88), Expect = 0.006
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 4 FVLNNTRII--DPSRDIDEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPG 60
++ N I DP++ + E GAI +E +I+ G D L AK+P + I D G + +PG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFI-DAKGKLIMPG 60
Query: 61 IIDA 64
+I++
Sbjct: 61 LINS 64
>gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA.
Members of this protein family are found exclusively in
genomes that contain putative set of labile
selenium-dependent enzyme accessory proteins as well as
homologs of a labile selenium-dependent purine
hydroxylase. A mutant in this gene in Escherichia coli
had improved stationary phase viability. The function
is unknown.
Length = 441
Score = 37.5 bits (87), Expect = 0.007
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 4 FVLNNTRII--DPSRDIDEVGAIIVENGIILAAGADA-LNAKFPTSALIHDCTGLVAVPG 60
++ N + DP+R I E G I ++ +I A G L K+P + I D G + +PG
Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFI-DAKGKLIMPG 59
Query: 61 IIDA 64
I+
Sbjct: 60 FINT 63
>gnl|CDD|183849 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 34.2 bits (79), Expect = 0.062
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 5/29 (17%)
Query: 277 YNSLRKVLPPLRSETERMSMVEALEKGDI 305
+ +KVLPPL S+TER EA+E GD+
Sbjct: 31 FKFFKKVLPPL-SDTER----EAMEAGDV 54
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 34.0 bits (79), Expect = 0.077
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 24 IIVENGIILAAGAD-ALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITT- 81
I++ G I+A + + P +I D +G + VPG ID V + G E + T
Sbjct: 21 ILIAGGKIIAIADNINIPDIVPDIEVI-DASGKILVPGFIDQHVHIIGGGGEGGFSTRTP 79
Query: 82 ---LSKEAVAGGITSII 95
LS + GIT+++
Sbjct: 80 EVQLS-DLTEAGITTVV 95
Score = 30.9 bits (71), Expect = 0.67
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 333 GLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALID 386
+E++L L + + L+ ++ L++ A+ L G G + G AD+ ++D
Sbjct: 306 SVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLVLD 360
>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed.
Length = 569
Score = 33.1 bits (76), Expect = 0.13
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGA----DALNAKFP-----TSALIHDCTG 54
FVL N +IDP I G I + +G I+ G D ++ P + G
Sbjct: 70 FVLCNVTVIDPVLGI-VKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEG 128
Query: 55 LVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSII 95
L+A PG ID V S L A+A GIT+++
Sbjct: 129 LIATPGAIDVHVHFD-SAQ--------LVDHALASGITTML 160
>gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915.
Members of this family of relatively uncommon proteins
are found in both Gram-positive (e.g. Enterococcus
faecalis) and Gram-negative (e.g. Aeromonas hydrophila)
bacteria, as part of a cluster of conserved proteins.
These proteins resemble aminohydrolases (see pfam01979),
including dihydroorotases. The function is unknown.
Length = 365
Score = 33.1 bits (76), Expect = 0.13
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 334 LETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDL 387
L T++S L L + SL+++I ++ A+I L G LQ G AD+ + +
Sbjct: 281 LATVMSKFLALGY----SLEEVIEKVTKNAAEILKLTQKGRLQEGYDADLTIFTV 331
>gnl|CDD|181287 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase;
Reviewed.
Length = 451
Score = 32.9 bits (76), Expect = 0.17
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 1 MTSFVLNNTRII--DPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAV 58
T ++ N I+ D +R G ++VE G I+ G A + + D G V
Sbjct: 1 TTLWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGG--ALPQPADEVFDARGHVVT 58
Query: 59 PGII 62
PG++
Sbjct: 59 PGLV 62
>gnl|CDD|183843 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional.
Length = 596
Score = 33.0 bits (76), Expect = 0.17
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 10 RIIDPSRDIDEVGAIIVEN-GIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67
RI DP+ DIDE +++ G + G A+ +N + P +AL+ G+ ++P I D R +
Sbjct: 437 RIDDPALDIDEHCILVIRGAGPVGYPGSAEVVNMQPP-AALLK--RGIRSLPCIGDGRQS 493
Query: 68 LTGSPDEYSKNITTLSKEAVAGG 90
T S +I S EA GG
Sbjct: 494 GTS----GSPSILNASPEAAVGG 512
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises
non-enzymatically over time as a form of protein
damage. In this isomerization, the connectivity of the
polypeptide changes to pass through the beta-carboxyl
of the side chain. Much but not all of this damage can
be repaired by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two
such enzymes in E. coli, an enzyme that degrades
isoaspartyl dipeptides and may unblock degradation of
proteins that cannot be repaired. This model also
describes closely related proteins from other species
(e.g. Clostridium perfringens, Thermoanaerobacter
tengcongensis) that we assume to be equivalent in
function. This family shows homology to
dihydroorotases.
Length = 389
Score = 32.4 bits (74), Expect = 0.20
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64
+L + P I + +I + II A F + ++ G++AVPG ID
Sbjct: 3 LLKGAEVYAPE-YIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQ 61
Query: 65 RVTLTGSPDEYSKNITT----LSKEAVAGGITSII 95
V + G E T LS + GG+T+++
Sbjct: 62 HVHIIGGGGEGGPTTRTPELTLS-DITKGGVTTVV 95
>gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this
model includes an experimentally characterized adenine
deaminase of Bacillus subtilis. It also include a
member from Methanobacterium thermoautotrophicum, in
which adenine deaminase activity has been detected.
Length = 552
Score = 32.4 bits (74), Expect = 0.21
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63
V+ N +IID G I + NG I AG N + D G AVPG ID
Sbjct: 2 IVIKNAKIIDVYNGEIIPGDIAIANGHI--AGVGKYNG-----VKVIDALGEYAVPGFID 54
Query: 64 ARVTLTGS---PDEYSKNITTLSKEAVAGGITSIILMP 98
A + + S P E++K + + G+T+++ P
Sbjct: 55 AHIHIESSMLTPSEFAKLV-------LPHGVTTVVSDP 85
>gnl|CDD|177721 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 32.0 bits (73), Expect = 0.32
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 135 NMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKY---AHMLNAIVA-LDTHDHF 190
N+ KE+S+M ++ + IVS +QS LN ++Y H++ A L+ H
Sbjct: 374 NISIKELSDMTAIKAEDIVSTLQS----------LNLIQYRKGQHVICADPKVLEEHLKA 423
Query: 191 LGSRGV 196
G G+
Sbjct: 424 AGRGGL 429
>gnl|CDD|162260 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes
the third step in histidine degradation.
Length = 377
Score = 31.6 bits (72), Expect = 0.38
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 20 EVGAIIVENGIILAAGADALNAKFPTSAL-IHDCTGLVAVPGIID 63
E I++ G I+ G L A A I DC G + PG++D
Sbjct: 2 EDAVILIHGGKIVWIGQ--LAALPGEEATEIIDCGGGLVTPGLVD 44
>gnl|CDD|183496 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 31.6 bits (72), Expect = 0.41
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 364 AQIFNLPG-GTLQTGTAADIALIDLN 388
A++ L GTL G AAD+A+ DL+
Sbjct: 369 ARVLGLDAIGTLAVGQAADLAIYDLD 394
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs.
Length = 376
Score = 31.2 bits (71), Expect = 0.60
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 289 SETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQ 348
S + +S E +G +D++ SD+ P AS L AA +L
Sbjct: 278 SHSGNLSARELAHEGLLDVLASDYVP------------ASL--------LLAAFQLADDV 317
Query: 349 Q-ISLKKLIRALSTRPAQIFNL-PGGTLQTGTAADIALID 386
+ I L + ++ ++ PA+ L G++ G AD+ +
Sbjct: 318 EGIPLPQAVKMVTKNPARAVGLSDRGSIAPGKRADLVRVH 357
>gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional.
Length = 408
Score = 31.1 bits (71), Expect = 0.61
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 353 KKLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFF 412
K L+ + + A+ L G ++ G AD+++ +L + + +
Sbjct: 342 KILLLSATRYGAKALGLNNGEIKEGKDADLSVFEL--------PEECTKKEQLPLQFILH 393
Query: 413 TGKVVRTYISGKQV 426
+V + +I GK+V
Sbjct: 394 AKEVKKLFIGGKEV 407
>gnl|CDD|183875 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 30.9 bits (71), Expect = 0.66
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 284 LPPLRSETERMSMVEALEKGDIDIIVSDHTP----RHMD-------TKLLPFAEA 327
LPPLR+ +S L G +++ D+ RH++ KL FAE
Sbjct: 179 LPPLRALLSSLSAKRRL--GHVELAQGDNGTALVLRHLEPLSEADRAKLRAFAEQ 231
>gnl|CDD|150655 pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249).
Members of this family of hypothetical bacterial
proteins have no known function.
Length = 69
Score = 30.6 bits (70), Expect = 0.89
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 280 LRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFG 330
+R++ P R +ALE G+ +V+DH P LL EA F
Sbjct: 3 VREIPPRERHAA-IFGAFDALEPGESLELVNDHDPLP----LLYQLEARFP 48
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 29.9 bits (68), Expect = 1.5
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
MT + N R + I++ +G I A G AL A P A + D G +A+PG
Sbjct: 1 MTDLLFRNVRPAGGAA-----VDILIRDGRIAAIGP-ALAA--PPGAEVEDGGGALALPG 52
Query: 61 IIDARV----TLTGSP 72
++D + T G P
Sbjct: 53 LVDGHIHLDKTFWGDP 68
>gnl|CDD|161975 TIGR00643, recG, ATP-dependent DNA helicase RecG.
Length = 630
Score = 29.6 bits (67), Expect = 1.5
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 277 YNSLRKVLPPLRSETE----------RMSMVEALEKGDIDIIVSDH 312
YNSLR +L PL E R ++E + G I ++V H
Sbjct: 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346
>gnl|CDD|182836 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.
Length = 681
Score = 29.3 bits (67), Expect = 1.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 277 YNSLRKVLPPLR----------SETERMSMVEALEKGDIDIIV 309
Y +L+K+L PL ER ++EA+ G+ DI++
Sbjct: 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369
>gnl|CDD|117068 pfam08491, SE, Squalene epoxidase. This domain is found in
squalene epoxidase (SE) and related proteins which are
found in taxonomically diverse groups of eukaryotes and
also in bacteria. SE was first cloned from Saccharomyces
cerevisiae where it was named ERG1. It contains a
putative FAD binding site and is a key enzyme in the
sterol biosynthetic pathway. Putative transmembrane
regions are found to the protein's C-terminus.
Length = 276
Score = 29.2 bits (66), Expect = 2.0
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 235 HASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERM 294
H VI S L+ + T+ C L N E+ L+ + P + R
Sbjct: 45 HGHVILGKPSPILLYQISSTETRILCDYPGPKLPSIANG-ELKEYLKTSVAPQIPKELRP 103
Query: 295 SMVEALEKGDIDIIVSDHTPRHMDTKLLP 323
S + AL++G I R M LP
Sbjct: 104 SFLAALDEGKI---------RSMPNSFLP 123
>gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional.
Length = 588
Score = 29.0 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 22 GAIIVENGIILAAGADALNAKFPTSAL-IHDCTGLVAVPGIIDARVTLTGS---PDEYSK 77
G I+++ I GA+ + AL D G AVPG IDA + + S P +
Sbjct: 50 GPIVIKGRYIAGVGAEYAD----APALQRIDARGATAVPGFIDAHLHIESSMMTPVTFET 105
Query: 78 NITTLSKEAVAGGITSIILMP 98
TL + G+T++I P
Sbjct: 106 --ATLPR-----GLTTVICDP 119
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 28.0 bits (63), Expect = 4.2
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 12/69 (17%)
Query: 1 MTSFVLNNTRII--DPSR-DIDEVGAIIVENGIILAAGA--DALNAKFPTSALIHDCTGL 55
M ++ ++ DP+ D+ G I++E I A +A +A+ + D G+
Sbjct: 1 MKRTLIRGGTVLTMDPAIGDLPR-GDILIEGDRIAAVAPSIEAPDAE------VVDARGM 53
Query: 56 VAVPGIIDA 64
+ +PG++D
Sbjct: 54 IVMPGLVDT 62
>gnl|CDD|181060 PRK07630, PRK07630, CobD/CbiB family protein; Provisional.
Length = 312
Score = 27.7 bits (62), Expect = 5.7
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 27 ENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSP 72
+GI+LAAGA AL + +A P +DA P
Sbjct: 236 NDGILLAAGAGALGVRLGGP---------LAEPSSVDALAVGDRPP 272
>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
Length = 426
Score = 27.7 bits (62), Expect = 5.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 331 SIGLETMLSAALRLFHGQQIS----LKKLIRALSTRPAQIFNLPGGTLQTGTAADIALID 386
S+G ML A H Q++ ++ A++ PA+I L G L+ G AD+ L+
Sbjct: 317 SLGSGDMLEVAHMGLHVAQMTGQDAMRACFDAVTVNPARIMGLEGYGLEPGCNADLVLLQ 376
>gnl|CDD|152687 pfam12252, SidE, Dot/Icm substrate protein. This family of
proteins is found in bacteria. Proteins in this family
are typically between 397 and 1543 amino acids in
length. This family is the SidE protein in the Dot/Icm
pathway of Legionella pneumophila bacteria. There is
little literature describing the family.
Length = 1443
Score = 27.5 bits (61), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 135 NMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMK 173
NM+ EI+ R++Q+ + +P IHD VL+N K
Sbjct: 599 NMD--EIAAARIIQQ-----ILANPDCIHDDHVLINGQK 630
>gnl|CDD|131387 TIGR02334, prpF, probable AcnD-accessory protein PrpF. The
2-methylcitrate cycle is one of at least five
degradation pathways for propionate via propionyl-CoA.
Degradation of propionate toward pyruvate consumes
oxaloacetate and releases succinate. Oxidation of
succinate back into oxaloacetate by the TCA cycle makes
the 2-methylcitrate pathway a cycle. This family
consists of PrpF, an incompletely characterized protein
that appears to be an essential accessory protein for
the Fe/S-dependent 2-methylisocitrate dehydratase AcnD
(TIGR02333). This protein is related to but distinct
from FldA (part of Pfam family pfam04303), a putative
fluorene degradation protein of Sphingomonas sp. LB126.
Length = 390
Score = 27.1 bits (60), Expect = 8.6
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMS 399
R A F P GTL+ G A N QWTV MS
Sbjct: 338 ERSAVRFGHPSGTLRVGAEASQV----NGQWTVTKAIMS 372
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.134 0.376
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,985,071
Number of extensions: 460471
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 80
Length of query: 431
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 335
Effective length of database: 3,920,105
Effective search space: 1313235175
Effective search space used: 1313235175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)