HHSEARCH alignment of GI: 254780303 and SCOP domain: d1rxwa1

Alignment

Probab=92.49  E-value=0.12  Score=28.10  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             CCHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             899999999999865------89689999999997499999999709
Q gi|254780303|r   13 LTDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIP   53 (77)
Q Consensus        13 ls~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP   53 (77)
                      ||.++-++.+=|.=|      ++|||.|...||+.|||-+..++.+.
T Consensus         1 lt~eq~iD~~~L~GsDn~pGV~GIG~ktA~kli~~~gsle~i~~~~~   47 (105)
T d1rxwa1           1 LTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK   47 (105)
T ss_dssp             CCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             98999999999958878889999378999999999399899999887

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]