HHsearch alignment for GI: 254780305 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=92.28  E-value=0.27  Score=27.28  Aligned_cols=46  Identities=17%  Similarity=0.300  Sum_probs=38.6

Q ss_pred             HHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHCCC
Q ss_conf             9999985--88988999999982999999999999999941-7986479
Q gi|254780305|r   37 VRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG-RLCHHPE   82 (95)
Q Consensus        37 ~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G-~i~~~pG   82 (95)
T Consensus         3 ~~il~~L~~~~~~vt~~~La~~l~VSr~TV~rdi~~L~~~G~~I~s~~g   51 (55)
T pfam08279         3 LQILELLLQAREPISGQELAEKLGVSRRTIRRDIKALEALGVPIESEPG   51 (55)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             9999999976999189999999698899999999999988997884689