HHsearch alignment for GI: 254780303 and conserved domain: smart00475
>smart00475 53EXOc 5'-3' exonuclease.
Probab=92.37 E-value=0.15 Score=30.18 Aligned_cols=46 Identities=30% Similarity=0.464 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHH--------CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999986--------58968999999999749999999970999996
Q gi|254780303|r 13 LTDDQKISWLRLIR--------SDNISPATCRDMINYFGSAEQALEMIPELAQR 58 (77)
Q Consensus 13 ls~~erlawLRL~R--------t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~r 58 (77)
T Consensus 169 v~P~q~~d~~aL~GD~sDnIpGV~GIG~KtA~kLL~~ygsle~i~~~~d~i~~k 222 (259)
T smart00475 169 LTPEQIIDYKALMGDSSDNIPGVPGIGEKTAAKLLKEFGSLENILENLDKLKKK 222 (259)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 998998637640464535899999847899999999839999999839854889