RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
         (34 letters)



>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
           structure initiati midwest center for structural
           genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
          Length = 382

 Score = 34.9 bits (80), Expect = 0.005
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 1   MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34
           +AGG D +YP E+ +LL +I    G AISE+P G
Sbjct: 185 LAGGHDKIYPAEHEDLLLDIIQTRGAAISEMPLG 218


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.147    0.481 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 345,484
Number of extensions: 7783
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 34
Length of database: 5,693,230
Length adjustment: 8
Effective length of query: 26
Effective length of database: 5,499,278
Effective search space: 142981228
Effective search space used: 142981228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)