Query gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 77
No_of_seqs 102 out of 154
Neff 3.5
Searched_HMMs 33803
Date Wed Jun 1 11:57:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780303.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1x2i_A HEF helicase/nuclease; 93.9 0.053 1.6E-06 32.3 3.3 31 24-54 16-46 (49)
2 >1a76_A Flap endonuclease-1 pr 93.6 0.052 1.5E-06 32.4 2.9 32 27-58 21-52 (65)
3 >1exn_A 5'-exonuclease, 5'-nuc 93.4 0.076 2.2E-06 31.5 3.3 42 13-54 5-54 (80)
4 >2bgw_A XPF endonuclease; hydr 93.2 0.064 1.9E-06 31.9 2.8 34 21-54 13-46 (49)
5 >1rxw_A Flap structure-specifi 93.1 0.089 2.6E-06 31.1 3.3 44 14-57 1-50 (68)
6 >1z00_A DNA excision repair pr 92.9 0.095 2.8E-06 30.9 3.4 33 26-58 23-55 (89)
7 >1z00_B DNA repair endonucleas 92.8 0.14 4E-06 30.0 4.0 40 21-60 17-57 (71)
8 >2a1j_A DNA repair endonucleas 92.6 0.11 3.4E-06 30.5 3.4 36 23-58 5-41 (63)
9 >2izo_A FEN1, flap structure-s 92.5 0.061 1.8E-06 32.0 1.9 32 27-58 21-52 (82)
10 >1ul1_X Flap endonuclease-1; p 91.7 0.13 4E-06 30.1 2.8 47 9-55 10-62 (89)
11 >3c1y_A DNA integrity scanning 91.2 0.2 6E-06 29.0 3.4 37 21-57 11-47 (74)
12 >2nrt_A Uvrabc system protein 91.0 0.17 5E-06 29.5 2.8 35 26-60 16-51 (64)
13 >1b43_A Protein (FEN-1); nucle 90.4 0.085 2.5E-06 31.2 0.8 45 11-55 8-59 (77)
14 >1kft_A UVRC, excinuclease ABC 87.4 0.3 8.9E-06 28.1 1.9 36 26-61 28-64 (78)
15 >1dgs_A DNA ligase; AMP comple 83.0 0.97 2.9E-05 25.2 2.8 34 20-53 79-112 (116)
16 >1pzn_A RAD51, DNA repair and 82.1 0.88 2.6E-05 25.4 2.3 40 22-61 35-76 (95)
17 >1ixr_A Holliday junction DNA 81.8 2.2 6.4E-05 23.2 4.2 36 11-46 61-96 (191)
18 >3c65_A Uvrabc system protein 69.8 1.1 3.2E-05 24.9 0.0 39 24-62 175-213 (226)
19 >1stz_A Heat-inducible transcr 58.1 9.9 0.00029 19.5 3.1 64 1-64 1-71 (105)
20 >2rgh_A Alpha-glycerophosphate 55.2 18 0.00052 18.0 5.3 48 6-53 2-52 (88)
21 >1uaa_A REP helicase, protein 53.3 7.4 0.00022 20.2 1.8 28 14-41 19-48 (167)
22 >2csb_A Topoisomerase V, TOP61 48.6 18 0.00054 18.0 3.2 29 23-51 83-111 (142)
23 >2is6_A DNA helicase II; hydro 48.3 11 0.00033 19.2 2.1 28 14-41 19-48 (143)
24 >2ztd_A Holliday junction ATP- 48.3 23 0.00068 17.4 4.4 33 14-46 1-33 (75)
25 >3da1_A Glycerol-3-phosphate d 39.4 32 0.00094 16.6 4.1 41 19-59 17-61 (87)
26 >1jhf_A LEXA repressor; LEXA S 34.5 38 0.0011 16.2 3.0 47 15-61 8-56 (72)
27 >2o8i_A AGR_C_4230P, hypotheti 26.1 33 0.00097 16.5 1.5 12 15-26 64-75 (80)
28 >1cuk_A RUVA protein; DNA repa 25.2 56 0.0017 15.2 4.5 31 15-45 1-31 (79)
29 >1eto_A FIS, factor for invers 25.0 48 0.0014 15.6 2.2 22 22-43 30-51 (53)
30 >2nq5_A 5-methyltetrahydropter 22.8 50 0.0015 15.5 2.0 45 13-57 69-121 (327)
31 >1wcn_A Transcription elongati 21.8 66 0.0019 14.8 2.6 39 23-61 8-48 (70)
32 >2fmp_A DNA polymerase beta; n 21.0 68 0.002 14.7 3.2 25 16-40 91-116 (119)
33 >2w9m_A Polymerase X; SAXS, DN 20.0 72 0.0021 14.6 2.8 18 22-39 97-114 (118)
No 1
>>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} (A:1-49)
Probab=93.88 E-value=0.053 Score=32.35 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9865896899999999974999999997099
Q gi|254780303|r 24 LIRSDNISPATCRDMINYFGSAEQALEMIPE 54 (77)
Q Consensus 24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~ 54 (77)
|---|+|||.+...|+++|||-++...|-.+
T Consensus 16 L~~I~gVG~~~ak~Ll~~Fgsi~~i~~As~e 46 (49)
T 1x2i_A 16 VEGLPHVSATLARRLLKHFGSVERVFTASVA 46 (49)
T ss_dssp HTTSTTCCHHHHHHHHHHHCSHHHHHHCCHH
T ss_pred HCCCCCCCHHHHHHHHHHCCHHHHHHHCCHH
T ss_conf 8589997899999999970628888626798
No 2
>>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:210-274)
Probab=93.64 E-value=0.052 Score=32.38 Aligned_cols=32 Identities=3% Similarity=-0.062 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 58968999999999749999999970999996
Q gi|254780303|r 27 SDNISPATCRDMINYFGSAEQALEMIPELAQR 58 (77)
Q Consensus 27 t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~r 58 (77)
-++|||.|..+||+.|||-++.++.+.++-..
T Consensus 21 V~GIGpKtA~~li~~~~~le~i~~~l~~~~~~ 52 (65)
T 1a76_A 21 VKGIGFKRAYELVRSGVAKDVLKKEVEYYDEI 52 (65)
T ss_dssp TTTCCHHHHHHHHHHTCHHHHHHHHSTTHHHH
T ss_pred CCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 68562999999999729999999976526899
No 3
>>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} (A:182-261)
Probab=93.36 E-value=0.076 Score=31.47 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHH--------CCCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89999999999986--------5896899999999974999999997099
Q gi|254780303|r 13 LTDDQKISWLRLIR--------SDNISPATCRDMINYFGSAEQALEMIPE 54 (77)
Q Consensus 13 ls~~erlawLRL~R--------t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~ 54 (77)
++.++-++..-|.= -++|||.|...||+.|||-++.++++.+
T Consensus 5 v~p~q~~d~~~L~GD~sD~ipGV~GIG~ktA~~Li~~~gsle~i~~~~~~ 54 (80)
T 1exn_A 5 DDVEQFISLKAIXGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPL 54 (80)
T ss_dssp SSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSC
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 98999999999719831368999976799999999995999999997865
No 4
>>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} (A:149-197)
Probab=93.18 E-value=0.064 Score=31.87 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999865896899999999974999999997099
Q gi|254780303|r 21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIPE 54 (77)
Q Consensus 21 wLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~ 54 (77)
--.|---|+|||.+-..||.+|||-++.-.|-++
T Consensus 13 ~s~L~~IpGIG~k~~~~LL~~FgSi~~i~~As~e 46 (49)
T 2bgw_A 13 LYILQSFPGIGRRTAERILERFGSLERFFTASKA 46 (49)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHH
T ss_conf 8888535689978999999986999999858999
No 5
>>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} (A:221-288)
Probab=93.07 E-value=0.089 Score=31.08 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999865------896899999999974999999997099999
Q gi|254780303|r 14 TDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIPELAQ 57 (77)
Q Consensus 14 s~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~ 57 (77)
|.++-+++.-|.=| ++|||.|-.+||+.|||-+..++++-++..
T Consensus 1 t~~q~~d~~~L~GsD~~pGV~GIG~ktA~~li~~~~sle~i~~~~~~~~~ 50 (68)
T 1rxw_A 1 TREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNID 50 (68)
T ss_dssp CHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC---
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHH
T ss_conf 49999899983397435899995789999999994999999998761427
No 6
>>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (A:)
Probab=92.95 E-value=0.095 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.7
Q ss_pred HCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 658968999999999749999999970999996
Q gi|254780303|r 26 RSDNISPATCRDMINYFGSAEQALEMIPELAQR 58 (77)
Q Consensus 26 Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~r 58 (77)
.-|+|||++...|+.+|||-++.+.|-++=...
T Consensus 23 ~I~gIG~~~a~~L~~~F~s~~~i~~A~~~~L~~ 55 (89)
T 1z00_A 23 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLAL 55 (89)
T ss_dssp TSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCH
T ss_conf 899769999999999909947876654751000
No 7
>>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} (B:1-71)
Probab=92.79 E-value=0.14 Score=30.02 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHC
Q ss_conf 9999865896899999999974999999997099-999614
Q gi|254780303|r 21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIPE-LAQRGA 60 (77)
Q Consensus 21 wLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~-la~rgG 60 (77)
.-.|..-|+|||.+...|+.+|||-++...|-.+ |..-.|
T Consensus 17 ~~~L~~ipGIg~k~~~~Ll~~f~si~~i~~As~eeL~~v~G 57 (71)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG 57 (71)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHCCC
T ss_conf 99998089988999999999907999998789999988759
No 8
>>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} (A:)
Probab=92.62 E-value=0.11 Score=30.46 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=29.3
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHH
Q ss_conf 9986589689999999997499999999709-99996
Q gi|254780303|r 23 RLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQR 58 (77)
Q Consensus 23 RL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP-~la~r 58 (77)
.|..-|+|||.+...|+++|||-++..+|-- +|.+=
T Consensus 5 ~L~~IpgVG~~~a~~Ll~~f~Si~~i~~As~eeL~~i 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHC
T ss_conf 8851999899999999998078999986999999778
No 9
>>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-binding, excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} (A:219-300)
Probab=92.51 E-value=0.061 Score=32.00 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 58968999999999749999999970999996
Q gi|254780303|r 27 SDNISPATCRDMINYFGSAEQALEMIPELAQR 58 (77)
Q Consensus 27 t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~r 58 (77)
-++|||.|..+||+.|||-+.+++++..+...
T Consensus 21 V~GiG~ktA~~li~~~g~le~i~~~~~~~~~~ 52 (82)
T 2izo_A 21 IRGIGPERALKIIKKYGKIEKAMEYGEISKKD 52 (82)
T ss_dssp STTCCHHHHHHHHHHSSCC-------------
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 79944889999999839999999999985565
No 10
>>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} (X:1-14,X:218-292)
Probab=91.69 E-value=0.13 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 4878899999999999865------8968999999999749999999970999
Q gi|254780303|r 9 GGVSLTDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIPEL 55 (77)
Q Consensus 9 ~~~~ls~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l 55 (77)
..+.-+.++-++..=|.=| ++|||.|-.+||+.|||-+.+++.+.++
T Consensus 10 ~~~~~tp~q~id~~~L~GsDy~pGV~GIG~KtA~kLI~~ygsle~ii~~l~~~ 62 (89)
T 1ul1_X 10 ADVAPNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPN 62 (89)
T ss_dssp HTTCTCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCT
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 87585989999999963996535578856999999999809999999999860
No 11
>>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:304-377)
Probab=91.20 E-value=0.2 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999865896899999999974999999997099999
Q gi|254780303|r 21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQ 57 (77)
Q Consensus 21 wLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~ 57 (77)
|--|.--++|||.+...|+.+|||-.+..+|-++-..
T Consensus 11 ~~~L~~I~giG~~~a~~L~~~fgsl~~i~~as~~~L~ 47 (74)
T 3c1y_A 11 YRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLK 47 (74)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHH
T ss_conf 8887339999899999999985389999857998885
No 12
>>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:157-220)
Probab=91.02 E-value=0.17 Score=29.49 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.1
Q ss_pred HCCCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHC
Q ss_conf 65896899999999974999999997099-999614
Q gi|254780303|r 26 RSDNISPATCRDMINYFGSAEQALEMIPE-LAQRGA 60 (77)
Q Consensus 26 Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~-la~rgG 60 (77)
--|+||+.+-..|+++|||.++..+|-++ |.+-.|
T Consensus 16 ~I~gIG~~~a~~L~~~F~s~~~i~~As~eeL~~v~g 51 (64)
T 2nrt_A 16 NVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG 51 (64)
T ss_dssp TSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHCCC
T ss_conf 053107999999999868999997099999986879
No 13
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:212-288)
Probab=90.44 E-value=0.085 Score=31.18 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7889999999999986-------58968999999999749999999970999
Q gi|254780303|r 11 VSLTDDQKISWLRLIR-------SDNISPATCRDMINYFGSAEQALEMIPEL 55 (77)
Q Consensus 11 ~~ls~~erlawLRL~R-------t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l 55 (77)
.-++..+-++..=|.= -++|||.|..+||+.|||-++.++.+.++
T Consensus 8 ~g~~~~q~id~~~L~G~d~ni~GV~GiG~ktA~kli~~~gsle~i~~~~~~~ 59 (77)
T 1b43_A 8 LKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQKQSDV 59 (77)
T ss_dssp HTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGGGCSS
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCC
T ss_conf 2978999999999728665656589624999999999959999975221001
No 14
>>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=87.42 E-value=0.3 Score=28.07 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=28.8
Q ss_pred HCCCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHCC
Q ss_conf 65896899999999974999999997099-9996145
Q gi|254780303|r 26 RSDNISPATCRDMINYFGSAEQALEMIPE-LAQRGAV 61 (77)
Q Consensus 26 Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~-la~rgG~ 61 (77)
--|+||+.+-..|+++|||-++...|-.+ |.+--|.
T Consensus 28 ~I~gIG~~~a~~L~~~Fgs~~~i~~As~eeL~~v~gI 64 (78)
T 1kft_A 28 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGI 64 (78)
T ss_dssp GCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSST
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCC
T ss_conf 6999479999999999099899985789999738998
No 15
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:427-542)
Probab=83.00 E-value=0.97 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999986589689999999997499999999709
Q gi|254780303|r 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIP 53 (77)
Q Consensus 20 awLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP 53 (77)
.||...--++|||.+-..|+++|||-++...|-.
T Consensus 79 ~~l~algI~giG~~~ak~L~~~f~s~~~i~~As~ 112 (116)
T 1dgs_A 79 RLLYALGLPGVGEVLARNLARRFGTMDRLLEASL 112 (116)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCCH
T ss_conf 9999769975456899999876689999972899
No 16
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95)
Probab=82.12 E-value=0.88 Score=25.42 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHHCCCCCHHHHHHHHHH-CCCHHHHHHHHHHH-HHHHCC
Q ss_conf 99986589689999999997-49999999970999-996145
Q gi|254780303|r 22 LRLIRSDNISPATCRDMINY-FGSAEQALEMIPEL-AQRGAV 61 (77)
Q Consensus 22 LRL~Rt~~VGp~Tf~~Ll~~-fGsA~aAL~aLP~l-a~rgG~ 61 (77)
+-|.--|+||+.+...|+++ |+|.++..+|-++= +.=-|.
T Consensus 35 ~~ll~I~gIG~~~a~~L~~~~~~s~e~i~~As~e~L~~i~Gi 76 (95)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGI 76 (95)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCC
T ss_pred CCHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCC
T ss_conf 146437997999999999859971999982899999975498
No 17
>>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} (A:)
Probab=81.82 E-value=2.2 Score=23.20 Aligned_cols=36 Identities=6% Similarity=0.078 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
Q ss_conf 788999999999998658968999999999749999
Q gi|254780303|r 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAE 46 (77)
Q Consensus 11 ~~ls~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~ 46 (77)
...+..||--+..|+--++|||.|-..++++|++.+
T Consensus 61 GF~~~~er~~F~~L~~V~GIGpk~Al~iL~~~~~~e 96 (191)
T 1ixr_A 61 GFPDEENLALFELLLSVSGVGPKVALALLSALPPRL 96 (191)
T ss_dssp EESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH
T ss_conf 108289999999985758847788999985599999
No 18
>>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} (A:)
Probab=69.78 E-value=1.1 Score=24.92 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=32.1
Q ss_pred HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 986589689999999997499999999709999961455
Q gi|254780303|r 24 LIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVY 62 (77)
Q Consensus 24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~rgG~~ 62 (77)
+.--++||+.+-..|+++|||=++-..|-.+-...-|..
T Consensus 175 ~~~I~~IG~~~a~~Ll~~Fgsl~~i~~As~eeL~~vgiG 213 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRANIP 213 (226)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHCHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCC
T ss_conf 889987479999999998589999983999999877999
No 19
>>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} (A:1-105)
Probab=58.09 E-value=9.9 Score=19.47 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=45.4
Q ss_pred CCCCCCCCCC--CCCCHHHH--HHHHHHHHCCCCCHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9622211248--78899999--9999998658968999999999749---999999970999996145588
Q gi|254780303|r 1 MKKMNPLKGG--VSLTDDQK--ISWLRLIRSDNISPATCRDMINYFG---SAEQALEMIPELAQRGAVYAG 64 (77)
Q Consensus 1 m~~~~~~~~~--~~ls~~er--lawLRL~Rt~~VGp~Tf~~Ll~~fG---sA~aAL~aLP~la~rgG~~~~ 64 (77)
|..+++.... ..|++.++ ++||.-.-..+=.|+|...|...|| |...+=..|-.|.++|=..+.
T Consensus 1 M~~~~~~~~~~~~~lt~Rq~~IL~~I~~~~~~~g~~vtv~el~~~~~l~vS~~TvrrdL~~Le~~G~l~r~ 71 (105)
T 1stz_A 1 MRRLNRKNNEALKKLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQP 71 (105)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 96421246525454089999999999999974299567899998728998869999999999878771589
No 20
>>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* (A:428-515)
Probab=55.18 E-value=18 Score=18.04 Aligned_cols=48 Identities=8% Similarity=0.223 Sum_probs=34.8
Q ss_pred CCCCCCC--CCHHHHHHHH-HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 1124878--8999999999-9986589689999999997499999999709
Q gi|254780303|r 6 PLKGGVS--LTDDQKISWL-RLIRSDNISPATCRDMINYFGSAEQALEMIP 53 (77)
Q Consensus 6 ~~~~~~~--ls~~erlawL-RL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP 53 (77)
|+++|-. -+-++.++++ ++++..++.+.+-.+|+.+|||-...+-.+.
T Consensus 2 Pl~GG~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~L~~~YGs~a~~vl~~~ 52 (88)
T 2rgh_A 2 QISGGNFDPTKLEETVTELAKEGVAAGLEEEDATYIADFYGTNARRIFELA 52 (88)
T ss_dssp CCTTCCSCTTCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 667777886779999999997455689999999999997875999999754
No 21
>>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:377-543)
Probab=53.27 E-value=7.4 Score=20.17 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHCC--CCCHHHHHHHHHH
Q ss_conf 999999999998658--9689999999997
Q gi|254780303|r 14 TDDQKISWLRLIRSD--NISPATCRDMINY 41 (77)
Q Consensus 14 s~~erlawLRL~Rt~--~VGp~Tf~~Ll~~ 41 (77)
...+.++|+|++++| +||+.+...+...
T Consensus 19 np~D~~al~ril~~P~~gi~~~~l~~i~~~ 48 (167)
T 1uaa_A 19 NPDDDSAFLRIVNTPKREIGPATLKKLGEW 48 (167)
T ss_dssp CTTCHHHHHHHSSTTCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCHHHCCHHHHHHHHHH
T ss_conf 988669999998360220113567777765
No 22
>>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:181-225,A:375-471)
Probab=48.62 E-value=18 Score=17.97 Aligned_cols=29 Identities=17% Similarity=0.473 Sum_probs=24.3
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99865896899999999974999999997
Q gi|254780303|r 23 RLIRSDNISPATCRDMINYFGSAEQALEM 51 (77)
Q Consensus 23 RL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~a 51 (77)
-|-..++||..|..+|+..||.++.+-..
T Consensus 83 eltkkegvgrktaerllrafgnpervkql 111 (142)
T 2csb_A 83 ELTKKEGVGRKTAERLLRAFGNPERVKQL 111 (142)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 77654064565799999970998999999
No 23
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:382-524)
Probab=48.34 E-value=11 Score=19.17 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHCC--CCCHHHHHHHHHH
Q ss_conf 999999999998658--9689999999997
Q gi|254780303|r 14 TDDQKISWLRLIRSD--NISPATCRDMINY 41 (77)
Q Consensus 14 s~~erlawLRL~Rt~--~VGp~Tf~~Ll~~ 41 (77)
...+.++|+|++++| +||+.+..++...
T Consensus 19 np~D~~al~ril~~P~~gig~~~l~~i~~~ 48 (143)
T 2is6_A 19 NRNDDAAFERVVNTPTRGIGDRTLDVVRQT 48 (143)
T ss_dssp CTTCHHHHHHHTTSSCCSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 988769999998354358999999999998
No 24
>>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A (A:80-154)
Probab=48.28 E-value=23 Score=17.40 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHH
Q ss_conf 999999999998658968999999999749999
Q gi|254780303|r 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAE 46 (77)
Q Consensus 14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~ 46 (77)
..+||--+..|+--.+|||.+-..+|+.|+..+
T Consensus 1 d~~Er~~F~~L~~V~GIGpk~Al~iLs~~~~~e 33 (75)
T 2ztd_A 1 DGETRDLFLTLLSVSGVGPRLAMAALAVHDAPA 33 (75)
T ss_dssp SHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
T ss_conf 899999999985413223666623221577677
No 25
>>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} (A:405-491)
Probab=39.37 E-value=32 Score=16.59 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=31.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH----HHHHHHH
Q ss_conf 9999998658968999999999749999999970----9999961
Q gi|254780303|r 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMI----PELAQRG 59 (77)
Q Consensus 19 lawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aL----P~la~rg 59 (77)
-...+|.+..++-...-.+|+.+|||-...+-++ |++.+.-
T Consensus 17 ~~~~~l~~~~gl~~~~a~~L~~~YGs~a~~vl~~~~~~~~l~~~~ 61 (87)
T 3da1_A 17 DEASRKGAKLGFDADEVRRLAKLYGSNVDHVLNYAYEGKEEAEHY 61 (87)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHGGGHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
T ss_conf 999986555289999999999866557999998762264325578
No 26
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72)
Probab=34.53 E-value=38 Score=16.18 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998658968999999999749--999999970999996145
Q gi|254780303|r 15 DDQKISWLRLIRSDNISPATCRDMINYFG--SAEQALEMIPELAQRGAV 61 (77)
Q Consensus 15 ~~erlawLRL~Rt~~VGp~Tf~~Ll~~fG--sA~aAL~aLP~la~rgG~ 61 (77)
+.+-|++++-....+==|.|.+.+...|| |...+-..|-.|-+.|=.
T Consensus 8 q~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~Le~~G~i 56 (72)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999999999999829897699999982999737899987513422851
No 27
>>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; 2.60A {Agrobacterium tumefaciens str} (A:1-51,A:137-165)
Probab=26.06 E-value=33 Score=16.53 Aligned_cols=12 Identities=50% Similarity=0.941 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999986
Q gi|254780303|r 15 DDQKISWLRLIR 26 (77)
Q Consensus 15 ~~erlawLRL~R 26 (77)
.-|+++||||+-
T Consensus 64 ~~~~~~~~~~~~ 75 (80)
T 2o8i_A 64 QVEKIAWLRLAS 75 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 28
>>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} (A:66-144)
Probab=25.22 E-value=56 Score=15.20 Aligned_cols=31 Identities=10% Similarity=0.349 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
Q ss_conf 9999999999865896899999999974999
Q gi|254780303|r 15 DDQKISWLRLIRSDNISPATCRDMINYFGSA 45 (77)
Q Consensus 15 ~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA 45 (77)
++||--...|+--.+|||.+-..+|..|+.-
T Consensus 1 ~~Er~~F~~L~~V~GIGpk~Al~iLs~~~~~ 31 (79)
T 1cuk_A 1 KQERTLFKELIKTNGVGPKLALAILSGMSAQ 31 (79)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
T ss_conf 8999999987347884899999997579999
No 29
>>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98)
Probab=25.01 E-value=48 Score=15.57 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=17.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9998658968999999999749
Q gi|254780303|r 22 LRLIRSDNISPATCRDMINYFG 43 (77)
Q Consensus 22 LRL~Rt~~VGp~Tf~~Ll~~fG 43 (77)
-+-++.=+|.+.|+++.|..||
T Consensus 30 s~aA~~Lgisr~tL~rklkk~~ 51 (53)
T 1eto_A 30 TRAALMMGINRGTLRKKLKKYG 51 (53)
T ss_dssp HHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999997989999999999858
No 30
>>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} (A:1-66,A:130-390)
Probab=22.80 E-value=50 Score=15.50 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHCC--------CCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8999999999998658--------96899999999974999999997099999
Q gi|254780303|r 13 LTDDQKISWLRLIRSD--------NISPATCRDMINYFGSAEQALEMIPELAQ 57 (77)
Q Consensus 13 ls~~erlawLRL~Rt~--------~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~ 57 (77)
+.-..-+.|++++++. =.||.|+..++..+.+-...++.+-+..+
T Consensus 69 l~~~~~le~~~~ak~~~~~pvk~~l~GP~Tll~~~~~~e~~~~ll~~ia~~~~ 121 (327)
T 2nq5_A 69 LNNNRLLDLYLEAREVVGDKAKPVITGPITYVALSTGVEDFTAAVKSLLPLYK 121 (327)
T ss_dssp CCCCHHHHHHHHHHHHHGGGEEEEEECHHHHHHTCBSCSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 67631599999999844998715715899999770457999999999999999
No 31
>>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B (A:)
Probab=21.78 E-value=66 Score=14.81 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=29.8
Q ss_pred HHHHCCCCCHHHHHHHHHH-CCCHHHHHHHHHH-HHHHHCC
Q ss_conf 9986589689999999997-4999999997099-9996145
Q gi|254780303|r 23 RLIRSDNISPATCRDMINY-FGSAEQALEMIPE-LAQRGAV 61 (77)
Q Consensus 23 RL~Rt~~VGp~Tf~~Ll~~-fGsA~aAL~aLP~-la~rgG~ 61 (77)
-|.--++|||.+..+|... |.|.+..-.+-|+ |+.--|.
T Consensus 8 ~L~~i~Gig~~~a~~L~~aGi~TvedLa~a~~~eL~~i~Gi 48 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGL 48 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSC
T ss_pred HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCHHHHHHHCCC
T ss_conf 99817898999999999969975999987299999765179
No 32
>>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} (A:1-119)
Probab=21.05 E-value=68 Score=14.72 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=15.9
Q ss_pred HHHHHHHHHH-HCCCCCHHHHHHHHH
Q ss_conf 9999999998-658968999999999
Q gi|254780303|r 16 DQKISWLRLI-RSDNISPATCRDMIN 40 (77)
Q Consensus 16 ~erlawLRL~-Rt~~VGp~Tf~~Ll~ 40 (77)
++...-++++ +-.+|||.|-+++.+
T Consensus 91 ~~~~~~~~~l~~i~GvGp~~a~~~~~ 116 (119)
T 2fmp_A 91 DDTSSSINFLTRVSGIGPSAARKFVD 116 (119)
T ss_dssp CHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 38725788988536878899999998
No 33
>>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} (A:1-118)
Probab=20.00 E-value=72 Score=14.59 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=8.8
Q ss_pred HHHHHCCCCCHHHHHHHH
Q ss_conf 999865896899999999
Q gi|254780303|r 22 LRLIRSDNISPATCRDMI 39 (77)
Q Consensus 22 LRL~Rt~~VGp~Tf~~Ll 39 (77)
+-|..-++|||.|..+|.
T Consensus 97 ~~l~~i~GiGp~ta~~l~ 114 (118)
T 2w9m_A 97 LDLLGVRGLGPKKIRSLW 114 (118)
T ss_dssp HHHTTSTTCCHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHH
T ss_conf 998578987899999999
Done!