RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >gnl|CDD|178934 PRK00220, PRK00220, putative glycerol-3-phosphate acyltransferase PlsY; Provisional. Length = 198 Score = 189 bits (482), Expect = 5e-49 Identities = 80/192 (41%), Positives = 121/192 (63%), Gaps = 1/192 (0%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 ++ ++L+Y +GSIPF LL+ ++FG D R GSGN GATNVLR KK A ATL DA+K Sbjct: 6 LLLILLAYLLGSIPFALLVGKLFGLPDPREHGSGNPGATNVLRIGGKKAAIATLLGDALK 65 Query: 75 ATATIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133 T +++ D L A LGHIFPV+ KFKGGKG++T GVL+ + +A++ Sbjct: 66 GTLAVLLAYLFGLDPISLGLIALAAVLGHIFPVFFKFKGGKGVATAAGVLLGIGPLLALI 125 Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193 +A W+ AL+T YSS+++L + LI + +W P+ I +++ + ++H +NI+R Sbjct: 126 LAATWLLVALLTRYSSLAALVAALIAPIYVWWFPPDWQFTIPVALLSVLIIYRHRDNIQR 185 Query: 194 LILGSEKKIFKK 205 L+ G+E KI K Sbjct: 186 LLAGTESKIGWK 197 >gnl|CDD|184657 PRK14396, PRK14396, membrane protein; Provisional. Length = 190 Score = 141 bits (357), Expect = 1e-34 Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 3/187 (1%) Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77 L SY IGSIPF +L ++F +D+RS+GSGNIGATNV R NK ++F L LD K+ Sbjct: 6 LFASYLIGSIPFSWILVKVFYKRDLRSVGSGNIGATNVFRV-NKGISFLVLLLDIFKSAL 64 Query: 78 TIIIVSELFDHK-IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSA 136 I+I+ ++ HK I L GF LGHIFPVW FKGGKGI+ IGV++++ +K+ LF Sbjct: 65 VILILEKMCAHKSILYLTGFTVVLGHIFPVWFLFKGGKGIAPTIGVVLSINIKIFFLFII 124 Query: 137 IWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLIL 196 W ++ YSS+SS+ S +I + I N I + M+I + KH +NI R+I Sbjct: 125 TWAVVFMIFRYSSLSSIIS-IISSCIYCAVTENFNSSIFYIAMSIIILIKHRDNIIRMIN 183 Query: 197 GSEKKIF 203 G+EKK+F Sbjct: 184 GTEKKLF 190 >gnl|CDD|172870 PRK14394, PRK14394, membrane protein; Provisional. Length = 195 Score = 141 bits (356), Expect = 1e-34 Identities = 85/186 (45%), Positives = 116/186 (62%), Gaps = 3/186 (1%) Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77 IL Y IGSIPFG +L+ + G DIR GSGNIGATNV R NKKLA TL LDA+K+ Sbjct: 8 FILCYLIGSIPFGFILSYVGGIGDIRKTGSGNIGATNVFR-KNKKLALLTLLLDALKSFI 66 Query: 78 TIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSA 136 + I + D+ I LA +GH+FPV+L FKGGKG++ +G LI ++ K+AI F Sbjct: 67 CVAIAQKYNIDNTILFLAALFAIIGHMFPVYLFFKGGKGVAPLLGSLIFIDYKVAICFLT 126 Query: 137 IWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLIL 196 W+ L+ Y+S+SS+ STLI + I TY + +IFT + + +H +NI R++ Sbjct: 127 FWIICFLLCKYASLSSIVSTLIALLFIC-TYYTIVQSVIFTITALLIITQHTDNIIRMLN 185 Query: 197 GSEKKI 202 SE KI Sbjct: 186 KSENKI 191 >gnl|CDD|161669 TIGR00023, TIGR00023, acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate. Length = 196 Score = 140 bits (356), Expect = 2e-34 Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 2/192 (1%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 + L++ Y IGSIPF L+ ++ DIR GSGN GATNVLRT K A L D +K Sbjct: 6 VFLLLIGYLIGSIPFAYLVGKILKGIDIREHGSGNPGATNVLRTLGVKAALLVLIFDILK 65 Query: 75 ATATIIIVSELF-DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133 + + L + L A LGHIFP++ KFKGGKG++T G L+ + + ++ Sbjct: 66 GMLAVALSFLLGLFDFLPGLVAIAAVLGHIFPIFFKFKGGKGVATSGGSLLPISPWLFLI 125 Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193 A W+ LVT Y S+SS+ + +++ + + + I T + I V ++H NI+R Sbjct: 126 MLATWLFVTLVTKYVSLSSIVTAIVLPFYVLWFHLP-YLYIPVTLLLIFVIYRHRANIQR 184 Query: 194 LILGSEKKIFKK 205 L+ G+E K+++K Sbjct: 185 LLNGTEPKVWQK 196 >gnl|CDD|172876 PRK14400, PRK14400, membrane protein; Provisional. Length = 201 Score = 132 bits (334), Expect = 6e-32 Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 8/192 (4%) Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77 + Y GSIPFG++L R+ D+R++GSGNIGATNV R KKL L LDA KA Sbjct: 11 VAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIGATNVARAGGKKLGVLVLLLDAAKAIV 70 Query: 78 TIIIVSELFD-----HKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132 I++ L + A F+GH++PVWL FKGGKG++T +G+ + L A+ Sbjct: 71 PILVARRLLAGTPHAELWVVAVALAAFVGHLYPVWLGFKGGKGVATGLGIFLVLAPWAAL 130 Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTIT--VYWKHIEN 190 + + + +T SS+ SL T + + TY P+ + + I ++ +H EN Sbjct: 131 AGAVGYAVAYGLTRISSVGSLTGTALCVAGGFATYG-PRHPVSWAGLAIALLIFVRHREN 189 Query: 191 IKRLILGSEKKI 202 I+RL+ G EK++ Sbjct: 190 IRRLVRGEEKRV 201 >gnl|CDD|184670 PRK14419, PRK14419, membrane protein; Provisional. Length = 199 Score = 130 bits (330), Expect = 2e-31 Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 1/192 (0%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 ++ ++L+Y +GS P G L R D+R IGSG+ GATNVLR K A +D K Sbjct: 5 LLIILLAYLLGSFPSGYLAGRWLKGIDLREIGSGSTGATNVLRNVGKGPALFVFIIDVGK 64 Query: 75 ATATIIIVSELF-DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133 +++ L + +LAG A LGHI+PVWL FKGGK ++T +G+L+AL + + Sbjct: 65 GVLAVLLAYALGLQPWLQVLAGLAALLGHIWPVWLGFKGGKAVATGLGMLLALSWPVGLA 124 Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193 I++ ++ S+SS+ + + + +++++ + + + V W+H NI+R Sbjct: 125 SLGIFLIVLALSRIVSLSSISAAIALPLLMFLLNIPLPYILFSLAAGLLVIWRHRSNIER 184 Query: 194 LILGSEKKIFKK 205 L+ G+E KI +K Sbjct: 185 LLAGTEPKIGQK 196 >gnl|CDD|172869 PRK14393, PRK14393, membrane protein; Provisional. Length = 194 Score = 128 bits (323), Expect = 1e-30 Identities = 72/196 (36%), Positives = 114/196 (58%), Gaps = 5/196 (2%) Query: 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSL 70 + I+ L+ +Y +GSIP GLLL + G DIR+ GSGNIGATNV RT +K+ TL Sbjct: 1 MTNEILLLVGAYLLGSIPTGLLLAKAVGV-DIRNTGSGNIGATNVYRTLGRKVGILTLIG 59 Query: 71 DAIKATATIIIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELK 129 D +K ++I +L + I G A FLGH++ V+L FKGGKG++T +GV + L Sbjct: 60 DCLKGLVPVLIARKLGLPDLWIAAVGLAAFLGHVYTVFLGFKGGKGVATALGVFLGLS-P 118 Query: 130 MAILFS-AIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHI 188 +++L + AI++ Y S+ S+ + + +++ T + + + + V +KH Sbjct: 119 LSVLGALAIFVLLVAKWRYVSLGSITAAAAMPLLVAFTEGSPLLVAMTVVIALIVIFKHR 178 Query: 189 ENIKRLILGSEKKIFK 204 ENI+RL G+E + FK Sbjct: 179 ENIQRLRAGTENR-FK 193 >gnl|CDD|172874 PRK14398, PRK14398, membrane protein; Provisional. Length = 191 Score = 125 bits (315), Expect = 9e-30 Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 I LILSY +GSIPF L++T++ G ++R +GSGNIGATNV RT NK LA L LD++K Sbjct: 4 YIVLILSYILGSIPFSLIITKIKGI-NLREVGSGNIGATNVARTGNKFLAALALFLDSLK 62 Query: 75 ATATIIIVSELFDHKIGIL--AGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132 + I + D+ + + LGH+FP+WLKF GGKG++T +G+LIAL + + + Sbjct: 63 GFIAVYIAQQFCDNNDFYIYVSAILAVLGHMFPIWLKFSGGKGVATTLGILIALNISITL 122 Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIK 192 F +W+ YSS++SL +T A + W + + N+ + + I ++ KH NI Sbjct: 123 AFVFVWLIVFFAFRYSSLASLSAT--SAAVAWSFFFQRNLFLTLLTVAILIFLKHYRNIV 180 Query: 193 RLILGSEKK 201 L+ G E+K Sbjct: 181 NLLQGRERK 189 >gnl|CDD|172873 PRK14397, PRK14397, membrane protein; Provisional. Length = 222 Score = 122 bits (308), Expect = 6e-29 Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 6/194 (3%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 ++ + +Y +GSIPFGL+ R F D R+ GS N+GATNV R K TL D +K Sbjct: 4 LLWIATAYVMGSIPFGLVFARTFCGIDPRTGGSRNVGATNVARLCGTKWGVLTLVCDVLK 63 Query: 75 ATATIIIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133 + + + D + L A LGH++ +L F+GGK ++T IGV I L +L Sbjct: 64 GAVPVAVAMSISDSPVFHSLTALAALLGHLYSCFLGFRGGKAVATTIGVFIPLAFWQLLL 123 Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAM--IIWITYPEVNIPIIFTFMTITVYWKHIENI 191 + + +G+ S+ SL TL+ A+ ++ IT IP+ M + VYW H ENI Sbjct: 124 SGILCLLVIWRSGFVSLGSL--TLVTALPVMLLITGKWKLIPLALVVMAL-VYWSHRENI 180 Query: 192 KRLILGSEKKIFKK 205 RL G EK KK Sbjct: 181 GRLARGEEKPWQKK 194 >gnl|CDD|172879 PRK14403, PRK14403, membrane protein; Provisional. Length = 196 Score = 111 bits (280), Expect = 1e-25 Identities = 64/185 (34%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 19 ILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATAT 78 IL Y IGSIPF L+ + D+R +GSGN+GATN +RT+ + L LDA+K Sbjct: 8 ILGYFIGSIPFSYLIPKWLKGIDVRKVGSGNVGATNAIRTTGPVVGGICLLLDALKGFFP 67 Query: 79 IIIVSELF-DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAI 137 + I + D K+ L AT LGH FP+++KFKGGKG+++ +G++ L ++F+ Sbjct: 68 VFIATTFSGDPKLVSLTAIATVLGHDFPIFMKFKGGKGVASTLGIIFCLSWPTGLVFTLT 127 Query: 138 WMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLILG 197 W+ ++T Y+S+ SL + + A++ ++ + ++ + + +H ENI+RL+ G Sbjct: 128 WLVIVMLTKYASLGSLVALYVSALLGYL-LKGYDTGMLILILAVLSTLRHSENIQRLLNG 186 Query: 198 SEKKI 202 +E+K+ Sbjct: 187 TERKV 191 >gnl|CDD|184661 PRK14405, PRK14405, membrane protein; Provisional. Length = 202 Score = 109 bits (274), Expect = 6e-25 Identities = 76/201 (37%), Positives = 111/201 (55%), Gaps = 9/201 (4%) Query: 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSL 70 +I +++++LSY +GS+ F L+ + DIR GSGN GATN LR K A L L Sbjct: 1 MILLLLAVVLSYLLGSVSFSYLIAKKIKGIDIRQHGSGNAGATNTLRVLGKGPAILVLLL 60 Query: 71 DAIKATATIIIVSELFDHKIGI---LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE 127 D +K A + I L LAG A +GH +P++ F+GGKGI+T IGV+ L Sbjct: 61 DVVKGIAAVWIGRLLTGDGAAWFPALAGLAAIIGHNWPIYFGFRGGKGIATTIGVVATLV 120 Query: 128 LKMAILFSAIWMSSALVTGYSSISSL-FSTLIIAMIIWITYPEVNIPIIFTFMTITV--Y 184 A++ I + S ++T Y S+ SL F TL ++ YP IP I+ + I + + Sbjct: 121 FLPALIAGVIAIISIVITRYVSLGSLLFVTLTPVLLYIFDYP---IPYIWLSLIIAIFAF 177 Query: 185 WKHIENIKRLILGSEKKIFKK 205 W+H NI RL+ G+E K+ KK Sbjct: 178 WRHRTNIVRLLSGTENKLGKK 198 >gnl|CDD|184659 PRK14402, PRK14402, membrane protein; Provisional. Length = 198 Score = 108 bits (272), Expect = 9e-25 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 2/192 (1%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 +++L+L+Y GSIP G + R G DIR +GSGN GATNVLR+ K A D +K Sbjct: 6 VLALLLAYLFGSIPAGAWVARTRGV-DIRKVGSGNSGATNVLRSLGKGPALVVAFFDVLK 64 Query: 75 ATATIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133 +++ L D L A LGH + +L+F+GGKG++T G L+ L+ +A+L Sbjct: 65 GGIAVLLARALGLDGMWAGLVAVAAVLGHNYSPFLRFRGGKGVATSFGTLLFLDPVLALL 124 Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193 + ++ +T + S S+ + ++ + + ++W H ENI+R Sbjct: 125 TFPVGVACMWLTRFVSAGSMIGAVTAGVLALALGRPLWEVATVVLLAALLFWTHRENIRR 184 Query: 194 LILGSEKKIFKK 205 L G+E+++ +K Sbjct: 185 LQAGTERRLGEK 196 >gnl|CDD|172882 PRK14406, PRK14406, membrane protein; Provisional. Length = 199 Score = 107 bits (269), Expect = 2e-24 Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 4/187 (2%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 I ++I+ Y IG+IPF ++ ++ G DIR +GSGN+G TNVLR + LD +K Sbjct: 3 IYAIIIGYFIGAIPFSFIIPKLKGI-DIRKVGSGNVGGTNVLRNAGAGYGALAFFLDIMK 61 Query: 75 ATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILF 134 A ++IV F ++AG GH + ++LKFKGGKG++T GV +A+ ++F Sbjct: 62 AYVAVLIVKN-FGINAMLMAGAMAVFGHCYSIFLKFKGGKGVATTFGVFLAIFPWSGLVF 120 Query: 135 SAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRL 194 IW++ +T Y S++S+ ++A I+ + + +IF +T+ +H ENIKRL Sbjct: 121 FGIWLAIVALTKYVSLASIIG--LLAASIFTFFFGKDYWVIFLALTLFSVLRHKENIKRL 178 Query: 195 ILGSEKK 201 + G+E+K Sbjct: 179 LNGNERK 185 >gnl|CDD|184664 PRK14412, PRK14412, membrane protein; Provisional. Length = 198 Score = 106 bits (267), Expect = 3e-24 Identities = 63/191 (32%), Positives = 105/191 (54%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 ++ I++Y IG I + T+ DIR+ GSGN GATNVLR K A +LD +K Sbjct: 4 VLVAIIAYLIGCINNAYIFTKYTRKIDIRNYGSGNAGATNVLRVLGYKAAAPVFALDVLK 63 Query: 75 ATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILF 134 ++I L ++AG A GH +PV+LKF+GGKGI+T +GV++ + + I+ Sbjct: 64 GVIAVLIGKYLMGTTGAMIAGIAVVCGHNWPVFLKFRGGKGIATSVGVVMTVSPLLGIIA 123 Query: 135 SAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRL 194 AI ++ +T Y S+ S+ ++ ++ I + + + + ++H NIKRL Sbjct: 124 LAIGVAIIALTKYVSLGSITGSVTFVLLNAIFWNSTQLFVFSLILASLAIFQHRSNIKRL 183 Query: 195 ILGSEKKIFKK 205 + G+E K+ +K Sbjct: 184 LAGTESKLGQK 194 >gnl|CDD|172868 PRK14392, PRK14392, membrane protein; Provisional. Length = 207 Score = 102 bits (257), Expect = 5e-23 Identities = 68/187 (36%), Positives = 109/187 (58%), Gaps = 3/187 (1%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 I+ IL+Y IG+IP G+ + ++F DIR GSGNIG TN R L LD +K Sbjct: 4 ILMFILAYLIGAIPSGVWIGKLFYHTDIRQAGSGNIGTTNTYRVLGPVAGTIVLVLDILK 63 Query: 75 AT--ATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132 T A++ I+ + H + +L G A LGH F ++++FKGGK ++T G+L+A + Sbjct: 64 GTLAASLPILFGISHHWLPLLVGLAAVLGHTFSIFIRFKGGKAVATSAGILLAYNPPFFV 123 Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIK 192 + SAIW S L+T S++S+ ++I II + Y + + + +T+ V+++H NIK Sbjct: 124 IASAIWFSLILLTSMVSVASMIGMVLIT-IISLVYHDWLLTTVACGLTVVVFYRHRSNIK 182 Query: 193 RLILGSE 199 R+ G+E Sbjct: 183 RIKAGTE 189 >gnl|CDD|184666 PRK14415, PRK14415, membrane protein; Provisional. Length = 216 Score = 103 bits (257), Expect = 5e-23 Identities = 75/210 (35%), Positives = 117/210 (55%), Gaps = 21/210 (10%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 ++ +I+SY +GSIPFG L++ DIRS GSG GATNVLRT +K A SLD IK Sbjct: 7 LLVVIVSYILGSIPFGYLVSHRGSKIDIRSFGSGRTGATNVLRTMGRKAALLVASLDVIK 66 Query: 75 ATATIIIVSELFDHK---IG----------ILAGFATFLGHIFPVWLKFKGGKGISTYIG 121 + + + + G +LAG A GHI+PV+LKF+GG+G++T+ G Sbjct: 67 GASAVAFAGLVIGTEALAFGTNGMALLFAQVLAGLAAVAGHIWPVFLKFRGGRGVATFFG 126 Query: 122 VLIALELKMAILFSAIWMSSALVTGYSSISSLFS-----TLIIAMIIWITYP-EVNIPII 175 +IAL AI + + A ++G++S+ S+ L++ + + +P E I + Sbjct: 127 GMIALCPVAAIFGGEVLIIGAGLSGFASLGSITGVVGAYALLVPLTLISGFPTEYMIYAV 186 Query: 176 FTFMTITVYWKHIENIKRLILGSEKKIFKK 205 + IT+ H +NIKRL+ G E+K+ +K Sbjct: 187 IGSLLITIM--HRDNIKRLLAGKERKLNEK 214 >gnl|CDD|184669 PRK14418, PRK14418, membrane protein; Provisional. Length = 236 Score = 102 bits (256), Expect = 7e-23 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 33/229 (14%) Query: 10 ELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLS 69 ++ + +L Y IGSI F +++++ F DIR GS N GATN LR K+A + Sbjct: 6 SILINLALFLLGYLIGSINFSIIVSKRFKKDDIREHGSKNAGATNSLRNFGAKIALVVFA 65 Query: 70 LDAIKATATIIIVSELFDHK--------IGILAGFATFLGHIFPVWLKFKGGKGISTYIG 121 LD +K I+IVS + + I G +GHIFP++ KFKGGKG + +G Sbjct: 66 LDVLKTLLAILIVSIVVNFVPAVNAFYVIPQAVGLGVVIGHIFPIYFKFKGGKGAACTVG 125 Query: 122 VLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNI--------- 172 ++I++ + +A++ I++ + S+ SL + + + +WI + Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWIPWMSQGPLGYWTYAVE 185 Query: 173 ---------------PIIFTFMTITVYWKHIENIKRLILGSEKKI-FKK 205 PII+T + V W H ENIKRLI SE+K FKK Sbjct: 186 YTNSFTTLVGYWYVSPIIYTLAALLVLWSHRENIKRLIKKSERKFKFKK 234 >gnl|CDD|172875 PRK14399, PRK14399, membrane protein; Provisional. Length = 258 Score = 96.5 bits (240), Expect = 5e-21 Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 I++ + Y +GSI + +++ + G DIR++GSGN GATN +R KK LDA+K Sbjct: 12 ILASVFGYFLGSISWSIIIVKKVGNIDIRTVGSGNPGATNTVRILGKKWGLVVAFLDALK 71 Query: 75 ATATIIIV-------SELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE 127 T I +ELF + +GH +P++ KFKGGK +S ++G+L + Sbjct: 72 VLFTAIFAILLSMIPNELFSQTSYFIPCIFALIGHCWPIYYKFKGGKAVSCFLGLLFVVN 131 Query: 128 LKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITY 167 I+F +W S ++ S++S+FS I +I+WI Y Sbjct: 132 YLYLIIFLIVWFISVAISRKVSVASIFSAATILLIMWIPY 171 >gnl|CDD|172885 PRK14409, PRK14409, membrane protein; Provisional. Length = 205 Score = 91.8 bits (228), Expect = 1e-19 Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 10/194 (5%) Query: 16 ISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKA 75 I + S+ GSIPFG + F DIR GS NIGATNV R K F L LDA+K Sbjct: 4 IFALFSFISGSIPFGYWIALRFRGIDIRKHGSKNIGATNVGRVIGWKFGFIVLLLDALKG 63 Query: 76 TATIIIVSELFDH---KIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132 + + + +L G LGH+F +L FKGGKG++T +GV + L + Sbjct: 64 AVPVYLSASYIPEGGVPFQLLCGVVAVLGHMFSPFLGFKGGKGVATTLGVFLVLTPIACV 123 Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMI-----IWITYPEVNIPIIFT--FMTITVYW 185 ++ + + S+ S+F++L + ++ I + + EV+ I+ T F++ + Sbjct: 124 GAIVVFFVVYKIFKFVSLGSIFASLTLPLVYAFSSILLLHEEVSYWILGTMVFISFGIIL 183 Query: 186 KHIENIKRLILGSE 199 H ENI+R++ SE Sbjct: 184 THRENIRRILNRSE 197 >gnl|CDD|184662 PRK14410, PRK14410, membrane protein; Provisional. Length = 235 Score = 90.2 bits (224), Expect = 3e-19 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 37/225 (16%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 + L +SY IGSIP ++ ++ DIR+ GSGN G TN R K +D K Sbjct: 5 LAILAVSYLIGSIPTSIIAGKLLKGIDIRNFGSGNAGGTNAFRVLGWKAGLLVTLIDIGK 64 Query: 75 ATATIIIVSELFDHK------------IGILAGFATFLGHIFPVWLKFKGGKGISTYIGV 122 + V F + +LAG + +GH+F V+ FKGGKG+ST G+ Sbjct: 65 GVVAAVSVVAFFRIHPIGAFPDINEVALRLLAGMSAVIGHVFTVFAGFKGGKGVSTAAGM 124 Query: 123 LIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWI--------TYPEVNIPI 174 LI + ++ +++ L + Y S++S+ + + +II I + + I + Sbjct: 125 LIGIAPVSMLIVLGVFLLVVLSSRYVSVASILAAIAFPLIIAIRKYVFELGSGLDYYIRL 184 Query: 175 IFT-----------------FMTITVYWKHIENIKRLILGSEKKI 202 + + + + H NI+RL+ G+E ++ Sbjct: 185 FGESFSFHDSLDYHLLIFGLIVALAIIYTHRANIRRLLSGTENRV 229 >gnl|CDD|172871 PRK14395, PRK14395, membrane protein; Provisional. Length = 195 Score = 88.5 bits (219), Expect = 1e-18 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 2/189 (1%) Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77 I++Y +G+IPF R G D+R GSGNIG TN R KL L DA+K Sbjct: 7 FIIAYLLGAIPFAYWAGRYKGM-DVRKHGSGNIGTTNAFRLLGAKLGVLVLLGDALKGAL 65 Query: 78 TIIIVSELFDHKIGILAGFATFLGHIFPVWLKFK-GGKGISTYIGVLIALELKMAILFSA 136 + F GI+AG GH + + FK GKG+++ G+++ L K+ ++ Sbjct: 66 AAYLGYRFFGPWGGIIAGLLAMAGHSWNPFFGFKPSGKGVASGFGIILVLMPKITVMAIV 125 Query: 137 IWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLIL 196 +++ +T Y S+ S+ + L + +++++ + + V +H NI+R++ Sbjct: 126 LFVLVVFLTRYVSVGSVLAALTVGILVFLFNEPMAYKVFAVIAVSGVVIRHRTNIQRVLK 185 Query: 197 GSEKKIFKK 205 G+E K K Sbjct: 186 GTENKFNLK 194 >gnl|CDD|172883 PRK14407, PRK14407, membrane protein; Provisional. Length = 219 Score = 83.8 bits (207), Expect = 3e-17 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 20/213 (9%) Query: 12 IAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLD 71 IA + L ++Y +GS P G L ++ DIR GS + GATNVLRT K A L +D Sbjct: 5 IAGAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKSTGATNVLRTLGKWPAVVVLLVD 64 Query: 72 AIKATATIIIVS--------------------ELFDHKIGILAGFATFLGHIFPVWLKFK 111 +K I+ + + LAG A LGH VWL F Sbjct: 65 VLKGVGAIVFARWFCQWLSTVPSATPPAALDLQSLEPWAVCLAGLAVLLGHGRSVWLNFT 124 Query: 112 GGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVN 171 GGK ++ +GVL+A+ + + + ++ + ++ S+SS+ + L ++ + Sbjct: 125 GGKSVAAGLGVLLAMSWPVGLGAATVFGVALAISRIVSLSSMLAALTAIALVCGLEQPLP 184 Query: 172 IPIIFTFMTITVYWKHIENIKRLILGSEKKIFK 204 ++ + V +H NI+RL+ G+E ++ K Sbjct: 185 YRLLVIAGGVYVIVRHRANIRRLLAGTEPRLGK 217 >gnl|CDD|184668 PRK14417, PRK14417, membrane protein; Provisional. Length = 232 Score = 79.5 bits (196), Expect = 5e-16 Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 1/113 (0%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 +I + Y +G+IP LL+R DIR GSGN+GA+NV++T+ K+L A D K Sbjct: 6 LIMIPAGYLVGAIPMAYLLSRWRRGIDIRRYGSGNVGASNVIKTAGKRLGLAVFVFDVSK 65 Query: 75 ATATIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126 I++ L + I+ G AT GH +PV+L+F GG+GI+T +GV + + Sbjct: 66 GALMILLAGWLGLELWQQIVVGLATIAGHNWPVFLRFNGGRGIATSLGVALVM 118 >gnl|CDD|184665 PRK14414, PRK14414, membrane protein; Provisional. Length = 210 Score = 78.0 bits (192), Expect = 2e-15 Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 2/176 (1%) Query: 9 HELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATL 68 + LI II+LI +Y IGS P L R+F DIR++GS N+G+ NV L Sbjct: 2 NSLIMVIIALIAAYFIGSTPAPYLAGRIFKGIDIRTVGSKNMGSMNVFYNVGFWPGILVL 61 Query: 69 SLDAIKATATIIIVSELFDHK-IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE 127 ++D K + + + L + I +L GH +PVWLKFKGGKG +T IG+L + Sbjct: 62 AVDIGKGALAMAVANWLGEGLGIQMLCALMAIAGHNYPVWLKFKGGKGGATAIGILAYMM 121 Query: 128 LKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITV 183 + ++ A ++ +T + ++S S + ++ W+ ++ ++F+ + + + Sbjct: 122 PEGIPIYIACFLILMAITRFPTLSYGISFISFILVAWLGQHDM-GKVLFSLLVVMI 176 >gnl|CDD|172889 PRK14413, PRK14413, membrane protein; Provisional. Length = 197 Score = 76.4 bits (188), Expect = 4e-15 Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 8/194 (4%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74 II+ ++S+ +GSIP G +T+ DIR+ GSGNIG+TNV R K++ T +D +K Sbjct: 4 IITSVISFLLGSIPTGYFITKKLCGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLK 63 Query: 75 ATATI---IIVSELFDHKIGI-----LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126 + I +S++ + + A LGH + +LKFKGGKG++T +GV I + Sbjct: 64 GIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFI 123 Query: 127 ELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWK 186 + A++ L T SI S+ + I ++ IT + I I T I + + Sbjct: 124 APIPTLTGLAVYFILGLFTRIVSIRSIAIGITIPIMCIITKLPIQIIISTTIACILMIIR 183 Query: 187 HIENIKRLILGSEK 200 H +N+ RLI EK Sbjct: 184 HKDNLVRLIRNEEK 197 >gnl|CDD|172884 PRK14408, PRK14408, membrane protein; Provisional. Length = 257 Score = 76.2 bits (187), Expect = 5e-15 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 15/170 (8%) Query: 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSL 70 ++ IIS + SY IGS+ ++L+ +F QD+R S N G TN++R KKL TL L Sbjct: 12 ILTLIISPLYSYLIGSLNASIILSLVFKKQDVRLFASKNAGMTNMIRVHGKKLGILTLFL 71 Query: 71 DAIKATATI--------------IIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKG 115 D IK T+ +S F+ I + G T +GH +P++ KF+GGKG Sbjct: 72 DIIKPITTVSLTYIIYKYALDAPFDLSNGFNQAILVYFGGIFTIIGHCYPIFFKFQGGKG 131 Query: 116 ISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWI 165 ++ Y G LI ++ +A++ + L+T Y S+S++ + ++ + Sbjct: 132 VACYGGFLITVDPIVALIGIITLLVILLITKYMSLSAMITATFTCFLVLV 181 >gnl|CDD|184667 PRK14416, PRK14416, membrane protein; Provisional. Length = 200 Score = 70.7 bits (173), Expect = 3e-13 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 14/147 (9%) Query: 24 IGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVS 83 +GSIP L+TR +DIR +G GN+G N R A + +D +K + + Sbjct: 2 LGSIPSAYLVTRRLTGRDIRQMGGGNVGGLNTFREVGTGAGIAVVFIDLVKGALAVSVSY 61 Query: 84 ELF--DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE---------LKMAI 132 L + + IL GFA +GH + VWL FKGGKG+ G ++ L +A+ Sbjct: 62 YLLTQNAQWVILTGFAAVIGHNWSVWLDFKGGKGLGPAFGAMLFLLPVYGLPQQLGILAL 121 Query: 133 LFSAIWMSS---ALVTGYSSISSLFST 156 L + AL TG + S F Sbjct: 122 LVFIPLALTRNIALATGIALFSLPFLV 148 >gnl|CDD|184663 PRK14411, PRK14411, membrane protein; Provisional. Length = 204 Score = 57.1 bits (138), Expect = 3e-09 Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 3/192 (1%) Query: 12 IAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLD 71 +A + ++ Y G+ +++ ++F +D GSGN G N+ KK T D Sbjct: 1 MARFWATLIGYVFGNFLTAMIVGKIFLHKDPTKYGSGNPGTANMGAVFGKKWGILTCIGD 60 Query: 72 AIKATATIIIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKM 130 +K + IV ++ + I AG LGH FP+W FKGGKG++ V + + + Sbjct: 61 LLKTLIALFIVYFIYHGHLNIAYAGLGVVLGHCFPIWNHFKGGKGVAVTAQVAVFYDWRA 120 Query: 131 AILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIEN 190 ++ I + + +I L L+ ++ + E ++F +T+ + +K ++ Sbjct: 121 GLITLLIALVLTAIMQNLTIPPLVFMLLFSIYTFWNNQEAG--LVFLIITLIMIFKFRKD 178 Query: 191 IKRLILGSEKKI 202 I G K++ Sbjct: 179 IVDFFTGHGKRV 190 >gnl|CDD|184660 PRK14404, PRK14404, membrane protein; Provisional. Length = 201 Score = 53.8 bits (130), Expect = 3e-08 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 19 ILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATAT 78 +L + GS+ F + ++ G +D+R + GN GA N+ R + K L LD +K Sbjct: 7 LLQFLSGSLMFSYWIGKIVG-KDLRKVRDGNPGAFNLWRAAGWKYGLLGLFLDFLKGYFP 65 Query: 79 IIIVSEL--FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126 ++ E + + I+A A LGH F +LKFKGGK I+T GV AL Sbjct: 66 LVYFVEKGYINGWVIIIAALAGILGHAFSPFLKFKGGKAIATTFGVWSAL 115 >gnl|CDD|184658 PRK14401, PRK14401, membrane protein; Provisional. Length = 187 Score = 51.7 bits (124), Expect = 1e-07 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77 +L+Y +GS+ G+L +R G +DIR G + R A + D +K A Sbjct: 6 AVLAYLLGSLVAGVLYSRARG-EDIR--ERDLPGGSGTYRQFGPGAALLVAAADILKGVA 62 Query: 78 TIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126 ++ L LAG A GH +PV+ +F+GG GI+ +G + L Sbjct: 63 AALLARWLAPPAT-WLAGAAVVAGHCWPVFFRFRGGGGIAPTLGFFLVL 110 >gnl|CDD|184220 PRK13663, PRK13663, hypothetical protein; Provisional. Length = 493 Score = 29.9 bits (68), Expect = 0.48 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 17/52 (32%) Query: 71 DAIKATATIIIV--------------SELF-DHKIGILAGFATFLGHIFPVW 107 D I+ T +++V S+L+ D K GI AG+A F FPVW Sbjct: 162 DYIETTRPLVVVTAPGPGSGKLATCLSQLYHDQKRGIKAGYAKF--ETFPVW 211 >gnl|CDD|149841 pfam08903, DUF1846, Domain of unknown function (DUF1846). This family of proteins are functionally uncharacterized. Some members of the family are annotated as ATP-dependent peptidases. However, we can find no support for this annotation. Length = 491 Score = 28.8 bits (65), Expect = 1.0 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 17/52 (32%) Query: 71 DAIKATATIIIV--------------SELF-DHKIGILAGFATFLGHIFPVW 107 + I+ T +++V S+L+ +HK GI AG+A F FP+W Sbjct: 161 EYIETTRPLVVVTAPGPGSGKLATCLSQLYHEHKRGIKAGYAKF--ETFPIW 210 >gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional. Length = 339 Score = 27.2 bits (61), Expect = 3.2 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 10/62 (16%) Query: 58 TSNKKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFAT----FL--GHIFPVWLKFK 111 TSN + AF T+S+DA K T I E D I +LA + F+ GHIFP+ K Sbjct: 78 TSNHETAF-TVSIDA-KEATTGISAFER-DMTIKLLADDTSKPSDFVRPGHIFPLIAK-D 133 Query: 112 GG 113 GG Sbjct: 134 GG 135 >gnl|CDD|151521 pfam11076, YbhQ, Putative inner membrane protein YbhQ. This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ. Length = 133 Score = 27.2 bits (60), Expect = 3.3 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 113 GKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNI 172 G+S + I L L + L WMS ALV+ + +L++ ++AM++ + E Sbjct: 10 ATGLSCWQ---IMLHLLVVALLVMGWMSGALVSVGLGLCALYALTVVAMLVLQRHHEPRW 66 Query: 173 PIIFTFM-TITVYW 185 + F+ +T W Sbjct: 67 REVADFLEELTTTW 80 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 26.4 bits (58), Expect = 5.5 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQD 41 I+S + YA G + FG++L M G Q Sbjct: 296 ILSSQMDYA-GGVKFGIMLAEMHGTQQ 321 >gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite. Length = 226 Score = 26.3 bits (58), Expect = 5.6 Identities = 9/27 (33%), Positives = 18/27 (66%) Query: 19 ILSYAIGSIPFGLLLTRMFGFQDIRSI 45 I++++I + P GL+ T FG Q + ++ Sbjct: 16 IIAWSIVTFPHGLVQTSAFGIQALVTL 42 >gnl|CDD|150023 pfam09195, Endonuc-BglII, Restriction endonuclease BglII. Members of this family are predominantly found in prokaryotic restriction endonuclease BglII, and adopt a structure consisting of an alpha/beta core containing a six-stranded beta-sheet surrounded by five alpha-helices, two of which are involved in homodimerization of the endonuclease. They recognize the double-stranded DNA sequence AGATCT and cleave after A-1, resulting in specific double-stranded fragments with terminal 5'-phosphates. Length = 153 Score = 26.1 bits (58), Expect = 6.4 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 2 NNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSG 48 N F Y +L+ L + +I G+++T F I IGSG Sbjct: 85 GNYDFFYRDLLK----FQLFHNSDAIDVGIIITPTKSFAKI--IGSG 125 >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed. Length = 307 Score = 25.5 bits (57), Expect = 9.1 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 17/63 (26%) Query: 45 IGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFATFLGHIF 104 IG+GN+GAT LA L A+K ++ LFD G+ G A + Sbjct: 8 IGAGNVGAT---------LAH----LLALKELGDVV----LFDIVEGVPQGKALDIAEAA 50 Query: 105 PVW 107 PV Sbjct: 51 PVE 53 >gnl|CDD|162521 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. Length = 305 Score = 25.6 bits (56), Expect = 9.3 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 42 IRSIGSGNIGATNVLRTSNKKLA 64 I IG+G +GAT R + K+LA Sbjct: 4 ISVIGAGFVGATTAFRLAEKELA 26 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.328 0.142 0.417 Gapped Lambda K H 0.267 0.0726 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,351,245 Number of extensions: 214277 Number of successful extensions: 834 Number of sequences better than 10.0: 1 Number of HSP's gapped: 768 Number of HSP's successfully gapped: 98 Length of query: 205 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 116 Effective length of database: 4,071,361 Effective search space: 472277876 Effective search space used: 472277876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 55 (25.0 bits)