RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate
acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)



>gnl|CDD|145683 pfam02660, DUF205, Domain of unknown function (DUF205).  This
           family consists of hypothetical transmembrane proteins
           none of which have any known function, the aligned
           region is around 200 amino acids long.
          Length = 178

 Score =  165 bits (420), Expect = 8e-42
 Identities = 75/178 (42%), Positives = 114/178 (64%), Gaps = 1/178 (0%)

Query: 19  ILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATAT 78
           +L+Y +GSIPFG L+ ++FG  DIR +GSGN GATNVLR   KK     L LD +K    
Sbjct: 1   LLAYLLGSIPFGYLIGKLFGGIDIRKVGSGNPGATNVLRVLGKKAGILVLLLDILKGFLA 60

Query: 79  IIIVSELFDHKIG-ILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAI 137
           +++   L    +   LAG A  LGH FPV+LKFKGGKG++T +GVL+AL   +A++  A+
Sbjct: 61  VLLARLLGLDPLLLALAGLAAVLGHNFPVFLKFKGGKGVATTLGVLLALSPLVALIALAV 120

Query: 138 WMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLI 195
           W+   L+T Y S++SL + L++ +++W+    +   +    + + V ++H ENIKRL+
Sbjct: 121 WLLVLLITRYVSLASLVAALLLPILLWLFGGPLEYLLFALLLALLVIYRHRENIKRLL 178


>gnl|CDD|30692 COG0344, COG0344, Predicted membrane protein [Function unknown].
          Length = 200

 Score =  146 bits (369), Expect = 5e-36
 Identities = 81/194 (41%), Positives = 123/194 (63%), Gaps = 6/194 (3%)

Query: 15  IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
           I+ L+++Y +GSIPFGL+++++FG  D+R IGSGN GATNVLR   KK A A L LD +K
Sbjct: 6   ILLLLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPGATNVLRVLGKKAAAAVLLLDILK 65

Query: 75  ATATIIIVSELFDHK---IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMA 131
            T  +++           +  L G A  LGHIFP++  FKGGKG++T +GVL+AL   +A
Sbjct: 66  GTLAVLLARFGLLGVLPLVLALVGIAAILGHIFPIFFGFKGGKGVATTLGVLLALAPWLA 125

Query: 132 ILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPII---FTFMTITVYWKHI 188
           ++ +A W+  AL+T YSS++SL + ++ A  +      +  P I      + I V ++H 
Sbjct: 126 LIGAATWLLIALLTKYSSLASLVAAILAAPFLANFDLYLIAPQIGFPVALLAILVIYRHR 185

Query: 189 ENIKRLILGSEKKI 202
           +NI+RL+ G+E KI
Sbjct: 186 DNIQRLLNGTESKI 199


>gnl|CDD|35424 KOG0203, KOG0203, KOG0203, Na+/K+ ATPase, alpha subunit [Inorganic
           ion transport and metabolism].
          Length = 1019

 Score = 30.2 bits (68), Expect = 0.36
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 54  NVLRTSNKKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGG 113
           N L T N  +AF   S + ++ T   I+++           G  T +G I  +    + G
Sbjct: 231 NPLETRN--IAFF--STNCVEGTGRGIVIA----------TGDRTVMGRIASLASGLEDG 276

Query: 114 KG-ISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNI 172
           K  I+  I   I +   +AI     +   AL+ GY  + ++   +    II    PE  +
Sbjct: 277 KTPIAKEIEHFIHIITGVAIFLGISFFILALILGYEWLRAVVFLI---GIIVANVPEGLL 333

Query: 173 PIIFTFMTIT 182
             +   +T+T
Sbjct: 334 ATVTVCLTLT 343


>gnl|CDD|33879 COG4122, COG4122, Predicted O-methyltransferase [General function
           prediction only].
          Length = 219

 Score = 26.4 bits (58), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 114 KGISTYIGVLIALELKMAILFSAIWMSSAL 143
           + ++   G    LE+  AI +SA+WM+ AL
Sbjct: 52  RLLARLSGPKRILEIGTAIGYSALWMALAL 81


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0806    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,464,969
Number of extensions: 131807
Number of successful extensions: 687
Number of sequences better than 10.0: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 120
Length of query: 205
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,340,536
Effective search space: 503502176
Effective search space used: 503502176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (24.8 bits)