HHsearch alignment for GI: 254780305 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=92.28 E-value=0.27 Score=27.28 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHCCC
Q ss_conf 9999985--88988999999982999999999999999941-7986479
Q gi|254780305|r 37 VRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG-RLCHHPE 82 (95)
Q Consensus 37 ~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G-~i~~~pG 82 (95)
T Consensus 3 ~~il~~L~~~~~~vt~~~La~~l~VSr~TV~rdi~~L~~~G~~I~s~~g 51 (55)
T pfam08279 3 LQILELLLQAREPISGQELAEKLGVSRRTIRRDIKALEALGVPIESEPG 51 (55)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 9999999976999189999999698899999999999988997884689