RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)



>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase;
           beta-alpha-barrel, TIM-barrel, ketopantoate,
           selenomethionine MAD, decamer; HET: KPL; 1.80A
           {Escherichia coli} (A:)
          Length = 264

 Score = 27.0 bits (59), Expect = 0.98
 Identities = 7/39 (17%), Positives = 12/39 (30%)

Query: 23  RLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
            + R               + + EQA E    + + GA 
Sbjct: 71  AVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGAN 109


>3g8r_A Probable spore coat polysaccharide biosynthesis protein E;
          structural genomics, protein structure initiative;
          2.49A {Chromobacterium violaceum atcc 12472} (A:1-264)
          Length = 264

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 40 NYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
          N+ G+ E  + +I  + +    +     F 
Sbjct: 15 NHXGNVEHGVALIRAIRESCQGFDFDFGFK 44


>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-
          beta family, alternative splicing, cytoplasm, nucleus,
          phosphoprotein; HET: GTP; 2.92A {Homo sapiens}
          (A:362-454)
          Length = 93

 Score = 25.0 bits (55), Expect = 3.8
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 12/37 (32%)

Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
          ++W  L R + +S                 L +IP+ 
Sbjct: 12 MTWGALFRHEILSR------------DPLLLAIIPKY 36


>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO,
           tungstoenzyme, tungsten containing protein,
           hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus}
           (A:230-417)
          Length = 188

 Score = 24.0 bits (52), Expect = 6.8
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 42  FGSAEQALEMIPELAQRG 59
           FG  + A ++  ++A R 
Sbjct: 135 FGDFKGAKQLALDIAYRK 152


>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic
          resistance, beta-lactam hydrolysis, benzylpenicillin,
          cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus}
          (A:1-37,A:151-258)
          Length = 145

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 6/43 (13%), Positives = 18/43 (41%)

Query: 23 RLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK 65
          +LI +  +S    + +++   + +    +I +   +    A K
Sbjct: 47 KLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADK 89


>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
           flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
           1.77A {Homo sapiens} (A:1-128,A:239-393)
          Length = 283

 Score = 23.7 bits (50), Expect = 8.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 38  MINYFGSAEQALEMIPELAQRG 59
           MI+ FG+ EQ  +  P L   G
Sbjct: 110 MIDSFGNEEQRHKFCPPLCSEG 131


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 549,617
Number of extensions: 19266
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 9
Length of query: 77
Length of database: 4,956,049
Length adjustment: 42
Effective length of query: 35
Effective length of database: 3,536,239
Effective search space: 123768365
Effective search space used: 123768365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)