Query gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 95
No_of_seqs 103 out of 449
Neff 5.6
Searched_HMMs 33803
Date Wed Jun 1 11:57:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780305.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1mkm_A ICLR transcriptional r 97.4 0.0002 6E-09 43.8 4.4 51 38-88 12-64 (64)
2 >2o0y_A Transcriptional regula 97.0 0.0006 1.8E-08 41.3 3.7 52 38-89 27-80 (95)
3 >1j5y_A Transcriptional regula 96.8 0.0022 6.5E-08 38.2 4.7 51 36-86 23-76 (79)
4 >3i53_A O-methyltransferase; C 96.6 0.0028 8.4E-08 37.6 4.5 55 35-89 26-80 (90)
5 >2ia2_A Putative transcription 96.5 0.0021 6.1E-08 38.4 3.1 49 37-85 24-74 (86)
6 >3hrs_A Metalloregulator SCAR; 96.4 0.0046 1.3E-07 36.5 4.7 52 38-89 10-62 (138)
7 >2g7u_A Transcriptional regula 96.4 0.0029 8.5E-08 37.6 3.5 50 38-88 18-69 (75)
8 >1fx7_A Iron-dependent repress 96.4 0.0059 1.8E-07 35.9 5.1 57 32-88 4-65 (141)
9 >3f6v_A Possible transcription 96.4 0.002 5.9E-08 38.4 2.4 52 33-84 57-108 (131)
10 >1r1t_A Transcriptional repres 96.3 0.0057 1.7E-07 36.0 4.7 54 33-86 1-54 (78)
11 >2qq9_A Diphtheria toxin repre 96.3 0.0052 1.5E-07 36.2 4.4 53 36-88 8-65 (146)
12 >2heo_A Z-DNA binding protein 96.3 0.0038 1.1E-07 36.9 3.7 60 30-89 6-67 (67)
13 >1stz_A Heat-inducible transcr 96.2 0.0079 2.3E-07 35.2 4.8 58 31-88 14-79 (105)
14 >1tw3_A COMT, carminomycin 4-O 96.0 0.0064 1.9E-07 35.7 3.7 54 35-88 11-64 (80)
15 >1on2_A Transcriptional regula 96.0 0.012 3.6E-07 34.2 4.9 52 38-89 12-64 (142)
16 >2oqg_A Possible transcription 95.9 0.0065 1.9E-07 35.7 3.4 55 32-86 19-73 (79)
17 >2vxz_A Pyrsv_GP04; viral prot 95.9 0.0063 1.9E-07 35.7 3.3 54 33-86 10-63 (165)
18 >2ip2_A Probable phenazine-spe 95.9 0.012 3.5E-07 34.3 4.4 53 36-88 30-82 (89)
19 >3f6o_A Probable transcription 95.9 0.0045 1.3E-07 36.5 2.2 53 32-84 16-68 (118)
20 >3b73_A PHIH1 repressor-like p 95.8 0.0094 2.8E-07 34.8 3.8 58 32-89 11-71 (111)
21 >2jsc_A Transcriptional regula 95.7 0.005 1.5E-07 36.3 2.0 57 32-88 19-78 (118)
22 >1r1u_A CZRA, repressor protei 95.7 0.01 3.1E-07 34.6 3.4 56 32-87 24-79 (106)
23 >2p4w_A Transcriptional regula 95.7 0.0075 2.2E-07 35.3 2.7 52 33-84 14-65 (77)
24 >2h09_A Transcriptional regula 95.6 0.014 4E-07 33.9 4.0 55 35-89 37-96 (155)
25 >2gxg_A 146AA long hypothetica 95.5 0.027 7.8E-07 32.4 5.1 57 27-83 30-86 (121)
26 >2kko_A Possible transcription 95.5 0.0083 2.4E-07 35.1 2.5 54 33-86 24-77 (82)
27 >1uly_A Hypothetical protein P 95.4 0.021 6.2E-07 32.9 4.3 52 33-84 10-61 (74)
28 >2hoe_A N-acetylglucosamine ki 95.3 0.0036 1.1E-07 37.1 0.1 49 33-81 19-67 (85)
29 >1u2w_A CADC repressor, cadmiu 95.2 0.018 5.2E-07 33.3 3.4 56 33-88 14-73 (95)
30 >2ia0_A Putative HTH-type tran 95.0 0.037 1.1E-06 31.6 4.5 53 28-80 11-64 (66)
31 >3cuo_A Uncharacterized HTH-ty 94.9 0.038 1.1E-06 31.5 4.5 57 32-88 13-73 (90)
32 >1z05_A Transcriptional regula 94.9 0.019 5.7E-07 33.1 2.9 48 33-80 38-86 (132)
33 >2pn6_A ST1022, 150AA long hyp 94.9 0.059 1.7E-06 30.5 5.4 48 33-80 2-50 (53)
34 >2e1c_A Putative HTH-type tran 94.9 0.037 1.1E-06 31.6 4.3 52 29-80 22-74 (77)
35 >1bia_A BIRA bifunctional prot 94.8 0.037 1.1E-06 31.6 4.1 54 35-88 6-61 (64)
36 >1jhf_A LEXA repressor; LEXA S 94.8 0.055 1.6E-06 30.6 4.9 56 32-87 4-68 (72)
37 >2r3s_A Uncharacterized protei 94.6 0.026 7.6E-07 32.5 3.0 53 35-88 11-63 (79)
38 >1qzz_A RDMB, aclacinomycin-10 94.6 0.036 1.1E-06 31.7 3.6 54 35-88 12-67 (83)
39 >2w25_A Probable transcription 94.4 0.047 1.4E-06 31.0 3.9 51 30-80 3-54 (56)
40 >2htj_A P fimbrial regulatory 94.4 0.037 1.1E-06 31.6 3.3 48 37-84 3-51 (81)
41 >2dbb_A Putative HTH-type tran 94.2 0.055 1.6E-06 30.6 4.0 51 30-80 5-56 (58)
42 >1qbj_A Protein (double-strand 94.2 0.091 2.7E-06 29.5 4.9 56 35-90 11-72 (81)
43 >3bdd_A Regulatory protein MAR 94.0 0.056 1.6E-06 30.6 3.5 49 34-82 2-51 (73)
44 >3f3x_A Transcriptional regula 94.0 0.033 9.9E-07 31.8 2.4 53 31-83 34-86 (122)
45 >1qgp_A Protein (double strand 93.9 0.069 2E-06 30.1 3.9 54 35-88 15-74 (77)
46 >2qlz_A Transcription factor P 93.6 0.013 3.8E-07 34.0 -0.3 55 32-86 10-64 (76)
47 >1z6r_A MLC protein; transcrip 93.5 0.13 3.9E-06 28.6 4.8 47 34-80 16-63 (107)
48 >3i4p_A Transcriptional regula 93.3 0.18 5.4E-06 27.8 5.2 47 34-80 3-50 (53)
49 >2p5v_A Transcriptional regula 93.2 0.098 2.9E-06 29.3 3.7 50 31-80 7-57 (60)
50 >2fbh_A Transcriptional regula 93.2 0.18 5.3E-06 27.9 5.0 49 34-82 3-53 (67)
51 >2cfx_A HTH-type transcription 93.1 0.11 3.1E-06 29.1 3.8 48 32-79 3-51 (55)
52 >2fsw_A PG_0823 protein; alpha 93.0 0.074 2.2E-06 30.0 2.8 52 37-88 28-86 (107)
53 >3cjn_A Transcriptional regula 93.0 0.076 2.2E-06 29.9 2.9 51 32-82 3-54 (78)
54 >3deu_A Transcriptional regula 92.9 0.27 7.9E-06 27.0 5.6 63 26-88 45-115 (139)
55 >1i1g_A Transcriptional regula 92.7 0.12 3.6E-06 28.8 3.7 48 33-80 3-51 (54)
56 >2f2e_A PA1607; transcription 92.6 0.13 4E-06 28.6 3.8 48 36-83 26-73 (86)
57 >1y0u_A Arsenical resistance o 92.5 0.2 5.8E-06 27.7 4.5 54 32-86 29-82 (96)
58 >2cyy_A Putative HTH-type tran 92.4 0.19 5.7E-06 27.7 4.3 49 32-80 5-54 (57)
59 >2eth_A Transcriptional regula 92.4 0.19 5.7E-06 27.7 4.3 53 31-83 41-94 (130)
60 >2rdp_A Putative transcription 92.4 0.18 5.2E-06 27.9 4.1 58 26-83 34-92 (127)
61 >3bj6_A Transcriptional regula 92.2 0.12 3.6E-06 28.8 3.1 55 29-83 35-90 (125)
62 >2a61_A Transcriptional regula 92.2 0.15 4.6E-06 28.2 3.6 52 32-83 3-55 (66)
63 >3bpv_A Transcriptional regula 92.2 0.14 4.2E-06 28.4 3.4 57 27-83 22-79 (114)
64 >3ech_A MEXR, multidrug resist 92.0 0.13 3.9E-06 28.6 3.1 56 28-83 31-87 (122)
65 >1ku9_A Hypothetical protein M 91.8 0.2 5.9E-06 27.6 3.8 55 29-83 21-77 (88)
66 >1ub9_A Hypothetical protein P 91.8 0.081 2.4E-06 29.7 1.8 50 33-82 15-65 (100)
67 >3cdh_A Transcriptional regula 91.8 0.38 1.1E-05 26.1 5.2 56 29-84 8-64 (103)
68 >2nnn_A Probable transcription 91.8 0.17 5.1E-06 28.0 3.4 51 33-83 3-54 (65)
69 >2fxa_A Protease production re 91.5 0.18 5.2E-06 27.9 3.3 51 32-82 2-53 (81)
70 >1z91_A Organic hydroperoxide 91.5 0.16 4.8E-06 28.1 3.1 53 31-83 4-57 (78)
71 >2hs5_A Putative transcription 91.3 0.28 8.3E-06 26.8 4.2 43 46-88 50-92 (94)
72 >3cta_A Riboflavin kinase; str 91.3 0.11 3.4E-06 29.0 2.2 56 33-88 12-68 (91)
73 >3fm5_A Transcriptional regula 91.3 0.24 7.1E-06 27.2 3.8 57 27-83 32-90 (124)
74 >3eco_A MEPR; mutlidrug efflux 91.1 0.28 8.2E-06 26.9 4.0 56 28-83 25-83 (119)
75 >2pex_A Transcriptional regula 91.0 0.26 7.7E-06 27.0 3.7 52 32-83 2-54 (71)
76 >1jgs_A Multiple antibiotic re 91.0 0.3 8.8E-06 26.7 4.0 56 27-82 27-83 (122)
77 >3hsr_A HTH-type transcription 91.0 0.24 7.1E-06 27.2 3.5 58 27-84 29-87 (119)
78 >3g3z_A NMB1585, transcription 91.0 0.27 8E-06 26.9 3.8 49 34-82 2-51 (91)
79 >2fbi_A Probable transcription 90.4 0.21 6.2E-06 27.5 2.8 49 34-82 2-51 (75)
80 >2nyx_A Probable transcription 90.4 0.21 6.3E-06 27.5 2.8 51 33-83 2-53 (64)
81 >3dp7_A SAM-dependent methyltr 90.3 0.56 1.7E-05 25.2 4.9 50 38-88 39-90 (99)
82 >3k0l_A Repressor protein; hel 90.3 0.19 5.7E-06 27.7 2.5 57 27-83 39-96 (131)
83 >3boq_A Transcriptional regula 90.2 0.23 6.9E-06 27.3 2.9 53 30-82 43-97 (133)
84 >2d1h_A ST1889, 109AA long hyp 89.9 0.33 9.8E-06 26.4 3.5 54 31-84 18-73 (109)
85 >1p4x_A Staphylococcal accesso 89.7 0.46 1.4E-05 25.7 4.1 51 33-83 2-55 (95)
86 >2hr3_A Probable transcription 89.6 0.35 1E-05 26.3 3.4 51 33-83 5-57 (94)
87 >3e6m_A MARR family transcript 89.6 0.27 7.8E-06 27.0 2.8 55 29-83 48-103 (138)
88 >1yyv_A Putative transcription 89.4 0.26 7.6E-06 27.1 2.6 46 36-81 37-83 (131)
89 >1sd4_A Penicillinase represso 89.2 0.35 1E-05 26.3 3.2 59 28-86 4-67 (73)
90 >2hzt_A Putative HTH-type tran 89.0 0.44 1.3E-05 25.8 3.6 46 37-82 17-63 (78)
91 >2frh_A SARA, staphylococcal a 88.9 0.33 9.7E-06 26.5 2.9 54 29-82 32-88 (127)
92 >3bwg_A Uncharacterized HTH-ty 88.8 0.71 2.1E-05 24.7 4.5 56 37-92 16-74 (82)
93 >1sfu_A 34L protein; protein/Z 88.8 0.49 1.5E-05 25.5 3.7 50 34-83 15-65 (75)
94 >1hsj_A Fusion protein consist 88.4 0.34 1E-05 26.4 2.7 52 32-83 2-56 (87)
95 >2qww_A Transcriptional regula 88.4 0.4 1.2E-05 26.0 3.0 52 29-80 36-88 (131)
96 >1s3j_A YUSO protein; structur 88.2 0.31 9.3E-06 26.6 2.4 55 28-82 31-86 (122)
97 >3df8_A Possible HXLR family t 88.0 0.63 1.9E-05 24.9 3.9 52 37-88 8-64 (89)
98 >3c7j_A Transcriptional regula 87.9 0.7 2.1E-05 24.7 4.0 43 46-88 48-90 (91)
99 >3dbw_A Transcriptional regula 87.9 0.8 2.4E-05 24.4 4.3 46 45-90 41-86 (226)
100 >2fa5_A Transcriptional regula 87.8 0.71 2.1E-05 24.6 4.0 53 30-82 45-98 (134)
101 >1xd7_A YWNA; structural genom 87.7 0.63 1.9E-05 24.9 3.7 51 38-88 13-66 (145)
102 >3bro_A Transcriptional regula 87.7 0.32 9.5E-06 26.5 2.2 36 48-83 2-37 (51)
103 >3lmm_A Uncharacterized protei 87.7 0.12 3.6E-06 28.8 0.0 53 32-84 105-158 (174)
104 >3by6_A Predicted transcriptio 87.4 0.66 1.9E-05 24.8 3.6 45 46-90 33-78 (106)
105 >2z99_A Putative uncharacteriz 87.3 1.3 3.9E-05 23.2 5.1 62 29-90 8-79 (81)
106 >3f8m_A GNTR-family protein tr 87.2 0.84 2.5E-05 24.3 4.1 41 46-86 34-75 (77)
107 >1lj9_A Transcriptional regula 87.1 0.32 9.4E-06 26.6 1.9 48 35-82 3-51 (87)
108 >2bv6_A MGRA, HTH-type transcr 87.0 0.22 6.4E-06 27.4 1.0 51 32-82 3-54 (76)
109 >2k4b_A Transcriptional regula 86.7 0.15 4.5E-06 28.3 0.1 62 25-86 26-92 (99)
110 >2fe3_A Peroxide operon regula 86.4 1.6 4.6E-05 22.8 5.1 51 32-82 20-77 (88)
111 >3bja_A Transcriptional regula 86.2 0.23 6.9E-06 27.3 0.8 57 26-82 25-82 (118)
112 >2g9w_A Conserved hypothetical 85.9 1.1 3.3E-05 23.6 4.1 55 31-85 6-66 (74)
113 >1p6r_A Penicillinase represso 85.7 1.2 3.5E-05 23.5 4.2 58 30-87 5-67 (82)
114 >3jw4_A Transcriptional regula 85.3 0.47 1.4E-05 25.6 2.0 55 30-84 11-68 (101)
115 >3ihu_A Transcriptional regula 85.1 0.83 2.4E-05 24.3 3.2 43 46-88 38-80 (82)
116 >2obp_A Putative DNA-binding p 85.0 2.5 7.3E-05 21.7 5.6 49 30-78 12-67 (96)
117 >1ylf_A RRF2 family protein; s 84.8 0.99 2.9E-05 23.9 3.5 46 45-90 28-74 (149)
118 >1z7u_A Hypothetical protein E 84.3 0.72 2.1E-05 24.6 2.6 44 37-80 25-69 (112)
119 >3eyy_A Putative iron uptake r 84.2 1.2 3.5E-05 23.5 3.6 49 33-81 2-56 (69)
120 >2o03_A Probable zinc uptake r 83.5 1.1 3.3E-05 23.6 3.3 57 33-89 10-77 (131)
121 >2wv0_A YVOA, HTH-type transcr 83.5 1.3 3.7E-05 23.3 3.5 43 46-88 32-75 (82)
122 >1ft9_A Carbon monoxide oxidat 83.4 1.3 3.8E-05 23.3 3.5 43 46-88 30-72 (90)
123 >3eet_A Putative GNTR-family t 83.1 1.5 4.3E-05 23.0 3.7 43 46-88 51-94 (96)
124 >3k69_A Putative transcription 82.9 0.85 2.5E-05 24.2 2.5 47 44-90 25-73 (136)
125 >2v79_A DNA replication protei 82.7 1.1 3.3E-05 23.6 3.0 56 32-87 15-80 (120)
126 >1xmk_A Double-stranded RNA-sp 82.7 0.57 1.7E-05 25.2 1.5 54 35-88 12-69 (79)
127 >2fbk_A Transcriptional regula 82.2 0.78 2.3E-05 24.4 2.0 56 28-83 63-122 (157)
128 >1mzb_A Ferric uptake regulati 82.0 3 8.9E-05 21.3 5.0 57 32-88 16-84 (86)
129 >2dk5_A DNA-directed RNA polym 80.8 4 0.00012 20.6 5.8 70 24-93 10-88 (91)
130 >3edp_A LIN2111 protein; APC88 80.7 1.9 5.7E-05 22.3 3.6 43 46-88 31-74 (76)
131 >2yu3_A DNA-directed RNA polym 80.3 4.1 0.00012 20.5 5.2 59 23-81 26-87 (95)
132 >1okr_A MECI, methicillin resi 79.9 1.6 4.8E-05 22.7 3.0 57 30-86 6-67 (73)
133 >2cg4_A Regulatory protein ASN 79.7 0.065 1.9E-06 30.3 -4.2 45 36-80 7-52 (55)
134 >2ek5_A Predicted transcriptio 78.8 1.9 5.7E-05 22.3 3.1 44 46-89 26-70 (101)
135 >3cuq_B Vacuolar protein-sorti 78.8 1.9 5.5E-05 22.4 3.1 45 36-80 4-49 (66)
136 >2fmy_A COOA, carbon monoxide 78.6 2.9 8.7E-05 21.3 4.0 43 46-88 30-72 (84)
137 >2di3_A Bacterial regulatory p 77.7 2.4 7E-05 21.8 3.3 44 46-89 26-70 (78)
138 >3ere_D Arginine repressor; X- 76.7 2.2 6.5E-05 22.0 2.9 53 36-88 22-80 (87)
139 >2csb_A Topoisomerase V, TOP61 76.0 3.6 0.00011 20.8 3.9 33 33-65 2-35 (142)
140 >1hw1_A FADR, fatty acid metab 75.7 2.8 8.3E-05 21.4 3.3 43 46-88 29-72 (77)
141 >3iwz_A CAP-like, catabolite a 75.7 3.3 9.9E-05 21.0 3.7 42 46-88 28-69 (72)
142 >3e6c_C CPRK, cyclic nucleotid 74.3 3.1 9.1E-05 21.2 3.2 40 46-85 29-68 (103)
143 >3e97_A Transcriptional regula 74.0 3.7 0.00011 20.8 3.5 42 46-87 55-96 (112)
144 >3kcc_A Catabolite gene activa 73.8 2.7 8E-05 21.5 2.8 41 46-87 28-68 (72)
145 >3bru_A Regulatory protein, TE 73.7 4.7 0.00014 20.2 4.0 30 37-66 40-69 (72)
146 >2zkz_A Transcriptional repres 73.0 3.9 0.00012 20.7 3.4 53 32-85 25-78 (99)
147 >3dv8_A Transcriptional regula 73.0 3.2 9.6E-05 21.1 3.0 40 46-85 22-61 (74)
148 >2pq8_A Probable histone acety 71.5 4.2 0.00013 20.5 3.3 48 36-86 42-91 (125)
149 >3bni_A Putative TETR-family t 71.3 6.9 0.00021 19.3 4.4 30 37-66 53-82 (85)
150 >3d0s_A Transcriptional regula 71.3 3.6 0.00011 20.8 3.0 40 46-85 29-68 (80)
151 >2fu4_A Ferric uptake regulati 71.3 6.7 0.0002 19.4 4.3 50 33-82 16-73 (83)
152 >2zcw_A TTHA1359, transcriptio 71.3 3.2 9.4E-05 21.2 2.7 41 46-86 28-68 (85)
153 >2qm3_A Predicted methyltransf 68.6 4.8 0.00014 20.2 3.1 52 32-84 41-92 (116)
154 >2gau_A Transcriptional regula 68.6 4.5 0.00013 20.3 3.0 40 46-85 28-67 (81)
155 >2d6y_A Putative TETR family r 68.3 8.2 0.00024 18.9 4.3 30 37-66 18-47 (74)
156 3bz6_A A Conserved Protein Of 68.3 7.9 0.00023 19.0 4.2 58 30-87 20-95 (183)
157 >2oz6_A Virulence factor regul 68.2 4.9 0.00014 20.1 3.1 40 46-85 28-67 (72)
158 >1q1h_A TFE, transcription fac 67.6 7.2 0.00021 19.2 3.8 45 35-79 19-65 (110)
159 >2ou2_A Histone acetyltransfer 67.4 5.1 0.00015 20.1 3.0 47 36-85 42-96 (129)
160 >3f8b_A Transcriptional regula 66.6 4.4 0.00013 20.4 2.6 44 36-79 14-65 (116)
161 >1fy7_A ESA1 histone acetyltra 65.9 5.4 0.00016 19.9 2.9 48 36-86 42-91 (123)
162 >3hhh_A Transcriptional regula 65.6 6.3 0.00019 19.5 3.2 45 35-79 14-64 (116)
163 >1b4a_A Arginine repressor; he 63.7 2.5 7.5E-05 21.7 0.9 51 36-87 7-64 (68)
164 >2w57_A Ferric uptake regulati 63.5 8.6 0.00025 18.8 3.6 52 32-83 15-74 (85)
165 >2ozu_A Histone acetyltransfer 63.0 9.1 0.00027 18.7 3.6 47 36-85 42-91 (126)
166 >1sfx_A Conserved hypothetical 62.9 8.3 0.00025 18.9 3.4 46 35-80 3-49 (64)
167 >2oi8_A Putative regulatory pr 62.9 11 0.00033 18.2 4.3 30 37-66 26-55 (58)
168 >1uxc_A FRUR (1-57), fructose 62.6 7.9 0.00023 19.0 3.3 32 48-79 1-40 (65)
169 >2bgc_A PRFA; bacterial infect 62.1 7.3 0.00022 19.2 3.0 41 46-86 62-103 (132)
170 >1lva_A Selenocysteine-specifi 62.0 12 0.00034 18.1 5.6 50 37-86 12-64 (66)
171 >1rp3_A RNA polymerase sigma f 61.4 12 0.00035 18.0 5.2 41 30-70 97-137 (150)
172 >2dql_A PEX protein; circadian 60.4 11 0.00033 18.2 3.7 46 35-80 10-62 (102)
173 >2zdb_A Transcriptional regula 59.8 6.3 0.00019 19.5 2.3 40 46-85 28-67 (85)
174 >3eyi_A Z-DNA-binding protein 59.2 2.8 8.2E-05 21.5 0.4 48 34-81 10-59 (72)
175 >2vn2_A DNAD, chromosome repli 59.0 12 0.00035 18.1 3.6 28 48-75 38-65 (65)
176 >2p8t_A Hypothetical protein P 59.0 13 0.00039 17.8 4.4 56 29-84 11-67 (200)
177 >2ras_A Transcriptional regula 58.3 12 0.00037 17.9 3.7 30 37-66 21-50 (66)
178 >1xma_A Predicted transcriptio 58.1 7.5 0.00022 19.1 2.5 46 35-80 42-95 (145)
179 >1jko_C HIN recombinase, DNA-i 58.0 9.2 0.00027 18.7 2.9 41 29-69 3-43 (52)
180 >2g7s_A Transcriptional regula 57.7 13 0.0004 17.8 3.8 30 37-66 18-47 (50)
181 >3h5t_A Transcriptional regula 57.6 9.3 0.00028 18.6 2.9 26 45-70 7-32 (60)
182 >1s7o_A Hypothetical UPF0122 p 57.5 14 0.00042 17.6 4.5 41 30-70 21-61 (73)
183 >2k9s_A Arabinose operon regul 57.2 14 0.00042 17.6 3.8 31 39-69 12-42 (46)
184 >2hsg_A Glucose-resistance amy 57.1 11 0.00033 18.2 3.3 22 48-69 3-24 (46)
185 >1neq_A DNA-binding protein NE 56.8 12 0.00035 18.1 3.3 42 29-70 4-45 (74)
186 >1v4r_A Transcriptional repres 56.8 1.7 5.1E-05 22.6 -0.9 45 46-90 33-78 (102)
187 >2of7_A Putative TETR-family t 56.6 15 0.00043 17.6 4.4 31 37-67 58-88 (95)
188 >2zb9_A Putative transcription 56.6 13 0.00039 17.8 3.6 30 37-66 33-62 (85)
189 >1xn7_A Hypothetical protein Y 56.4 13 0.00038 17.9 3.5 42 39-80 7-49 (78)
190 >2qtq_A Transcriptional regula 55.8 15 0.00045 17.5 4.3 31 37-67 26-56 (81)
191 >3fiw_A Putative TETR-family t 55.6 11 0.00032 18.3 3.0 30 37-66 35-64 (88)
192 >2o7t_A Transcriptional regula 54.7 14 0.00042 17.6 3.5 30 37-66 18-47 (50)
193 >3dew_A Transcriptional regula 53.4 16 0.00047 17.4 3.6 31 37-67 18-48 (72)
194 >3cdl_A Transcriptional regula 52.7 17 0.0005 17.2 4.4 29 37-65 19-47 (51)
195 >3dkw_A DNR protein; CRP-FNR, 52.2 13 0.00038 17.8 2.9 39 49-88 2-40 (49)
196 >3b81_A Transcriptional regula 51.7 18 0.00052 17.1 4.3 30 37-66 21-50 (80)
197 >2o8x_A Probable RNA polymeras 51.3 18 0.00053 17.1 5.0 42 29-70 13-54 (70)
198 >2w53_A Repressor, SMet; antib 51.2 18 0.00053 17.1 4.2 29 37-65 21-49 (219)
199 >1yg2_A Gene activator APHA; v 50.8 17 0.0005 17.2 3.3 45 36-80 4-56 (89)
200 >2pjp_A Selenocysteine-specifi 50.6 18 0.00055 17.0 4.4 48 38-85 11-58 (61)
201 >2pi2_A Replication protein A 50.5 3.8 0.00011 20.7 0.0 50 33-82 206-260 (270)
202 >3f2g_A Alkylmercury lyase; ME 50.4 19 0.00055 17.0 4.7 41 32-72 20-61 (220)
203 >2k02_A Ferrous iron transport 49.9 10 0.0003 18.4 2.1 37 45-81 14-50 (87)
204 >2hyj_A Putative TETR-family t 49.9 19 0.00056 17.0 3.6 30 37-66 22-51 (200)
205 >1t6s_A Conserved hypothetical 49.8 19 0.00056 16.9 3.9 54 37-90 9-73 (85)
206 >2i10_A Putative TETR transcri 49.5 19 0.00057 16.9 4.2 31 37-67 21-51 (68)
207 >1r7j_A Conserved hypothetical 49.3 18 0.00053 17.1 3.3 49 37-85 8-58 (95)
208 >3bqz_B HTH-type transcription 48.8 20 0.00058 16.9 4.2 30 37-66 12-41 (71)
209 >2zcx_A SCO7815, TETR-family t 48.5 20 0.00059 16.8 4.2 30 37-66 33-62 (231)
210 >2g7l_A TETR-family transcript 48.4 20 0.00059 16.8 3.7 30 37-66 29-58 (243)
211 >1or7_A Sigma-24, RNA polymera 48.2 20 0.0006 16.8 5.0 39 32-70 25-63 (78)
212 >1vi0_A Transcriptional regula 48.2 20 0.0006 16.8 3.7 30 37-66 18-47 (206)
213 >2np5_A Transcriptional regula 48.0 20 0.0006 16.8 3.6 30 37-66 19-48 (203)
214 >2yve_A Transcriptional regula 47.8 20 0.00061 16.8 4.2 30 37-66 14-43 (185)
215 >1zyb_A Transcription regulato 47.4 16 0.00047 17.4 2.7 40 47-86 145-184 (191)
216 >2fq4_A Transcriptional regula 47.3 21 0.00062 16.7 4.2 31 37-67 22-52 (73)
217 >3g7r_A Putative transcription 46.7 21 0.00063 16.7 4.5 30 37-66 45-74 (221)
218 >3cjd_A Transcriptional regula 46.7 21 0.00063 16.7 3.7 30 37-66 22-51 (198)
219 >3bqy_A Putative TETR family t 46.6 21 0.00063 16.7 3.5 30 37-66 12-41 (209)
220 >2gen_A Probable transcription 46.5 22 0.00064 16.7 4.3 31 37-67 17-47 (197)
221 >3col_A Putative transcription 46.2 22 0.00064 16.6 3.5 30 37-66 20-49 (196)
222 >1rkt_A Protein YFIR; transcri 46.1 22 0.00064 16.6 4.2 30 37-66 22-51 (82)
223 >2pbx_A Hemagglutinin/protease 46.1 22 0.00064 16.6 4.2 30 37-66 27-56 (203)
224 >3c2b_A Transcriptional regula 45.9 22 0.00065 16.6 3.6 31 37-67 25-55 (221)
225 >2fbq_A Probable transcription 45.8 22 0.00065 16.6 4.2 30 37-66 17-46 (235)
226 >3ic7_A Putative transcription 45.5 1.5 4.5E-05 22.9 -2.7 40 49-88 8-47 (49)
227 >3elk_A Putative transcription 45.2 7.3 0.00022 19.2 0.8 45 35-79 15-65 (94)
228 >1xsv_A Hypothetical UPF0122 p 45.1 23 0.00067 16.5 5.1 39 31-69 25-63 (76)
229 >3dpj_A Transcription regulato 45.0 23 0.00067 16.5 4.2 30 37-66 18-47 (79)
230 >3f1b_A TETR-like transcriptio 44.8 23 0.00068 16.5 4.2 30 37-66 24-53 (203)
231 >2rae_A Transcriptional regula 44.8 23 0.00068 16.5 4.2 30 37-66 27-56 (207)
232 >1qpz_A PURA, protein (purine 44.8 22 0.00065 16.6 3.1 22 49-70 2-23 (45)
233 >2hxi_A Putative transcription 44.7 21 0.00061 16.8 3.0 29 38-66 40-68 (241)
234 >3bhq_A Transcriptional regula 44.5 23 0.00068 16.5 4.4 30 37-66 22-51 (211)
235 >3iuv_A Uncharacterized TETR f 44.4 22 0.00065 16.6 3.1 30 37-66 20-49 (201)
236 >2nx4_A Transcriptional regula 44.4 23 0.00069 16.5 4.2 30 37-66 20-49 (194)
237 >2e1n_A PEX, period extender; 44.2 20 0.0006 16.8 2.9 45 36-80 11-62 (113)
238 >2dg8_A Putative TETR-family t 44.2 21 0.00062 16.7 3.0 30 37-66 19-48 (193)
239 >3knw_A Putative transcription 44.0 24 0.0007 16.4 4.4 30 37-66 24-53 (212)
240 >3ljl_A Transcriptional regula 43.8 12 0.00035 18.0 1.7 30 37-66 24-53 (60)
241 >3fx3_A Cyclic nucleotide-bind 43.3 11 0.00033 18.2 1.5 40 46-87 26-65 (86)
242 >2uxu_A HTH-type transcription 43.2 24 0.00072 16.4 4.2 31 37-67 21-51 (210)
243 >3gzi_A Transcriptional regula 43.1 23 0.00069 16.5 3.1 30 37-66 27-56 (218)
244 >3k9t_A Putative peptidase; st 43.1 10 0.0003 18.4 1.2 42 38-79 35-78 (79)
245 >2h2z_A PP1AB, ORF1AB, replica 43.1 24 0.00072 16.4 3.2 35 42-76 47-87 (117)
246 >3crj_A Transcription regulato 42.8 25 0.00073 16.3 4.4 29 37-65 24-52 (199)
247 >2zcm_A Biofilm operon icaabcd 42.7 25 0.00073 16.3 4.2 30 37-66 17-46 (192)
248 >2fd5_A Transcriptional regula 42.7 17 0.00051 17.2 2.3 29 37-65 17-45 (75)
249 >2ibd_A Possible transcription 42.6 25 0.00073 16.3 4.2 30 37-66 24-53 (204)
250 >1pb6_A Hypothetical transcrip 42.4 25 0.00074 16.3 4.2 29 38-66 29-57 (212)
251 >1t56_A EThr repressor; helix- 41.6 26 0.00076 16.2 3.3 29 38-66 35-63 (216)
252 >1ldj_A Cullin homolog 1, CUL- 41.6 26 0.00077 16.2 3.3 45 37-81 3-48 (70)
253 >2qc0_A Uncharacterized protei 41.1 18 0.00053 17.1 2.2 49 37-85 300-349 (373)
254 >1je8_A Nitrate/nitrite respon 40.9 27 0.00079 16.2 6.0 48 24-72 14-61 (82)
255 >1sgm_A Putative HTH-type tran 40.7 23 0.00069 16.5 2.8 30 37-66 16-45 (191)
256 >3egq_A TETR family transcript 40.7 20 0.00059 16.8 2.4 31 37-67 14-44 (69)
257 >2gfn_A HTH-type transcription 40.7 27 0.00079 16.1 3.5 30 37-66 19-48 (209)
258 >1u8b_A ADA polyprotein; prote 40.5 27 0.0008 16.1 4.6 33 37-69 14-47 (65)
259 >1z67_A Hypothetical protein S 40.3 27 0.0008 16.1 4.6 47 37-85 49-95 (117)
260 >2eh3_A Transcriptional regula 39.9 28 0.00082 16.1 4.3 30 37-66 12-41 (179)
261 >1ui5_A A-factor receptor homo 39.8 28 0.00082 16.1 4.2 30 37-66 19-48 (215)
262 >1zk8_A Transcriptional regula 39.3 28 0.00082 16.1 3.0 30 37-66 18-47 (183)
263 >2a6h_F RNA polymerase sigma f 39.1 28 0.00084 16.0 3.6 39 32-70 26-68 (88)
264 >3he0_A Transcriptional regula 39.1 28 0.00084 16.0 4.2 30 37-66 21-50 (196)
265 >3f0c_A TETR-molecule A, trans 39.0 29 0.00084 16.0 4.4 30 37-66 21-50 (216)
266 >2guh_A Putative TETR-family t 38.9 29 0.00085 16.0 3.3 32 36-67 41-79 (214)
267 >3bjb_A Probable transcription 38.8 29 0.00085 16.0 3.3 31 37-67 32-62 (207)
268 >2id3_A Putative transcription 38.7 29 0.00085 16.0 3.6 30 38-67 51-80 (225)
269 >2zfw_A PEX; five alpha-helice 38.5 20 0.0006 16.8 2.2 54 36-89 11-80 (113)
270 >2jj7_A Hemolysin II regulator 38.3 17 0.00049 17.3 1.7 31 37-67 17-47 (70)
271 >2qib_A TETR-family transcript 38.0 30 0.00087 15.9 3.3 30 37-66 23-52 (213)
272 >2iai_A Putative transcription 37.9 30 0.00088 15.9 3.7 30 37-66 10-39 (200)
273 >3lhq_A Acrab operon repressor 37.6 30 0.00089 15.9 4.3 30 37-66 24-53 (220)
274 >1wi9_A Protein C20ORF116 homo 37.4 30 0.00089 15.9 3.1 43 48-90 1-46 (51)
275 >3kkd_A Transcriptional regula 37.2 14 0.00041 17.7 1.2 29 38-66 46-74 (237)
276 >2opt_A Actii protein; helical 36.4 31 0.00093 15.8 3.6 31 37-67 16-46 (67)
277 >3e3m_A Transcriptional regula 36.3 8.6 0.00026 18.8 0.0 27 44-70 9-35 (221)
278 >2iu5_A DHAS, hypothetical pro 35.9 15 0.00045 17.5 1.2 29 37-65 23-51 (195)
279 >3cec_A Putative antidote prot 35.8 29 0.00087 15.9 2.7 32 38-69 22-53 (56)
280 >3frq_A Repressor protein MPHR 35.1 21 0.00061 16.8 1.8 30 37-66 18-47 (195)
281 >2esh_A Conserved hypothetical 34.5 11 0.00032 18.3 0.2 46 35-80 14-68 (118)
282 >2qko_A Possible transcription 34.3 25 0.00075 16.3 2.1 29 38-66 39-67 (215)
283 >2hxo_A Putative TETR-family t 34.1 26 0.00077 16.2 2.2 29 37-65 26-54 (237)
284 >1r71_A Transcriptional repres 34.0 35 0.001 15.5 4.1 38 32-69 37-74 (76)
285 >3geu_A Intercellular adhesion 33.7 18 0.00052 17.1 1.3 29 37-65 13-41 (189)
286 >1vz0_A PARB, chromosome parti 33.6 35 0.001 15.5 4.1 37 33-69 21-57 (59)
287 >3cwr_A Transcriptional regula 33.2 36 0.0011 15.5 3.7 30 37-66 27-56 (208)
288 >2g3b_A Putative TETR-family t 33.1 23 0.00067 16.5 1.7 31 37-67 13-43 (208)
289 >1u5t_A Appears to BE function 32.8 36 0.0011 15.4 3.8 46 32-77 2-48 (70)
290 >3dpl_C Cullin-5; ubiquitin, N 32.7 36 0.0011 15.4 4.2 39 36-74 3-44 (75)
291 >2rnj_A Response regulator pro 32.6 37 0.0011 15.4 4.0 45 26-71 24-68 (91)
292 >2p5k_A Arginine repressor; DN 32.5 23 0.00069 16.5 1.7 49 36-85 7-61 (64)
293 >3d23_B 3C-like proteinase; ma 31.5 38 0.0011 15.3 3.5 25 48-72 58-82 (112)
294 >2pz9_A Putative regulatory pr 31.2 28 0.00081 16.1 1.9 30 37-66 40-69 (226)
295 >3e7q_A Transcriptional regula 30.8 29 0.00086 16.0 1.9 30 37-66 24-53 (215)
296 >3ctp_A Periplasmic binding pr 30.6 12 0.00036 18.0 0.0 31 48-78 3-38 (200)
297 >2id6_A Transcriptional regula 30.3 22 0.00065 16.6 1.3 31 37-67 15-45 (77)
298 >2zu2_A 3C-like proteinase; pr 30.3 40 0.0012 15.2 3.1 26 47-72 54-79 (112)
299 >1ufm_A COP9 complex subunit 4 30.2 38 0.0011 15.3 2.5 36 44-79 27-62 (84)
300 >2vpr_A Tetracycline resistanc 30.2 22 0.00065 16.6 1.3 29 37-65 14-42 (68)
301 >3c07_A Putative TETR-family t 30.2 40 0.0012 15.2 4.1 29 38-66 52-80 (273)
302 >2o20_A Catabolite control pro 29.8 13 0.00038 17.9 0.0 26 45-70 3-28 (202)
303 >3iwf_A Transcription regulato 29.8 41 0.0012 15.1 3.1 46 32-77 15-65 (74)
304 >3ccy_A Putative TETR-family t 29.8 31 0.00092 15.8 2.0 29 37-65 24-52 (203)
305 >2jt1_A PEFI protein; solution 29.1 37 0.0011 15.4 2.3 46 44-89 21-71 (77)
306 >2r0q_C Putative transposon TN 28.7 39 0.0012 15.2 2.3 39 36-75 15-53 (59)
307 >3eup_A Transcriptional regula 28.0 25 0.00075 16.3 1.3 29 37-65 21-49 (204)
308 >2q6f_A Fragment, infectious b 27.7 45 0.0013 14.9 3.6 27 48-74 64-90 (121)
309 >1lvo_A Replicase, hydrolase d 27.7 45 0.0013 14.9 3.2 26 47-72 54-79 (112)
310 >1tty_A Sigma-A, RNA polymeras 27.5 45 0.0013 14.9 6.2 41 30-70 17-61 (87)
311 >2hye_C Cullin-4A, CUL-4A; bet 27.4 45 0.0013 14.9 2.5 28 45-72 2-29 (58)
312 >2gmg_A Hypothetical protein P 26.9 46 0.0014 14.9 3.6 53 31-86 8-64 (105)
313 >2ict_A Antitoxin HIGA; helix- 26.8 46 0.0014 14.9 2.7 30 37-69 14-43 (46)
314 >3him_A Probable transcription 26.7 28 0.00083 16.0 1.3 29 37-65 26-54 (211)
315 >1jye_A Lactose operon repress 26.6 16 0.00047 17.4 0.0 24 47-70 3-26 (219)
316 >3g1l_A Transcriptional regula 26.3 39 0.0012 15.3 2.0 32 35-66 45-83 (256)
317 >2v9v_A Selenocysteine-specifi 26.1 48 0.0014 14.8 3.7 47 46-93 26-74 (75)
318 >3h5o_A Transcriptional regula 25.9 17 0.00049 17.3 0.0 23 48-70 5-27 (207)
319 >3jvd_A Transcriptional regula 25.9 17 0.00049 17.3 0.0 33 47-79 6-43 (205)
320 >2o3f_A Putative HTH-type tran 25.2 50 0.0015 14.7 2.4 45 32-76 19-68 (111)
321 >2vke_A Tetracycline repressor 25.0 24 0.00072 16.4 0.7 30 37-66 13-42 (67)
322 >2a6h_F RNA polymerase sigma f 24.0 53 0.0016 14.6 5.0 34 35-69 16-51 (56)
323 >2qco_A CMER; transcriptional 23.7 28 0.00083 16.0 0.8 29 37-65 23-51 (210)
324 >1zar_A RIO2 kinase; serine ki 23.5 54 0.0016 14.5 4.2 54 31-84 9-67 (73)
325 >1x19_A CRTF-related protein; 23.3 54 0.0016 14.5 4.2 43 45-88 2-44 (57)
326 >1lva_A Selenocysteine-specifi 22.7 56 0.0017 14.4 3.5 44 46-90 26-71 (72)
327 >2w48_A Sorbitol operon regula 22.3 57 0.0017 14.4 3.0 34 44-77 18-51 (54)
328 >1hlv_A CENP-B, major centrome 21.4 60 0.0018 14.3 4.3 36 34-69 11-47 (67)
329 >2q0o_A Probable transcription 20.1 64 0.0019 14.1 5.7 40 31-71 3-42 (64)
No 1
>>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64)
Probab=97.39 E-value=0.0002 Score=43.80 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999858--89889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+|+++++ ..++.+.+|++++|+|.++++.+|-.|+=.|+|.+.+.|+|++.
T Consensus 12 ~iL~~l~~~~~~~t~~eia~~~glp~st~~Rll~tL~~~g~l~~~~~~~Y~lG 64 (64)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPG 64 (64)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEECC
T ss_conf 99999972899989999999879199999999999997798640577544227
No 2
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=97.03 E-value=0.0006 Score=41.27 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999858--898899999998299999999999999994179864798689813
Q gi|254780305|r 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 38 ~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+||+++. ..+..+-+|++++|++.+.++.+|-.||=.|+|.+.+.|+|+++.
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~tL~~~G~v~~~~~g~y~lG~ 80 (95)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATXCARSVLTSRADGSYSLGP 80 (95)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 999999747999899999999792989999999999966908984255531381
No 3
>>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79)
Probab=96.75 E-value=0.0022 Score=38.21 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=45.8
Q ss_pred HHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEEE
Q ss_conf 999999858--89889999999829999999999999999417-9864798689
Q gi|254780305|r 36 RVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKVS 86 (95)
Q Consensus 36 ~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v~ 86 (95)
+.+|++.|. ..++++++|+++.+++..+|...|-.||-.|. |.+..|||+-
T Consensus 23 ~~~Il~~L~~~~~~vt~~eLa~~l~VS~~Ti~rdl~~L~~~G~~i~~~~gGy~l 76 (79)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVL 76 (79)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEEC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEE
T ss_conf 999999999869977699999997979999999999999779978973798897
No 4
>>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90)
Probab=96.60 E-value=0.0028 Score=37.61 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999999858898899999998299999999999999994179864798689813
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.+-.|+++|...|+++++|+.++|++...+..+|--|...|++.+...|+|+++-
T Consensus 26 ~~l~if~~l~~~~~t~~eLa~~~g~~~~~l~rllr~l~~~g~~~e~~~~~y~~t~ 80 (90)
T 3i53_A 26 ATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTE 80 (90)
T ss_dssp HHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECT
T ss_pred HHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEECCH
T ss_conf 9879788972799999999988692989999999999988917975898595588
No 5
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=96.47 E-value=0.0021 Score=38.36 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999998588--9889999999829999999999999999417986479868
Q gi|254780305|r 37 VRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 37 ~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-+||+.|.. .|..+-+|++.+|++.+.++.+|-.|+-.|+|.+.+|+|.
T Consensus 24 l~IL~~l~~~~~~~tl~eia~~lg~~~st~~RlL~tL~~~g~v~~~~~~y~ 74 (86)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFW 74 (86)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSSEEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 999999973799969999999979399999999999997799665597035
No 6
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138)
Probab=96.45 E-value=0.0046 Score=36.49 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999858-898899999998299999999999999994179864798689813
Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.||..+. .+++.+.+|++..|++.+.|..++-.||=+|+|.+.+.++|+|+-
T Consensus 10 ~I~~~~~~~~~~t~~~lA~~lgis~~tvt~~l~~Le~~GlV~~~r~~~v~lT~ 62 (138)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTD 62 (138)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECH
T ss_conf 99999834998759999999789928999999999988997863895189878
No 7
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=96.42 E-value=0.0029 Score=37.58 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=43.7
Q ss_pred HHHHHHCCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999985889--889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~~~--p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+||+++... |..+-+|++.+|++.+.++..|-.||-.|+|.+-.|+| ++.
T Consensus 18 ~iL~~l~~~~~~~t~~eia~~~glp~stv~Rll~tL~~~g~l~~~~g~Y-~lG 69 (75)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRW-SLT 69 (75)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE-EEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCE-EEC
T ss_conf 9999997379998999999997919999999999999799699428743-403
No 8
>>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141)
Probab=96.41 E-value=0.0059 Score=35.88 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHH-----CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 998999999985-----889889999999829999999999999999417986479868981
Q gi|254780305|r 32 TQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L-----~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.+..+..++.+| ...++.+.+|+++.|++.+.|..+|-.||=+|+|.+.+.++|+++
T Consensus 4 Lt~~q~~~L~~I~~l~~~~~~v~~~eLA~~l~vs~~tvt~~l~kLe~~glv~~~~~~~v~lT 65 (141)
T 1fx7_A 4 LVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELT 65 (141)
T ss_dssp TSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEEC
T ss_conf 67789999999999984499751999999978991689999999987998897399877888
No 9
>>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131)
Probab=96.36 E-value=0.002 Score=38.44 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9899999998588988999999982999999999999999941798647986
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
++.+.+|+..|...|..+.+|++.+|++.+.++..|-.|+=+|+|.....|+
T Consensus 57 ~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvS~HL~~L~~aGlV~~~r~G~ 108 (131)
T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGR 108 (131)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 9999999999982991799999998878778999875498699357898779
No 10
>>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122)
Probab=96.33 E-value=0.0057 Score=35.96 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
|+.+.+|+..|...|..+.+|+...|++.++++-.|-.|+=+|+|...--|+..
T Consensus 1 dp~Rl~Il~~L~~~~~~~~ela~~l~~s~stvs~HL~~L~~aGlv~~~r~Gr~v 54 (78)
T 1r1t_A 1 DPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHV 54 (78)
T ss_dssp CHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEE
T ss_conf 999999999998199569999999891988999999999988913789875889
No 11
>>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146)
Probab=96.33 E-value=0.0052 Score=36.20 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHHH-----CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999985-----889889999999829999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L-----~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+..+|.++ ...++.+.+|+++.|++.+.|..++-.||-+|.|.+.+++++.|+
T Consensus 8 ~~~~L~~i~~l~~~~~~v~~~elA~~l~vs~~svt~~i~rLe~~GlI~~~~~~~i~lT 65 (146)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMT 65 (146)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 9999999999986599761999999978992799999999997799520587447741
No 12
>>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:)
Probab=96.31 E-value=0.0038 Score=36.91 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7999899999998588--98899999998299999999999999994179864798689813
Q gi|254780305|r 30 EYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.-....+++||+.|.. .|+..-+|++.+|++-.+|..+|-.|+=.|.|.+-.-++++++.
T Consensus 6 s~~~d~ee~IL~~L~e~g~p~~a~~Iae~lgv~kkeV~k~L~~Lkkeg~I~~~~r~~w~l~g 67 (67)
T 2heo_A 6 STGDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIGG 67 (67)
T ss_dssp ---CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEECC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 33557899999999976896879999999788889999999999877480589986204789
No 13
>>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} (A:1-105)
Probab=96.20 E-value=0.0079 Score=35.22 Aligned_cols=58 Identities=7% Similarity=0.146 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHC------CCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99989999999858------898899999998299--99999999999999417986479868981
Q gi|254780305|r 31 YTQCERVRIKQSLN------NVPIHIDDIIHHTGI--EAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 31 ~~~~~~~~Il~~L~------~~p~~iD~l~~~tgl--~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
..+.-+++||+.+- ..|.++.+|++..|+ +.++|...|-.||=+|+|.+.+||-..+.
T Consensus 14 ~lt~Rq~~IL~~I~~~~~~~g~~vtv~el~~~~~l~vS~~TvrrdL~~Le~~G~l~r~hggar~i~ 79 (105)
T 1stz_A 14 KLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGRIP 79 (105)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCBEE
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 408999999999999997429956789999872899886999999999987877158999999668
No 14
>>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} (A:30-109)
Probab=96.04 E-value=0.0064 Score=35.71 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=50.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999985889889999999829999999999999999417986479868981
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-+-.|++.|...|.++++|++++|++...+..+|--|.-.|.+.....|.|+++
T Consensus 11 ~el~if~~L~~~p~t~~eLA~~~g~~~~~l~rllr~l~~~gl~~e~~~~~y~~t 64 (80)
T 1tw3_A 11 ATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 64 (80)
T ss_dssp HHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 987977897469989999998879099999999999986796995089855469
No 15
>>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:)
Probab=96.00 E-value=0.012 Score=34.22 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999985-8898899999998299999999999999994179864798689813
Q gi|254780305|r 38 RIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 38 ~Il~~L-~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.|+... ...++++.+|+++.|++.+.|..++-.||-+|.|....+|+|.|+-
T Consensus 12 ~I~~l~~~~~~v~~~diA~~l~Vs~~sV~~~i~~L~~~GlV~~~~~~~v~LT~ 64 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTS 64 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECH
T ss_conf 99999963899769999999698878999999999977996506898667767
No 16
>>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79)
Probab=95.94 E-value=0.0065 Score=35.66 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.++.+.+|+..|...|....+|++..|++.+.++-.|-.|+-.|+|....-|+..
T Consensus 19 ~~~~R~~Il~~L~~~~~~~~ela~~l~is~~tvS~HL~~L~~aglv~~~~~G~~~ 73 (79)
T 2oqg_A 19 SDETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREI 73 (79)
T ss_dssp TCHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEE
T ss_conf 8999999999996499874477988689988999999899988977036668988
No 17
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=95.94 E-value=0.0063 Score=35.75 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
++-+.+|+..|...+..+.+|++.+|++.+.|+..|-.|+=+|+|.+.-.|+..
T Consensus 10 ~ptRl~Il~~L~~g~~tv~eLa~~lgis~~tvS~HL~~L~~~GlV~~~r~Gr~~ 63 (165)
T 2vxz_A 10 LVRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVA 63 (165)
T ss_dssp HHHHHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEE
T ss_conf 999999999997545089999998265089999999999866816999863447
No 18
>>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} (A:1-89)
Probab=95.85 E-value=0.012 Score=34.27 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=49.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999985889889999999829999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+-.|++.|...|+++++|+.++|.+...+...|=-|.-.|.+.+...|.|+.+
T Consensus 30 el~ifd~l~~g~~t~~eLa~~~g~~~~~l~rllr~l~~~g~~~e~~~~~y~~t 82 (89)
T 2ip2_A 30 RLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (89)
T ss_dssp HTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 87987898569999999998859498999999999986897675367523258
No 19
>>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:)
Probab=95.85 E-value=0.0045 Score=36.54 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99899999998588988999999982999999999999999941798647986
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
.++.+.+|+..|...|.++.+|++.+|++.+.|+-.|-.|+=.|+|....-|+
T Consensus 16 ~~~~R~~IL~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~Glv~~~~~G~ 68 (118)
T 3f6o_A 16 ADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGR 68 (118)
T ss_dssp TSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89999999999980997777779886969999999998899889862677788
No 20
>>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:)
Probab=95.82 E-value=0.0094 Score=34.80 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99899999998588-98899999998299--999999999999994179864798689813
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGI--EAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl--~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+++-..+||+.|.. .+++.-+|+..+|+ +.+.|+..|-.|+=+|+|++...|+|.|+-
T Consensus 11 ~~ptd~~ILe~L~~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L~~~GLve~~~~g~Y~lT~ 71 (111)
T 3b73_A 11 XTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITE 71 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECH
T ss_conf 4544899999998737888889886136683388999999999977875537997067177
No 21
>>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:)
Probab=95.70 E-value=0.005 Score=36.27 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 99899999998588988999999982999999999999999941798647986---8981
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
.++.+.+|+..|...|..+.+|++.+|++.+.|+-.|-.|+=.|+|...--|+ |++.
T Consensus 19 ~~~~Rl~IL~~L~~~~~~v~eLa~~l~~s~stvS~HL~~L~~~glV~~~~~G~~~~Y~l~ 78 (118)
T 2jsc_A 19 ADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALA 78 (118)
T ss_dssp SSHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEES
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 899999999999819947999999988566569999999988892179998898999988
No 22
>>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:)
Probab=95.65 E-value=0.01 Score=34.58 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999998588988999999982999999999999999941798647986898
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
.++.+.+|+..|...+..+.+|++.+|++.+.++..|-.|+=+|+|.....|+...
T Consensus 24 s~~~Rl~Il~~L~~~~~~~~ela~~l~is~stvs~HL~~L~~aglv~~~~~G~~~~ 79 (106)
T 1r1u_A 24 GDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMI 79 (106)
T ss_dssp CSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEE
T ss_conf 89999999999983994699999887658668999999999889148998878999
No 23
>>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77)
Probab=95.65 E-value=0.0075 Score=35.33 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9899999998588988999999982999999999999999941798647986
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
++.+.+|+..|..+|..+.+|++.+|++.+.++-.|-.|+=+|+|....-|+
T Consensus 14 ~p~R~~Il~~L~~~~~~~~ela~~l~is~stvs~HL~~L~~aglV~~~k~g~ 65 (77)
T 2p4w_A 14 NETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKI 65 (77)
T ss_dssp SHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCB
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999999999981998899999998909999999999999889738886323
No 24
>>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:)
Probab=95.64 E-value=0.014 Score=33.94 Aligned_cols=55 Identities=20% Similarity=0.103 Sum_probs=47.7
Q ss_pred HHHHHHHHH-----CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999999985-----8898899999998299999999999999994179864798689813
Q gi|254780305|r 35 ERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 35 ~~~~Il~~L-----~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.+..+|..+ ..+++.+.+|+++.|++.+.|..+|-.||=+|.|.+-++|.+.|+.
T Consensus 37 ~~~~~L~~I~~l~~~~~~v~~~dlA~~l~vs~~tv~~~l~~L~~~Gli~~~~~~~i~LT~ 96 (155)
T 2h09_A 37 LIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTA 96 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECH
T ss_conf 799999999999822797739999988598857899999999769977754987456637
No 25
>>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Probab=95.51 E-value=0.027 Score=32.37 Aligned_cols=57 Identities=5% Similarity=-0.020 Sum_probs=51.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 688799989999999858898899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
......+..+-.||..|+.+|+.+-+|+++++++.+.++..+-.||=+|+|.+.++-
T Consensus 30 ~~~~~lt~~q~~vL~~l~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~ 86 (121)
T 2gxg_A 30 LGELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDR 86 (121)
T ss_dssp HHTTTCCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 877697999999999998599799999999897987999999999878882342365
No 26
>>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82)
Probab=95.51 E-value=0.0083 Score=35.10 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
++.+.+|+..|..+|..+.+|++.+|++.+.++-.|-.|+=.|+|....-|+..
T Consensus 24 ~~~R~~Il~~L~~~~~~~~ela~~l~is~~tvs~HL~~L~~~glV~~~r~G~~~ 77 (82)
T 2kko_A 24 NGRRLQILDLLAQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQ 77 (82)
T ss_dssp TSTTHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEE
T ss_conf 999999999998199789999999890999999999999988922799888999
No 27
>>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83)
Probab=95.40 E-value=0.021 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9899999998588988999999982999999999999999941798647986
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
++.+.+|+..|...|..+.+|++..|++.+.++-.|-.|+=+|+|....-|+
T Consensus 10 ~p~Rl~IL~~L~~~~~~~~eia~~l~is~~tvS~HL~~L~~aglI~~~~~g~ 61 (74)
T 1uly_A 10 EDTRRKILKLLRNKEXTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEX 61 (74)
T ss_dssp SHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999999999982996899999998909999999999998889848998604
No 28
>>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:1-85)
Probab=95.29 E-value=0.0036 Score=37.07 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9899999998588988999999982999999999999999941798647
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
+..+..|++.|...|.+..+|++.+|++.+.|+.+|-+|+=+|+|....
T Consensus 19 ~~~r~~Il~lL~~g~~t~~eLa~~~gls~~tv~~~l~~L~~~glI~~~~ 67 (85)
T 2hoe_A 19 AENISRILKRIXKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (85)
T ss_dssp ---CCCSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999981992999999887959999999999999889889827
No 29
>>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122)
Probab=95.22 E-value=0.018 Score=33.33 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 9899999998588-988999999982999999999999999941798647986---8981
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
++.+.+|+..|.. .+..+.+|++.+|++.+.++-.|-.|+=.|+|.....|+ |++.
T Consensus 14 ~~tR~~Il~~L~~~~~~~v~eL~~~l~is~s~vs~HL~~L~~~GlV~~~~~g~~~~y~l~ 73 (95)
T 1u2w_A 14 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLG 73 (95)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEEC
T ss_conf 999999999998879906999998884570079999999998892589998889999988
No 30
>>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66)
Probab=94.96 E-value=0.037 Score=31.58 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 887999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.....+.-..+|+..|.. ..++..+|++.+|++.++|...+=.||=+|+|++.
T Consensus 11 ~~~~ld~~D~~IL~~L~~~~r~s~~ela~~lgls~~tv~~ri~~L~~~GvI~~y 64 (66)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (66)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 647638999999999998489999999999890999999999999844624899
No 31
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=94.94 E-value=0.038 Score=31.50 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 99899999998588-988999999982999999999999999941798647986---8981
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
.++.+.+|+..|.. ++..+.+|++..|++.+.++-.|-.|+=.|+|....-|+ |++.
T Consensus 13 ~~~~R~~Il~~L~~~~~~~~~ela~~l~is~~tvs~HL~~L~~~Glv~~~~~g~~~~y~l~ 73 (90)
T 3cuo_A 13 SHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIK 73 (90)
T ss_dssp CSHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEEC
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 8999999999997699941999999989298789999999998895179988899999988
No 32
>>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:1-105,A:403-429)
Probab=94.93 E-value=0.019 Score=33.13 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 989999999858-898899999998299999999999999994179864
Q gi|254780305|r 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+..+.+||+.|- ..+++..+|++.+|++.+.|+.+|=+|+=+|+|.+.
T Consensus 38 ~~n~~~IL~lL~~~g~~T~~eLA~~lgLS~~TVs~~L~~L~~~GlI~~~ 86 (132)
T 1z05_A 38 QINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (132)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999998599189999988796999999999999988968981
No 33
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53)
Probab=94.90 E-value=0.059 Score=30.49 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98999999985889-8899999998299999999999999994179864
Q gi|254780305|r 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 33 ~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
|.-..+|++.|..+ .+++.+|++.+|++.++|...+-.||=.|.|++.
T Consensus 2 D~~D~~IL~~L~~d~r~~~~elA~~lgvS~~tv~~ri~~L~~~GiI~~~ 50 (53)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (53)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHC
T ss_conf 8899999999998599999999999891999999999999723034310
No 34
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77)
Probab=94.88 E-value=0.037 Score=31.56 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
....|....+|++.|.. ..++..+|++.+|++.++|...+-.||=+|+|++.
T Consensus 22 ~~~ld~~D~~Il~~Lq~d~r~s~~ela~~lgis~~tv~~ri~rL~~~gvI~~~ 74 (77)
T 2e1c_A 22 RVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (77)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 58847999999999998389899999999881989999999998524550344
No 35
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=94.77 E-value=0.037 Score=31.59 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=46.2
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE-EEEE
Q ss_conf 99999998588-988999999982999999999999999941798647986-8981
Q gi|254780305|r 35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK-VSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~-v~l~ 88 (95)
-+.+|++.|.. ..+++++|++..|++..+|...+-.||=.|.+.+.-||+ |.|.
T Consensus 6 R~~~Il~~L~~~~~is~~ela~~l~vS~~Ti~rdi~~L~~~G~~i~~~~g~gY~l~ 61 (64)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (64)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEC
T ss_conf 08999999856994689999999798999999999999976961999689735978
No 36
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72)
Probab=94.75 E-value=0.055 Score=30.64 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHC------CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCC--EEEE
Q ss_conf 9989999999858------898899999998299-999999999999994179864798--6898
Q gi|254780305|r 32 TQCERVRIKQSLN------NVPIHIDDIIHHTGI-EAPVVYLVLLELDLAGRLCHHPEG--KVSL 87 (95)
Q Consensus 32 ~~~~~~~Il~~L~------~~p~~iD~l~~~tgl-~~~~v~~~LleLEL~G~i~~~pGg--~v~l 87 (95)
+..-+++||+.+- ..|.++.+|++..|+ +.+.|...|-.||=+|.|.+.+|. .+.+
T Consensus 4 LT~rq~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~Le~~G~i~r~~~~ar~i~l 68 (72)
T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRL 68 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSSSCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 39999999999999999829897699999982999737899987513422851101477543100
No 37
>>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} (A:17-95)
Probab=94.64 E-value=0.026 Score=32.45 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999985889889999999829999999999999999417986479868981
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.+-.|++.|...|.++++|+..+|++...+...|--|.-.|.+.+..|.| +++
T Consensus 11 ~elglfd~L~~~p~t~~~La~~~g~~~~~~~~lLr~L~~~g~~~~~~~~y-~~t 63 (79)
T 2r3s_A 11 VELNVFTAISQGIESSQSLAQKCQTSERGXRXLCDYLVIIGFXTKQAEGY-RLT 63 (79)
T ss_dssp HHTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE-EEC
T ss_pred HHCCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCC-CCC
T ss_conf 98797899847999999999872989899999999999779148418876-459
No 38
>>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} (A:26-108)
Probab=94.58 E-value=0.036 Score=31.68 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CEEEEE
Q ss_conf 999999985889889999999829999999999999999417986479--868981
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE--GKVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG--g~v~l~ 88 (95)
-+-.|++.|...|.++++|++++|.+...+..+|--|.-.|.+.+... |+|+++
T Consensus 12 v~L~ifd~L~~gp~t~~eLA~~~~~~~~~l~rlLr~L~~~g~~~e~~~~~~~y~~t 67 (83)
T 1qzz_A 12 ATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPT 67 (83)
T ss_dssp HHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEEC
T ss_pred HHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCEECCC
T ss_conf 98596789607998999999885919899999999998789368757888234546
No 39
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56)
Probab=94.41 E-value=0.047 Score=31.04 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
...|.-..+|++.|.. ..+++.+|++.+|++.++|..-+-.||=.|.|++.
T Consensus 3 ~~lD~~D~~Il~~Lq~~~r~~~~elA~~lg~S~~tv~~Ri~~L~~~GvI~~~ 54 (56)
T 2w25_A 3 EALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (56)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHCCC
T ss_conf 0572999999999998489999999999890999999999998401010241
No 40
>>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} (A:)
Probab=94.41 E-value=0.037 Score=31.60 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999998588-988999999982999999999999999941798647986
Q gi|254780305|r 37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
..|++.+.. .|..--+|+.++|+++=++--.|+.||=.|+|++.|.++
T Consensus 3 ~~Ilef~~e~n~~~TRdIAd~~~lSIYqAR~yLlkLekeG~V~~~p~~~ 51 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRR 51 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 3899998624896288999996528999999999986706701584540
No 41
>>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58)
Probab=94.24 E-value=0.055 Score=30.65 Aligned_cols=51 Identities=6% Similarity=0.032 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
...|.-..+|++.|.. ..+++.+|++.+|++.++|...+-.||=+|+|++.
T Consensus 5 ~~ld~~D~~Il~~L~~~~r~s~~ela~~lgis~~tv~~ri~~L~~~GvI~~y 56 (58)
T 2dbb_A 5 RKLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (58)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 7760999999999988599999999999896999999999998405521034
No 42
>>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:)
Probab=94.16 E-value=0.091 Score=29.48 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=47.1
Q ss_pred HHHHHHHHHC---C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf 9999999858---8-98899999998299999999999999994179864798--6898137
Q gi|254780305|r 35 ERVRIKQSLN---N-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG--KVSLTMH 90 (95)
Q Consensus 35 ~~~~Il~~L~---~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg--~v~l~~~ 90 (95)
.+++|++.|. . .++..-+|++.+|++-..|..+|-.|+=+|.|.+.+|+ +-+++--
T Consensus 11 ~e~kIl~~L~~~~~~~~~tA~~LAk~Lgi~Kk~vNr~LY~L~k~g~v~~~~~~PP~W~l~~~ 72 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECCC
T ss_conf 89999999985489975109999999698888989999999987883205898996374578
No 43
>>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102)
Probab=93.97 E-value=0.056 Score=30.63 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999858-89889999999829999999999999999417986479
Q gi|254780305|r 34 CERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 34 ~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+-.|+..|. ..++...+|+.+.+++.+.++..+-.||=+|+|.+.+.
T Consensus 2 ~~q~~iL~~l~~~~~~~~~~la~~~~~~~stvs~~i~~L~~~g~I~r~~~ 51 (73)
T 3bdd_A 2 LTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRN 51 (73)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99999999999869989999999987157589999999997788032528
No 44
>>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122)
Probab=93.95 E-value=0.033 Score=31.83 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99989999999858898899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.||..+..+|+.+-+|+++.|++.+.|+.++-.|+=+|+|.+.++.
T Consensus 34 ~lt~~~~~iL~~i~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~gli~r~~~~ 86 (122)
T 3f3x_A 34 NLSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS 86 (122)
T ss_dssp SCCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 99999999999999299199999999797886899999999967880131355
No 45
>>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:)
Probab=93.87 E-value=0.069 Score=30.13 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=45.4
Q ss_pred HHHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEE
Q ss_conf 9999999858----898899999998299999999999999994179864798--68981
Q gi|254780305|r 35 ERVRIKQSLN----NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG--KVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~----~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg--~v~l~ 88 (95)
.+++|++.|. .+++..-+|++.+|++-..|..+|-.|+=+|.|.+.+|+ +-+++
T Consensus 15 ~e~kIl~~L~~~~~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~l~ 74 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 74 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEEC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEC
T ss_conf 899999999965898760299999996988888899999999878953069989932605
No 46
>>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A (A:1-76)
Probab=93.56 E-value=0.013 Score=34.04 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.++-+.+|+..|...+..+-+|++.+|++.+.++-.|-.|+=+|+|....-|+..
T Consensus 10 ~~~~Rl~Il~~L~~~~~~v~eLa~~~~is~stiS~HL~~L~~~GlV~~~r~G~~~ 64 (76)
T 2qlz_A 10 GNKVRRDLLSHLTCXECYFSLLSSKVSVSSTAVAKHLKIXEREGVLQSYEKEERF 64 (76)
T ss_dssp TSHHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC--
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8999999999998199969999999891988999999999869975898645667
No 47
>>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:1-82,A:382-406)
Probab=93.50 E-value=0.13 Score=28.61 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=41.9
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999858-898899999998299999999999999994179864
Q gi|254780305|r 34 CERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 34 ~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+..||+.|- ..+++.-+|++.+|++.++|+.++-+|+-+|+|+..
T Consensus 16 ~N~~~IL~lL~~~g~~Sr~eLA~~lgLS~~TVs~iv~eL~e~GlV~e~ 63 (107)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEXLEAHLVQEL 63 (107)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 999999999998599189999988795999999999999988988962
No 48
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53)
Probab=93.30 E-value=0.18 Score=27.84 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999998588-98899999998299999999999999994179864
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.-..+|++.|.. ..+++.+|++.+|++.+.|..-+-.||=.|.|.+.
T Consensus 3 ~~D~~IL~~L~~dar~s~~elA~~lgis~~~v~~Ri~~L~~~GiI~~y 50 (53)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKXEEDGVIRRR 50 (53)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 799999999998589999999999891999999999999837974636
No 49
>>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60)
Probab=93.21 E-value=0.098 Score=29.29 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..|.-..+|++.|.. ..++..+|++++|++.++|..-+-.||=.|.|++.
T Consensus 7 ~lD~~D~~IL~~Lq~n~r~s~~elA~~lgis~~tv~~ri~kL~~~giI~~~ 57 (60)
T 2p5v_A 7 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (60)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 708999999999998369999999999897988999999999846937888
No 50
>>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101)
Probab=93.15 E-value=0.18 Score=27.87 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999858--89889999999829999999999999999417986479
Q gi|254780305|r 34 CERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 34 ~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+-.||..|. .+++.+-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 3 ~~~~~vL~~l~~~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~G~I~r~~~ 53 (67)
T 2fbh_A 3 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAV 53 (67)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999987599965999999989789889999999976566144044
No 51
>>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55)
Probab=93.09 E-value=0.11 Score=29.12 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999998588-9889999999829999999999999999417986
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.|.-..+|++.|.. ..++..+|++..|++.++|...+-.||=.|+|++
T Consensus 3 lD~~D~~IL~~L~~~~r~s~~eia~~lgis~~tv~~ri~rL~~~GiI~~ 51 (55)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (55)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 7889999999999848999999999988588899999998720124442
No 52
>>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} (A:)
Probab=93.00 E-value=0.074 Score=29.97 Aligned_cols=52 Identities=21% Similarity=0.113 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCCE------EEEE
Q ss_conf 999998588988999999982-999999999999999941798647986------8981
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHPEGK------VSLT 88 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~pGg~------v~l~ 88 (95)
-.|+..|...+..+++|.++. |++...++..|-+||=.|.|.+...+- |+|+
T Consensus 28 ~~Il~~l~~g~~rF~el~~~l~gis~~~Ls~rLk~L~~~gli~r~~~~~~p~~veY~LT 86 (107)
T 2fsw_A 28 LLIIFQINRRIIRYGELKRAIPGISEKXLIDELKFLCGKGLIKKKQYPEVPPRVEYSLT 86 (107)
T ss_dssp HHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHC
T ss_conf 99999981599879999645312486789999999998896033344899985523016
No 53
>>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125)
Probab=92.96 E-value=0.076 Score=29.90 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9989999999858-89889999999829999999999999999417986479
Q gi|254780305|r 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 32 ~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.+..+..|+.+|. .+++.+.+|++..+++.+.++..+-.||=+|+|.+.+.
T Consensus 3 l~~~~~~iL~~l~~~g~~t~~ela~~~~~~~~~vs~~i~~L~~~g~i~~~~~ 54 (78)
T 3cjn_A 3 LSTAKXRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVD 54 (78)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECC
T ss_conf 5999999999998479989999999978883324588999999885401105
No 54
>>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139)
Probab=92.91 E-value=0.27 Score=26.95 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC------EEEEE
Q ss_conf 5688799989999999858-8-98899999998299999999999999994179864798------68981
Q gi|254780305|r 26 THYPEYTQCERVRIKQSLN-N-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG------KVSLT 88 (95)
Q Consensus 26 ~~~p~~~~~~~~~Il~~L~-~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg------~v~l~ 88 (95)
.......+..+-.||..|. . .++.+.+|+++.+++.+.++..+-.||=+|+|.+.+.. +|+|+
T Consensus 45 ~~~~~gl~~~~~~iL~~l~~~~~~~t~~~La~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT 115 (139)
T 3deu_A 45 RLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (139)
T ss_dssp HTTTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEC
T ss_conf 98876979999999999997698999999999989699899999999996988798620689875788989
No 55
>>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54)
Probab=92.75 E-value=0.12 Score=28.77 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9899999998588-98899999998299999999999999994179864
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
|.-..+|++.|.. ..+++.+|++.+|++.++|..-+-.||=+|+|++.
T Consensus 3 d~~D~~Il~~L~~n~r~s~~~la~~lgiS~~tv~~ri~kLe~~GvI~~y 51 (54)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (54)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 8899999999998589899999999890999999999998606961241
No 56
>>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} (A:1-86)
Probab=92.65 E-value=0.13 Score=28.57 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999858898899999998299999999999999994179864798
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.-.|+..|...+....+|.+..|++...++..|-+||-.|.+++....
T Consensus 26 ~~~Il~~l~~g~~rF~el~~~l~iS~k~Ls~rL~~L~~~gi~rk~~~~ 73 (86)
T 2f2e_A 26 SXLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVXVAVPAE 73 (86)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 999999997499779999998744088999999999970144564688
No 57
>>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=92.48 E-value=0.2 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.++.+.+|+..|. ++..+-+|++.++++.++++..|-.|+=+|+|...-.||..
T Consensus 29 ~~p~R~~Il~~L~-~~~~~~eLa~~~~i~~stvs~HL~~L~~agLV~~~r~g~~~ 82 (96)
T 1y0u_A 29 TNPVRRKILRXLD-KGRSEEEIXQTLSLSKKQLDYHLKVLEAGFCIERVGERWVV 82 (96)
T ss_dssp SCHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCHHHHHHHHHHC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf 8999999999844-54178899999893988999999999868958970887998
No 58
>>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57)
Probab=92.42 E-value=0.19 Score=27.73 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99899999998588-98899999998299999999999999994179864
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.|.-..+|+..|.. ..+++.+|++++|++.++|...+-.||=.|.|++.
T Consensus 5 ld~~D~~IL~~L~~d~r~s~~elA~~lgvS~~tv~~ri~~L~~~GiI~~~ 54 (57)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (57)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 70999999999997489999999999892989999999999733430211
No 59
>>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130)
Probab=92.39 E-value=0.19 Score=27.70 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.||..|.. .++.+.+|+++.+++.+.++.++-.||=+|+|.+.++-
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~eLa~~~~i~~~~vs~~i~~L~~~glv~r~~~~ 94 (130)
T 2eth_A 41 DXKTTELYAFLYVALFGPKKXKEIAEFLSTTKSNVTNVVDSLEKRGLVVREXDP 94 (130)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999999998599599999999896998999999999878884565203
No 60
>>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127)
Probab=92.37 E-value=0.18 Score=27.92 Aligned_cols=58 Identities=5% Similarity=-0.054 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 56887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 26 THYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 26 ~~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.......+..+-.||..|+. .++.+-+|++.++++.+.++.++-.||=+|+|.+.+.-
T Consensus 34 ~~~~~~lt~~~~~iL~~i~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~glV~r~~~~ 92 (127)
T 2rdp_A 34 ILTNYPITPPQFVALQWLLEEGDLTVGELSNKXYLACSTTTDLVDRXERNGLVARVRDE 92 (127)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98777979999999999997799499999998784524488999989978865100124
No 61
>>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125)
Probab=92.22 E-value=0.12 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8799989999999858-898899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
....+..+-.||..|. .+++.+.+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 35 ~~~lt~~q~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~GlV~r~~~~ 90 (125)
T 3bj6_A 35 REGVTVGQRAILEGLSLTPGATAPQLGAALQXKRQYISRILQEVQRAGLIERRTNP 90 (125)
T ss_dssp HTTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 76989999999999998699899999999886575899999999870655765526
No 62
>>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94)
Probab=92.20 E-value=0.15 Score=28.23 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.+..+-.||.+|.. ++..+.+|++..+++.+.++.++-.||=+|+|.+.+.-
T Consensus 3 ls~~~~~vL~~l~~~~~~t~~~la~~~~~s~~~~s~~i~~L~~~Glv~r~~~~ 55 (66)
T 2a61_A 3 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 55 (66)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 89999999999987699899999988298988999999999724686642347
No 63
>>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114)
Probab=92.16 E-value=0.14 Score=28.41 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
......+..+-.||..|+. +++.+.+|+...+++.+.++.++-.||=+|+|.+.+..
T Consensus 22 ~~~~~lt~~q~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~ 79 (114)
T 3bpv_A 22 LGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (114)
T ss_dssp SGGGTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 7427979999999999985899899999999896988999999999968986861158
No 64
>>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122)
Probab=92.05 E-value=0.13 Score=28.60 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..-..+..+-.||..|+. +++++-+|++.++++.+.++.++-.||=+|+|.+.+..
T Consensus 31 ~~~~lt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~G~I~r~~~~ 87 (122)
T 3ech_A 31 QRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP 87 (122)
T ss_dssp TTCCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCC
T ss_conf 268989999999999998799899999999793572699999999996132000167
No 65
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=91.80 E-value=0.2 Score=27.64 Aligned_cols=55 Identities=18% Similarity=0.017 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87999899999998588--98899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+...+..+-.||..|.. +++.+-+|++.++++.+.++.++-.||=+|+|.+.++.
T Consensus 21 ~~gls~~q~~vL~~l~~~~g~~t~~~La~~~~~~~~~vs~~i~~Le~~G~I~r~~~~ 77 (88)
T 1ku9_A 21 IHGLNKSVGAVYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFVRKVWIK 77 (88)
T ss_dssp HTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 819799999999999976989699999978486651499999999988998985289
No 66
>>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:)
Probab=91.79 E-value=0.081 Score=29.74 Aligned_cols=50 Identities=12% Similarity=-0.051 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
+..+..|+..|.. +++++-+|++.++++.+.++..|-.||=+|+|.+.+.
T Consensus 15 ~~~~~~il~~l~~~~~~t~~eLa~~~~i~~~~~s~~l~~L~~~GlV~~~~~ 65 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf 999999999972678961999999885268744199998642124888876
No 67
>>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133)
Probab=91.78 E-value=0.38 Score=26.14 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 87999899999998588-988999999982999999999999999941798647986
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
....+..+-.||..|.. .++.+-+|++..+++.+.++..+-.||=+|+|.+.+..-
T Consensus 8 ~~~l~~~~~~iL~~i~~~~~~t~~~la~~~~~~~~~vsr~i~~L~~~g~i~r~~~~~ 64 (103)
T 3cdh_A 8 AQGLRVPEWRVLACLVDNDAXXITRLAKLSLXEQSRXTRIVDQXDARGLVTRVADAK 64 (103)
T ss_dssp HTTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC
T ss_conf 839799999999999818895999999996888643655699987222435423678
No 68
>>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99)
Probab=91.75 E-value=0.17 Score=27.98 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+..+-.++..|.. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 3 t~~~~~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~i~~L~~~g~I~r~~~~ 54 (65)
T 2nnn_A 3 TPTQWAALVRLGETGPCPQNQLGRLTAXDAATIKGVVERLDKRGLIQRSADP 54 (65)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 9999999999998799399999998787853142899999867880464535
No 69
>>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125)
Probab=91.54 E-value=0.18 Score=27.91 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.+..+-.||..|.. .+..+-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 2 lt~~q~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~g~i~r~~~ 53 (81)
T 2fxa_A 2 LNINEHHILWIAYQLNGASISEIAKFGVXHVSTAFNFSKKLEERGYLRFSKR 53 (81)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCC
T ss_conf 9999999999999769958999999984575537799999998799656558
No 70
>>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111)
Probab=91.53 E-value=0.16 Score=28.14 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.||..|.. .+..+-+|++..+++.+.++..+-.||=+|+|.+.+..
T Consensus 4 glt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~I~r~~~~ 57 (78)
T 1z91_A 4 NITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE 57 (78)
T ss_dssp CCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 989999999999885899999999999796876688999999978997861388
No 71
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=91.35 E-value=0.28 Score=26.83 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.++..+|++..|++.+.|..+|-.|+-.|+|.+.+|.-+.++
T Consensus 50 ~~l~e~~La~~~~vSr~tvR~al~~L~~~Gli~~~~~~G~~V~ 92 (94)
T 2hs5_A 50 ARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVR 92 (94)
T ss_dssp CEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9869999999979599999999999998878631226776220
No 72
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91)
Probab=91.34 E-value=0.11 Score=28.96 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9899999998588-9889999999829999999999999999417986479868981
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+..+-.|+..|.. .++++.+|++..+++.+.++.++-.||=+|+|.+...|+...-
T Consensus 12 ~~~~~~iL~~i~~~~~~t~~ela~~l~i~~~~vs~~i~~L~~~gli~r~~D~R~~~i 68 (91)
T 3cta_A 12 AIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQIL 68 (91)
T ss_dssp HHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEE
T ss_conf 999999856404799838999999988788799999999998899899734983334
No 73
>>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124)
Probab=91.33 E-value=0.24 Score=27.20 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 688799989999999858-8-98899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLN-N-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~-~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
......+..+-.||..|. . .++.+.+|+..++++.+.++..+-.||=+|+|.+.+..
T Consensus 32 ~~~~~lt~~q~~iL~~l~~~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~glI~r~~~~ 90 (124)
T 3fm5_A 32 LVPTGLRVRSYSVLVLACEQAEGVNQRGVAATXGLDPSQIVGLVDELEERGLVVRTLDP 90 (124)
T ss_dssp HGGGTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC----
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 98849899999999999985989899999999788777788999999986985651488
No 74
>>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119)
Probab=91.14 E-value=0.28 Score=26.87 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=48.1
Q ss_pred CCCCCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 887999899999998588---98899999998299999999999999994179864798
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.....+..+-.|+..|.. .++.+.+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 25 ~~~~l~~~~~~vL~~l~~~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~r~~~~ 83 (119)
T 3eco_A 25 EQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (119)
T ss_dssp GGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 88597999999999999559999799999999896888999999999988896516898
No 75
>>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114)
Probab=91.01 E-value=0.26 Score=27.02 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9989999999858-898899999998299999999999999994179864798
Q gi|254780305|r 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 32 ~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.+..+-.||..+. ..+..+-+|++..+++.+.++.++-.|+=+|+|.+.+..
T Consensus 2 lt~~~~~iL~~i~~~~~~t~~~la~~~~i~~~~~s~~i~~L~~~g~i~r~~~~ 54 (71)
T 2pex_A 2 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 54 (71)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 89999999999984799899999999796887899999999988998981089
No 76
>>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122)
Probab=91.00 E-value=0.3 Score=26.69 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6887999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
......+..+-.||..|.. .++.+.+|++..+++.+.++..+-.|+=+|+|.+.+.
T Consensus 27 ~~~~~lt~~~~~iL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~g~i~r~~~ 83 (122)
T 1jgs_A 27 LSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPN 83 (122)
T ss_dssp HTTTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 878597999999999998779989999999989788689999999986898798446
No 77
>>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119)
Probab=90.97 E-value=0.24 Score=27.19 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 6887999899999998588-988999999982999999999999999941798647986
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
......+..+-.||..|.. .++.+-+|+.+.+++.+.++.++-.||=+|+|.+.....
T Consensus 29 ~~~~~lt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~ 87 (119)
T 3hsr_A 29 LKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEK 87 (119)
T ss_dssp HGGGTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 98859899999999999877998999999998968868999999998179569854378
No 78
>>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120)
Probab=90.95 E-value=0.27 Score=26.91 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+-.||..|.. .++..-+|++.++++.+.++.++=.|+=+|+|.+.+.
T Consensus 2 ~~q~~iL~~l~~~~~~t~~eia~~l~~~~~~vs~~i~~L~~~g~i~~~~~ 51 (91)
T 3g3z_A 2 YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEG 51 (91)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEEC
T ss_conf 99999999999869949999999989789899999999983100200026
No 79
>>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109)
Probab=90.37 E-value=0.21 Score=27.52 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=43.3
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+-.||..|.. .++.+-+|+...+++.+.++..+=.||-+|+|.+...
T Consensus 2 ~~q~~iL~~l~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~g~i~r~~~ 51 (75)
T 2fbi_A 2 EQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKA 51 (75)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999999869989999999988678889999999997898798531
No 80
>>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106)
Probab=90.36 E-value=0.21 Score=27.49 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+..+-.|+..|.. +++.+-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 2 t~~q~~vL~~l~~~~~~t~~ela~~~~~~~~t~s~~i~~L~~~glI~r~~~~ 53 (64)
T 2nyx_A 2 TIPQFRTLVILSNHGPINLATLATLLGVQPSATGRXVDRLVGAELIDRLPHP 53 (64)
T ss_dssp CHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 9999999999985799799999999888787779999735018643565324
No 81
>>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:1-99)
Probab=90.31 E-value=0.56 Score=25.22 Aligned_cols=50 Identities=26% Similarity=0.209 Sum_probs=43.4
Q ss_pred HHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999858--89889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-||+.|+ .+-.++++|+++|+++-=.| .+|+++-|.+.+.-.-+++|.|+
T Consensus 39 GIL~~Ld~~~~G~t~~ei~~~t~lS~Yav-~vLLdm~LS~g~v~~~~~~y~L~ 90 (99)
T 3dp7_A 39 GIFQLLSGKREGYTLQEISGRTGLTRYAA-QVLLEASLTIGTILLEEDRYVLA 90 (99)
T ss_dssp THHHHHHTCTTCBCHHHHHHHHTCCHHHH-HHHHHHHHHHTSEEEETTEEEEC
T ss_pred CHHHHHHCCCCCCCHHHHHHHHCCCHHHH-HHHHHHHHHCCCEEEECCEEECC
T ss_conf 97899842999989999998729698999-99999998488389969999729
No 82
>>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131)
Probab=90.28 E-value=0.19 Score=27.73 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
......+..+-.||..|.. .++.+-+|++.++++.+.++.++-.||=+|+|.+.++-
T Consensus 39 ~~~~glt~~q~~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~~L~~~GlV~r~~~~ 96 (131)
T 3k0l_A 39 LSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDP 96 (131)
T ss_dssp HHTTTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 8675989999999999996799799999998588946489999999987984674347
No 83
>>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133)
Probab=90.21 E-value=0.23 Score=27.28 Aligned_cols=53 Identities=8% Similarity=-0.015 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7999899999998588--9889999999829999999999999999417986479
Q gi|254780305|r 30 EYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
...+..+-.|+..|.. +++.+-+|+++.+++.+.|+.++-.||=+|+|.+.++
T Consensus 43 ~~lt~~~~~il~~l~~~~~~~t~~~la~~l~i~~~~vs~~i~~Le~~GlI~r~~~ 97 (133)
T 3boq_A 43 TGLSLAKFDAXAQLARNPDGLSXGKLSGALKVTNGNVSGLVNRLIKDGXVVKAXS 97 (133)
T ss_dssp HSCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--
T ss_pred HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 0939999999999985899988999998877789899999999986888676106
No 84
>>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:)
Probab=89.89 E-value=0.33 Score=26.43 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred CCCHHHHHHH-HHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9998999999-985-88988999999982999999999999999941798647986
Q gi|254780305|r 31 YTQCERVRIK-QSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 31 ~~~~~~~~Il-~~L-~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
..+..+..|+ ..+ ...++...+|+...+++.+.++.+|-.||=+|+|.+.+...
T Consensus 18 ~ls~~~~~vll~~l~~~~~~t~~eLa~~l~i~~~tvs~~l~~L~~~glI~r~~~~~ 73 (109)
T 2d1h_A 18 KITDTDVAVLLKXVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEG 73 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCC
T ss_conf 95999999999999849698999999997887234999999999879863626877
No 85
>>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250)
Probab=89.66 E-value=0.46 Score=25.67 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9899999998588---98899999998299999999999999994179864798
Q gi|254780305|r 33 QCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 33 ~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+..+-.|+..|.. .++.+.+|++..+++.+.++..+-.||=+|+|.+.+..
T Consensus 2 t~~q~~iL~~l~~~~~~~~t~~~la~~l~~~~~~~s~~i~~L~~~G~I~r~~~~ 55 (95)
T 1p4x_A 2 SFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 55 (95)
T ss_dssp CHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 999999999998599996769999999788851599999999988998972799
No 86
>>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123)
Probab=89.64 E-value=0.35 Score=26.32 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 989999999858--898899999998299999999999999994179864798
Q gi|254780305|r 33 QCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 33 ~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+..+-.++..|. .+++.+-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 5 t~~~~~vL~~l~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~GlI~r~~~~ 57 (94)
T 2hr3_A 5 QFSQLVVLGAIDRLGGDVTPSELAAAERXRSSNLAALLRELERGGLIVRHADP 57 (94)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999976999899999999797988999999999866976864275
No 87
>>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138)
Probab=89.60 E-value=0.27 Score=26.96 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+...+..+-.||..|.. .++.+-+|+++.+++.+.++.++-.||=+|+|.+.+..
T Consensus 48 ~~glt~~q~~iL~~l~~~~~~t~~ela~~~~~~~~~~s~~v~~L~~~glv~r~~~~ 103 (138)
T 3e6m_A 48 SEKLPTPKLRLLSSLSAYGELTVGQLATLGVXEQSTTSRTVDQLVDEGLAARSISD 103 (138)
T ss_dssp HHTCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 85979999999999985699699999999774798882999987418887750478
No 88
>>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} (A:)
Probab=89.36 E-value=0.26 Score=27.05 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999998588988999999982-999999999999999941798647
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
.-.|+..|...+..+.+|.+.. |++...+...|-+||=.|+|.|..
T Consensus 37 ~~~Il~~L~~g~~rf~el~~~l~giS~~~Ls~rLk~L~~~Glv~R~~ 83 (131)
T 1yyv_A 37 GVLILVALRDGTHRFSDLRRXXGGVSEXXLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999739986999998833310588999999999779315552
No 89
>>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} (A:1-73)
Probab=89.21 E-value=0.35 Score=26.29 Aligned_cols=59 Identities=3% Similarity=0.026 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 887999899999998588-988999999982----99999999999999994179864798689
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.....+..|.+|++.|=. +|+.+-+|.... ++..++|...|-.|+=+|.|.+.-.|+..
T Consensus 4 ~~~~L~~~E~~iM~~iW~~~~~t~~ei~e~l~~~~~~~~sTv~T~L~RL~~KG~v~~~k~gr~~ 67 (73)
T 1sd4_A 4 KQVEISXAEWDVXNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIY 67 (73)
T ss_dssp -CCCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCE
T ss_conf 6799899999999999848997899999985243698487799999999845040454268857
No 90
>>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} (A:1-78)
Probab=89.02 E-value=0.44 Score=25.78 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999998588988999999982-9999999999999999417986479
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
-.|+..|...+.++.+|.+.. |++...++..|-+||-.|.|.+..-
T Consensus 17 l~Il~~l~~g~~rF~el~r~l~gis~~~Ls~~Lk~L~~~glv~r~~~ 63 (78)
T 2hzt_A 17 XVILXHLTHGKKRTSELKRLXPNITQKXLTQQLRELEADGVINRIVY 63 (78)
T ss_dssp HHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998199859999967615474889999999999898872265
No 91
>>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:)
Probab=88.88 E-value=0.33 Score=26.46 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHCCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 879998999999985889---889999999829999999999999999417986479
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNV---PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~---p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
....+..+-.|+..|... ++.+-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 32 ~~gl~~~~~~iL~~l~~~~~~~~t~~ela~~l~i~~~~vs~~v~~L~~~g~v~r~~~ 88 (127)
T 2frh_A 32 EFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp TTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEEEC
T ss_conf 749899999999999846899918999999979898689999999970203134421
No 92
>>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82)
Probab=88.84 E-value=0.71 Score=24.66 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=46.2
Q ss_pred HHHHH-HHCC-CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99999-8588-988-99999998299999999999999994179864798689813799
Q gi|254780305|r 37 VRIKQ-SLNN-VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92 (95)
Q Consensus 37 ~~Il~-~L~~-~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~~ 92 (95)
..|+. .+.. +.+ ++.+|++..|.+...|..++-+|+-.|+|...+|.-+.++.+.+
T Consensus 16 ~~I~~g~~~~G~~LPs~~~la~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~ 74 (82)
T 3bwg_A 16 TYIEEHQLQQGDKLPVLETLXAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKR 74 (82)
T ss_dssp HHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCC
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 99984999992999069999999893999999999999986121514885579998865
No 93
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=88.81 E-value=0.49 Score=25.50 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
....+++..|+. +-++.-+|++..|++-..|..+|..||=+|.|.+.+|+
T Consensus 15 e~~~~~~~~L~~~~~~tA~~lAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~~ 65 (75)
T 1sfu_A 15 SLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 999999973875442219999988630087888999999868965442499
No 94
>>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487)
Probab=88.39 E-value=0.34 Score=26.38 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99899999998588---98899999998299999999999999994179864798
Q gi|254780305|r 32 TQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 32 ~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.+..+-.|+..|.. +++...+|++..+++.+.++.++-.||=+|+|.+.+.-
T Consensus 2 lt~~~~~iL~~l~~~~~~~~t~~~l~~~l~~~~~~vs~~i~~L~~~g~i~r~~~~ 56 (87)
T 1hsj_A 2 LNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL 56 (87)
T ss_dssp CCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 1302899999999861578649999864167811204889887751210111357
No 95
>>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131)
Probab=88.37 E-value=0.4 Score=25.99 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
....+..+-.|+..|.. .++.+-+|+++.+++.+.|+..+-.||=+|+|.|.
T Consensus 36 ~~~lt~~q~~iL~~i~~~~~~t~~~la~~l~~~~s~vs~~i~~L~~~glV~r~ 88 (131)
T 2qww_A 36 SLGLTIQQLAXINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKL 88 (131)
T ss_dssp HHTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEES
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 74998899999999998799899999999786446662665799987786523
No 96
>>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122)
Probab=88.16 E-value=0.31 Score=26.58 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 887999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.+...+..+-.||..|+. .++++-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 31 ~~~~ls~~q~~iL~~i~~~~~~t~~ela~~~~i~~~~vsr~v~~L~~~g~v~r~~~ 86 (122)
T 1s3j_A 31 EKQGVTPAQLFVLASLKKHGSLKVSEIAERXEVKPSAVTLXADRLEQKNLIARTHN 86 (122)
T ss_dssp HHTTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78598999999999999869979999999989699899999999986242552023
No 97
>>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} (A:23-111)
Probab=88.03 E-value=0.63 Score=24.92 Aligned_cols=52 Identities=21% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHCCCC--CCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCCE--EEEE
Q ss_conf 99999858898--8999999982-999999999999999941798647986--8981
Q gi|254780305|r 37 VRIKQSLNNVP--IHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHPEGK--VSLT 88 (95)
Q Consensus 37 ~~Il~~L~~~p--~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~pGg~--v~l~ 88 (95)
-.|+..|...+ .++.+|.+.. |++...++..|-+||-.|.|.+....+ |+|+
T Consensus 8 ~~Il~~l~~g~~~~rF~el~~~i~~is~~~Ls~~Lk~L~~~glv~r~~p~~veY~LT 64 (89)
T 3df8_A 8 XLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALT 64 (89)
T ss_dssp HHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEC
T ss_conf 999999980999887999985487776036999999999856440127996478759
No 98
>>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91)
Probab=87.91 E-value=0.7 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+...+|++..|++...|..+|-+|+-.|+|...+|.-+.++
T Consensus 48 ~~l~e~~La~~~gvSr~tvr~Al~~L~~~Glv~~~~~~G~~Va 90 (91)
T 3c7j_A 48 TALRQQELATLFGVSRXPVREALRQLEAQSLLRVETHKGAVVA 90 (91)
T ss_dssp CBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 9638999999988695499999999999642311233310110
No 99
>>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* (A:)
Probab=87.89 E-value=0.8 Score=24.37 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8988999999982999999999999999941798647986898137
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95)
.+.+...+|+++.|++.+.|-.+|-.|+-.|+|.+.+|+-+.+...
T Consensus 41 G~~Lpe~~La~~~gVSR~tVReAl~~L~~eGli~~~~g~g~~V~~~ 86 (226)
T 3dbw_A 41 GEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDV 86 (226)
T ss_dssp TCBCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 0977999999998919999999999999789768536986545531
No 100
>>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134)
Probab=87.79 E-value=0.71 Score=24.65 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
...+..+-.||..|.. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 45 ~~~t~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~~Le~~Glv~r~~~ 98 (134)
T 2fa5_A 45 YGXAIPEWRVITILALYPGSSASEVSDRTAXDKVAVSRAVARLLERGFIRRETH 98 (134)
T ss_dssp HCCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf 199999999999998589979999999988488899999999831882533056
No 101
>>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} (A:)
Probab=87.73 E-value=0.63 Score=24.94 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=42.3
Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEE
Q ss_conf 9999858-898899999998299999999999999994179864--79868981
Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~--pGg~v~l~ 88 (95)
+++-.|. .+++++++|+++.|++...+..++-.|--+|.|... +||.|.+.
T Consensus 13 ~~l~~La~~~~~s~~~Iae~~~i~~~~l~kil~~L~~~gli~s~rG~~GGy~lr 66 (145)
T 1xd7_A 13 HILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKK 66 (145)
T ss_dssp HHHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEECC
T ss_conf 999998549998999999886939999999999998879077368998972358
No 102
>>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100)
Probab=87.73 E-value=0.32 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999998299999999999999994179864798
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+.+.+|+++++++.+.++.++-.||-+|+|.|.+..
T Consensus 2 it~~~la~~l~~~~~t~s~~i~~Le~~gli~r~~~~ 37 (51)
T 3bro_A 2 VLQRDLESEFSIKSSTATVLLQRXEIKKLLYRKVSG 37 (51)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899999988777823699999999888887750123
No 103
>>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583)
Probab=87.68 E-value=0.12 Score=28.82 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99899999998588-988999999982999999999999999941798647986
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
.+..+..+++.|.. ..+...+|++.+|++.+++...|-.|+-+|+|.+..+|+
T Consensus 105 ~~~~~~~i~~~l~~~~~it~~ei~~~~gis~~ti~r~L~~L~~~G~i~~~g~gr 158 (174)
T 3lmm_A 105 QAELTNAAXLWLSEVGDLATSDLXAXCGVSRGTAKACVDGLVDEERVVAVGGGR 158 (174)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 367999999999977993999999997949999999999999889779856788
No 104
>>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106)
Probab=87.43 E-value=0.66 Score=24.84 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=39.9
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 988-999999982999999999999999941798647986898137
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95)
+.+ ++.+|++..|++...|..++..|+-.|+|.+.+|.-+.++..
T Consensus 33 ~~LPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~ 78 (106)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGN 78 (106)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECSC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEEEEECC
T ss_conf 9984499999996989899999999999789079972877898179
No 105
>>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} (A:1-81)
Probab=87.28 E-value=1.3 Score=23.20 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=42.4
Q ss_pred CCCCCHH-HHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH------HHHHHHCCCCEEEEECC
Q ss_conf 8799989-99999985---889889999999829999999999999999------41798647986898137
Q gi|254780305|r 29 PEYTQCE-RVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDL------AGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 29 p~~~~~~-~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL------~G~i~~~pGg~v~l~~~ 90 (95)
+.+.+.. -.++++++ +.+|+++++|++.++++...|..+|-+|.- .|+-...-||.|++.+.
T Consensus 8 ~~~m~~~~l~~iiEAiLF~s~epvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~gi~l~~~~ggy~l~Tk 79 (81)
T 2z99_A 8 PAELDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTR 79 (81)
T ss_dssp -CCCCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEC
T ss_conf 444899999999999999717998999999884898789999999999987415550689995780599967
No 106
>>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77)
Probab=87.18 E-value=0.84 Score=24.26 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 988-99999998299999999999999994179864798689
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
+.+ +..+|++..|++...|..+|-.|+-.|+|.+.+-|+|.
T Consensus 34 ~~lPser~La~~~~VSr~tvr~Al~~L~~~Gli~~~g~G~~V 75 (77)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTVV 75 (77)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCEEEE
T ss_conf 868469999999796999999999999970776204851697
No 107
>>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114)
Probab=87.13 E-value=0.32 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999858-89889999999829999999999999999417986479
Q gi|254780305|r 35 ERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 35 ~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.+-.|+..|. .++..+-+|++..+++.+.++..+-.||=+|+|.+.+.
T Consensus 3 ~q~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~g~i~~~~~ 51 (87)
T 1lj9_A 3 GQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED 51 (87)
T ss_dssp THHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 9999999998389979999999989788589999999998899630679
No 108
>>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108)
Probab=87.00 E-value=0.22 Score=27.44 Aligned_cols=51 Identities=8% Similarity=0.176 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.+..+-.++..|.. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 3 lt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~i~r~~~ 54 (76)
T 2bv6_A 3 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRXEQVDLIKRERS 54 (76)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8999999999998079949999999979887379999999985898898006
No 109
>>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} (A:)
Probab=86.71 E-value=0.15 Score=28.26 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=49.6
Q ss_pred CCCCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 356887999899999998588-988999999982----99999999999999994179864798689
Q gi|254780305|r 25 ITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 25 ~~~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
........++.|..|+..|-. +|+.+-+|++.+ |+..+++...|-.||=+|+|.+...|+-.
T Consensus 26 ~~~~~~~Lt~~E~~vm~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~KG~v~r~~~gr~~ 92 (99)
T 2k4b_A 26 MNEVEFNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKF 92 (99)
T ss_dssp -----CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEE
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf 8650179999999999999907995899999985124487733499999999988987999529908
No 110
>>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* (A:1-88)
Probab=86.43 E-value=1.6 Score=22.80 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHH--CCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 998999999985--88988999999982-----9999999999999999417986479
Q gi|254780305|r 32 TQCERVRIKQSL--NNVPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 32 ~~~~~~~Il~~L--~~~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
....+..|++.| ...+.++++|.... .++.++|+.+|-.|+=.|+|.+.-.
T Consensus 20 ~T~~R~~il~~l~~~~~~~s~~ei~~~l~~~~~~is~aTVYR~L~~l~~~gli~~~~~ 77 (88)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (88)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEC
T ss_conf 2999999999998289999999999987510533231789999999988765467542
No 111
>>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118)
Probab=86.15 E-value=0.23 Score=27.26 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=49.6
Q ss_pred CCCCCCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5688799989999999858-89889999999829999999999999999417986479
Q gi|254780305|r 26 THYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 26 ~~~p~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
...+...+..+-.||..|. ..++++-+|+++.+++.+.++..+-.||=+|+|.+.+.
T Consensus 25 ~~~~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~~L~~~gli~r~~~ 82 (118)
T 3bja_A 25 AIEQYDISYVQFGVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQRXKRDGYVXTEKN 82 (118)
T ss_dssp HTGGGTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEC
T ss_conf 8878697999999999999869989999999868574618799999843115487645
No 112
>>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-74)
Probab=85.88 E-value=1.1 Score=23.60 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHH-C-CCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9998999999985-8-8988999999982----9999999999999999417986479868
Q gi|254780305|r 31 YTQCERVRIKQSL-N-NVPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 31 ~~~~~~~~Il~~L-~-~~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.....|.+|++.| . .+|+.+.+|.... ++..++|...|-.|+=+|+|.+.-.|+.
T Consensus 6 ~L~~~E~~iM~~iW~~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~k~gr~ 66 (74)
T 2g9w_A 6 RLGDLERAVXDHLWSRTEPQTVRQVHEALSARRDLAYTTVXAVLQRLAKKNLVLQIRDDRA 66 (74)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---C
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 7889999999999848999679999998501369838579999999996895002406983
No 113
>>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} (A:)
Probab=85.74 E-value=1.2 Score=23.49 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHH-CCCCCCHHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 79998999999985-88988999999----982999999999999999941798647986898
Q gi|254780305|r 30 EYTQCERVRIKQSL-NNVPIHIDDII----HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 30 ~~~~~~~~~Il~~L-~~~p~~iD~l~----~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
...+..|..|++.| ..+|+.+.+|. ...++..++|...|-.|+=+|.|.+.-.|+-.+
T Consensus 5 ~~Lt~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~rL~~Kg~i~~~~~g~~~~ 67 (82)
T 1p6r_A 5 PQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFV 67 (82)
T ss_dssp CCCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEE
T ss_conf 999999999999998179978999999860236972857999999999889868872598389
No 114
>>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127)
Probab=85.27 E-value=0.47 Score=25.60 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 799989999999858---8988999999982999999999999999941798647986
Q gi|254780305|r 30 EYTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
...+..+-.||..|. ..++++-+|++..+++.+.++..+-.||=+|+|.+.+...
T Consensus 11 ~glt~~~~~vL~~l~~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~gli~r~~~~~ 68 (101)
T 3jw4_A 11 LGLNSQQGRXIGYIYENQESGIIQKDLAQFFGRRGASITSXLQGLEKKGYIERRIPEN 68 (101)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC----
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 6979999999999980899997999999998978858999999999888963157778
No 115
>>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82)
Probab=85.08 E-value=0.83 Score=24.30 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+...+|++..|++...|..+|..|+-.|+|.+.+|.-+.++
T Consensus 38 ~~l~e~~La~~~~vSr~~vr~Al~~L~~~Gli~~~~~~G~~V~ 80 (82)
T 3ihu_A 38 QRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIR 80 (82)
T ss_dssp CEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEE
T ss_conf 9669999999989888999999999997898476358825997
No 116
>>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} (A:)
Probab=85.03 E-value=2.5 Score=21.73 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHH-------CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79998999999985-------88988999999982999999999999999941798
Q gi|254780305|r 30 EYTQCERVRIKQSL-------NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78 (95)
Q Consensus 30 ~~~~~~~~~Il~~L-------~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~ 78 (95)
.+.|+.-..||..| +..+.++-.|++++++|.+.+...|++|+=+|.+.
T Consensus 12 d~lDP~lvavL~~L~eA~~e~~G~~WSLaKlsKra~~PMS~LRR~LTqL~aaGl~~ 67 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPXSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 76798999999999998533799953399998770796799999999875178258
No 117
>>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} (A:)
Probab=84.78 E-value=0.99 Score=23.87 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 89889999999829999999999999999417986479-86898137
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE-GKVSLTMH 90 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG-g~v~l~~~ 90 (95)
..++++++|+++.|++...+..+|-.|--+|.|....| |=+.|+..
T Consensus 28 ~~~~s~~~IA~~~~i~~~~l~kil~~L~~aglv~s~~G~GG~~Lar~ 74 (149)
T 1ylf_A 28 SSLCTSDYXAESVNTNPVVIRKIXSYLKQAGFVYVNRGPGGAGLLKD 74 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCEECCC
T ss_conf 99775999999979499999999999976796886469988620378
No 118
>>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} (A:)
Probab=84.34 E-value=0.72 Score=24.61 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998588988999999982-99999999999999994179864
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
-.|+..|...+.++.+|.+.. |++...++..|-+||=.|.|.+.
T Consensus 25 ~~Il~~L~~g~~rf~el~r~l~giS~~~Ls~rLk~L~~~gli~r~ 69 (112)
T 1z7u_A 25 LSLXDELFQGTKRNGELXRALDGITQRVLTDRLREXEKDGLVHRE 69 (112)
T ss_dssp HHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999972998799999876220021699989899968861243
No 119
>>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} (A:17-85)
Probab=84.24 E-value=1.2 Score=23.49 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9899999998588-988999999982-----999999999999999941798647
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
.+.+..|++.|.. .+.++++|.++. .++.++|+..|-.|+=.|+|.+..
T Consensus 2 T~qR~~Il~~l~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~~~Gli~~~~ 56 (69)
T 3eyy_A 2 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 56 (69)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999972799899999999997588865488999999999749679841
No 120
>>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis} (A:)
Probab=83.54 E-value=1.1 Score=23.59 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHCCC--CCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCCC----EEEEEC
Q ss_conf 98999999985889--88999999982-----99999999999999994179864798----689813
Q gi|254780305|r 33 QCERVRIKQSLNNV--PIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPEG----KVSLTM 89 (95)
Q Consensus 33 ~~~~~~Il~~L~~~--p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pGg----~v~l~~ 89 (95)
...+..|++.|... +.++++|.... .++.++|+.+|-.|+=.|+|.+...+ +|.+..
T Consensus 10 T~qR~~Il~~l~~~~~~~t~~ei~~~l~~~~~~i~~aTVYR~L~~L~~~gli~~~~~~~~~~~y~~~~ 77 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRRCS 77 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEECC
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCEECCCCCC
T ss_conf 99999999999808999999999999986288768288999999998733567765379814342478
No 121
>>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82)
Probab=83.45 E-value=1.3 Score=23.33 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|++..|++...|..+|..|+-.|+|...+|.-+.++
T Consensus 32 ~~LPs~~~La~~~~vSr~tvr~Al~~L~~~gli~~~~~~G~~V~ 75 (82)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS 75 (82)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99936999999979699999999999997798899888335027
No 122
>>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} (A:133-222)
Probab=83.36 E-value=1.3 Score=23.30 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-|.+..+|+...|++...|+.+|-+|+=+|+|.....|++.+.
T Consensus 30 ~~lt~~~lA~~lg~sr~tvsr~l~~l~~~g~I~~~~r~~i~I~ 72 (90)
T 1ft9_A 30 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIP 72 (90)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECS
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf 4288999999849989999999999998898998799859988
No 123
>>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96)
Probab=83.11 E-value=1.5 Score=22.97 Aligned_cols=43 Identities=12% Similarity=0.063 Sum_probs=38.7
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|++..|++.+.|..+|-.|+-.|+|...+|.=+.++
T Consensus 51 ~~LPs~~~La~~~gvsr~tvr~Al~~L~~~Gli~~~~~~G~~V~ 94 (96)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVLXAEGLVEGRSGSGTYVR 94 (96)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEEC
T ss_conf 99917999999989599999999999998366061588268988
No 124
>>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} (A:1-136)
Probab=82.88 E-value=0.85 Score=24.23 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--HCCCCEEEEECC
Q ss_conf 88988999999982999999999999999941798--647986898137
Q gi|254780305|r 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC--HHPEGKVSLTMH 90 (95)
Q Consensus 44 ~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~--~~pGg~v~l~~~ 90 (95)
...++..++|+++.+++...|..++-.|-=+|.|. +.++|=|.|+..
T Consensus 25 ~~~~~~s~~IA~~~~i~~~~l~kil~~L~~~gli~s~~G~~GGy~L~~~ 73 (136)
T 3k69_A 25 RDSKVASRELAQSLHLNPVXIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73 (136)
T ss_dssp TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSC
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9987369999998890999999999999876754003567886424688
No 125
>>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135)
Probab=82.66 E-value=1.1 Score=23.63 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHH----CC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC----CCCEEEE
Q ss_conf 998999999985----88--98899999998299999999999999994179864----7986898
Q gi|254780305|r 32 TQCERVRIKQSL----NN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH----PEGKVSL 87 (95)
Q Consensus 32 ~~~~~~~Il~~L----~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~----pGg~v~l 87 (95)
++..+..||..| .. ..-++++|++.+|++.++|...|-.|+=+|+|.+. .||+++-
T Consensus 15 Ls~~~~~vl~~l~~~~~~g~~~pS~~~iA~~~g~s~~tV~~~l~~L~~~Gli~~~~~~~~~g~~~~ 80 (120)
T 2v79_A 15 LNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFE 80 (120)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 999999999999999876999989999999969899999999999998899799831572156887
No 126
>>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} (A:)
Probab=82.66 E-value=0.57 Score=25.15 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=46.1
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCC--EEEEE
Q ss_conf 99999998588-98899999998299999-999999999994179864798--68981
Q gi|254780305|r 35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAP-VVYLVLLELDLAGRLCHHPEG--KVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~-~v~~~LleLEL~G~i~~~pGg--~v~l~ 88 (95)
.+.+||+.|.. .|...-+|++..|++.. .|...|-.||=+|.|....|. +-+|+
T Consensus 12 ~~ekIl~~Lk~~G~~tA~~lAk~Lgltt~k~vn~~Ly~Le~~g~v~~~d~~Pp~W~Lt 69 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLT 69 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEEC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 8999999999659843999999949972677759999999756800179999964523
No 127
>>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157)
Probab=82.17 E-value=0.78 Score=24.45 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88799989999999858----898899999998299999999999999994179864798
Q gi|254780305|r 28 YPEYTQCERVRIKQSLN----NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~----~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.....+..+-.||..|. .+++.+-+|+.+++++.+.++.++-.||=+|+|.+.+..
T Consensus 63 ~~~~l~~~~~~vL~~l~~~~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~Gli~r~~~~ 122 (157)
T 2fbk_A 63 AASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 122 (157)
T ss_dssp HTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC--
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 886989999999999986289999699999999786875799999999866771231056
No 128
>>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} (A:1-86)
Probab=82.04 E-value=3 Score=21.26 Aligned_cols=57 Identities=26% Similarity=0.404 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHH--CCC-CCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC--CC--EEEEE
Q ss_conf 998999999985--889-88999999982-----999999999999999941798647--98--68981
Q gi|254780305|r 32 TQCERVRIKQSL--NNV-PIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP--EG--KVSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L--~~~-p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p--Gg--~v~l~ 88 (95)
....+..|++.| ... ..+.|+|.... .++.++|+..|-.|+=.|+|.+.- +| +|.+.
T Consensus 16 ~T~~R~~Il~~l~~~~~~h~sa~ei~~~l~~~~~~i~~~TVYR~L~~l~~~gli~~i~~~~~~~~Y~l~ 84 (86)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (86)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEC
T ss_conf 798999999999857999999999999999758788889999999999968938998848980799627
No 129
>>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} (A:)
Probab=80.79 E-value=4 Score=20.59 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=52.7
Q ss_pred CCCCCCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-----C-EEEEECCCCC
Q ss_conf 43568879998999999985---889889999999829999999999999999417986479-----8-6898137998
Q gi|254780305|r 24 NITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE-----G-KVSLTMHLPS 93 (95)
Q Consensus 24 ~~~~~p~~~~~~~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG-----g-~v~l~~~~~~ 93 (95)
+.+.....++.++..||+.+ |..-+-.-+|..+|+++..+|..+|=.||-++.|..... . +|-|....|+
T Consensus 10 e~a~k~~~l~~~E~lVY~~I~~aG~~GIW~kdir~ktnl~~~~v~K~LK~Lesk~lIK~VksV~~~~rK~YmL~~lePS 88 (91)
T 2dk5_A 10 QNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLSGP 88 (91)
T ss_dssp CCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEESSSCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCCCC
T ss_conf 9999874799999999999997065662499999873998899999999997268804432557887379987146589
No 130
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=80.73 E-value=1.9 Score=22.32 Aligned_cols=43 Identities=5% Similarity=-0.099 Sum_probs=38.6
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|++..|++...|..++-.|+-.|+|.+.+|.-+.++
T Consensus 31 ~~lpse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~ 74 (76)
T 3edp_A 31 XLXPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQ 74 (76)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEEC
T ss_conf 99928999999979499999999999997416130688669994
No 131
>>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=80.32 E-value=4.1 Score=20.55 Aligned_cols=59 Identities=10% Similarity=0.011 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 443568879998999999985---88988999999982999999999999999941798647
Q gi|254780305|r 23 INITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 23 ~~~~~~p~~~~~~~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
...+.....++.+|..||..+ |..-+-.-+|-.+|+|+...|..+|=.||-++.|....
T Consensus 26 ~e~a~k~~~L~~eE~lVY~~Ie~aG~~GIWtkdIr~ktnL~~~~v~K~LK~LEsk~lIKsVk 87 (95)
T 2yu3_A 26 SQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp SSSCCCCCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 88855432898899999999997276765599999880998899999999986247714102
No 132
>>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} (A:1-73)
Probab=79.86 E-value=1.6 Score=22.71 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 7999899999998588-9889999999----8299999999999999994179864798689
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIH----HTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~----~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
...+..|..|+++|-. +|..+-+|.. ..++..++|+..|-.|+=+|.|.+.-.|+..
T Consensus 6 ~~Lt~~E~~iM~~iW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~rL~~Kg~l~~~k~gr~~ 67 (73)
T 1okr_A 6 YEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIF 67 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCE
T ss_conf 99899999999999847996899999997513598451699999999988987888338816
No 133
>>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} (A:1-55)
Probab=79.68 E-value=0.065 Score=30.27 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588-98899999998299999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+|+..|.. ..+++.+|++.+|++.+.|...+-.||=.|.|++.
T Consensus 7 d~~IL~~L~~~~r~s~~ela~~lgis~~tv~~ri~~L~~~GiI~~~ 52 (55)
T 2cg4_A 7 DRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 52 (55)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCE
T ss_conf 7999999999998589999999999887758999999997112521
No 134
>>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A (A:1-101)
Probab=78.80 E-value=1.9 Score=22.33 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=39.2
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 988-99999998299999999999999994179864798689813
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+ ++-+|+++.|++..+|..+|-.|+-.|+|.+.+|.-+.+..
T Consensus 26 ~~LPse~~La~~~~VSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 70 (101)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGXFVSA 70 (101)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEECT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEECC
T ss_conf 999679999999789958999999999978927998898836789
No 135
>>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B (B:153-218)
Probab=78.79 E-value=1.9 Score=22.41 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588-98899999998299999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
...+++.+.. ..++..+++++.|+++.-...-|+.-|-.|+++|-
T Consensus 4 ~~~~~~~i~~~~~ita~e~A~~~giS~~lA~E~Ll~AE~~G~lCRD 49 (66)
T 3cuq_B 4 VASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD 49 (66)
T ss_dssp HHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999713899689999999698899999999999977978997
No 136
>>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* (A:137-220)
Probab=78.59 E-value=2.9 Score=21.33 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-|++..+|+..+|++...|+.+|-+|+=.|+|.....|.+.+.
T Consensus 30 ~~~t~~eLA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~~i~I~ 72 (84)
T 2fmy_A 30 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLK 72 (84)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEES
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf 2316999999979989999999999998899997699979988
No 137
>>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78)
Probab=77.66 E-value=2.4 Score=21.82 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 988-99999998299999999999999994179864798689813
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+ +..+|+++.|++.+.|..+|-.|+=.|+|.+.+|.-+.++.
T Consensus 26 ~~LPse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~~ 70 (78)
T 2di3_A 26 DHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGT 70 (78)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCC
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCC
T ss_conf 999109999999895999999999998860803416797775461
No 138
>>3ere_D Arginine repressor; X-RAY crystallography, arginine repressor protein; 2.50A {Mycobacterium tuberculosis H37RV} PDB: 3fhz_A* (D:1-87)
Probab=76.69 E-value=2.2 Score=22.02 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=41.5
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999998588-988999999982-----9999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+..|++.|.. .-..+.+|++.. +.+-++++.-|-+|+..++...+.|..|.+.
T Consensus 22 ~~~I~~~l~~~~~~t~~eL~~~L~~~gf~VSq~TIrRDL~~L~~~kv~~~~Gg~~~~~~ 80 (87)
T 3ere_D 22 QARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVV 80 (87)
T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHTTCCCCHHHHHHHHHTTTCEEEECTTSSEEEEEC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEC
T ss_conf 99999999858978999999999974976117888879998098898748997899973
No 139
>>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:181-225,A:375-471)
Probab=76.05 E-value=3.6 Score=20.85 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHH
Q ss_conf 9899999998588988-99999998299999999
Q gi|254780305|r 33 QCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~-~iD~l~~~tgl~~~~v~ 65 (95)
+.-+.+|++.|...|. .-|+|+++.|+++++|-
T Consensus 2 dekeerileilrenpwtphdeiarrlglsvseve 35 (142)
T 2csb_A 2 DEKEERILEILRENPWTPHDEIARRLGLSVSEVE 35 (142)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC
T ss_conf 7378999999960899972899998488533413
No 140
>>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77)
Probab=75.74 E-value=2.8 Score=21.43 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=39.3
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|++..+.+...|..+|..|+=.|+|.+.+|.-+.+.
T Consensus 29 ~~lps~~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~ 72 (77)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVN 72 (77)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEEC
T ss_conf 98906999999979299999999999998688154258841676
No 141
>>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} (A:159-230)
Probab=75.70 E-value=3.3 Score=21.02 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-|+.-.+|+..+|.+...|+.+|-+|+=.|.|. ..+|++.+.
T Consensus 28 ~~~t~~~lA~~lG~sr~tvsr~l~~l~~~gli~-~~~~~i~I~ 69 (72)
T 3iwz_A 28 LRVSRQELARLVGCSREMAGRVLKKLQADGLLH-ARGKTVVLY 69 (72)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEEE
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEEE
T ss_conf 177999999897988999999999999789899-649999998
No 142
>>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} (C:148-250)
Probab=74.27 E-value=3.1 Score=21.22 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-|++..+|+..+|++...|+.+|-+|+=.|+|....|...
T Consensus 29 ~~lt~~~LA~~lG~sr~tvsr~l~~L~~~giI~~~~~~i~ 68 (103)
T 3e6c_C 29 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKII 68 (103)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 8868999998979989999999999998898996499999
No 143
>>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} (A:120-231)
Probab=73.97 E-value=3.7 Score=20.76 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 988999999982999999999999999941798647986898
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
-|++..+|+..+|.+..+|+.+|-+|+=.|+|....|+.+-.
T Consensus 55 i~lt~~~lA~~~g~sr~tvsr~l~~L~~~G~I~~~~~~i~i~ 96 (112)
T 3e97_A 55 LPLGTQDIXARTSSSRETVSRVLKRLEAHNILEVSPRSVTLL 96 (112)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEES
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEEC
T ss_conf 155799999996999999999999999789899729999989
No 144
>>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ... (A:189-260)
Probab=73.85 E-value=2.7 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 988999999982999999999999999941798647986898
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
-|++-.+|+..+|.+...|+.+|-.|+-.|+|... +|++.+
T Consensus 28 ~~lt~~~lA~~lg~sr~tvsr~l~~l~~~GlI~~~-~~~i~I 68 (72)
T 3kcc_A 28 IKITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTIVV 68 (72)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEEEE
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEE
T ss_conf 36899999999799899999999999968979976-999999
No 145
>>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72)
Probab=73.69 E-value=4.7 Score=20.21 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++|+|++.+|++.+.++-
T Consensus 40 ~~lf~~~G~~~~si~~Ia~~agvs~~~iY~ 69 (72)
T 3bru_A 40 LEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (72)
T ss_dssp HHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998491506799999986889632332
No 146
>>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:)
Probab=72.99 E-value=3.9 Score=20.67 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9989999999858-89889999999829999999999999999417986479868
Q gi|254780305|r 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 32 ~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.++.+.+|+..|. .++..+-+|++..+++.+.++-.| .|.=+|+|....-|+.
T Consensus 25 sdp~Rl~IL~~L~~~~~~~v~ela~~l~~s~stvS~HL-kL~~aGli~~~r~G~~ 78 (99)
T 2zkz_A 25 AHPXRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHL-CKXRGKVLKRNRQGLE 78 (99)
T ss_dssp CSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHH-HHHBTTTBEEEEETTE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH-HHHHHCCEEEEEECCE
T ss_conf 89999999999972899469999999886988999999-9998298058998788
No 147
>>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:147-220)
Probab=72.95 E-value=3.2 Score=21.09 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-|++-++|+...|.+...|+.+|-+|+=+|.|.-..|+.+
T Consensus 22 i~~t~~~lA~~lg~sr~tvsr~L~~l~~~g~I~~~~~~i~ 61 (74)
T 3dv8_A 22 LKITHETIANHLGSHREVITRXLRYFQVEGLVKLSRGKIT 61 (74)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 6644999999979899999999999998898996299999
No 148
>>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* (A:154-278)
Probab=71.53 E-value=4.2 Score=20.47 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=36.1
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999998588--98899999998299999999999999994179864798689
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
...|++.|-. +.++|++|++.||+....|..+|-.| |.+....|+++-
T Consensus 42 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~DIi~tL~~l---~~l~~~~~~~~i 91 (125)
T 2pq8_A 42 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL---NMVKYWKGQHVI 91 (125)
T ss_dssp HHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT---TCEEC----CEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHC---CCEEEECCCEEE
T ss_conf 99999999856997219999987098776399999977---978997994899
No 149
>>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} (A:1-85)
Probab=71.31 E-value=6.9 Score=19.31 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++|+|++++|++.+.++-
T Consensus 53 ~~lf~~~G~~~~si~~IA~~agvs~~~~Y~ 82 (85)
T 3bni_A 53 ADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (85)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998493307799999982889652012
No 150
>>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* (A:148-227)
Probab=71.31 E-value=3.6 Score=20.82 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-|++..+|+..+|.+...|+.+|-+|+=.|+|....|..+
T Consensus 29 ~~~t~~~la~~lg~sr~tvsr~L~~l~~~glI~~~~~~i~ 68 (80)
T 3d0s_A 29 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVL 68 (80)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 4789999999979999999999999998898996399999
No 151
>>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli BL21} (A:)
Probab=71.29 E-value=6.7 Score=19.40 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHC--C-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 989999999858--8-988999999982-----9999999999999999417986479
Q gi|254780305|r 33 QCERVRIKQSLN--N-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 33 ~~~~~~Il~~L~--~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
...+..|++.|- . .+.++++|.+.. .++.++|+..|-.|+=.|+|.+..+
T Consensus 16 T~~R~~Il~~l~~~~~~h~s~~~i~~~l~~~~~~is~aTVYR~L~~l~~~gii~~~~~ 73 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999999994899998899999998850899888999999999998897799973
No 152
>>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} (A:118-202)
Probab=71.27 E-value=3.2 Score=21.15 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 98899999998299999999999999994179864798689
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
-|++-.+|+..+|++...|+.+|-.|+=+|+|....|..+-
T Consensus 28 ~~lt~~~lA~~lg~sr~tvsr~L~~L~~~glI~~~~~~i~I 68 (85)
T 2zcw_A 28 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQL 68 (85)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 38989999988798899999999999988999965999998
No 153
>>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} (A:1-116)
Probab=68.64 E-value=4.8 Score=20.19 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99899999998588988999999982999999999999999941798647986
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
....-.+||.++ +.-.++=+|++.+++|...|+++.-+|+=.|++.+--|=.
T Consensus 41 g~r~VE~iL~al-~~~~~~weiv~ls~lPlPiVaaI~~~L~~eGlvk~~~gi~ 92 (116)
T 2qm3_A 41 YERSVENVLSAV-LASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFEDGVK 92 (116)
T ss_dssp CHHHHHHHHHHH-HHCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSSSSE
T ss_pred HHHHHHHHHHHH-HCCCCHHEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 777878999998-4346620120031565567999999999830477641111
No 154
>>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} (A:152-232)
Probab=68.59 E-value=4.5 Score=20.32 Aligned_cols=40 Identities=5% Similarity=-0.005 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-|++-.+|+..+|++...|+.+|-+|+=.|+|....|..+
T Consensus 28 ~~lt~~~lA~~lG~sr~tvsr~L~~l~~~g~I~~~~~~i~ 67 (81)
T 2gau_A 28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIK 67 (81)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 2878999998979999999999999998896997099999
No 155
>>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} (A:1-74)
Probab=68.34 E-value=8.2 Score=18.91 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~~gvs~~t~Y~ 47 (74)
T 2d6y_A 18 VAEFARHGIAGARIDRIAAEARANKQLIYA 47 (74)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997491407799999985919889967
No 156
>3bz6_A A Conserved Protein Of Unknown Function {Pseudomonas Syringae Pv. Tomato Str. Dc3000} (A:)
Probab=68.33 E-value=7.9 Score=19.02 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHH--------CCCCCCHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 79998999999985--------88988999999982----------999999999999999941798647986898
Q gi|254780305|r 30 EYTQCERVRIKQSL--------NNVPIHIDDIIHHT----------GIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 30 ~~~~~~~~~Il~~L--------~~~p~~iD~l~~~t----------gl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
...++.+.+|+.+| ...|.+++.|...| .++-++|..+|=.|.-+|.|....|+++.-
T Consensus 20 ~~Ls~~e~RVLG~LiEK~~TTPd~YPLtLNaL~~aCNQKtnRePVm~l~e~eV~~ald~L~~~~Lv~~~~gsRv~k 95 (183)
T 3bz6_A 20 LQLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVXNLTQGQVGQSLRALEGRGLTRLVXGSRADR 95 (183)
T ss_dssp CCBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECCSSCCE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 3458888999988764220377767501888887741002335212588789999999998520100024663126
No 157
>>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} (A:136-207)
Probab=68.17 E-value=4.9 Score=20.14 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-|++-.+|+..+|.+...|+.+|-+|+=.|+|....|..+
T Consensus 28 ~~~t~~elA~~lg~sr~tvsr~l~~l~~~gli~~~~~~i~ 67 (72)
T 2oz6_A 28 IKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMV 67 (72)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 0778999999979999999999999998898997699999
No 158
>>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} (A:)
Probab=67.58 E-value=7.2 Score=19.21 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHHHH-C-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985-8-89889999999829999999999999999417986
Q gi|254780305|r 35 ERVRIKQSL-N-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 35 ~~~~Il~~L-~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
+...|+++| . ...+.-|+|+..++++...+..+|..|.-.|.|..
T Consensus 19 ~~~~I~~~L~~~~~~l~e~~la~~~~i~~k~vR~iL~~L~~~~lv~~ 65 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999998698878999998959999999999999998697240
No 159
>>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} (A:152-280)
Probab=67.37 E-value=5.1 Score=20.05 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=34.3
Q ss_pred HHHHHHHHCC--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998588--------9889999999829999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLNN--------VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~~--------~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...|++.|-. +.++|++|+..||+....|..+|-.| |.+....|.++
T Consensus 42 ~~~i~~~L~~~~~~~~~~~~isi~dis~~Tgi~~~DIi~tL~~l---~~l~~~~~~~~ 96 (129)
T 2ou2_A 42 SQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYL---NLINYYKGQYI 96 (129)
T ss_dssp HHHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHT---TCCCBCSSSBB
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHC---CCEEEECCEEE
T ss_conf 99999999972545577775809999887399899999999977---97899799489
No 160
>>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A* (A:)
Probab=66.61 E-value=4.4 Score=20.37 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998588988999999982--------9999999999999999417986
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~ 79 (95)
+-.||..|...|.|--+|.+.. .++.+.++.+|-.||-+|+|..
T Consensus 14 ~~~IL~~L~~~p~~Gyei~~~i~~~~~~~~~is~g~iY~~L~rLe~~G~i~~ 65 (116)
T 3f8b_A 14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISS 65 (116)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 9999999871898899999999998399316897754999999997897689
No 161
>>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} (A:156-278)
Probab=65.90 E-value=5.4 Score=19.91 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=36.4
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999998588--98899999998299999999999999994179864798689
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
...|++.|-. +.++|++|++.||+....|..+|-.| |.+....|+++-
T Consensus 42 ~~~i~~~L~~~~~~isi~dis~~T~i~~~DIi~tL~~l---~~l~~~~~~~~i 91 (123)
T 1fy7_A 42 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL---NILRYYKGQHII 91 (123)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHH---TCEEEETTEEEE
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHH---CHHHHHCCCEEE
T ss_conf 99999999860671679997643066479899999883---777633686799
No 162
>>3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583} (A:)
Probab=65.57 E-value=6.3 Score=19.53 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998588988999999982------9999999999999999417986
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHT------GIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~t------gl~~~~v~~~LleLEL~G~i~~ 79 (95)
-+--||..|...|.|-=+|.+.. .++.+.++.+|-.||-+|.|..
T Consensus 14 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~i~~g~lY~~L~rLe~~g~I~~ 64 (116)
T 3hhh_A 14 LEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIA 64 (116)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 999999998439988999999999838978897664999999997796799
No 163
>>1b4a_A Arginine repressor; helix turn helix; 2.50A {Bacillus stearothermophilus} (A:1-68)
Probab=63.75 E-value=2.5 Score=21.68 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCCCE-EEE
Q ss_conf 9999998588-988999999982-----999999999999999941798647986-898
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPEGK-VSL 87 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pGg~-v~l 87 (95)
+..|++.|.. .-...++|++.. ..+-++|+..|-+|+..+.. +.-||. |++
T Consensus 7 ~~~I~~ll~~~~~~tq~eL~~~L~~~G~~vSqaTisRDL~eL~~~ki~-~~~G~~~y~~ 64 (68)
T 1b4a_A 7 HIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVP-MANGRYKYSL 64 (68)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCEEEE-CSSSCEEEEC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEE-CCCCCEEEEC
T ss_conf 999999998589778999999999859752389999999981554767-5899489953
No 164
>>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae} (A:1-85)
Probab=63.53 E-value=8.6 Score=18.82 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99899999998588---988999999982-----99999999999999994179864798
Q gi|254780305|r 32 TQCERVRIKQSLNN---VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 32 ~~~~~~~Il~~L~~---~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
....+..|++.|-. .+.++++|.... .++.++|+..|-.|+=.|+|.+..++
T Consensus 15 ~T~~R~~il~~l~~~~~~~~sa~~i~~~l~~~~~~is~~TVYR~L~~l~~~g~v~~~~~~ 74 (85)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFE 74 (85)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECG
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 898999999999828999999999999998608885789999999999967848999608
No 165
>>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} (A:159-284)
Probab=63.01 E-value=9.1 Score=18.67 Aligned_cols=47 Identities=23% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999858---89889999999829999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...|++.|. .+.++|++|++.||+....|..+|-.| |.+...-|+++
T Consensus 42 ~~~i~~~L~~~~~~~~si~~is~~Tgi~~~DIi~tL~~l---~~l~~~~~~~~ 91 (126)
T 2ozu_A 42 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL---RMLDFRSDQFV 91 (126)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT---TCC--------
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHC---CCEEEECCCEE
T ss_conf 999999998668994619999998699999999999977---97899799089
No 166
>>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82)
Probab=62.92 E-value=8.3 Score=18.88 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=40.4
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999858-898899999998299999999999999994179864
Q gi|254780305|r 35 ERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 35 ~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.+-+|+..|= ..++.+-+|++..|++.-.|-..++.|==+|.++|.
T Consensus 3 seirIY~LLlek~~m~i~eI~keLglSeR~VRe~v~~L~r~GllkRe 49 (64)
T 1sfx_A 3 SDVRIYSLLLERGGXRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 49 (64)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 99999999980488879999999756701899999999959997987
No 167
>>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} (A:1-58)
Probab=62.87 E-value=11 Score=18.18 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++.+|++.+.++.
T Consensus 26 ~~lf~~~G~~~~ti~~Ia~~agvs~~~lY~ 55 (58)
T 2oi8_A 26 WEQIATAGASALSLNAIAKRXGXSGPALYR 55 (58)
T ss_dssp HHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998294538899999996887204867
No 168
>>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} (A:)
Probab=62.56 E-value=7.9 Score=19.00 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH--------HHHHHHHHHH
Q ss_conf 8999999982999999999999--------9999417986
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL--------ELDLAGRLCH 79 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll--------eLEL~G~i~~ 79 (95)
+.+.+|++.+|++.++|+.+|- --|...+|..
T Consensus 1 vTi~dIA~~agvS~~TVSrvln~~~~~~~vs~~tr~rI~~ 40 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMA 40 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 9899999998939999999977989878649999999999
No 169
>>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} (A:107-238)
Probab=62.11 E-value=7.3 Score=19.19 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 988999999982999-99999999999994179864798689
Q gi|254780305|r 46 VPIHIDDIIHHTGIE-APVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~-~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
-|++-.+|+..+|++ ...|+.+|-+|+=.|+|....|+.+-
T Consensus 62 i~lt~~elA~~~G~s~retvsr~l~~l~~~G~I~~~~~~i~I 103 (132)
T 2bgc_A 62 DNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 103 (132)
T ss_dssp SCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 576799999995898277999999999988989963999999
No 170
>>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:133-198)
Probab=62.03 E-value=12 Score=18.09 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=41.5
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999985---8898899999998299999999999999994179864798689
Q gi|254780305|r 37 VRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 37 ~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
++|...+ |.+|-.+-+++..+|++-..+...|--|==.|.+.+...++|-
T Consensus 12 ~~i~~~~~~ag~~PP~vrdl~~~l~~~e~~~r~ll~~l~~~G~lvkI~~D~y~ 64 (66)
T 1lva_A 12 KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 64 (66)
T ss_dssp HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEE
T ss_conf 99999998679999889999988397999999999999977986882798899
No 171
>>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} (A:90-239)
Probab=61.35 E-value=12 Score=18.02 Aligned_cols=41 Identities=5% Similarity=-0.091 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 79998999999985889889999999829999999999999
Q gi|254780305|r 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
..+++.+++|+...-.+..+..+|++..|++.++|...+..
T Consensus 97 ~~L~~~~r~vi~l~~~~g~s~~EIA~~lgis~~tV~~~l~r 137 (150)
T 1rp3_A 97 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAK 137 (150)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 37999999999999269999999999989599999999999
No 172
>>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP} (A:14-115)
Probab=60.40 E-value=11 Score=18.19 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998588988999999982-------99999999999999994179864
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHT-------GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~t-------gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
-+-.||..|...|.|-=+|.+.. .++.+.++.+|-.||=+|.|...
T Consensus 10 ~~~~IL~~L~~~p~~Gyei~~~l~~~~g~~~i~~g~iY~~L~~Le~~GlI~~~ 62 (102)
T 2dql_A 10 AICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGY 62 (102)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 99999999815997899999999997795057987369999999988986999
No 173
>>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus} (A:111-195)
Probab=59.75 E-value=6.3 Score=19.54 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-|+.-.+|+..+|.+...|+.+|-.|+=.|+|....+..+
T Consensus 28 ~~~t~~~lA~~~g~sr~tvsr~L~~l~~~giI~~~~~~i~ 67 (85)
T 2zdb_A 28 VTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVY 67 (85)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 3888999998879979999999999998898997099999
No 174
>>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} (A:)
Probab=59.24 E-value=2.8 Score=21.47 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=39.9
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHCC
Q ss_conf 899999998588-98899999998299999-9999999999941798647
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAP-VVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~-~v~~~LleLEL~G~i~~~p 81 (95)
.-+.+|++.|.. .+...=.|++..|+..+ .|..+|..||=+|.|.+..
T Consensus 10 d~eekI~~~L~~~g~~~Al~iAk~LGl~~akeVN~~LY~L~k~g~l~~~~ 59 (72)
T 3eyi_A 10 QREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDE 59 (72)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 76999999999669925889999858111777568999999742777668
No 175
>>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} (A:15-79)
Probab=59.01 E-value=12 Score=18.07 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=25.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8999999982999999999999999941
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLELDLAG 75 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~LleLEL~G 75 (95)
-+.++|+.++|++..+|...+-.|.=+|
T Consensus 38 Ps~~~La~~m~~s~~~i~~~l~~Li~kG 65 (65)
T 2vn2_A 38 PTPAELAERMTVSAAECMEMVRRLLQKG 65 (65)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 9999999896979999999999999889
No 176
>>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:)
Probab=58.95 E-value=13 Score=17.79 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 879998999999985-88988999999982999999999999999941798647986
Q gi|254780305|r 29 PEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 29 p~~~~~~~~~Il~~L-~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
+...+..+..+...+ -.+++.-.+|+++.|++.++|+..|-+++=.|.|+..-.|.
T Consensus 11 ~~~~~~~~~~~~~~~yy~e~~tq~eIA~~LgiSr~~V~r~L~~a~~~GlV~i~i~~~ 67 (200)
T 2p8t_A 11 AYPEYTVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRGH 67 (200)
T ss_dssp ---CCCHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CE
T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 999889899999999834885589999880982789999999997689689617862
No 177
>>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} (A:1-66)
Probab=58.32 E-value=12 Score=17.95 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
..++...|++-+++++|++.+|++.+.++-
T Consensus 21 ~~l~~~~G~~~~s~~~Ia~~~gvs~~~iY~ 50 (66)
T 2ras_A 21 QAIVEERGGAGLTLSELAARAGISQANLSR 50 (66)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997590206799999986848756878
No 178
>>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} (A:)
Probab=58.06 E-value=7.5 Score=19.11 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998588988999999982--------99999999999999994179864
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
-.-.||..|...|.+--+|.+.. .++.+.|+.+|-.||=+|+|...
T Consensus 42 l~~~IL~~L~~~p~~GyeL~~~i~~~~~~~~~~s~gtiY~~L~rLe~~GlI~~~ 95 (145)
T 1xma_A 42 VDTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp HHHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEE
T ss_conf 999999997508988999999999974994257877432999999978973888
No 179
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=57.96 E-value=9.2 Score=18.65 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 87999899999998588988999999982999999999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
|+-++.++.+....|=....++-+|++..|++.++++..|-
T Consensus 3 p~klt~eq~~~a~~l~~~G~s~~~iA~~~gVSr~TiYr~l~ 43 (52)
T 1jko_C 3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCSSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 98699999999999998799899999998979999999845
No 180
>>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} (A:1-50)
Probab=57.75 E-value=13 Score=17.76 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++.+|++.+.++-
T Consensus 18 ~~l~~~~G~~~~t~~~Ia~~agisk~~~y~ 47 (50)
T 2g7s_A 18 RTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (50)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997392528899999986909999957
No 181
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:1-60)
Probab=57.57 E-value=9.3 Score=18.61 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89889999999829999999999999
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
.....+.+|++.+|++.++|+.+|-.
T Consensus 7 ~~~~tl~diA~~aGvS~sTVSr~ln~ 32 (60)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (60)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99762999999988499999998589
No 182
>>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} (A:1-73)
Probab=57.45 E-value=14 Score=17.65 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 79998999999985889889999999829999999999999
Q gi|254780305|r 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
..+.+.++.|+...-.+..+..+|++.+|++.+.|...+..
T Consensus 21 ~~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~~v~~~l~r 61 (73)
T 1s7o_A 21 ALLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKR 61 (73)
T ss_dssp GGSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 43999999999999997312999999989799999999999
No 183
>>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:1-46)
Probab=57.18 E-value=14 Score=17.62 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9998588988999999982999999999999
Q gi|254780305|r 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 39 Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
|-+.+++.++++++|++.+|++.+-++...-
T Consensus 12 I~~h~~~~~lsl~~lA~~~~~S~~yl~r~Fk 42 (46)
T 2k9s_A 12 ISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (46)
T ss_dssp HHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9975689997999999998929999999999
No 184
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:1-46)
Probab=57.15 E-value=11 Score=18.20 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999982999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+.+.+|++.+|++.++|+.+|-
T Consensus 3 ~ti~dIA~~agvS~~TVSr~ln 24 (46)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVN 24 (46)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 6899999998969999999978
No 185
>>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:)
Probab=56.84 E-value=12 Score=18.08 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 879998999999985889889999999829999999999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
....|..+..|.++|-..-.++-.|++..|++.+.+..+|..
T Consensus 4 ~~~~dWh~adI~AaL~krG~sLa~lsr~~gls~stl~nal~r 45 (74)
T 1neq_A 4 EKARDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp SSSSSCCHHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 656888999999999996887999999909987899998837
No 186
>>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:)
Probab=56.83 E-value=1.7 Score=22.59 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 988-999999982999999999999999941798647986898137
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95)
+.+ +..+|++..|++...|..+|..|+=.|+|...+|.-+.+...
T Consensus 33 ~~LPs~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~V~~~ 78 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN 78 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCC
T ss_conf 9986899999997979999999999999889679974877998779
No 187
>>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} (A:1-95)
Probab=56.59 E-value=15 Score=17.56 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++-.
T Consensus 58 ~~l~~~~G~~~~ti~~Ia~~agvs~~slY~~ 88 (95)
T 2of7_A 58 YGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (95)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999980955278999999979399899998
No 188
>>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} (A:1-85)
Probab=56.57 E-value=13 Score=17.77 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++.+++++|++..|++.+.++-
T Consensus 33 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 62 (85)
T 2zb9_A 33 GELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (85)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998592406899999985636484127
No 189
>>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} (A:)
Probab=56.40 E-value=13 Score=17.88 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999858-898899999998299999999999999994179864
Q gi|254780305|r 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
|=+++- +.-...++|.+..+.|..-|-++|-.|+..|+|+|.
T Consensus 7 vRD~iAL~G~~da~qLS~ql~~P~plv~AMLerL~aMGK~eri 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 9999997163109999988769878999999999970343451
No 190
>>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81)
Probab=55.83 E-value=15 Score=17.49 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++..
T Consensus 26 ~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~ 56 (81)
T 2qtq_A 26 SNIXREGDVVDISLSELSLRSGLNSALVKYY 56 (81)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999971966378999999979098899777
No 191
>>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} (A:1-88)
Probab=55.63 E-value=11 Score=18.27 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+.+++|++++|++.+.++-
T Consensus 35 ~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~ 64 (88)
T 3fiw_A 35 LDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (88)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998593536599999998938869999
No 192
>>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} (A:1-50)
Probab=54.75 E-value=14 Score=17.60 Aligned_cols=30 Identities=10% Similarity=0.351 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 18 ~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~ 47 (50)
T 2o7t_A 18 CNLYRTHHHDSLTXENIAEQAGVGVATLYR 47 (50)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHC
T ss_conf 999998591407799999985889442122
No 193
>>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} (A:1-72)
Probab=53.38 E-value=16 Score=17.35 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++..
T Consensus 18 ~~~~~~~G~~~~t~~~ia~~~gvs~~~~Y~~ 48 (72)
T 3dew_A 18 TELFAQKGFYGVSIRELAQAAGASISXISYH 48 (72)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999985924177999999969399999666
No 194
>>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51)
Probab=52.74 E-value=17 Score=17.21 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 19 ~~lf~~~G~~~~s~~~Ia~~aGvs~g~iY 47 (51)
T 3cdl_A 19 IAEFGDRGFEITSXDRIAARAEVSKRTVY 47 (51)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 99999749251889999998688966145
No 195
>>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} (A:179-227)
Probab=52.19 E-value=13 Score=17.84 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999829999999999999999417986479868981
Q gi|254780305|r 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 49 ~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+-.+|+...|.+...|+.+|-.|+=.|+|....|. +.+.
T Consensus 2 tq~elA~~lG~sr~tvsR~l~~l~~~glI~~~~~~-I~I~ 40 (49)
T 3dkw_A 2 AKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGRE-ISIL 40 (49)
T ss_dssp CTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSC-EEES
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCE-EEEC
T ss_conf 89999888699899999999999978979971999-9983
No 196
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80)
Probab=51.70 E-value=18 Score=17.12 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=26.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
..++..-|++-+++++|+.++|++.+.++-
T Consensus 21 ~~l~~~~G~~~~t~~~Ia~~~gvs~~~~Y~ 50 (80)
T 3b81_A 21 WDIFIANGYENTTLAFIINKLGISKGALYH 50 (80)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997490407899999995989889987
No 197
>>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=51.31 E-value=18 Score=17.08 Aligned_cols=42 Identities=5% Similarity=-0.088 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 879998999999985889889999999829999999999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
-..+.+.++.|+..--..-.+.++|++..|++.+.|...+..
T Consensus 13 l~~L~~~~r~i~~l~~~~~~s~~eIA~~l~is~~tV~~~l~r 54 (70)
T 2o8x_A 13 IADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp TTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 987999999998999995847999999979899999999999
No 198
>>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} (A:)
Probab=51.21 E-value=18 Score=17.07 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 21 ~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 49 (219)
T 2w53_A 21 EACFHEHGVARTTLEMIGARAGYTRGAVY 49 (219)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 99999859240879999998688844087
No 199
>>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} (A:1-89)
Probab=50.75 E-value=17 Score=17.23 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588988999999982--------99999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+-.||..|...|.|=-+|.+.. .++.+.++.+|-.||=+|.|...
T Consensus 4 ~~~IL~~L~~~p~~Gyei~~~i~~~~~~~~~~~~g~iY~~L~~L~~~GlI~~~ 56 (89)
T 1yg2_A 4 PHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCV 56 (89)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 99999998718999999999999983884179978199999999977974788
No 200
>>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} (A:1-61)
Probab=50.60 E-value=18 Score=17.02 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=37.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999985889889999999829999999999999999417986479868
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
+|...++.+|.-+-+|+..+|.+-..+-..|-.+-=.|.|...--.+|
T Consensus 11 ~i~p~~~~~P~wVRDlA~~~g~~E~~~R~llrk~a~~G~i~~Vv~Dry 58 (61)
T 2pjp_A 11 KAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRY 58 (61)
T ss_dssp HHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEE
T ss_conf 999997469998999999979299999999999998891799459888
No 201
>>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} (A:)
Probab=50.52 E-value=3.8 Score=20.71 Aligned_cols=50 Identities=6% Similarity=0.123 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHCC----CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9899999998588----988999999982-9999999999999999417986479
Q gi|254780305|r 33 QCERVRIKQSLNN----VPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 33 ~~~~~~Il~~L~~----~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
+.-+.+|++.+.. +.+++++|+.+. +++...+-.+|-+|.=.|.|-..-.
T Consensus 206 ~~~~~~Il~~i~~~~~~~G~~~~~I~~~l~~~~~~~i~~al~~L~~~G~IY~T~D 260 (270)
T 2pi2_A 206 TVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVD 260 (270)
T ss_dssp -------------------------------------------------------
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCC
T ss_conf 7899999988623687688189999998349999999999999975988981157
No 202
>>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A (A:)
Probab=50.41 E-value=19 Score=17.00 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99899999998588-988999999982999999999999999
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELD 72 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLE 72 (95)
...-+..|++.|-. .|.++.+|+..+|++..++...|-+|.
T Consensus 20 ~~~~~~~ll~~la~G~pvt~~eLA~~~~~~~~~v~~~L~~~~ 61 (220)
T 3f2g_A 20 TADLLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 555999999999669999989998760999999999998578
No 203
>>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} (A:)
Probab=49.93 E-value=10 Score=18.40 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8988999999982999999999999999941798647
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
+.-...++|.+..+.|..-|-++|-.|+..|+|+|.-
T Consensus 14 ~G~~da~qLS~qL~tP~plV~AMLerL~aMGKierie 50 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 0740099999886798789999999998735767603
No 204
>>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:)
Probab=49.92 E-value=19 Score=16.96 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 22 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (200)
T 2hyj_A 22 AEIASEEGLDGITIGRLAEELEMSKSGVHK 51 (200)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997394416799999987838012765
No 205
>>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} (A:1-85)
Probab=49.79 E-value=19 Score=16.95 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=36.7
Q ss_pred HHHHHH---HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHH------HHHHHHCCCCEEEEECC
Q ss_conf 999998---5889889999999829--999999999999999------41798647986898137
Q gi|254780305|r 37 VRIKQS---LNNVPIHIDDIIHHTG--IEAPVVYLVLLELDL------AGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 37 ~~Il~~---L~~~p~~iD~l~~~tg--l~~~~v~~~LleLEL------~G~i~~~pGg~v~l~~~ 90 (95)
.+++++ .+.+|+++++|++..+ ++..++..+|-+|.- .|.-...-||.|++...
T Consensus 9 ~~~iEAlLf~~gepls~~~L~~~l~~~i~~~~i~~~l~~L~~~y~~~~rgi~l~~~~~gy~l~t~ 73 (85)
T 1t6s_A 9 LRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTE 73 (85)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEC
T ss_conf 99999999763898899999998665899999999999999986515664699983785689977
No 206
>>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} (A:1-68)
Probab=49.47 E-value=19 Score=16.92 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++-.
T Consensus 21 ~~l~~~~G~~~~ti~~Ia~~~gvs~~~~Y~~ 51 (68)
T 2i10_A 21 XELFWRQGYEGTSITDLTKALGINPPSLYAA 51 (68)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999986915188999999858785568861
No 207
>>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} (A:)
Probab=49.31 E-value=18 Score=17.10 Aligned_cols=49 Identities=8% Similarity=-0.086 Sum_probs=41.5
Q ss_pred HHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999998588--9889999999829999999999999999417986479868
Q gi|254780305|r 37 VRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 37 ~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.-|++.|.. +|+..-.|+..++++-..+...+=.|+=.|.|..-.+||.
T Consensus 8 eIi~~IL~~~~~~i~rt~L~~~~nLs~~~~~~~l~~L~~~GLI~~~~~~y~ 58 (95)
T 1r7j_A 8 EIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYM 58 (95)
T ss_dssp HHHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 999999999866998648899809999999999999998889252698479
No 208
>>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... (B:1-71)
Probab=48.76 E-value=20 Score=16.85 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=27.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
..++..-|++-+++++|++.+|++.+.++.
T Consensus 12 ~~l~~~~G~~~~t~~~Ia~~agis~~t~y~ 41 (71)
T 3bqz_B 12 KELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (71)
T ss_dssp HHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997591517799999987909888814
No 209
>>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} (A:)
Probab=48.51 E-value=20 Score=16.83 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 33 ~~l~~~~G~~~~si~~IA~~agvs~~t~Y~ 62 (231)
T 2zcx_A 33 RELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997095407799999996959899978
No 210
>>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} (A:)
Probab=48.37 E-value=20 Score=16.82 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 29 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 58 (243)
T 2g7l_A 29 VALXRAEGLEKVTXRRLAQELDTGPASLYV 58 (243)
T ss_dssp HHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999997295207899999870878665121
No 211
>>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} (A:117-194)
Probab=48.24 E-value=20 Score=16.81 Aligned_cols=39 Identities=5% Similarity=-0.124 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 998999999985889889999999829999999999999
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
+.+.++.|+..--..-.+..+|++.+|++.+.|...+..
T Consensus 25 L~~~~r~i~~l~~~~~~s~~eIA~~lgis~~tv~~~l~r 63 (78)
T 1or7_A 25 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 63 (78)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999980979999999989499999999999
No 212
>>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} (A:)
Probab=48.18 E-value=20 Score=16.80 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~ 47 (206)
T 1vi0_A 18 VEVIAENGYHQSQVSKIAKQAGVADGTIYL 47 (206)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998393407799999995988757986
No 213
>>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} (A:)
Probab=47.97 E-value=20 Score=16.79 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 48 (203)
T 2np5_A 19 FDVAAESGLEGASVREVAKRAGVSIGAVQH 48 (203)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCHHHCC
T ss_conf 999997092307799999986899632200
No 214
>>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* (A:)
Probab=47.82 E-value=20 Score=16.77 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 14 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~ 43 (185)
T 2yve_A 14 IDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHCCCC
T ss_conf 999998592517899999986837402258
No 215
>>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} (A:42-232)
Probab=47.40 E-value=16 Score=17.39 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8899999998299999999999999994179864798689
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
+...++|+..+|.+...++.+|-+|+=+|.|....+..+-
T Consensus 145 ~~~~~~la~~l~~sr~~v~r~l~~L~~~g~i~~~~~~i~i 184 (191)
T 1zyb_A 145 KVKXDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILI 184 (191)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 7699999989798999999999999988989972999998
No 216
>>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} (A:1-73)
Probab=47.35 E-value=21 Score=16.73 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++..
T Consensus 22 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~ 52 (73)
T 2fq4_A 22 YELLLESGFKAVTVDKIAERAKVSKATIYKW 52 (73)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC
T ss_conf 9999984924077999999969288775103
No 217
>>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} (A:)
Probab=46.75 E-value=21 Score=16.68 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 45 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 74 (221)
T 3g7r_A 45 TRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp HHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998491507499999987899684110
No 218
>>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} (A:)
Probab=46.73 E-value=21 Score=16.68 Aligned_cols=30 Identities=3% Similarity=0.091 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 22 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (198)
T 3cjd_A 22 EAQIEAEGLASLRARELARQADCAVGAIYT 51 (198)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997493525799999997875458999
No 219
>>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} (A:)
Probab=46.57 E-value=21 Score=16.66 Aligned_cols=30 Identities=7% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 12 ~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 41 (209)
T 3bqy_A 12 LDLLNESGLDTLTXRRLAQAXDVQAGALYR 41 (209)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997396635399999987909979999
No 220
>>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:)
Probab=46.50 E-value=22 Score=16.66 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++.+|++.+.++..
T Consensus 17 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~y 47 (197)
T 2gen_A 17 LACFSEHGVDATTIEXIRDRSGASIGSLYHH 47 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 9999986935177999999848496413451
No 221
>>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} (A:)
Probab=46.16 E-value=22 Score=16.63 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 20 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 20 AAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999997195528899999986899670310
No 222
>>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:1-82)
Probab=46.14 E-value=22 Score=16.62 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|+++.|++.+.++-
T Consensus 22 ~~l~~~~G~~~~ti~~ia~~agvs~~t~Y~ 51 (82)
T 1rkt_A 22 KTVFKRKGFELTTXKDVVEESGFSRGGVYL 51 (82)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHC
T ss_conf 999998192408899999985899652101
No 223
>>2pbx_A Hemagglutinin/protease regulatory protein; quorum sensing, transcription factor, TETR family, DNA-binding, transcription regulation; 2.20A {Vibrio cholerae 2740-80} (A:)
Probab=46.14 E-value=22 Score=16.62 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 27 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 56 (203)
T 2pbx_A 27 LEVFAKRGIGRGGHADIAEIAQVSVATVFN 56 (203)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 999987192407799999883998542232
No 224
>>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} (A:)
Probab=45.94 E-value=22 Score=16.61 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++..
T Consensus 25 ~~l~~~~G~~~~si~~IA~~agvs~~tiY~~ 55 (221)
T 3c2b_A 25 LRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 9999985925178999999858980205266
No 225
>>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:)
Probab=45.76 E-value=22 Score=16.59 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 17 ~~l~~~~G~~~~si~~IA~~agvs~~tlY~ 46 (235)
T 2fbq_A 17 EQLFAEKGFAETSLRLITSKAGVNLAAVNY 46 (235)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998593407799999997939889999
No 226
>>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} (A:30-78)
Probab=45.48 E-value=1.5 Score=22.89 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=34.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999829999999999999999417986479868981
Q gi|254780305|r 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 49 ~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.-+|+++.+++.++|..++-+||-.|+|.+.+|.=+.++
T Consensus 8 s~r~la~~~~vsr~Tv~~a~~~L~~~G~i~~~~g~G~fV~ 47 (49)
T 3ic7_A 8 SVREYASIVEVNANTVXRSYEYLQSQEVIYNKRGIGFFVA 47 (49)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEEC
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC
T ss_conf 8999998759399999999999998896799638778977
No 227
>>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum} (A:1-94)
Probab=45.19 E-value=7.3 Score=19.18 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985889889999999829------999999999999999417986
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTG------IEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tg------l~~~~v~~~LleLEL~G~i~~ 79 (95)
-.-.||..|...|.|==+|.+... ++.+.++.+|-.||-+|.|..
T Consensus 15 ~~~~IL~~L~~~~~~Gyei~~~i~~~~~~~i~~gtiY~~L~rLe~~GlI~~ 65 (94)
T 3elk_A 15 ITLYILKELVKRPXHGYELQKSXFETTGQALPQGSIYILLKTXKERGFVIS 65 (94)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 999999999809994999999999971898995537999999998895799
No 228
>>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} (A:1-76)
Probab=45.11 E-value=23 Score=16.53 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999899999998588988999999982999999999999
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
.+...++.|+..--..-.+.++|++.+|++.+.|...+.
T Consensus 25 ~L~~~~r~il~l~~~~g~s~~EIA~~l~is~~~v~~~~~ 63 (76)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (76)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 688999999999998286599999998969999999999
No 229
>>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} (A:1-79)
Probab=45.02 E-value=23 Score=16.53 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|+..+|++.+.++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (79)
T 3dpj_A 18 DELFYRQGFAQTSFVDISAAVGISRGNFYY 47 (79)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997493517799999985859533778
No 230
>>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} (A:)
Probab=44.80 E-value=23 Score=16.51 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 24 ~~l~~~~G~~~~t~~~Ia~~agvs~~tiY~ 53 (203)
T 3f1b_A 24 VDVFSDRGFHETSXDAIAAKAEISKPXLYL 53 (203)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997293417799999998909889978
No 231
>>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} (A:)
Probab=44.76 E-value=23 Score=16.50 Aligned_cols=30 Identities=10% Similarity=0.259 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 27 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 56 (207)
T 2rae_A 27 IELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp HHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997295417899999883989999977
No 232
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:1-45)
Probab=44.76 E-value=22 Score=16.61 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999829999999999999
Q gi|254780305|r 49 HIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 49 ~iD~l~~~tgl~~~~v~~~Lle 70 (95)
.+.+|++.+|++.++|+.+|-.
T Consensus 2 Ti~diA~~agvS~~TVSr~ln~ 23 (45)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (45)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 6899999989599999999689
No 233
>>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} (A:)
Probab=44.68 E-value=21 Score=16.76 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++++|++.+.++-
T Consensus 40 ~l~~e~G~~~~si~~IA~~aGvs~~tiY~ 68 (241)
T 2hxi_A 40 ELLLAGDAETFSVRKLAASLGTDSSSLYR 68 (241)
T ss_dssp HHHSSSSCCCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997192307799999997919879999
No 234
>>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} (A:)
Probab=44.52 E-value=23 Score=16.48 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 22 ~~l~~~~G~~~~t~~~IA~~aGvs~~~iy~ 51 (211)
T 3bhq_A 22 TAAFISKGYDGTSXEEIATKAGASKQTVYK 51 (211)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999998493517799999984879013875
No 235
>>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} (A:)
Probab=44.45 E-value=22 Score=16.59 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 20 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (201)
T 3iuv_A 20 IRVVGQKGIAGLSHRTVAAEADVPLGSTTY 49 (201)
T ss_dssp HHHHHTTCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998490306799999997858617988
No 236
>>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=44.43 E-value=23 Score=16.47 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 20 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~ 49 (194)
T 2nx4_A 20 WRLIAARGIEAANMRDIATEAGYTNGALSH 49 (194)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997592506599999997909988853
No 237
>>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942} (A:26-138)
Probab=44.19 E-value=20 Score=16.79 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=36.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588988999999982-------99999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT-------GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t-------gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+--||..|...|.|-=+|.+.. .++.+.++.+|-.||=+|+|...
T Consensus 11 ~~~IL~~L~~~p~~Gyei~~~i~~~~~~~~~s~g~lY~~L~~Le~~g~i~~~ 62 (113)
T 2e1n_A 11 VCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGY 62 (113)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9999999817998899999999998299677864389999999988975898
No 238
>>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} (A:)
Probab=44.19 E-value=21 Score=16.71 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 48 (193)
T 2dg8_A 19 LDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997290406799999998909999976
No 239
>>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} (A:)
Probab=43.96 E-value=24 Score=16.43 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 24 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 53 (212)
T 3knw_A 24 FHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999987095528899999997909999988
No 240
>>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60)
Probab=43.77 E-value=12 Score=18.05 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 24 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (60)
T 3ljl_A 24 VDQLLRLGYDKXSYTTLSQQTGVSRTGISH 53 (60)
T ss_dssp HHHHHHTHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999987190207799999986888608988
No 241
>>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* (A:152-237)
Probab=43.32 E-value=11 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 988999999982999999999999999941798647986898
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
-|++-.+|+...|++..+|+.+|-+|+=.|+|.. +|++.+
T Consensus 26 ~~~s~~~lA~~lG~sr~tvsr~l~~l~~~gli~~--~~~i~I 65 (86)
T 3fx3_A 26 LPYDKXLIAGRLGXKPESLSRAFSRLKAAGVTVK--RNHAEI 65 (86)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECC--TTEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--CCEEEE
T ss_conf 8989999998979989999999999997897997--998998
No 242
>>2uxu_A HTH-type transcriptional regulator TTGR; repressor protein, transcription regulation, multidrug binding protein; HET: NAR; 2.3A {Pseudomonas putida} PDB: 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* (A:)
Probab=43.15 E-value=24 Score=16.36 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++-.
T Consensus 21 ~~l~~~~G~~~~si~~IA~~agvs~~tiY~~ 51 (210)
T 2uxu_A 21 ERAFYKRGVARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 9999985935288999999868895437641
No 243
>>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} (A:)
Probab=43.11 E-value=23 Score=16.46 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=24.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 27 ~~l~~~~G~~~~si~~IA~~aGvs~~tlY~ 56 (218)
T 3gzi_A 27 RNLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHC
T ss_conf 999998392305799999986889640441
No 244
>>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} (A:357-435)
Probab=43.09 E-value=10 Score=18.42 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=34.3
Q ss_pred HHHHH--HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998--5889889999999829999999999999999417986
Q gi|254780305|r 38 RIKQS--LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 38 ~Il~~--L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+++. +++.-.++=+|++++|++..++..+.-.|.=+|.|+.
T Consensus 35 ~~l~vL~ysDG~~sLLdIAe~~g~~~~~l~~~~~~L~~~gLl~~ 78 (79)
T 3k9t_A 35 AXFWVLNXSDGKNSLLDIAYKSGXEFRRIKYAADALYRVELLKL 78 (79)
T ss_dssp HHHHHHHHCEEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999986178988999999979199999999999998789152
No 245
>>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ... (A:190-306)
Probab=43.07 E-value=24 Score=16.35 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHCCCCCC------HHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 85889889------999999829999999999999999417
Q gi|254780305|r 42 SLNNVPIH------IDDIIHHTGIEAPVVYLVLLELDLAGR 76 (95)
Q Consensus 42 ~L~~~p~~------iD~l~~~tgl~~~~v~~~LleLEL~G~ 76 (95)
.=|+++.. ++-|+.+||.++.++.+++.+|-.+|+
T Consensus 47 ~Ngft~~~~~~~~~~~~Laa~TGVsVerlL~aI~~ll~~gf 87 (117)
T 2h2z_A 47 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGM 87 (117)
T ss_dssp HTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 56976633106778888787748879999999999986476
No 246
>>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} (A:)
Probab=42.77 E-value=25 Score=16.33 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 24 ~~l~~~~G~~~~si~~IA~~agvs~~t~Y 52 (199)
T 3crj_A 24 YRALREHGYADLTIQRIADEYGKSTAAVH 52 (199)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999739251889999999791999995
No 247
>>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A (A:)
Probab=42.74 E-value=25 Score=16.33 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~agvs~~tiY~ 46 (192)
T 2zcm_A 17 ITLFSEKGYDGTTLDDISKSVNIKKASLYY 46 (192)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999987393506699999987909999967
No 248
>>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:1-75)
Probab=42.70 E-value=17 Score=17.19 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++.+|++.+.++
T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y 45 (75)
T 2fd5_A 17 TQALLERGAVEPSVGEVMGAAGLTVGGFY 45 (75)
T ss_dssp HHHHHHHTTTSCCHHHHHHHTTCCGGGGG
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 99999719451689999987389942697
No 249
>>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} (A:)
Probab=42.63 E-value=25 Score=16.32 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 24 ~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (204)
T 2ibd_A 24 ATLFAERGLRATTVRDIADAAGILSGSLYH 53 (204)
T ss_dssp HHHHHHHCSTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999998493417799999986888306888
No 250
>>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} (A:)
Probab=42.41 E-value=25 Score=16.30 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=24.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++++|++.+.++.
T Consensus 29 ~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 57 (212)
T 1pb6_A 29 DTFSQFGFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp HHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99998591518899999997949888978
No 251
>>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} (A:)
Probab=41.64 E-value=26 Score=16.23 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=24.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++++|++.+.++.
T Consensus 35 ~l~~~~G~~~~ti~~Ia~~agvs~~tlY~ 63 (216)
T 1t56_A 35 NLLEDRPLADISVDDLAKGAGISRPTFYF 63 (216)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHC
T ss_conf 99997094407799999996858666603
No 252
>>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} (A:590-659)
Probab=41.56 E-value=26 Score=16.22 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999998588-988999999982999999999999999941798647
Q gi|254780305|r 37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
..||=+... +-.++++|.++||++-..+...|.-|=-.+.+.+.+
T Consensus 3 m~ILLlFN~~~~lT~~eI~~~t~l~~~~L~~~L~sL~~~kil~~~~ 48 (70)
T 1ldj_A 3 MAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLED 48 (70)
T ss_dssp HHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 9999984788887899999777909999999999997589677238
No 253
>>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A* (A:)
Probab=41.07 E-value=18 Score=17.08 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999998588-9889999999829999999999999999417986479868
Q gi|254780305|r 37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
..++..+.. ..+.++++.+.+|++-.++...|-+|.=+|+|++..+|+-
T Consensus 300 ~~~~~~~~~~~~~t~~~~~~~~~vs~~ti~r~l~~L~~~G~l~~~~~~r~ 349 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE 349 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99999999879876999999869799999999999997896787179977
No 254
>>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} (A:)
Probab=40.86 E-value=27 Score=16.16 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=38.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 4356887999899999998588988999999982999999999999999
Q gi|254780305|r 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72 (95)
Q Consensus 24 ~~~~~p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLE 72 (95)
.........+.-|.+|+..+. +..+..+|+...+++..+|...+-.+-
T Consensus 14 ~~~~~~~~Lt~rE~~Vl~ll~-~G~s~~~IA~~L~iS~~TV~~~~~~i~ 61 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLIA-QGLPNKXIARRLDITESTVKVHVKHXL 61 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHHT-TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 997873408999999999999-289999997684888999999999999
No 255
>>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:)
Probab=40.75 E-value=23 Score=16.45 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 16 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~ 45 (191)
T 1sgm_A 16 SRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998390306699999987909889988
No 256
>>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69)
Probab=40.74 E-value=20 Score=16.83 Aligned_cols=31 Identities=10% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|..-+++++|++++|++.+.++..
T Consensus 14 ~~~~~~~G~~~~t~~~Ia~~~gis~~t~Y~~ 44 (69)
T 3egq_A 14 LRLYXKKPPHEVSIEEIAREAKVSKSLIFYH 44 (69)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHC
T ss_conf 9999872923067999999868394207650
No 257
>>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} (A:)
Probab=40.71 E-value=27 Score=16.15 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~ 48 (209)
T 2gfn_A 19 LALIAREGISAVTTRAVAEESGWSTGVLNH 48 (209)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998392307799999996919999954
No 258
>>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:69-133)
Probab=40.50 E-value=27 Score=16.13 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999858-8988999999982999999999999
Q gi|254780305|r 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 37 ~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
.+|++.+. +.++++++|++.+|++...+....-
T Consensus 14 ~~~~~~i~~~~~itl~~lA~~~~~S~~~l~r~Fk 47 (65)
T 1u8b_A 14 THACRLLEQETPVTLEALADQVAXSPFHLHRLFK 47 (65)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999997236999999995471999899999999
No 259
>>1z67_A Hypothetical protein S4005; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.45A {Shigella flexneri 2a str} (A:19-135)
Probab=40.31 E-value=27 Score=16.11 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999985889889999999829999999999999999417986479868
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
..|-++||.+ .|.+++.++|++..++...|-+.==+=+=+..|+|.+
T Consensus 49 ~qi~~alG~d--~i~~lA~k~Gl~~~~~~~~La~~LP~~VD~lTP~G~~ 95 (117)
T 1z67_A 49 EQLESALGTN--AVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEV 95 (117)
T ss_dssp HHHHHHHCHH--HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTSCC
T ss_pred HHHHHHHCHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999883959--9999999989199999999999977999711989989
No 260
>>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} (A:)
Probab=39.87 E-value=28 Score=16.07 Aligned_cols=30 Identities=7% Similarity=0.197 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 12 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 41 (179)
T 2eh3_A 12 KELFFEKGYQGTSVEEIVKRANLSKGAFYF 41 (179)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999987393507599999986819340114
No 261
>>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=39.78 E-value=28 Score=16.07 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 19 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 48 (215)
T 1ui5_A 19 ADLFDRRGYESTTLSEIVAHAGVTKGALYF 48 (215)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998494528899999986889450865
No 262
>>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} (A:)
Probab=39.33 E-value=28 Score=16.06 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=25.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++.+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~ 47 (183)
T 1zk8_A 18 AEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997094405799999985889430332
No 263
>>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:336-423)
Probab=39.10 E-value=28 Score=16.01 Aligned_cols=39 Identities=3% Similarity=-0.003 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHH----CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 998999999985----889889999999829999999999999
Q gi|254780305|r 32 TQCERVRIKQSL----NNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 32 ~~~~~~~Il~~L----~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
+.+.++.|+..- .++..+.++|+...|++.++|...+..
T Consensus 26 L~~~~r~vi~lr~~~~~~e~~s~~eIA~~lgis~~tV~~~~~r 68 (88)
T 2a6h_F 26 LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENK 68 (88)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999706678998603999999989699999999999
No 264
>>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} (A:)
Probab=39.05 E-value=28 Score=16.00 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+..+++++|++++|++.+.++.
T Consensus 21 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 50 (196)
T 3he0_A 21 EQLIAESGFQGLSXQKLANEAGVAAGTIYR 50 (196)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 999997391306799999980999786511
No 265
>>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=38.97 E-value=29 Score=15.99 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 21 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 50 (216)
T 3f0c_A 21 QKRFAHYGLCKTTXNEIASDVGXGKASLYY 50 (216)
T ss_dssp HHHHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997490407899999987919878977
No 266
>>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} (A:)
Probab=38.90 E-value=29 Score=15.99 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=26.0
Q ss_pred HHHHHHHH-------CCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999985-------889889999999829999999999
Q gi|254780305|r 36 RVRIKQSL-------NNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 36 ~~~Il~~L-------~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
+.+|+++- |++-+++++|++++|++.+.++-.
T Consensus 41 r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~ 79 (214)
T 2guh_A 41 RSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKY 79 (214)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999999999983903067999999939898899888
No 267
>>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} (A:)
Probab=38.78 E-value=29 Score=15.98 Aligned_cols=31 Identities=6% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++.+|++.+.++..
T Consensus 32 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~ 62 (207)
T 3bjb_A 32 IELATEKELARVQXHEVAKRAGVAIGTLYRY 62 (207)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 9999973913066999999868391206466
No 268
>>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} (A:)
Probab=38.68 E-value=29 Score=15.97 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999985889889999999829999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
+++..-|++-+++++|++++|++.+.++-.
T Consensus 51 ~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~ 80 (225)
T 2id3_A 51 DALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 999983934077999999818996641357
No 269
>>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP} (A:36-148)
Probab=38.51 E-value=20 Score=16.79 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHC-----CC----CEEEEEC
Q ss_conf 9999998588988999999982-------99999999999999994179864-----79----8689813
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT-------GIEAPVVYLVLLELDLAGRLCHH-----PE----GKVSLTM 89 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t-------gl~~~~v~~~LleLEL~G~i~~~-----pG----g~v~l~~ 89 (95)
+--||..|...|.|-=+|.+.. .++.+.++.+|-.||=+|+|... .+ .+|+++.
T Consensus 11 ~~~IL~~L~~~p~~Gyei~~~i~~~~~~~~~s~g~lY~~L~~Le~~g~i~~~~~~~~~~~~~rk~Y~iT~ 80 (113)
T 2zfw_A 11 VCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 80 (113)
T ss_dssp HHHHHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECH
T ss_conf 9999999807999899999999998299777864379999999988984888533578899873899799
No 270
>>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2jk3_A 2fx0_A (A:1-70)
Probab=38.32 E-value=17 Score=17.25 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|+..+|++.+.++..
T Consensus 17 ~~l~~~~G~~~~ti~~Ia~~agis~~~~Y~~ 47 (70)
T 2jj7_A 17 KKKFGERGYEGTSIQEIAKEAKVNVAMASYY 47 (70)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHCCC
T ss_conf 9999985914077999998819884001047
No 271
>>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} (A:1-213)
Probab=38.00 E-value=30 Score=15.91 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 23 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~ 52 (213)
T 2qib_A 23 LDLFSRRSPDEVSIDEIASAAGISRPLVYH 52 (213)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997294406799999997949879998
No 272
>>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} (A:31-230)
Probab=37.91 E-value=30 Score=15.90 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 10 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 39 (200)
T 2iai_A 10 VQVFIERGYDGTSXEHLSKAAGISKSSIYH 39 (200)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998593626099999986938766766
No 273
>>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A (A:)
Probab=37.61 E-value=30 Score=15.87 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 24 ~~l~~~~G~~~~ti~~Ia~~aGvs~~tiY~ 53 (220)
T 3lhq_A 24 LRLFSQQGVSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999998491407799999985889334776
No 274
>>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:22-72)
Probab=37.41 E-value=30 Score=15.85 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=34.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEEECC
Q ss_conf 899999998299999999999999994179864---7986898137
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGKVSLTMH 90 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~---pGg~v~l~~~ 90 (95)
+.+|+|+.+-|+....+..-+-+||-.|++.-. -|+++-+|.-
T Consensus 1 V~LedLa~~F~l~tq~~i~RIq~Le~~g~ltGViDDRGKfIyIS~e 46 (51)
T 1wi9_A 1 VLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 46 (51)
T ss_dssp ECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred EEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCC
T ss_conf 6399999880996799999999999879865578589887997589
No 275
>>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} (A:)
Probab=37.24 E-value=14 Score=17.70 Aligned_cols=29 Identities=3% Similarity=-0.013 Sum_probs=22.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++++|++.+.++-
T Consensus 46 ~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 74 (237)
T 3kkd_A 46 RLIVRDGVRAVRHRAVAAEAQVPLSATTY 74 (237)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCTTTC--
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997492508799999998929899988
No 276
>>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* (A:1-67)
Probab=36.41 E-value=31 Score=15.77 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=27.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++.+|++.+.++..
T Consensus 16 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~ 46 (67)
T 2opt_A 16 LGILDAEGLDALSMRRLAQELKTGHASLYAH 46 (67)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999972945257999999979298799998
No 277
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355)
Probab=36.33 E-value=8.6 Score=18.80 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 889889999999829999999999999
Q gi|254780305|r 44 NNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 44 ~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
+.....+.+|++.+|++.++|+.+|-.
T Consensus 9 ~~k~~Tl~dIA~~aGVS~~TVSRaLN~ 35 (221)
T 3e3m_A 9 GHRPVTMRDVAKAAGVSRMTVSRALKK 35 (221)
T ss_dssp ---------------------------
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 989978999999988599999999689
No 278
>>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} (A:)
Probab=35.85 E-value=15 Score=17.48 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 23 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY 51 (195)
T 2iu5_A 23 KDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99998769740789999998596843330
No 279
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=35.84 E-value=29 Score=15.93 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99998588988999999982999999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
-+-+.|.+--+++.+++++.|++.++++.++-
T Consensus 22 iL~e~Le~~gis~~~lA~~lgvs~~~is~Ii~ 53 (56)
T 3cec_A 22 VIADILDDLDINTANFAEILGVSNQTIQEVIN 53 (56)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999998799999999997827899999981
No 280
>>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A (A:)
Probab=35.09 E-value=21 Score=16.75 Aligned_cols=30 Identities=3% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~ 47 (195)
T 3frq_A 18 TVVLKRCGPIEFTLSGVAKEVGLSRAALIQ 47 (195)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999998492307799999987899404887
No 281
>>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:)
Probab=34.47 E-value=11 Score=18.28 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998588988999999982---------99999999999999994179864
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHT---------GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~t---------gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
-+-.||..|...|.|==+|.+.. .++.+.++.+|-.||=+|+|.+.
T Consensus 14 ~~~~IL~~L~~~p~~GYel~~~l~~~~~~~~~~~s~g~iY~~L~rLe~~GlI~~~ 68 (118)
T 2esh_A 14 LASTILLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 9999999973399779999999999566761116845178999999988985998
No 282
>>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} (A:)
Probab=34.34 E-value=25 Score=16.28 Aligned_cols=29 Identities=0% Similarity=-0.088 Sum_probs=24.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++++|++.+.++-
T Consensus 39 ~l~~~~G~~~~ti~~Ia~~agvs~~tlY~ 67 (215)
T 2qko_A 39 EVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp HHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCEECC
T ss_conf 99998392307899999996899684011
No 283
>>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=34.06 E-value=26 Score=16.20 Aligned_cols=29 Identities=7% Similarity=0.229 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++++|++.+.++
T Consensus 26 ~~l~~~~G~~~~ti~~Ia~~aGvs~~t~Y 54 (237)
T 2hxo_A 26 VELLDTVGERGLTFRALAERLATGPGAIY 54 (237)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 99999719441679999998688977741
No 284
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=33.96 E-value=35 Score=15.54 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99899999998588988999999982999999999999
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
...|+..-+..|-..-.+.++|++++|.+.+.|+..|-
T Consensus 37 s~~e~a~~~~~l~~~g~s~~~iA~~lg~s~~~V~~~l~ 74 (76)
T 1r71_A 37 TPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (76)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999998389899999998889999999999
No 285
>>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} (A:)
Probab=33.68 E-value=18 Score=17.11 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++++|++.+.++
T Consensus 13 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 41 (189)
T 3geu_A 13 ITLFSEKGYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999749363769999998790976887
No 286
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=33.64 E-value=35 Score=15.51 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9899999998588988999999982999999999999
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
..|+..-+..|-..-.+.++|+++.|++.+.|...|-
T Consensus 21 p~E~a~a~~~l~~~g~s~~~iA~~~G~s~~~V~~~L~ 57 (59)
T 1vz0_A 21 PVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 57 (59)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999998999887299999875999999856776
No 287
>>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} (A:)
Probab=33.20 E-value=36 Score=15.47 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 27 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY~ 56 (208)
T 3cwr_A 27 QRLLSSGGAAAXTXEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 999998491304799999875998776557
No 288
>>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} (A:)
Probab=33.13 E-value=23 Score=16.53 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++..
T Consensus 13 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 43 (208)
T 2g3b_A 13 ATAIAQRGIRGLRVNDVAEVAGVSPGLLYYH 43 (208)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC
T ss_conf 9999975924162999999989099999401
No 289
>>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} (A:164-233)
Probab=32.79 E-value=36 Score=15.43 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998999999985889-8899999998299999999999999994179
Q gi|254780305|r 32 TQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i 77 (95)
++.++..||+.-... =+++..|....|++..+...+|=.|=-.|.+
T Consensus 2 Ls~Dqt~vL~~a~~~G~Vt~s~L~~~l~W~~~Ra~~aLe~li~eGl~ 48 (70)
T 1u5t_A 2 LTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLL 48 (70)
T ss_dssp CCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 53589999999986699189999988796999999999999977998
No 290
>>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C (C:199-273)
Probab=32.67 E-value=36 Score=15.42 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=31.7
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999998588---98899999998299999999999999994
Q gi|254780305|r 36 RVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLA 74 (95)
Q Consensus 36 ~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~ 74 (95)
+..||-..+. +..++++|...|+++...+-..|.-|-..
T Consensus 3 Qm~iLLlFN~~~~d~ls~~eI~~~T~l~~~eL~r~L~SL~~~ 44 (75)
T 3dpl_C 3 QLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 44 (75)
T ss_dssp HHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999834477776359999988787889999999998722
No 291
>>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} (A:)
Probab=32.56 E-value=37 Score=15.41 Aligned_cols=45 Identities=11% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 5688799989999999858898899999998299999999999999
Q gi|254780305|r 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71 (95)
Q Consensus 26 ~~~p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleL 71 (95)
.......++-|.+|+..+. .-.+..+|+...+++..+|...+-.+
T Consensus 24 ~~~~~~LT~rE~~vl~~l~-~G~t~~eIA~~L~is~~TV~~~~~~i 68 (91)
T 2rnj_A 24 AELYEMLTEREMEILLLIA-KGYSNQEIASASHITIKTVKTHVSNI 68 (91)
T ss_dssp -CTGGGCCSHHHHHHHHHH-TTCCTTHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 3553416999999999999-38999999989797998999999999
No 292
>>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} (A:)
Probab=32.48 E-value=23 Score=16.48 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998588-988999999982-----9999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
+..|++.|.. .-.+.++|++.. ..+-++++..|-+|...+ |.+.-||++
T Consensus 7 ~~~I~~li~~~~i~sq~eL~~~L~~~G~~vtqaTisRDL~eL~~~k-v~~~~G~~~ 61 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVK-VPTNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCEE-EEETTTEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCEE-EECCCCCEE
T ss_conf 9999999983898889999999998598663899987899919888-347898588
No 293
>>3d23_B 3C-like proteinase; main protease, ATP-binding, cytoplasm, endonuclease, exonuclease, helicase, hydrolase, membrane, metal-binding; HET: 3IH; 2.50A {Human coronavirus HKU1} (B:191-302)
Probab=31.52 E-value=38 Score=15.31 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8999999982999999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLELD 72 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~LleLE 72 (95)
..++-|+.+||.++.++.+++.+|-
T Consensus 58 ~~~~~Laa~TGVsVe~lLaaI~~L~ 82 (112)
T 3d23_B 58 LVLDALASMTGVSIETLLAAIKRLY 82 (112)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 6778878774877999999999996
No 294
>>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} (A:)
Probab=31.18 E-value=28 Score=16.08 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 40 ~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 69 (226)
T 2pz9_A 40 KEEFARHGIAGARVDRIAKQARTSKERVYA 69 (226)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998493418799999994899555242
No 295
>>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} (A:)
Probab=30.76 E-value=29 Score=15.95 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 24 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~ 53 (215)
T 3e7q_A 24 LACLKRHGFQGASVRKICAEAGVSVGLINH 53 (215)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997393407799999997948888988
No 296
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:1-155,A:286-330)
Probab=30.56 E-value=12 Score=17.98 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHH
Q ss_conf 899999998299999999999999-----9941798
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLEL-----DLAGRLC 78 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~LleL-----EL~G~i~ 78 (95)
..+.+|++++|++.++|+.+|-.- |.+.+|.
T Consensus 3 ~Ti~dIA~~aGVS~sTVSRaLn~~~~Vs~eTr~rVl 38 (200)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQ 38 (200)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 989999999893999999997797999999999999
No 297
>>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} (A:1-77)
Probab=30.25 E-value=22 Score=16.61 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
..++..-|..-+++++|+.++|++.+.++..
T Consensus 15 ~~l~~~~G~~~~ti~~ia~~agvs~~~~Y~~ 45 (77)
T 2id6_A 15 VEVFGKKGYDRATTDEIAEKAGVAKGLIFHY 45 (77)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCTHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC
T ss_conf 9999872914067999999879099999511
No 298
>>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A (A:191-302)
Probab=30.25 E-value=40 Score=15.19 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 88999999982999999999999999
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELD 72 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLE 72 (95)
...++-|+.+||.++.++.+++.+|-
T Consensus 54 ~~~~~~Laa~TGVsV~~lL~aI~~L~ 79 (112)
T 2zu2_A 54 EDAFSILAAKTGVCVERLLHAIQVLN 79 (112)
T ss_dssp GGGGHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 06788888874886999999999985
No 299
>>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} (A:)
Probab=30.23 E-value=38 Score=15.29 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 889889999999829999999999999999417986
Q gi|254780305|r 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 44 ~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+.-++++.+++..+++...+-..|.+|=..|+|..
T Consensus 27 ~Y~~i~l~~la~~l~l~~~~~E~~l~~mI~~~~i~a 62 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNG 62 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCE
T ss_pred HCCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 504455999999959799999999999986793899
No 300
>>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} (A:1-68)
Probab=30.19 E-value=22 Score=16.60 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~~gvs~~~~y 42 (68)
T 2vpr_A 14 LILLNEVGIEGLTTRKLAQKIGVEQPTLY 42 (68)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999739351789999999791987998
No 301
>>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} (A:)
Probab=30.18 E-value=40 Score=15.19 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++++|++.+.++.
T Consensus 52 ~lf~~~G~~~~Ti~~IA~~agvs~~tlY~ 80 (273)
T 3c07_A 52 RLFQERGYDRTTXRAIAQEAGVSVGNAYY 80 (273)
T ss_dssp HHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997392206899999997919889989
No 302
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:1-163,A:294-332)
Probab=29.85 E-value=13 Score=17.87 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89889999999829999999999999
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
...+.+.+|++++|++.++|+.+|-.
T Consensus 3 ~~~~Tl~dIA~~agVS~sTVSRvLn~ 28 (202)
T 2o20_A 3 ESTTTIYDVARVAGVSMATVSRVVNG 28 (202)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 89876999999979699999999789
No 303
>>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74)
Probab=29.81 E-value=41 Score=15.15 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHCC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99899999998588-----98899999998299999999999999994179
Q gi|254780305|r 32 TQCERVRIKQSLNN-----VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-----~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i 77 (95)
.+..+..|.+.+-. .-.++.+|++.|+.+.+.|....=.|..+|.-
T Consensus 15 lt~~e~~ia~yil~~~~~~~~~si~eiA~~~~vS~stv~Rf~kklGf~gf~ 65 (74)
T 3iwf_A 15 FTKNEKKIAQFILNYPHKVVNXTSQEIANQLETSSTSIIRLSKKVTPGGFN 65 (74)
T ss_dssp SCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHH
T ss_conf 489999999999919999977639999999799998999999995899999
No 304
>>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} (A:)
Probab=29.80 E-value=31 Score=15.80 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 24 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY 52 (203)
T 3ccy_A 24 AAXFARQGYSETSIGDIARACECSKSRLY 52 (203)
T ss_dssp HHHHHHTCTTTSCHHHHHHHTTCCGGGGT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 99999729551879999998582943044
No 305
>>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcription regulatory protein, plasmid, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} (A:)
Probab=29.14 E-value=37 Score=15.35 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-----CEEEEEC
Q ss_conf 889889999999829999999999999999417986479-----8689813
Q gi|254780305|r 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE-----GKVSLTM 89 (95)
Q Consensus 44 ~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG-----g~v~l~~ 89 (95)
...|+-+-+|+-..||++-++.+-|-.|+-.|+++..-- |+.+|.-
T Consensus 21 ~~apvktrdiadaaglsiyqvr~yleql~~vgvlekvnagkgvpglwrlle 71 (77)
T 2jt1_A 21 DGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRLLE 71 (77)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEEECC
T ss_pred CCCCEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 799703211354417407899999999997026664127899841788877
No 306
>>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} (C:151-209)
Probab=28.66 E-value=39 Score=15.23 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999998588988999999982999999999999999941
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G 75 (95)
..+|.+.|. .-.+|-.|++.+|++..+|+.+=-+|+|..
T Consensus 15 Y~rVv~mL~-~G~~is~IAk~~gisRqTVYRIK~dl~l~~ 53 (59)
T 2r0q_C 15 YHRVVEMLE-EGQAISKIAKEVNITRQTVYRIKHDNGLSS 53 (59)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHTTCC---
T ss_pred HHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 999999998-779999999998969999999999779984
No 307
>>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=27.96 E-value=25 Score=16.26 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 21 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 49 (204)
T 3eup_A 21 APVFNVKGLAGTSLTDLTEATNLTKGSIY 49 (204)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999739462889999999790999997
No 308
>>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A* (A:189-309)
Probab=27.72 E-value=45 Score=14.94 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 899999998299999999999999994
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLELDLA 74 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~LleLEL~ 74 (95)
..++-|+..||.++.++.+++.+|-..
T Consensus 64 ~~~~~Laa~TGV~V~~lL~aI~~L~~g 90 (121)
T 2q6f_A 64 TAITKLSAITGVDVCKLLRTIMVKSAQ 90 (121)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 566777777487799999999998437
No 309
>>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} (A:191-302)
Probab=27.66 E-value=45 Score=14.94 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 88999999982999999999999999
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELD 72 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLE 72 (95)
...++-|+.+||.++.++.+++-+|-
T Consensus 54 ~~~~~~Laa~TGVsVerlLaaI~~L~ 79 (112)
T 1lvo_A 54 TDAFSMLAAKTGQSVEKLLDSIVRLN 79 (112)
T ss_dssp SGGGHHHHHHHCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 15778877773874999999999985
No 310
>>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:)
Probab=27.50 E-value=45 Score=14.92 Aligned_cols=41 Identities=2% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHH----CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 79998999999985----889889999999829999999999999
Q gi|254780305|r 30 EYTQCERVRIKQSL----NNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 30 ~~~~~~~~~Il~~L----~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
..+.+.++.|+..- .+++.+..+|+...|++.++|...+..
T Consensus 17 ~~L~~~~r~vl~lry~l~~~e~~s~~EIA~~lgis~~~V~~~~~r 61 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 649999999999971778999566999999969889999999999
No 311
>>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} (C:604-661)
Probab=27.36 E-value=45 Score=14.91 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8988999999982999999999999999
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELD 72 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLE 72 (95)
.+.++.++|...|+++...+-..|.-|-
T Consensus 2 ~~~lsy~eI~~~T~i~~~eL~r~L~SLa 29 (58)
T 2hye_C 2 GDGFSFEEIKMATGIEDSELRRTLQSLA 29 (58)
T ss_dssp CCCEEHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 7883699999887909999999999987
No 312
>>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} (A:)
Probab=26.88 E-value=46 Score=14.86 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99989999999858898899999998299----999999999999994179864798689
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGI----EAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl----~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.+.+-+++|.+.|..+|.+.-+|+...|+ +-..|+..|-.+. +..+--|+.+-
T Consensus 8 ~~~T~Re~i~~lL~~~plta~ela~~l~i~~~~~ek~Vy~hLeHIa---ksl~r~g~~L~ 64 (105)
T 2gmg_A 8 GSATRREKIIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVIS---KIAKREGMVLL 64 (105)
T ss_dssp CHHHHHHHHHHHTTTSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHH---HHHTTTTEEEE
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH---HHHHCCCCEEE
T ss_conf 4311999999999829999999999963345440889999999999---98860897699
No 313
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=26.84 E-value=46 Score=14.85 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999998588988999999982999999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+.+++.+ -+++-+++++.|++.+.++.++-
T Consensus 14 ~E~Le~~---gis~~~lA~~lgvs~~~is~ii~ 43 (46)
T 2ict_A 14 QESLDEL---NVSLREFARAXEIAPSTASRLLT 43 (46)
T ss_dssp HHHHHHH---TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999997---99999999999777899999980
No 314
>>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii} (A:)
Probab=26.71 E-value=28 Score=16.03 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 26 ~~l~~~~G~~~~ti~~Ia~~agvs~~tiY 54 (211)
T 3him_A 26 IEVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp HHHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 99999849250779999999689965222
No 315
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349)
Probab=26.58 E-value=16 Score=17.37 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 889999999829999999999999
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
.+.+.+|++.+|++.++|+.+|-.
T Consensus 3 kvTikDIA~~aGVS~aTVSraLN~ 26 (219)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQ 26 (219)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 778999999988599999999679
No 316
>>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* (A:)
Probab=26.30 E-value=39 Score=15.25 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=25.0
Q ss_pred HHHHHHHH-------HCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99999998-------588988999999982999999999
Q gi|254780305|r 35 ERVRIKQS-------LNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 35 ~~~~Il~~-------L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
-+++|+++ -|+.-+++++|++.+|++.+.++.
T Consensus 45 ~r~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~tiY~ 83 (256)
T 3g1l_A 45 RELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (256)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999999999998392316299999997909988836
No 317
>>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} (A:61-135)
Probab=26.11 E-value=48 Score=14.78 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 988999999982--999999999999999941798647986898137998
Q gi|254780305|r 46 VPIHIDDIIHHT--GIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93 (95)
Q Consensus 46 ~p~~iD~l~~~t--gl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~~~ 93 (95)
.-+.-++|..+. +++.....+.|-.|.=+|.| ..-|+.|++..|-+.
T Consensus 26 ~G~~keeLr~~~~~~~~~~~f~~lL~~l~~~g~i-~~~~~~v~l~~h~v~ 74 (75)
T 2v9v_A 26 PGLAREELRSRYFSRLPARVYQALLEEWSREGRL-QLAANTVALAGFTPS 74 (75)
T ss_dssp SCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSE-EECSSEEEETTCCCC
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCE-EEECCEEECCCCCCC
T ss_conf 0989999998851238999999999999978996-875899888997788
No 318
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:1-161,A:294-339)
Probab=25.92 E-value=17 Score=17.27 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89999999829999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
+.+-+|++++|++.++|+.+|-.
T Consensus 5 vTikdIA~~aGVS~sTVSrvLng 27 (207)
T 3h5o_A 5 VTXHDVAKAAGVSAITVSRVLNQ 27 (207)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 45999999989599999999589
No 319
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333)
Probab=25.87 E-value=17 Score=17.26 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH-----HHHHHHHHH
Q ss_conf 889999999829999999999999-----999417986
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLE-----LDLAGRLCH 79 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~Lle-----LEL~G~i~~ 79 (95)
-..+.+|++.+|++.++|+.+|-. =|.+.+|..
T Consensus 6 k~Ti~dIA~~aGVS~aTVSRvLN~~~~Vs~~Tr~rV~~ 43 (205)
T 3jvd_A 6 KSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQA 43 (205)
T ss_dssp --------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98899999998969999999977969999999999999
No 320
>>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:)
Probab=25.25 E-value=50 Score=14.69 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHCCC-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 998999999985889-----889999999829999999999999999417
Q gi|254780305|r 32 TQCERVRIKQSLNNV-----PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~-----p~~iD~l~~~tgl~~~~v~~~LleLEL~G~ 76 (95)
.++.+++|.+.+-.. -.+|.+|+..||.+.++|....=.|-..|+
T Consensus 19 Lt~~e~~ia~yil~n~~~~~~~si~eiA~~~~vS~sTI~Rf~kkLGy~gf 68 (111)
T 2o3f_A 19 LPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGF 68 (111)
T ss_dssp SCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSH
T ss_pred CCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCH
T ss_conf 79999999999995924765557999999979899999999999667989
No 321
>>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} (A:1-67)
Probab=24.97 E-value=24 Score=16.38 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|.+-+++++|++.+|++.+.++.
T Consensus 13 ~~l~~~~G~~~~t~~~Ia~~~gvs~~~~y~ 42 (67)
T 2vke_A 13 LELLNETGIDGLTTRKLAQKLGIEQPTLYW 42 (67)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 999999729341789999999890976998
No 322
>>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:259-314)
Probab=24.01 E-value=53 Score=14.55 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCC--HHHHHHHHH
Q ss_conf 99999998588988999999982999--999999999
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIE--APVVYLVLL 69 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~--~~~v~~~Ll 69 (95)
..+++.+.+|.+| ++++|+..+|+| ..+|..+|-
T Consensus 16 ~~~~l~q~~grep-t~eEiA~~l~~p~~~ekV~~~l~ 51 (56)
T 2a6h_F 16 TARQLQQELGREP-TYEEIAEAMGPGWDAKRVEETLK 51 (56)
T ss_dssp HHHHHHHHHSSCC-CHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999848998-47899988435412999999999
No 323
>>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} (A:)
Probab=23.72 E-value=28 Score=16.04 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 23 ~~l~~~~G~~~~ti~~IA~~agvs~~tiY 51 (210)
T 2qco_A 23 LELFLTKGYQETSLSDIIKLSGGSYSNIY 51 (210)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHCTTCTTCS
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCHHH
T ss_conf 99999729452789999987299974036
No 324
>>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} (A:1-73)
Probab=23.46 E-value=54 Score=14.49 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHH-----CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9998999999985-----88988999999982999999999999999941798647986
Q gi|254780305|r 31 YTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 31 ~~~~~~~~Il~~L-----~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
.++.+.=+||.++ .++=+.++.|.+.++++.+.+.-.|-.|-=.|.|.+-...|
T Consensus 9 ~L~~~d~RVL~aiE~gmknhE~VP~elI~~~s~L~~~~~~~~L~~L~k~kLv~~~~~~Y 67 (73)
T 1zar_A 9 KMGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDY 67 (73)
T ss_dssp TCCHHHHHHHHHHHTTTTTCSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred HCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCC
T ss_conf 55887889999999475787648999999983899305899999987560314027887
No 325
>>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* (A:61-117)
Probab=23.30 E-value=54 Score=14.48 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89889999999829999999999999999417986479868981
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.+|..+..|+..+|--+.++-..|-.|+=-|++ ..-||+.+|+
T Consensus 2 ~~~kd~~tLA~~~~avP~RL~mLLeaLrQigi~-~~~~gkWsLT 44 (57)
T 1x19_A 2 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVI-NLEDGKWSLT 44 (57)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE-EEETTEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE-EEECCEEECC
T ss_conf 799999999988790999999999999877968-9669978529
No 326
>>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:61-132)
Probab=22.67 E-value=56 Score=14.41 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 988999999982--999999999999999941798647986898137
Q gi|254780305|r 46 VPIHIDDIIHHT--GIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 46 ~p~~iD~l~~~t--gl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95)
.-+.-++|..+. +++.....+.|=.|.=+|.| ..-|+.|+|..|
T Consensus 26 ~G~~keeLrs~~~~~~~~k~f~~lL~~l~~~g~i-~~~~~~v~L~~h 71 (72)
T 1lva_A 26 PGLAREELRSRYFSRLPARVYQALLEEWSREGRL-QLAANTVALAGF 71 (72)
T ss_dssp SCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSE-EEETTEEEETTC
T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE-EEECCEEECCCC
T ss_conf 5989999996613137999999999999868986-975999976898
No 327
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=22.30 E-value=57 Score=14.36 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8898899999998299999999999999994179
Q gi|254780305|r 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77 (95)
Q Consensus 44 ~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i 77 (95)
=.+-..-++|+++.|++..+|+..|-+-.=.|.|
T Consensus 18 Y~~gltQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV 51 (54)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQGIV 51 (54)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEE
T ss_conf 8349999999998698999999999999976907
No 328
>>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} (A:1-67)
Probab=21.44 E-value=60 Score=14.26 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 89999999858898-8999999982999999999999
Q gi|254780305|r 34 CERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 34 ~~~~~Il~~L~~~p-~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
.+...|+..+...+ +.--+|++.-|++.++|+.+|=
T Consensus 11 ~eK~~ii~~~e~g~~~s~~~iAr~~gi~~STis~IlK 47 (67)
T 1hlv_A 11 REKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK 47 (67)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 8774899998739751100677750898488999996
No 329
>>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} (A:173-236)
Probab=20.09 E-value=64 Score=14.10 Aligned_cols=40 Identities=15% Similarity=-0.075 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99989999999858898899999998299999999999999
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleL 71 (95)
..++-|.+|+..+. +-....+|+++.|++..+|...+-.+
T Consensus 3 ~LT~~E~~vl~l~~-~G~~~~eIA~~l~iS~~tV~~~~~~i 42 (64)
T 2q0o_A 3 MLSPREMLCLVWAS-KGKTASVTANLTGINARTVQHYLDKA 42 (64)
T ss_dssp SCCHHHHHHHHHHH-TTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999987-59999999999599999999999999
Done!