HHsearch alignment of GI: 254780305 and MMDB domain: 1ub9_A_

>1ub9_A (A:) Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3}

Probab=91.79  E-value=0.081  Score=29.74  Aligned_cols=50  Identities=12%  Similarity=-0.051  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9899999998588-9889999999829999999999999999417986479
Q gi|254780305|r   33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      +..+..|+..|.. +++++-+|++.++++.+.++..|-.||=+|+|.+.+.
T Consensus        15 ~~~~~~il~~l~~~~~~t~~eLa~~~~i~~~~~s~~l~~L~~~GlV~~~~~   65 (100)
T 1ub9_A           15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV   65 (100)
T ss_dssp             SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf             999999999972678961999999885268744199998642124888876