HHsearch results for GI: 254780305 and protein with PDBid: 1ub9_A
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=94.19 E-value=0.019 Score=32.28 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 989999999858-8988999999982999999999999999941798647
Q gi|254780305|r 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
++.+-.|+..|. .++..+.+|++.+|++.+.++..|-.||=+|+|.+..
T Consensus 15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~ 64 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99999999998518998399999998919989999999998589069987