Query gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 34 No_of_seqs 116 out of 901 Neff 4.5 Searched_HMMs 23785 Date Mon May 30 09:12:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780304.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3maj_A DNA processing chain A; 99.2 8.4E-12 3.5E-16 77.7 3.8 34 1-34 185-218 (382) 2 2glx_A 1,5-anhydro-D-fructose 6.6 1.8E+02 0.0077 13.4 3.0 27 8-34 70-96 (332) 3 2gqb_A Conserved hypothetical 4.4 2.1E+02 0.009 13.1 0.9 16 12-27 109-124 (130) 4 3fgx_A Rbstp2171; structural g 4.3 99 0.0042 14.7 -0.9 23 5-27 70-92 (114) 5 3ip3_A Oxidoreductase, putativ 4.3 2.7E+02 0.011 12.6 3.1 27 8-34 75-101 (337) 6 1ydw_A AX110P-like protein; st 4.2 2.7E+02 0.011 12.6 2.7 27 8-34 79-105 (362) 7 2h1i_A Carboxylesterase; struc 3.8 2.9E+02 0.012 12.4 3.7 31 4-34 175-207 (226) 8 1imo_A DNA ligase III; paralle 3.8 2.4E+02 0.01 12.8 0.8 21 12-32 30-50 (88) 9 3moi_A Probable dehydrogenase; 3.8 3E+02 0.012 12.4 3.1 26 9-34 73-98 (387) 10 3i23_A Oxidoreductase, GFO/IDH 3.6 3.1E+02 0.013 12.3 3.0 27 8-34 73-99 (349) No 1 >3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Probab=99.19 E-value=8.4e-12 Score=77.65 Aligned_cols=34 Identities=50% Similarity=0.897 Sum_probs=32.8 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 9873881089899999999998399599706998 Q gi|254780304|r 1 MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 1 l~~GiD~iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) ||+|+|++||++|++|+++|++++|++|||||+| T Consensus 185 l~~Gld~~yP~~n~~l~~~ii~~~GllISE~pp~ 218 (382) T 3maj_A 185 LAGGHDKIYPAEHEDLLLDIIQTRGAAISEMPLG 218 (382) T ss_dssp CSSCTTSCSSGGGHHHHHHHHHTTCEEEECSCTT T ss_pred ECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC T ss_conf 5036773157520899999997097798716988 No 2 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Probab=6.60 E-value=1.8e+02 Score=13.40 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=22.9 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-|..|.++..+.++.|=.++.|-|++ T Consensus 70 tp~~~H~~~~~~al~~gk~v~~EKP~~ 96 (332) T 2glx_A 70 TTNELHREQTLAAIRAGKHVLCEKPLA 96 (332) T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSSSC T ss_pred CCCHHHHHHHHHHHHCCCCEECCCCCH T ss_conf 884465788999998699875367730 No 3 >2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1 Probab=4.38 E-value=2.1e+02 Score=13.09 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHCCEE Q ss_conf 9999999999839959 Q gi|254780304|r 12 ENRNLLEEIWDNGGIA 27 (34) Q Consensus 12 ~n~~L~~~I~~~gG~l 27 (34) -|+++.+++.+|||-+ T Consensus 109 Lhk~vm~kLa~NgG~v 124 (130) T 2gqb_A 109 LHKQVMSKLVANGGKL 124 (130) T ss_dssp HHHHHHHHHGGGSEEC T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999908979 No 4 >3fgx_A Rbstp2171; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.90A {Bacillus stearothermophilus} Probab=4.26 E-value=99 Score=14.69 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=17.1 Q ss_pred CCCCCCHHHHHHHHHHHHHCCEE Q ss_conf 88108989999999999839959 Q gi|254780304|r 5 LDCLYPPENRNLLEEIWDNGGIA 27 (34) Q Consensus 5 iD~iYP~~n~~L~~~I~~~gG~l 27 (34) +|+|-|..-..|.+++-+.-|.. T Consensus 70 LD~i~pe~~~~L~~d~EEyPg~a 92 (114) T 3fgx_A 70 FSCIVPEQEEELRQAAEEFPGLT 92 (114) T ss_dssp HTTBCGGGHHHHHHHHHHSTTHH T ss_pred HHHCCCCCHHHHHHHHHHCCCHH T ss_conf 75057772899999998785275 No 5 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Probab=4.26 E-value=2.7e+02 Score=12.61 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=22.7 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-|..|.+++.+.+++|=.+++|-|++ T Consensus 75 tp~~~H~~~~~~al~~gk~Vl~EKP~a 101 (337) T 3ip3_A 75 TVFSLNGKILLEALERKIHAFVEKPIA 101 (337) T ss_dssp SSHHHHHHHHHHHHHTTCEEEECSSSC T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 886167999999998799699947854 No 6 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=4.23 E-value=2.7e+02 Score=12.60 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.0 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-|..|.+++.+.++.|=-++.|-|++ T Consensus 79 tp~~~H~~~~~~al~aGkhVl~EKPla 105 (362) T 1ydw_A 79 LPTSLHVEWAIKAAEKGKHILLEKPVA 105 (362) T ss_dssp CCGGGHHHHHHHHHTTTCEEEECSSCS T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 882688999999997698599947810 No 7 >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus atcc 14579} SCOP: c.69.1.14 Probab=3.81 E-value=2.9e+02 Score=12.42 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=19.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCEEEE--ECCCC Q ss_conf 38810898999999999983995997--06998 Q gi|254780304|r 4 GLDCLYPPENRNLLEEIWDNGGIAIS--EIPFG 34 (34) Q Consensus 4 GiD~iYP~~n~~L~~~I~~~gG~liS--E~P~G 34 (34) --|.+.|.++.+-..+-+++.|+-++ +||.| T Consensus 175 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~G 207 (226) T 2h1i_A 175 TNDPICSSAESEELKVLLENANANVTMHWENRG 207 (226) T ss_dssp SSCSSSCHHHHHHHHHHHHTTTCEEEEEEESST T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 899825899999999999978998799998999 No 8 >1imo_A DNA ligase III; parallel beta sheet; HET: DNA; NMR {Homo sapiens} SCOP: c.15.1.2 PDB: 1in1_A* Probab=3.81 E-value=2.4e+02 Score=12.82 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHCCEEEEECC Q ss_conf 999999999983995997069 Q gi|254780304|r 12 ENRNLLEEIWDNGGIAISEIP 32 (34) Q Consensus 12 ~n~~L~~~I~~~gG~liSE~P 32 (34) ..+.|.+-|+++||.++-+|- T Consensus 30 ~~~~L~r~i~a~GG~~~~~~~ 50 (88) T 1imo_A 30 DFSRLRRYFVAFDGDLVQEFD 50 (88) T ss_dssp THHHHHHHHHHHTCBCCCTTC T ss_pred CHHHHHHHHHHCCCEEEEECC T ss_conf 689999999982998852336 No 9 >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Probab=3.75 E-value=3e+02 Score=12.39 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=22.3 Q ss_pred CCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 89899999999998399599706998 Q gi|254780304|r 9 YPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 9 YP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) -|..|..+..+.++.|=-++.|-|++ T Consensus 73 p~~~H~~~~~~al~~gkhV~~EKPla 98 (387) T 3moi_A 73 PHQFHCEHVVQASEQGLHIIVEKPLT 98 (387) T ss_dssp CGGGHHHHHHHHHHTTCEEEECSCCC T ss_pred CCHHHHHHHHHHHHHCCCEECCCCCC T ss_conf 96789999999986189565378887 No 10 >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Probab=3.62 E-value=3.1e+02 Score=12.33 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.8 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-|..|..++.+.++.|=-++.|-|++ T Consensus 73 tp~~~H~~~~~~al~agkhV~~EKP~a 99 (349) T 3i23_A 73 TPAHTHYDLAKQAILAGKSVIVEKPFC 99 (349) T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSCSC T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 871456788999998499187517742 Done!