RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] (77 letters) >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionine MAD, decamer; HET: KPL; 1.80A {Escherichia coli} (A:) Length = 264 Score = 27.0 bits (59), Expect = 0.98 Identities = 7/39 (17%), Positives = 12/39 (30%) Query: 23 RLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61 + R + + EQA E + + GA Sbjct: 71 AVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGAN 109 >3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} (A:1-264) Length = 264 Score = 26.5 bits (58), Expect = 1.3 Identities = 5/30 (16%), Positives = 12/30 (40%) Query: 40 NYFGSAEQALEMIPELAQRGAVYAGKRAFV 69 N+ G+ E + +I + + + F Sbjct: 15 NHXGNVEHGVALIRAIRESCQGFDFDFGFK 44 >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin- beta family, alternative splicing, cytoplasm, nucleus, phosphoprotein; HET: GTP; 2.92A {Homo sapiens} (A:362-454) Length = 93 Score = 25.0 bits (55), Expect = 3.8 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 12/37 (32%) Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55 ++W L R + +S L +IP+ Sbjct: 12 MTWGALFRHEILSR------------DPLLLAIIPKY 36 >1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus} (A:230-417) Length = 188 Score = 24.0 bits (52), Expect = 6.8 Identities = 5/18 (27%), Positives = 10/18 (55%) Query: 42 FGSAEQALEMIPELAQRG 59 FG + A ++ ++A R Sbjct: 135 FGDFKGAKQLALDIAYRK 152 >1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} (A:1-37,A:151-258) Length = 145 Score = 24.0 bits (52), Expect = 7.9 Identities = 6/43 (13%), Positives = 18/43 (41%) Query: 23 RLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK 65 +LI + +S + +++ + + +I + + A K Sbjct: 47 KLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADK 89 >1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} (A:1-128,A:239-393) Length = 283 Score = 23.7 bits (50), Expect = 8.4 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 38 MINYFGSAEQALEMIPELAQRG 59 MI+ FG+ EQ + P L G Sbjct: 110 MIDSFGNEEQRHKFCPPLCSEG 131 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.130 0.371 Gapped Lambda K H 0.267 0.0545 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 549,617 Number of extensions: 19266 Number of successful extensions: 93 Number of sequences better than 10.0: 1 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 9 Length of query: 77 Length of database: 4,956,049 Length adjustment: 42 Effective length of query: 35 Effective length of database: 3,536,239 Effective search space: 123768365 Effective search space used: 123768365 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.5 bits)