Query gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 34 No_of_seqs 116 out of 901 Neff 4.5 Searched_HMMs 13730 Date Wed Jun 1 02:17:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780304.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1in1a_ c.15.1.2 (A:) DNA liga 4.4 1.2E+02 0.0084 13.2 0.8 21 10-31 29-49 (88) 2 d2gqba1 a.282.1.1 (A:1-130) Hy 3.8 1.5E+02 0.011 12.7 0.9 16 12-27 109-124 (130) 3 d1b79a_ a.81.1.1 (A:) N-termin 3.4 1.9E+02 0.014 12.2 2.3 17 6-22 32-48 (102) 4 d1kwga3 c.23.16.5 (A:394-590) 3.1 2E+02 0.015 12.1 2.3 21 14-34 73-93 (197) 5 d1xeaa1 c.2.1.3 (A:2-122,A:267 3.0 2.1E+02 0.015 12.0 2.8 27 8-34 70-96 (167) 6 d1tlta1 c.2.1.3 (A:5-127,A:268 2.8 2.2E+02 0.016 11.9 3.6 27 8-34 69-95 (164) 7 d1ulza2 c.30.1.1 (A:1-114) Bio 2.6 2.3E+02 0.017 11.7 1.3 24 3-27 72-100 (114) 8 d1n4wa2 d.16.1.1 (A:319-450) C 2.5 2.2E+02 0.016 11.9 0.6 28 6-33 80-115 (132) 9 d3coxa2 d.16.1.1 (A:319-450) C 2.4 2.3E+02 0.017 11.8 0.6 25 5-29 79-111 (132) 10 d1r44a_ d.65.1.4 (A:) D-Ala-D- 2.2 2.6E+02 0.019 11.5 2.9 17 11-27 160-176 (202) No 1 >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Probab=4.44 E-value=1.2e+02 Score=13.22 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=15.5 Q ss_pred CHHHHHHHHHHHHHCCEEEEEC Q ss_conf 9899999999998399599706 Q gi|254780304|r 10 PPENRNLLEEIWDNGGIAISEI 31 (34) Q Consensus 10 P~~n~~L~~~I~~~gG~liSE~ 31 (34) | ..+.|.+-|+++||.++.+| T Consensus 29 p-~~~~L~r~i~a~GG~~~~~~ 49 (88) T d1in1a_ 29 P-DFSRLRRYFVAFDGDLVQEF 49 (88) T ss_dssp T-THHHHHHHHHHHTCBCCCTT T ss_pred C-CHHHHHHHHHHHCCEEEEEC T ss_conf 9-88999999998298975112 No 2 >d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=3.79 E-value=1.5e+02 Score=12.71 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHCCEE Q ss_conf 9999999999839959 Q gi|254780304|r 12 ENRNLLEEIWDNGGIA 27 (34) Q Consensus 12 ~n~~L~~~I~~~gG~l 27 (34) -|+++.+++.+|||-+ T Consensus 109 Lhk~vm~kLa~NgG~v 124 (130) T d2gqba1 109 LHKQVMSKLVANGGKL 124 (130) T ss_dssp HHHHHHHHHGGGSEEC T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999928989 No 3 >d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]} Probab=3.40 E-value=1.9e+02 Score=12.22 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=13.8 Q ss_pred CCCCCHHHHHHHHHHHH Q ss_conf 81089899999999998 Q gi|254780304|r 6 DCLYPPENRNLLEEIWD 22 (34) Q Consensus 6 D~iYP~~n~~L~~~I~~ 22 (34) +.-|-+.|+.+|+.|.+ T Consensus 32 ~dFy~~~h~~If~ai~~ 48 (102) T d1b79a_ 32 DDFYTRPHRHIFTEMAR 48 (102) T ss_dssp GGSSSHHHHHHHHHHHH T ss_pred HHHCHHHHHHHHHHHHH T ss_conf 98651989999999999 No 4 >d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]} Probab=3.13 E-value=2e+02 Score=12.07 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=15.7 Q ss_pred HHHHHHHHHHCCEEEEECCCC Q ss_conf 999999998399599706998 Q gi|254780304|r 14 RNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 14 ~~L~~~I~~~gG~liSE~P~G 34 (34) .++.++.+++||.+|.-+-.| T Consensus 73 ~~~l~~~v~~GG~lv~g~rsG 93 (197) T d1kwga3 73 EEALEAFREAEGPVLFGPRSG 93 (197) T ss_dssp HHHHHHHHTCSSCEEECTTTT T ss_pred HHHHHHHHHCCCEEEEECCCC T ss_conf 999999997898799942676 No 5 >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Probab=2.98 E-value=2.1e+02 Score=11.99 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=22.4 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-|..|.++..+.++.|=-++.|=|++ T Consensus 70 tp~~~H~~~~~~al~~gk~V~~EKP~~ 96 (167) T d1xeaa1 70 AATDVHSTLAAFFLHLGIPTFVDKPLA 96 (167) T ss_dssp SCGGGHHHHHHHHHHTTCCEEEESCSC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 321111222211122110022578782 No 6 >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Probab=2.81 E-value=2.2e+02 Score=11.89 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=22.4 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) ..|..|.+++.+.+++|=-++.|-|+. T Consensus 69 tp~~~h~~~~~~al~~gk~V~~EKPla 95 (164) T d1tlta1 69 SSTASHFDVVSTLLNAGVHVCVDKPLA 95 (164) T ss_dssp SCTTHHHHHHHHHHHTTCEEEEESSSC T ss_pred CCCHHCCCCCCCCCCCCCEEECCCCCC T ss_conf 311000123311223220012043556 No 7 >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=2.56 E-value=2.3e+02 Score=11.73 Aligned_cols=24 Identities=29% Similarity=0.442 Sum_probs=16.1 Q ss_pred CCCCCCCC-----HHHHHHHHHHHHHCCEE Q ss_conf 73881089-----89999999999839959 Q gi|254780304|r 3 GGLDCLYP-----PENRNLLEEIWDNGGIA 27 (34) Q Consensus 3 ~GiD~iYP-----~~n~~L~~~I~~~gG~l 27 (34) +|.|-++| +||.++++.+.+. |.+ T Consensus 72 ~~~daihPGyGFLSEna~Fa~~~~~~-gi~ 100 (114) T d1ulza2 72 VGADAIHPGYGFLAENAEFAKMCEEA-GIT 100 (114) T ss_dssp TTCCEEECCSSTTTTCHHHHHHHHHT-TCE T ss_pred HCCCEEECCHHHHHHHHHHHHHHHHC-CCE T ss_conf 69976763346550589999999987-998 No 8 >d1n4wa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Streptomyces sp. [TaxId: 1931]} Probab=2.51 E-value=2.2e+02 Score=11.88 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=17.7 Q ss_pred CCCCCHHH--------HHHHHHHHHHCCEEEEECCC Q ss_conf 81089899--------99999999839959970699 Q gi|254780304|r 6 DCLYPPEN--------RNLLEEIWDNGGIAISEIPF 33 (34) Q Consensus 6 D~iYP~~n--------~~L~~~I~~~gG~liSE~P~ 33 (34) +.-||+.+ +.++++|.+..|.+.+--++ T Consensus 80 ~L~Wp~~~~~~ai~~a~~~~~rin~~~g~~~~~~lf 115 (132) T d1n4wa2 80 KLNWTRDQNAPAVNAAKALFDRINKANGTIYRYDLF 115 (132) T ss_dssp EECCCGGGGHHHHHHHHHHHHHHHHHHTCCBCCSSS T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCC T ss_conf 973532157589999999999987626856614556 No 9 >d3coxa2 d.16.1.1 (A:319-450) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Probab=2.35 E-value=2.3e+02 Score=11.80 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=16.5 Q ss_pred CCCCCCHHH--------HHHHHHHHHHCCEEEE Q ss_conf 881089899--------9999999983995997 Q gi|254780304|r 5 LDCLYPPEN--------RNLLEEIWDNGGIAIS 29 (34) Q Consensus 5 iD~iYP~~n--------~~L~~~I~~~gG~liS 29 (34) .+.-||+.+ +.++++|.+..|.+.+ T Consensus 79 a~L~Wp~~~~~~~~~aa~~~~~ri~~a~gt~~~ 111 (132) T d3coxa2 79 VDLTWAQSQNQKGIDMAKKVFDKINQKEGTIYR 111 (132) T ss_dssp EEECCCGGGGHHHHHHHHHHHHHHHHHHTCCBC T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEC T ss_conf 798466546758999999999999975692562 No 10 >d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus faecium [TaxId: 1352]} Probab=2.24 E-value=2.6e+02 Score=11.50 Aligned_cols=17 Identities=35% Similarity=0.603 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHCCEE Q ss_conf 89999999999839959 Q gi|254780304|r 11 PENRNLLEEIWDNGGIA 27 (34) Q Consensus 11 ~~n~~L~~~I~~~gG~l 27 (34) ++||.|..++.++.|-. T Consensus 160 ~~NR~lL~~~M~~aGF~ 176 (202) T d1r44a_ 160 AQNRRRLRSIMENSGFE 176 (202) T ss_dssp HHHHHHHHHHHHTTTEE T ss_pred HHHHHHHHHHHHHCCCC T ss_conf 99999999999983882 Done!