Query         gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 34
No_of_seqs    116 out of 901
Neff          4.5 
Searched_HMMs 23785
Date          Mon May 30 09:12:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780304.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3maj_A DNA processing chain A;  99.2 8.4E-12 3.5E-16   77.7   3.8   34    1-34    185-218 (382)
  2 2glx_A 1,5-anhydro-D-fructose    6.6 1.8E+02  0.0077   13.4   3.0   27    8-34     70-96  (332)
  3 2gqb_A Conserved hypothetical    4.4 2.1E+02   0.009   13.1   0.9   16   12-27    109-124 (130)
  4 3fgx_A Rbstp2171; structural g   4.3      99  0.0042   14.7  -0.9   23    5-27     70-92  (114)
  5 3ip3_A Oxidoreductase, putativ   4.3 2.7E+02   0.011   12.6   3.1   27    8-34     75-101 (337)
  6 1ydw_A AX110P-like protein; st   4.2 2.7E+02   0.011   12.6   2.7   27    8-34     79-105 (362)
  7 2h1i_A Carboxylesterase; struc   3.8 2.9E+02   0.012   12.4   3.7   31    4-34    175-207 (226)
  8 1imo_A DNA ligase III; paralle   3.8 2.4E+02    0.01   12.8   0.8   21   12-32     30-50  (88)
  9 3moi_A Probable dehydrogenase;   3.8   3E+02   0.012   12.4   3.1   26    9-34     73-98  (387)
 10 3i23_A Oxidoreductase, GFO/IDH   3.6 3.1E+02   0.013   12.3   3.0   27    8-34     73-99  (349)

No 1  
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=99.19  E-value=8.4e-12  Score=77.65  Aligned_cols=34  Identities=50%  Similarity=0.897  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             9873881089899999999998399599706998
Q gi|254780304|r    1 MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         1 l~~GiD~iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      ||+|+|++||++|++|+++|++++|++|||||+|
T Consensus       185 l~~Gld~~yP~~n~~l~~~ii~~~GllISE~pp~  218 (382)
T 3maj_A          185 LAGGHDKIYPAEHEDLLLDIIQTRGAAISEMPLG  218 (382)
T ss_dssp             CSSCTTSCSSGGGHHHHHHHHHTTCEEEECSCTT
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf             5036773157520899999997097798716988


No 2  
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=6.60  E-value=1.8e+02  Score=13.40  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=22.9

Q ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             089899999999998399599706998
Q gi|254780304|r    8 LYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         8 iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .-|..|.++..+.++.|=.++.|-|++
T Consensus        70 tp~~~H~~~~~~al~~gk~v~~EKP~~   96 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLA   96 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSC
T ss_pred             CCCHHHHHHHHHHHHCCCCEECCCCCH
T ss_conf             884465788999998699875367730


No 3  
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=4.38  E-value=2.1e+02  Score=13.09  Aligned_cols=16  Identities=19%  Similarity=0.447  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHCCEE
Q ss_conf             9999999999839959
Q gi|254780304|r   12 ENRNLLEEIWDNGGIA   27 (34)
Q Consensus        12 ~n~~L~~~I~~~gG~l   27 (34)
                      -|+++.+++.+|||-+
T Consensus       109 Lhk~vm~kLa~NgG~v  124 (130)
T 2gqb_A          109 LHKQVMSKLVANGGKL  124 (130)
T ss_dssp             HHHHHHHHHGGGSEEC
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999999908979


No 4  
>3fgx_A Rbstp2171; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.90A {Bacillus stearothermophilus}
Probab=4.26  E-value=99  Score=14.69  Aligned_cols=23  Identities=17%  Similarity=0.481  Sum_probs=17.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf             88108989999999999839959
Q gi|254780304|r    5 LDCLYPPENRNLLEEIWDNGGIA   27 (34)
Q Consensus         5 iD~iYP~~n~~L~~~I~~~gG~l   27 (34)
                      +|+|-|..-..|.+++-+.-|..
T Consensus        70 LD~i~pe~~~~L~~d~EEyPg~a   92 (114)
T 3fgx_A           70 FSCIVPEQEEELRQAAEEFPGLT   92 (114)
T ss_dssp             HTTBCGGGHHHHHHHHHHSTTHH
T ss_pred             HHHCCCCCHHHHHHHHHHCCCHH
T ss_conf             75057772899999998785275


No 5  
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=4.26  E-value=2.7e+02  Score=12.61  Aligned_cols=27  Identities=22%  Similarity=0.117  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             089899999999998399599706998
Q gi|254780304|r    8 LYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         8 iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .-|..|.+++.+.+++|=.+++|-|++
T Consensus        75 tp~~~H~~~~~~al~~gk~Vl~EKP~a  101 (337)
T 3ip3_A           75 TVFSLNGKILLEALERKIHAFVEKPIA  101 (337)
T ss_dssp             SSHHHHHHHHHHHHHTTCEEEECSSSC
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             886167999999998799699947854


No 6  
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=4.23  E-value=2.7e+02  Score=12.60  Aligned_cols=27  Identities=15%  Similarity=0.092  Sum_probs=23.0

Q ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             089899999999998399599706998
Q gi|254780304|r    8 LYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         8 iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .-|..|.+++.+.++.|=-++.|-|++
T Consensus        79 tp~~~H~~~~~~al~aGkhVl~EKPla  105 (362)
T 1ydw_A           79 LPTSLHVEWAIKAAEKGKHILLEKPVA  105 (362)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCS
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             882688999999997698599947810


No 7  
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus atcc 14579} SCOP: c.69.1.14
Probab=3.81  E-value=2.9e+02  Score=12.42  Aligned_cols=31  Identities=13%  Similarity=0.123  Sum_probs=19.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCEEEE--ECCCC
Q ss_conf             38810898999999999983995997--06998
Q gi|254780304|r    4 GLDCLYPPENRNLLEEIWDNGGIAIS--EIPFG   34 (34)
Q Consensus         4 GiD~iYP~~n~~L~~~I~~~gG~liS--E~P~G   34 (34)
                      --|.+.|.++.+-..+-+++.|+-++  +||.|
T Consensus       175 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~G  207 (226)
T 2h1i_A          175 TNDPICSSAESEELKVLLENANANVTMHWENRG  207 (226)
T ss_dssp             SSCSSSCHHHHHHHHHHHHTTTCEEEEEEESST
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             899825899999999999978998799998999


No 8  
>1imo_A DNA ligase III; parallel beta sheet; HET: DNA; NMR {Homo sapiens} SCOP: c.15.1.2 PDB: 1in1_A*
Probab=3.81  E-value=2.4e+02  Score=12.82  Aligned_cols=21  Identities=14%  Similarity=0.052  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHCCEEEEECC
Q ss_conf             999999999983995997069
Q gi|254780304|r   12 ENRNLLEEIWDNGGIAISEIP   32 (34)
Q Consensus        12 ~n~~L~~~I~~~gG~liSE~P   32 (34)
                      ..+.|.+-|+++||.++-+|-
T Consensus        30 ~~~~L~r~i~a~GG~~~~~~~   50 (88)
T 1imo_A           30 DFSRLRRYFVAFDGDLVQEFD   50 (88)
T ss_dssp             THHHHHHHHHHHTCBCCCTTC
T ss_pred             CHHHHHHHHHHCCCEEEEECC
T ss_conf             689999999982998852336


No 9  
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=3.75  E-value=3e+02  Score=12.39  Aligned_cols=26  Identities=15%  Similarity=0.038  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             89899999999998399599706998
Q gi|254780304|r    9 YPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         9 YP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      -|..|..+..+.++.|=-++.|-|++
T Consensus        73 p~~~H~~~~~~al~~gkhV~~EKPla   98 (387)
T 3moi_A           73 PHQFHCEHVVQASEQGLHIIVEKPLT   98 (387)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEECSCCC
T ss_pred             CCHHHHHHHHHHHHHCCCEECCCCCC
T ss_conf             96789999999986189565378887


No 10 
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=3.62  E-value=3.1e+02  Score=12.33  Aligned_cols=27  Identities=22%  Similarity=0.199  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             089899999999998399599706998
Q gi|254780304|r    8 LYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         8 iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .-|..|..++.+.++.|=-++.|-|++
T Consensus        73 tp~~~H~~~~~~al~agkhV~~EKP~a   99 (349)
T 3i23_A           73 TPAHTHYDLAKQAILAGKSVIVEKPFC   99 (349)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSC
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             871456788999998499187517742


Done!