HHsearch results for GI: 254780305 and protein with PDBid: 1ub9_A

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=94.19  E-value=0.019  Score=32.28  Aligned_cols=49  Identities=12%  Similarity=-0.031  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             989999999858-8988999999982999999999999999941798647
Q gi|254780305|r   33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      ++.+-.|+..|. .++..+.+|++.+|++.+.++..|-.||=+|+|.+..
T Consensus        15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~   64 (100)
T 1ub9_A           15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK   64 (100)
T ss_dssp             SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             99999999998518998399999998919989999999998589069987