HHsearch alignment for GI: 254780305 and conserved domain: pfam01047
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=94.07 E-value=0.078 Score=30.19 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
T Consensus 2 T~~Q~~vL~~l~~~~~~s~~~la~~~~~~~~~vs~~i~~Le~~glv~R~~~ 52 (59)
T pfam01047 2 TLTQFHILRILYEHGPLTVSELAEKLGVDRSTVTRVLDRLEKKGLIERSRS 52 (59)
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 899999999999469929999999988586549999999988979886279