Query gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 127 out of 1912
Neff 6.5
Searched_HMMs 23785
Date Mon May 30 07:51:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780302.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1k_A Ephrin type-A receptor 40.9 14 0.00058 16.2 2.4 27 105-131 3-29 (38)
2 1bt3_A Protein (catechol oxida 12.9 63 0.0027 12.7 2.2 15 182-196 268-282 (345)
3 3o7q_A L-fucose-proton symport 10.4 78 0.0033 12.2 2.3 27 9-35 61-87 (438)
4 2p3x_A Polyphenol oxidase, chl 8.8 90 0.0038 11.9 1.7 15 182-196 266-280 (339)
5 2j5d_A BNIP3 TM, BCL2/adenovir 8.5 73 0.0031 12.4 0.4 20 67-86 11-30 (45)
6 2zy9_A Mg2+ transporter MGTE; 7.0 1.1E+02 0.0046 11.4 1.2 12 23-34 316-327 (473)
7 3aa0_B F-actin-capping protein 6.9 51 0.0022 13.2 -1.0 17 186-202 208-224 (244)
8 3dfz_A SIRC, precorrin-2 dehyd 6.1 1E+02 0.0044 11.5 0.2 38 38-75 30-67 (223)
9 3lk4_B F-actin-capping protein 5.9 63 0.0027 12.7 -1.0 16 187-202 209-224 (277)
10 3i6x_A P195, RAS GTPase-activa 4.9 1.5E+02 0.0062 10.7 0.7 12 185-196 112-123 (193)
No 1
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=40.93 E-value=14 Score=16.24 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.4
Q ss_pred CHHHCCCCHHHHHHHHHHHHHHCHHHH
Q ss_conf 102078762468989999984111000
Q gi|254780302|r 105 PVWLKFKGGKGISTYIGVLIALELKMA 131 (205)
Q Consensus 105 pi~l~FkGGKGvAt~~G~ll~l~p~~~ 131 (205)
|++.+..||.=||.-+|.+++.....+
T Consensus 3 pv~rgltggeivavifglll~~alllg 29 (38)
T 2k1k_A 3 PVSRGLTGGEIVAVIFGLLLGAALLLG 29 (38)
T ss_dssp SSSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEHHHHHHHHHHHHHHHH
T ss_conf 755677676308999999999999998
No 2
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A {Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A 1bug_A*
Probab=12.95 E-value=63 Score=12.69 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999997999999976
Q gi|254780302|r 182 TVYWKHIENIKRLIL 196 (205)
Q Consensus 182 li~~~Hr~NIkRL~~ 196 (205)
=|+|-|+.||-||..
T Consensus 268 PIF~lHHanIDRlW~ 282 (345)
T 1bt3_A 268 IAFYCHHSNVDRMWT 282 (345)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 489998887999999
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.36 E-value=78 Score=12.22 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999998713779999999
Q gi|254780302|r 9 HELIAPIISLILSYAIGSIPFGLLLTR 35 (205)
Q Consensus 9 ~~m~~~il~~~~~Yl~Gsip~~~~i~k 35 (205)
.+.--..-...++|.+|++|.+++.-|
T Consensus 61 ~~~gli~s~~~~g~~i~~~~~G~l~Dr 87 (438)
T 3o7q_A 61 FQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999998
No 4
>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera}
Probab=8.78 E-value=90 Score=11.88 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999997999999976
Q gi|254780302|r 182 TVYWKHIENIKRLIL 196 (205)
Q Consensus 182 li~~~Hr~NIkRL~~ 196 (205)
-++|-|+.||-||..
T Consensus 266 PiF~lHHanIDRlw~ 280 (339)
T 2p3x_A 266 PIFFGHHANVDRMWN 280 (339)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 889888885999999
No 5
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=8.53 E-value=73 Score=12.36 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 54450332234553345413
Q gi|254780302|r 67 TLSLDAIKATATIIIVSELF 86 (205)
Q Consensus 67 v~l~D~~Kg~l~v~l~~~~~ 86 (205)
+|-.|++|.++|-++...++
T Consensus 11 ifSaefLkvfiPSl~~sh~l 30 (45)
T 2j5d_A 11 IFSAEFLKVFLPSLLLSHLL 30 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 15699999998999999999
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=7.01 E-value=1.1e+02 Score=11.43 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 871377999999
Q gi|254780302|r 23 AIGSIPFGLLLT 34 (205)
Q Consensus 23 l~Gsip~~~~i~ 34 (205)
+++++..+..++
T Consensus 316 l~~~~~aa~vi~ 327 (473)
T 2zy9_A 316 ILTGMVTSSILQ 327 (473)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 7
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=6.95 E-value=51 Score=13.17 Aligned_cols=17 Identities=53% Similarity=0.694 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 97999999976988644
Q gi|254780302|r 186 KHIENIKRLILGSEKKI 202 (205)
Q Consensus 186 ~Hr~NIkRL~~G~E~ki 202 (205)
-|-.||-|++...|+|+
T Consensus 208 ~Hi~NiG~mIEdmE~~~ 224 (244)
T 3aa0_B 208 PHIANIGRLVEDMENKI 224 (244)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 39999999999999999
No 8
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=6.05 E-value=1e+02 Score=11.52 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 59981147898878999999769201024544503322
Q gi|254780302|r 38 GFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKA 75 (205)
Q Consensus 38 ~~~Dir~~GsgN~GatN~~r~~G~~~gi~v~l~D~~Kg 75 (205)
.++.+-=+|.|+++..-+-..+-..+-+.+..-++-+.
T Consensus 30 ~~k~VLVVGgG~vA~rKi~~Ll~~ga~VtVisp~~~~e 67 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE 67 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 99859998988999999999974899799993889989
No 9
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3lk3_B 1izn_B
Probab=5.91 E-value=63 Score=12.69 Aligned_cols=16 Identities=56% Similarity=0.750 Sum_probs=7.3
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 7999999976988644
Q gi|254780302|r 187 HIENIKRLILGSEKKI 202 (205)
Q Consensus 187 Hr~NIkRL~~G~E~ki 202 (205)
|-.||-|++...|+|+
T Consensus 209 Hi~NiG~mIEdmE~~~ 224 (277)
T 3lk4_B 209 HIANIGRLVEDMENKI 224 (277)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 10
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=4.90 E-value=1.5e+02 Score=10.73 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHC
Q ss_conf 997999999976
Q gi|254780302|r 185 WKHIENIKRLIL 196 (205)
Q Consensus 185 ~~Hr~NIkRL~~ 196 (205)
|+|++||...++
T Consensus 112 F~~~eNI~~FL~ 123 (193)
T 3i6x_A 112 FRHTDNVIQWLN 123 (193)
T ss_dssp GGGHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 089999999999
Done!