BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 77

 Score =  161 bits (408), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
          MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA
Sbjct: 1  MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60

Query: 61 VYAGKRAFVQKNQQKKS 77
          VYAGKRAFVQKNQQKKS
Sbjct: 61 VYAGKRAFVQKNQQKKS 77


>gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 215

 Score = 22.3 bits (46), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 34 TCRDMINYFGSAEQALEMIPELAQRGAV 61
           C D+I+  G+   +LE++ E+     V
Sbjct: 22 ICHDIISPIGAIHNSLELLDEVGIEDEV 49


>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 20.4 bits (41), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 44  SAEQALEMIPELAQRGAV 61
           + EQALE+   L + GAV
Sbjct: 129 TGEQALEITDMLVRSGAV 146


>537021.9.peg.753_1 
          Length = 1033

 Score = 20.0 bits (40), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 37  DMINYFGSAEQALEMIPELAQR 58
           +M++ F    +ALE   E+A+R
Sbjct: 259 EMVSIFSDLPEALENTVEIARR 280


>gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 426

 Score = 20.0 bits (40), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 7   LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSA 45
           L   ++L     I+ + LI   +   + CR + N+ G+A
Sbjct: 363 LAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNA 401


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,281
Number of Sequences: 1233
Number of extensions: 1364
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 77
length of database: 328,796
effective HSP length: 47
effective length of query: 30
effective length of database: 270,845
effective search space:  8125350
effective search space used:  8125350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)