Query gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 95
No_of_seqs 103 out of 449
Neff 5.6
Searched_HMMs 23785
Date Mon May 30 09:15:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780305.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3maj_A DNA processing chain A; 99.4 1.1E-13 4.7E-18 93.0 5.1 62 27-88 321-382 (382)
2 1mkm_A ICLR transcriptional re 97.0 0.00085 3.6E-08 39.6 5.0 52 38-89 12-65 (249)
3 2o0y_A Transcriptional regulat 96.8 0.0009 3.8E-08 39.5 3.7 56 34-89 22-80 (260)
4 1j5y_A Transcriptional regulat 96.7 0.0017 7.3E-08 37.9 4.7 50 36-85 23-75 (187)
5 1ku9_A Hypothetical protein MJ 96.2 0.0044 1.8E-07 35.8 4.4 50 32-81 24-75 (152)
6 2g7u_A Transcriptional regulat 96.1 0.0056 2.4E-07 35.2 4.3 51 38-89 18-70 (257)
7 1uly_A Hypothetical protein PH 95.9 0.013 5.4E-07 33.3 5.4 49 32-80 18-66 (192)
8 2p4w_A Transcriptional regulat 95.9 0.0059 2.5E-07 35.1 3.6 47 33-79 14-60 (202)
9 2ia2_A Putative transcriptiona 95.8 0.0073 3.1E-07 34.6 3.9 52 38-90 25-78 (265)
10 1sfx_A Conserved hypothetical 95.8 0.012 4.9E-07 33.5 4.9 59 29-87 15-77 (109)
11 2oqg_A Possible transcriptiona 95.6 0.0071 3E-07 34.6 3.3 54 32-85 19-72 (114)
12 3jth_A Transcription activator 95.6 0.012 5.1E-07 33.4 4.5 57 32-88 21-80 (98)
13 2d1h_A ST1889, 109AA long hypo 95.6 0.0076 3.2E-07 34.5 3.4 53 31-83 18-72 (109)
14 1r1t_A Transcriptional repress 95.5 0.015 6.1E-07 32.9 4.7 53 33-85 45-97 (122)
15 3i53_A O-methyltransferase; CO 95.5 0.014 5.8E-07 33.1 4.5 56 34-89 25-80 (332)
16 3f6o_A Probable transcriptiona 95.4 0.0055 2.3E-07 35.2 2.2 55 32-86 16-70 (118)
17 3f6v_A Possible transcriptiona 95.3 0.0078 3.3E-07 34.4 2.6 54 32-85 56-109 (151)
18 2jsc_A Transcriptional regulat 95.2 0.0076 3.2E-07 34.5 2.4 57 32-88 19-78 (118)
19 3cuo_A Uncharacterized HTH-typ 95.0 0.024 1E-06 31.8 4.5 57 32-88 22-82 (99)
20 1r1u_A CZRA, repressor protein 95.0 0.015 6.4E-07 32.8 3.4 55 31-85 23-77 (106)
21 1tw3_A COMT, carminomycin 4-O- 94.9 0.019 8.1E-07 32.3 3.7 53 36-88 41-93 (360)
22 2wte_A CSA3; antiviral protein 94.9 0.038 1.6E-06 30.7 5.2 59 30-88 148-208 (244)
23 1y0u_A Arsenical resistance op 94.9 0.038 1.6E-06 30.7 5.2 56 32-89 29-84 (96)
24 2gxg_A 146AA long hypothetical 94.9 0.054 2.3E-06 29.9 6.0 55 29-83 32-86 (146)
25 1qbj_A Protein (double-strande 94.6 0.047 2E-06 30.2 4.9 56 35-90 11-72 (81)
26 2ip2_A Probable phenazine-spec 94.5 0.035 1.5E-06 30.9 4.2 54 35-88 29-82 (334)
27 3lst_A CALO1 methyltransferase 94.4 0.03 1.2E-06 31.3 3.6 53 36-89 44-96 (348)
28 1ub9_A Hypothetical protein PH 94.2 0.019 8.1E-07 32.3 2.3 49 33-81 15-64 (100)
29 2heo_A Z-DNA binding protein 1 94.1 0.037 1.6E-06 30.8 3.7 57 32-88 8-66 (67)
30 2kko_A Possible transcriptiona 94.1 0.021 8.7E-07 32.1 2.4 53 33-85 24-76 (108)
31 1x19_A CRTF-related protein; m 93.8 0.09 3.8E-06 28.7 5.2 52 36-88 53-104 (359)
32 2f2e_A PA1607; transcription f 93.7 0.051 2.1E-06 30.0 3.8 52 37-88 27-83 (146)
33 3b73_A PHIH1 repressor-like pr 93.7 0.051 2.2E-06 30.0 3.8 57 33-89 12-71 (111)
34 1u2w_A CADC repressor, cadmium 93.4 0.071 3E-06 29.2 4.0 56 33-88 41-100 (122)
35 1qgp_A Protein (double strande 93.3 0.068 2.9E-06 29.3 3.9 54 35-88 15-74 (77)
36 2qlz_A Transcription factor PF 93.1 0.019 8E-07 32.3 0.7 48 33-80 11-58 (232)
37 3kp7_A Transcriptional regulat 93.0 0.044 1.9E-06 30.3 2.4 50 31-80 35-84 (151)
38 3f3x_A Transcriptional regulat 92.9 0.042 1.7E-06 30.5 2.3 53 32-84 35-87 (144)
39 3boq_A Transcriptional regulat 92.8 0.054 2.3E-06 29.9 2.7 53 31-83 44-98 (160)
40 1on2_A Transcriptional regulat 92.7 0.11 4.6E-06 28.2 4.1 51 38-88 12-63 (142)
41 2ia0_A Putative HTH-type trans 92.3 0.11 4.6E-06 28.2 3.8 48 31-78 14-62 (171)
42 2zkz_A Transcriptional repress 92.3 0.047 2E-06 30.2 1.8 53 32-85 25-78 (99)
43 3gwz_A MMCR; methyltransferase 92.3 0.076 3.2E-06 29.1 2.9 53 36-88 60-113 (369)
44 3hsr_A HTH-type transcriptiona 92.3 0.14 5.9E-06 27.6 4.3 56 29-84 31-87 (140)
45 2nyx_A Probable transcriptiona 92.0 0.081 3.4E-06 28.9 2.8 53 31-83 42-95 (168)
46 3e6m_A MARR family transcripti 92.0 0.12 5E-06 28.0 3.6 53 31-83 50-103 (161)
47 2pn6_A ST1022, 150AA long hypo 91.9 0.26 1.1E-05 26.2 5.3 47 33-79 2-49 (150)
48 2h09_A Transcriptional regulat 91.6 0.17 7.3E-06 27.1 4.1 51 38-88 44-95 (155)
49 3dp7_A SAM-dependent methyltra 91.3 0.26 1.1E-05 26.2 4.8 52 36-88 37-90 (363)
50 2nnn_A Probable transcriptiona 91.3 0.12 5.1E-06 28.0 3.1 54 30-83 34-88 (140)
51 1qzz_A RDMB, aclacinomycin-10- 91.2 0.15 6.2E-06 27.5 3.4 53 36-88 38-92 (374)
52 1s3j_A YUSO protein; structura 91.2 0.15 6.2E-06 27.5 3.4 54 30-83 33-87 (155)
53 2rdp_A Putative transcriptiona 91.2 0.17 7.1E-06 27.2 3.7 54 29-82 37-91 (150)
54 2x4h_A Hypothetical protein SS 91.1 0.39 1.6E-05 25.2 5.5 50 38-88 21-71 (139)
55 2hr3_A Probable transcriptiona 91.0 0.2 8.6E-06 26.7 4.0 55 30-84 31-87 (147)
56 2e1c_A Putative HTH-type trans 91.0 0.23 9.6E-06 26.5 4.3 49 31-79 24-73 (171)
57 3bpv_A Transcriptional regulat 91.0 0.2 8.5E-06 26.8 4.0 57 27-83 22-79 (138)
58 2cyy_A Putative HTH-type trans 91.0 0.25 1E-05 26.3 4.4 50 31-80 4-54 (151)
59 3nqo_A MARR-family transcripti 90.7 0.24 1E-05 26.3 4.2 52 31-82 38-92 (189)
60 2pex_A Transcriptional regulat 90.7 0.18 7.8E-06 27.0 3.6 56 28-83 41-97 (153)
61 3nrv_A Putative transcriptiona 90.7 0.2 8.6E-06 26.8 3.8 53 31-83 37-90 (148)
62 3eco_A MEPR; mutlidrug efflux 90.7 0.23 9.6E-06 26.5 4.0 57 27-83 24-83 (139)
63 3ech_A MEXR, multidrug resista 90.6 0.18 7.4E-06 27.1 3.4 55 30-84 33-88 (142)
64 1i1g_A Transcriptional regulat 90.6 0.21 8.7E-06 26.7 3.7 46 34-79 4-50 (141)
65 2hzt_A Putative HTH-type trans 90.5 0.2 8.4E-06 26.8 3.6 45 37-81 17-62 (107)
66 3cjn_A Transcriptional regulat 90.5 0.19 8.2E-06 26.9 3.5 56 28-83 46-102 (162)
67 1jgs_A Multiple antibiotic res 90.4 0.24 1E-05 26.4 3.9 54 28-81 28-82 (138)
68 3hrs_A Metalloregulator SCAR; 90.4 0.39 1.6E-05 25.3 5.0 51 38-88 10-61 (214)
69 1fx7_A Iron-dependent represso 90.4 0.26 1.1E-05 26.2 4.0 52 37-88 13-65 (230)
70 3bdd_A Regulatory protein MARR 90.4 0.23 9.6E-06 26.5 3.8 53 31-83 28-81 (142)
71 2r3s_A Uncharacterized protein 90.3 0.2 8.3E-06 26.8 3.4 52 36-88 28-79 (335)
72 3i4p_A Transcriptional regulat 90.3 0.48 2E-05 24.7 5.4 46 34-79 3-49 (162)
73 3lwf_A LIN1550 protein, putati 90.3 0.33 1.4E-05 25.7 4.5 53 38-90 31-89 (159)
74 2cg4_A Regulatory protein ASNC 90.0 0.37 1.5E-05 25.4 4.5 48 32-79 6-54 (152)
75 3bj6_A Transcriptional regulat 89.9 0.21 8.8E-06 26.7 3.2 54 30-83 36-90 (152)
76 1okr_A MECI, methicillin resis 89.7 0.23 9.8E-06 26.4 3.4 56 30-85 6-66 (123)
77 3g3z_A NMB1585, transcriptiona 89.6 0.34 1.4E-05 25.6 4.1 54 30-83 27-81 (145)
78 3oop_A LIN2960 protein; protei 89.3 0.27 1.1E-05 26.1 3.5 56 28-83 31-87 (143)
79 3deu_A Transcriptional regulat 89.2 0.28 1.2E-05 26.0 3.5 58 25-82 44-103 (166)
80 1yyv_A Putative transcriptiona 89.1 0.23 9.7E-06 26.5 3.0 46 36-81 37-83 (131)
81 2qq9_A Diphtheria toxin repres 89.1 0.34 1.4E-05 25.5 3.9 52 37-88 13-65 (226)
82 3c7j_A Transcriptional regulat 89.0 0.53 2.2E-05 24.5 4.8 44 46-89 48-91 (237)
83 3bja_A Transcriptional regulat 88.9 0.12 5E-06 28.0 1.4 55 29-83 28-83 (139)
84 3dbw_A Transcriptional regulat 88.9 0.41 1.7E-05 25.1 4.1 44 46-89 42-85 (226)
85 2qww_A Transcriptional regulat 88.8 0.24 1E-05 26.4 2.9 50 31-80 38-88 (154)
86 2eth_A Transcriptional regulat 88.8 0.29 1.2E-05 25.9 3.3 52 31-82 41-93 (154)
87 2fxa_A Protease production reg 88.7 0.29 1.2E-05 25.9 3.3 57 27-83 41-98 (207)
88 3k0l_A Repressor protein; heli 88.7 0.2 8.3E-06 26.8 2.4 55 28-82 40-95 (162)
89 3k2z_A LEXA repressor; winged 88.6 0.5 2.1E-05 24.6 4.5 52 33-84 4-61 (196)
90 2dbb_A Putative HTH-type trans 88.4 0.4 1.7E-05 25.2 3.8 49 31-79 6-55 (151)
91 1p4x_A Staphylococcal accessor 88.4 0.37 1.5E-05 25.4 3.6 52 31-82 155-209 (250)
92 2fbh_A Transcriptional regulat 88.3 0.43 1.8E-05 25.0 3.9 60 29-88 32-99 (146)
93 2w25_A Probable transcriptiona 88.0 0.59 2.5E-05 24.3 4.5 49 31-79 4-53 (150)
94 1z6r_A MLC protein; transcript 87.8 0.86 3.6E-05 23.4 5.2 47 34-80 16-63 (406)
95 3cdh_A Transcriptional regulat 87.8 0.82 3.4E-05 23.5 5.1 55 29-83 38-93 (155)
96 1z91_A Organic hydroperoxide r 87.7 0.29 1.2E-05 25.9 2.8 55 29-83 35-90 (147)
97 2g9w_A Conserved hypothetical 87.6 0.56 2.4E-05 24.4 4.1 54 31-84 6-65 (138)
98 2fsw_A PG_0823 protein; alpha- 87.5 0.34 1.4E-05 25.6 3.0 46 36-81 27-73 (107)
99 3bro_A Transcriptional regulat 87.4 0.55 2.3E-05 24.4 4.0 53 30-82 30-85 (141)
100 2fe3_A Peroxide operon regulat 87.3 0.92 3.9E-05 23.2 5.1 50 32-81 20-76 (145)
101 3df8_A Possible HXLR family tr 87.2 0.64 2.7E-05 24.1 4.3 53 36-88 29-86 (111)
102 2fa5_A Transcriptional regulat 87.2 0.53 2.2E-05 24.5 3.9 53 31-83 46-99 (162)
103 2dk5_A DNA-directed RNA polyme 87.1 1.4 6.1E-05 22.2 6.0 69 22-90 8-84 (91)
104 3fm5_A Transcriptional regulat 87.1 0.54 2.3E-05 24.5 3.8 55 28-82 33-89 (150)
105 2p5v_A Transcriptional regulat 87.1 0.72 3E-05 23.8 4.5 49 31-79 7-56 (162)
106 2a61_A Transcriptional regulat 87.0 0.5 2.1E-05 24.6 3.6 54 31-84 30-84 (145)
107 1z7u_A Hypothetical protein EF 86.6 0.33 1.4E-05 25.6 2.5 45 37-81 25-70 (112)
108 2hs5_A Putative transcriptiona 86.2 0.53 2.2E-05 24.5 3.4 47 43-89 46-93 (239)
109 2frh_A SARA, staphylococcal ac 86.1 0.56 2.3E-05 24.4 3.5 54 30-83 33-89 (127)
110 2cfx_A HTH-type transcriptiona 85.9 0.85 3.6E-05 23.4 4.3 48 32-79 3-51 (144)
111 2w57_A Ferric uptake regulatio 85.7 0.63 2.7E-05 24.1 3.6 49 33-81 16-72 (150)
112 2htj_A P fimbrial regulatory p 85.3 0.58 2.4E-05 24.3 3.3 47 36-82 2-49 (81)
113 1sd4_A Penicillinase repressor 85.1 0.59 2.5E-05 24.3 3.2 55 31-85 7-66 (126)
114 3mcz_A O-methyltransferase; ad 85.0 1 4.3E-05 23.0 4.4 50 37-88 47-96 (352)
115 1z05_A Transcriptional regulat 84.9 0.81 3.4E-05 23.5 3.8 45 35-79 40-85 (429)
116 3by6_A Predicted transcription 84.1 0.84 3.5E-05 23.4 3.6 43 46-88 33-76 (126)
117 3jw4_A Transcriptional regulat 84.0 0.8 3.4E-05 23.5 3.5 55 30-84 37-94 (148)
118 1u5t_A Appears to BE functiona 83.3 1.3 5.5E-05 22.4 4.3 54 26-79 159-213 (233)
119 3ihu_A Transcriptional regulat 83.2 0.83 3.5E-05 23.5 3.3 44 46-89 38-81 (222)
120 3f8m_A GNTR-family protein tra 83.2 1.7 7.3E-05 21.7 4.9 54 33-86 20-75 (248)
121 2hoe_A N-acetylglucosamine kin 83.1 0.62 2.6E-05 24.1 2.6 45 36-80 22-66 (380)
122 2pjp_A Selenocysteine-specific 82.8 0.67 2.8E-05 23.9 2.7 55 34-88 3-61 (121)
123 3eet_A Putative GNTR-family tr 82.8 1.2 5.2E-05 22.5 4.1 43 46-88 51-94 (272)
124 1jhf_A LEXA repressor; LEXA SO 82.8 1.9 8.1E-05 21.5 5.0 57 31-87 3-66 (202)
125 3cta_A Riboflavin kinase; stru 82.6 0.44 1.8E-05 25.0 1.7 40 46-85 26-65 (230)
126 2bv6_A MGRA, HTH-type transcri 82.3 0.35 1.5E-05 25.5 1.1 53 31-83 34-87 (142)
127 3cuq_A Vacuolar-sorting protei 82.2 2.5 0.00011 20.9 5.7 53 27-79 147-200 (234)
128 3neu_A LIN1836 protein; struct 81.9 1.2 4.9E-05 22.7 3.6 43 46-88 35-78 (125)
129 1lj9_A Transcriptional regulat 81.4 0.61 2.6E-05 24.2 2.1 52 31-82 26-78 (144)
130 3cuq_B Vacuolar protein-sortin 81.2 0.93 3.9E-05 23.2 2.9 52 28-79 148-200 (218)
131 1p6r_A Penicillinase repressor 80.4 1 4.4E-05 22.9 2.9 56 31-86 6-66 (82)
132 2fmy_A COOA, carbon monoxide o 79.4 1.9 7.9E-05 21.6 4.0 43 46-88 166-208 (220)
133 2o03_A Probable zinc uptake re 79.2 1.1 4.5E-05 22.9 2.7 48 34-81 11-65 (131)
134 2fu4_A Ferric uptake regulatio 79.2 2.4 9.9E-05 21.0 4.5 50 32-81 15-72 (83)
135 2fbi_A Probable transcriptiona 79.1 1.1 4.5E-05 22.9 2.7 52 31-82 33-85 (142)
136 3edp_A LIN2111 protein; APC883 78.8 2.1 8.9E-05 21.3 4.1 44 46-89 31-75 (236)
137 2wv0_A YVOA, HTH-type transcri 78.2 1.7 7.2E-05 21.8 3.5 43 46-88 32-75 (243)
138 2ek5_A Predicted transcription 77.9 1.5 6.3E-05 22.1 3.1 43 46-88 26-69 (129)
139 1ft9_A Carbon monoxide oxidati 77.2 1.9 8E-05 21.5 3.5 42 47-88 163-204 (222)
140 1zg3_A Isoflavanone 4'-O-methy 76.8 1.2 5.1E-05 22.6 2.4 54 35-88 31-99 (358)
141 2di3_A Bacterial regulatory pr 76.6 2 8.3E-05 21.4 3.5 38 46-83 26-64 (239)
142 1mzb_A Ferric uptake regulatio 76.5 3.9 0.00016 19.9 5.2 50 32-81 16-73 (136)
143 3eyy_A Putative iron uptake re 75.8 2.2 9.1E-05 21.2 3.5 50 33-82 18-73 (145)
144 1ylf_A RRF2 family protein; st 75.4 1.8 7.4E-05 21.7 2.9 44 45-89 28-73 (149)
145 2fbk_A Transcriptional regulat 75.0 1.2 5.1E-05 22.6 2.0 58 25-82 60-121 (181)
146 3m6z_A Topoisomerase V; helix- 74.7 3.1 0.00013 20.4 4.0 37 29-65 178-215 (380)
147 1hw1_A FADR, fatty acid metabo 74.4 2.7 0.00011 20.7 3.6 44 46-89 29-73 (239)
148 1xmk_A Double-stranded RNA-spe 74.4 1 4.3E-05 23.0 1.5 50 34-83 11-62 (79)
149 1bia_A BIRA bifunctional prote 74.3 4.4 0.00019 19.5 5.7 56 34-89 5-62 (321)
150 1zyb_A Transcription regulator 74.0 1.8 7.7E-05 21.6 2.7 41 47-88 186-226 (232)
151 2yu3_A DNA-directed RNA polyme 74.0 4.5 0.00019 19.5 5.7 57 24-80 27-86 (95)
152 2obp_A Putative DNA-binding pr 73.6 2.7 0.00011 20.7 3.5 48 31-78 13-67 (96)
153 2v9v_A Selenocysteine-specific 72.8 2.2 9.3E-05 21.2 2.9 43 39-81 7-51 (135)
154 2csb_A Topoisomerase V, TOP61; 70.5 4.4 0.00019 19.5 4.0 37 29-65 178-215 (519)
155 3k69_A Putative transcription 70.1 2.2 9.4E-05 21.1 2.4 53 38-90 16-73 (162)
156 1uxc_A FRUR (1-57), fructose r 69.5 3.4 0.00014 20.2 3.3 22 48-69 1-22 (65)
157 2nr3_A Hypothetical protein; A 69.4 3.9 0.00017 19.8 3.6 57 31-87 21-95 (183)
158 3iwz_A CAP-like, catabolite ac 68.9 4.1 0.00017 19.7 3.6 42 47-89 187-228 (230)
159 2ozu_A Histone acetyltransfera 68.6 3.2 0.00013 20.3 3.0 47 36-85 200-249 (284)
160 2dql_A PEX protein; circadian 68.3 6.1 0.00026 18.8 4.4 57 32-88 18-92 (115)
161 3bwg_A Uncharacterized HTH-typ 68.0 4.9 0.0002 19.3 3.8 54 37-90 16-72 (239)
162 1xd7_A YWNA; structural genomi 66.9 5.3 0.00022 19.1 3.8 51 38-89 13-66 (145)
163 3ni7_A Bacterial regulatory pr 64.4 6.7 0.00028 18.6 4.0 31 37-67 17-47 (213)
164 2gau_A Transcriptional regulat 64.1 4.4 0.00018 19.6 3.0 41 47-88 180-220 (232)
165 1lva_A Selenocysteine-specific 64.0 7.5 0.00032 18.3 4.6 48 41-88 151-198 (258)
166 2vxz_A Pyrsv_GP04; viral prote 63.9 5.7 0.00024 18.9 3.5 52 36-87 13-64 (165)
167 2k4b_A Transcriptional regulat 63.1 1.1 4.8E-05 22.7 -0.2 50 36-85 37-91 (99)
168 2z99_A Putative uncharacterize 62.6 7.9 0.00033 18.2 4.0 62 29-90 8-79 (219)
169 1fp1_D Isoliquiritigenin 2'-O- 62.5 2.7 0.00011 20.7 1.7 54 36-89 46-118 (372)
170 3e97_A Transcriptional regulat 62.4 6.4 0.00027 18.7 3.5 41 47-88 175-215 (231)
171 3lmm_A Uncharacterized protein 61.9 8.2 0.00035 18.1 4.4 58 31-88 427-489 (583)
172 2vn2_A DNAD, chromosome replic 61.9 6.4 0.00027 18.7 3.5 49 32-80 30-84 (128)
173 2v79_A DNA replication protein 61.3 5.4 0.00023 19.1 3.0 49 32-80 30-84 (135)
174 3e6c_C CPRK, cyclic nucleotide 61.2 5.8 0.00024 18.9 3.2 42 46-88 176-217 (250)
175 1u5t_B Defective in vacuolar p 60.5 1 4.4E-05 22.9 -0.8 51 29-79 94-152 (169)
176 2pi2_A Replication protein A 3 60.5 1.5 6.2E-05 22.1 0.0 49 32-80 205-258 (270)
177 2qc0_A Uncharacterized protein 60.4 3.5 0.00015 20.1 1.9 49 37-85 300-349 (373)
178 3dkw_A DNR protein; CRP-FNR, H 59.5 6.2 0.00026 18.8 3.1 41 47-88 178-218 (227)
179 1fp2_A Isoflavone O-methytrans 58.9 4.1 0.00017 19.7 2.0 53 36-88 38-97 (352)
180 2hsg_A Glucose-resistance amyl 57.2 7.8 0.00033 18.2 3.3 21 48-68 3-23 (332)
181 1xn7_A Hypothetical protein YH 56.9 8.7 0.00037 18.0 3.5 42 39-80 7-49 (78)
182 3cjd_A Transcriptional regulat 56.6 9.8 0.00041 17.7 3.7 30 37-66 22-51 (198)
183 3crj_A Transcription regulator 54.5 11 0.00047 17.4 4.4 29 37-65 24-52 (199)
184 2l02_A Uncharacterized protein 54.2 11 0.00045 17.5 3.6 39 36-74 10-49 (82)
185 3fx3_A Cyclic nucleotide-bindi 52.6 11 0.00047 17.4 3.4 40 47-88 178-217 (237)
186 3elk_A Putative transcriptiona 52.6 3.4 0.00014 20.2 0.8 44 36-79 16-65 (117)
187 3hta_A EBRA repressor; TETR fa 51.9 12 0.00052 17.1 3.6 30 37-66 38-67 (217)
188 3hhh_A Transcriptional regulat 51.8 7.8 0.00033 18.2 2.5 44 36-79 15-64 (116)
189 2vke_A Tetracycline repressor 51.8 12 0.00052 17.1 3.6 30 37-66 13-42 (207)
190 1q1h_A TFE, transcription fact 51.4 13 0.00053 17.1 3.8 45 36-80 20-66 (110)
191 1v4r_A Transcriptional repress 51.3 1.8 7.4E-05 21.7 -0.8 44 46-89 33-77 (102)
192 3kcc_A Catabolite gene activat 51.2 9 0.00038 17.9 2.8 41 47-88 217-257 (260)
193 2zb9_A Putative transcriptiona 51.0 13 0.00054 17.1 3.6 29 38-66 34-62 (214)
194 2k02_A Ferrous iron transport 50.3 7.2 0.0003 18.4 2.2 37 45-81 14-50 (87)
195 1ui5_A A-factor receptor homol 50.1 13 0.00056 17.0 4.4 30 37-66 19-48 (215)
196 3dpj_A Transcription regulator 50.0 13 0.00056 17.0 4.4 30 37-66 18-47 (194)
197 3f8b_A Transcriptional regulat 49.2 13 0.00055 17.0 3.3 45 36-80 14-66 (116)
198 2dg7_A Putative transcriptiona 48.9 13 0.00055 17.0 3.3 31 37-67 17-47 (195)
199 2i10_A Putative TETR transcrip 48.7 14 0.00059 16.8 4.2 31 37-67 21-51 (202)
200 2o8x_A Probable RNA polymerase 48.6 14 0.00059 16.8 5.0 42 29-70 13-54 (70)
201 1pb6_A Hypothetical transcript 48.4 14 0.00059 16.8 4.2 31 37-67 28-58 (212)
202 3d0s_A Transcriptional regulat 48.2 12 0.00049 17.3 3.0 42 46-88 176-217 (227)
203 3on4_A Transcriptional regulat 47.7 14 0.00061 16.8 3.6 30 37-66 20-49 (191)
204 2ou2_A Histone acetyltransfera 47.7 14 0.00061 16.8 4.0 47 36-85 193-247 (280)
205 2oi8_A Putative regulatory pro 47.7 14 0.00061 16.8 4.3 29 37-65 26-54 (216)
206 2pq8_A Probable histone acetyl 47.5 9.4 0.0004 17.8 2.4 47 36-85 195-243 (278)
207 1qpz_A PURA, protein (purine n 47.4 13 0.00056 17.0 3.1 20 49-68 2-21 (340)
208 3c2b_A Transcriptional regulat 46.8 15 0.00063 16.7 3.6 31 37-67 25-55 (221)
209 1xsv_A Hypothetical UPF0122 pr 46.4 15 0.00064 16.7 5.1 39 32-70 26-64 (113)
210 3kz9_A SMCR; transcriptional r 46.2 15 0.00064 16.6 3.9 30 37-66 27-56 (206)
211 1sgm_A Putative HTH-type trans 46.1 12 0.00051 17.2 2.8 30 37-66 16-45 (191)
212 2rae_A Transcriptional regulat 45.9 15 0.00065 16.6 4.4 31 37-67 27-57 (207)
213 3cdl_A Transcriptional regulat 45.9 15 0.00065 16.6 4.2 30 37-66 19-48 (203)
214 3bqy_A Putative TETR family tr 45.4 16 0.00066 16.6 3.5 30 37-66 12-41 (209)
215 3col_A Putative transcription 45.0 16 0.00067 16.5 3.5 30 37-66 20-49 (196)
216 1s7o_A Hypothetical UPF0122 pr 44.8 16 0.00068 16.5 4.5 38 32-69 23-60 (113)
217 3la7_A Global nitrogen regulat 44.8 15 0.00061 16.7 3.0 41 47-88 193-233 (243)
218 2dg8_A Putative TETR-family tr 44.8 14 0.0006 16.8 3.0 30 37-66 19-48 (193)
219 1jko_C HIN recombinase, DNA-in 44.6 14 0.0006 16.8 2.9 36 32-68 6-42 (52)
220 2g7l_A TETR-family transcripti 44.4 16 0.00069 16.5 3.8 30 37-66 29-58 (243)
221 1xma_A Predicted transcription 44.1 11 0.00046 17.4 2.3 44 36-79 43-94 (145)
222 3kjx_A Transcriptional regulat 43.9 14 0.00057 16.9 2.8 25 45-69 8-32 (344)
223 2oz6_A Virulence factor regula 43.8 16 0.00066 16.6 3.1 41 47-88 164-204 (207)
224 3f0c_A TETR-molecule A, transc 43.5 17 0.00071 16.4 4.4 30 37-66 21-50 (216)
225 2g7s_A Transcriptional regulat 43.5 17 0.00071 16.4 3.6 30 37-66 18-47 (194)
226 1fy7_A ESA1 histone acetyltran 43.5 9.8 0.00041 17.7 2.0 47 36-85 197-245 (278)
227 2zdb_A Transcriptional regulat 43.0 12 0.0005 17.2 2.3 41 47-88 139-179 (195)
228 3hug_A RNA polymerase sigma fa 43.0 17 0.00073 16.3 5.0 39 31-69 37-75 (92)
229 2hyj_A Putative TETR-family tr 42.8 17 0.00073 16.3 3.6 30 37-66 22-51 (200)
230 2o7t_A Transcriptional regulat 42.8 17 0.00073 16.3 3.5 30 37-66 18-47 (199)
231 3ic7_A Putative transcriptiona 42.6 1.3 5.3E-05 22.5 -2.7 44 46-89 33-77 (126)
232 3bru_A Regulatory protein, TET 42.5 18 0.00074 16.3 4.0 29 38-66 41-69 (222)
233 2gqq_A Leucine-responsive regu 42.4 0.68 2.8E-05 23.9 -4.1 48 32-79 11-59 (163)
234 1rkt_A Protein YFIR; transcrip 42.3 18 0.00074 16.3 4.2 30 37-66 22-51 (205)
235 3lhq_A Acrab operon repressor 42.1 18 0.00075 16.3 4.3 31 37-67 24-54 (220)
236 2fd5_A Transcriptional regulat 41.7 13 0.00054 17.1 2.3 29 37-65 17-45 (180)
237 3knw_A Putative transcriptiona 41.1 18 0.00078 16.2 4.3 30 37-66 24-53 (212)
238 3eyi_A Z-DNA-binding protein 1 41.0 11 0.00048 17.3 2.0 44 34-77 10-55 (72)
239 1neq_A DNA-binding protein NER 41.0 16 0.00067 16.5 2.7 40 31-70 6-45 (74)
240 3g7r_A Putative transcriptiona 40.9 19 0.00079 16.2 4.5 30 37-66 45-74 (221)
241 2fq4_A Transcriptional regulat 40.8 19 0.00079 16.2 4.2 31 37-67 22-52 (192)
242 1ufm_A COP9 complex subunit 4; 40.8 14 0.00061 16.8 2.5 44 45-88 28-74 (84)
243 3nnr_A Transcriptional regulat 40.7 19 0.00079 16.1 3.6 30 37-66 15-44 (228)
244 3bqz_B HTH-type transcriptiona 40.2 19 0.00081 16.1 4.4 30 37-66 12-41 (194)
245 2ra5_A Putative transcriptiona 40.1 2.2 9.3E-05 21.2 -1.8 51 36-86 26-79 (247)
246 1z67_A Hypothetical protein S4 39.9 19 0.00081 16.1 4.6 52 30-85 62-113 (135)
247 2opt_A Actii protein; helical 39.5 20 0.00083 16.0 3.6 31 37-67 16-46 (234)
248 2of7_A Putative TETR-family tr 39.5 20 0.00083 16.0 4.2 31 37-67 58-88 (260)
249 2d6y_A Putative TETR family re 39.2 20 0.00084 16.0 4.4 30 37-66 18-47 (202)
250 1vi0_A Transcriptional regulat 38.9 20 0.00085 16.0 3.5 30 37-66 18-47 (206)
251 3gzi_A Transcriptional regulat 38.7 20 0.00085 16.0 3.3 29 38-66 28-56 (218)
252 2xdn_A HTH-type transcriptiona 38.6 20 0.00086 16.0 3.2 30 37-66 21-50 (210)
253 3h5o_A Transcriptional regulat 38.5 5.4 0.00023 19.1 0.0 22 48-69 5-26 (339)
254 2zcm_A Biofilm operon icaabcd 38.4 20 0.00086 15.9 4.2 30 37-66 17-46 (192)
255 2hxo_A Putative TETR-family tr 38.4 13 0.00055 17.0 2.0 29 37-65 26-54 (237)
256 2o3f_A Putative HTH-type trans 38.3 19 0.00081 16.1 2.8 47 30-76 17-68 (111)
257 2eh3_A Transcriptional regulat 38.3 21 0.00087 15.9 4.4 30 37-66 12-41 (179)
258 2ras_A Transcriptional regulat 38.2 21 0.00087 15.9 3.8 30 37-66 21-50 (212)
259 3lwj_A Putative TETR-family tr 38.0 21 0.00088 15.9 4.2 30 37-66 22-51 (202)
260 2id3_A Putative transcriptiona 37.9 21 0.00088 15.9 3.7 30 37-66 50-79 (225)
261 3bni_A Putative TETR-family tr 37.9 21 0.00088 15.9 4.2 30 37-66 53-82 (229)
262 2zcw_A TTHA1359, transcription 37.4 19 0.00079 16.1 2.7 40 47-87 146-185 (202)
263 2guh_A Putative TETR-family tr 37.1 22 0.00091 15.8 3.4 31 37-67 49-79 (214)
264 2np5_A Transcriptional regulat 36.9 22 0.00091 15.8 3.7 30 37-66 19-48 (203)
265 3fiw_A Putative TETR-family tr 36.9 22 0.00091 15.8 3.2 30 37-66 35-64 (211)
266 3dcf_A Transcriptional regulat 36.9 22 0.00091 15.8 4.1 29 38-66 42-70 (218)
267 2ibd_A Possible transcriptiona 36.7 22 0.00092 15.8 4.2 30 37-66 24-53 (204)
268 1o5l_A Transcriptional regulat 36.6 6 0.00025 18.8 0.0 40 47-87 164-203 (213)
269 3kkc_A TETR family transcripti 36.4 16 0.00067 16.5 2.2 29 38-66 23-51 (177)
270 3bhq_A Transcriptional regulat 36.4 22 0.00093 15.8 4.3 30 37-66 22-51 (211)
271 2gen_A Probable transcriptiona 36.2 22 0.00094 15.7 4.3 30 37-66 17-46 (197)
272 2fbq_A Probable transcriptiona 36.2 22 0.00094 15.7 4.2 30 37-66 17-46 (235)
273 2wui_A MEXZ, transcriptional r 36.2 22 0.00094 15.7 4.0 30 37-66 21-50 (210)
274 1t56_A EThr repressor; helix-t 36.1 22 0.00094 15.7 3.3 29 38-66 35-63 (216)
275 3h5t_A Transcriptional regulat 36.0 20 0.00086 15.9 2.7 23 46-68 8-30 (366)
276 1z0x_A Transcriptional regulat 35.9 23 0.00095 15.7 3.2 30 37-66 15-45 (220)
277 2nx4_A Transcriptional regulat 35.9 23 0.00095 15.7 4.2 30 37-66 20-49 (194)
278 2f07_A YVDT; helix-turn-helix, 35.6 23 0.00096 15.7 5.4 30 37-66 20-49 (197)
279 3iwf_A Transcription regulator 35.6 23 0.00096 15.7 3.1 46 31-76 14-64 (107)
280 2yve_A Transcriptional regulat 35.5 23 0.00096 15.7 4.2 30 37-66 14-43 (185)
281 1zk8_A Transcriptional regulat 35.3 23 0.00097 15.7 3.2 29 37-65 18-46 (183)
282 2o20_A Catabolite control prot 34.5 6.8 0.00028 18.5 0.0 23 47-69 5-27 (332)
283 2bnm_A Epoxidase; oxidoreducta 34.2 24 0.001 15.6 3.1 30 38-67 14-43 (198)
284 3o60_A LIN0861 protein; PSI, M 34.1 24 0.001 15.6 3.3 23 44-66 37-59 (185)
285 3dv8_A Transcriptional regulat 34.0 24 0.001 15.5 3.0 41 47-88 169-209 (220)
286 3dbi_A Sugar-binding transcrip 33.5 7.2 0.0003 18.4 0.0 22 48-69 4-25 (338)
287 2gfn_A HTH-type transcriptiona 33.5 25 0.001 15.5 3.6 30 37-66 19-48 (209)
288 2rek_A Putative TETR-family tr 33.3 25 0.001 15.5 3.4 28 38-66 27-54 (199)
289 3mvp_A TETR/ACRR transcription 33.3 25 0.001 15.5 3.5 29 38-66 37-65 (217)
290 3ljl_A Transcriptional regulat 33.2 15 0.00065 16.6 1.7 30 37-66 24-53 (156)
291 2zfw_A PEX; five alpha-helices 33.1 22 0.00091 15.8 2.4 60 30-89 38-115 (148)
292 3cwr_A Transcriptional regulat 33.1 25 0.0011 15.5 3.6 30 37-66 27-56 (208)
293 3b81_A Transcriptional regulat 32.9 25 0.0011 15.4 4.3 28 38-65 22-49 (203)
294 1r71_A Transcriptional repress 32.6 24 0.001 15.6 2.5 46 34-79 39-84 (178)
295 2pz9_A Putative regulatory pro 32.6 18 0.00075 16.3 1.9 44 37-80 40-93 (226)
296 2qco_A CMER; transcriptional r 32.4 11 0.00047 17.4 0.8 29 37-65 23-51 (210)
297 2hyt_A TETR-family transcripti 32.4 26 0.0011 15.4 3.4 31 37-67 22-52 (197)
298 3ccy_A Putative TETR-family tr 32.0 19 0.0008 16.1 2.0 29 37-65 24-52 (203)
299 3f2g_A Alkylmercury lyase; MER 31.3 27 0.0011 15.3 4.6 49 34-85 22-71 (220)
300 2jj7_A Hemolysin II regulatory 31.2 19 0.00082 16.1 1.9 31 37-67 17-47 (186)
301 2oer_A Probable transcriptiona 31.2 27 0.0011 15.3 2.8 28 39-66 36-63 (214)
302 2k9s_A Arabinose operon regula 31.2 27 0.0011 15.3 4.3 32 39-70 12-43 (107)
303 3dew_A Transcriptional regulat 31.0 27 0.0012 15.3 3.6 30 37-66 18-47 (206)
304 3npi_A TETR family regulatory 31.0 20 0.00086 16.0 2.0 31 37-67 28-58 (251)
305 2g3b_A Putative TETR-family tr 31.0 20 0.00083 16.0 1.9 31 37-67 13-43 (208)
306 2iai_A Putative transcriptiona 30.9 28 0.0012 15.3 3.7 32 35-66 38-69 (230)
307 3bjb_A Probable transcriptiona 30.4 28 0.0012 15.2 3.5 30 38-67 33-62 (207)
308 1wi9_A Protein C20ORF116 homol 30.4 28 0.0012 15.2 3.1 54 39-92 12-69 (72)
309 3geu_A Intercellular adhesion 30.4 15 0.00064 16.6 1.3 30 37-66 13-42 (189)
310 1je8_A Nitrate/nitrite respons 30.2 28 0.0012 15.2 6.0 43 28-71 18-60 (82)
311 3he0_A Transcriptional regulat 30.1 28 0.0012 15.2 4.4 30 37-66 21-50 (196)
312 2zcx_A SCO7815, TETR-family tr 29.8 29 0.0012 15.1 4.4 30 37-66 33-62 (231)
313 2id6_A Transcriptional regulat 29.7 16 0.00067 16.5 1.3 31 37-67 15-45 (202)
314 2jt1_A PEFI protein; solution 29.5 26 0.0011 15.4 2.3 39 45-83 22-60 (77)
315 3egq_A TETR family transcripti 29.5 28 0.0012 15.3 2.4 29 38-66 15-43 (170)
316 2qib_A TETR-family transcripti 29.3 29 0.0012 15.1 3.4 30 37-66 23-52 (231)
317 3c07_A Putative TETR-family tr 28.9 30 0.0013 15.1 4.1 29 38-66 52-80 (273)
318 3g1l_A Transcriptional regulat 28.7 24 0.00099 15.6 2.0 27 40-66 57-83 (256)
319 3frq_A Repressor protein MPHR( 28.3 22 0.00093 15.8 1.8 31 37-67 18-48 (195)
320 2hxi_A Putative transcriptiona 27.7 31 0.0013 14.9 3.0 30 37-66 39-68 (241)
321 1t6s_A Conserved hypothetical 27.7 31 0.0013 14.9 4.8 48 43-90 18-73 (162)
322 3e3m_A Transcriptional regulat 27.5 11 0.00044 17.5 0.0 25 46-70 11-35 (355)
323 3nrg_A TETR family transcripti 27.2 18 0.00077 16.2 1.2 29 37-65 23-51 (217)
324 2qko_A Possible transcriptiona 26.9 28 0.0012 15.2 2.1 30 37-66 38-67 (215)
325 3e7q_A Transcriptional regulat 26.9 26 0.0011 15.4 1.9 29 38-66 25-53 (215)
326 2qtq_A Transcriptional regulat 26.7 33 0.0014 14.8 4.3 30 37-66 26-55 (213)
327 2q24_A Putative TETR family tr 26.6 33 0.0014 14.8 4.1 29 37-66 25-53 (194)
328 2iu5_A DHAS, hypothetical prot 26.6 20 0.00086 15.9 1.4 29 37-65 23-51 (195)
329 3pas_A TETR family transcripti 25.9 27 0.0011 15.3 1.9 30 37-66 18-47 (195)
330 3eup_A Transcriptional regulat 25.7 21 0.00087 15.9 1.3 29 37-65 21-49 (204)
331 2gmg_A Hypothetical protein PF 25.5 35 0.0015 14.7 4.4 55 34-93 11-69 (105)
332 3l4g_A Phenylalanyl-tRNA synth 25.5 12 0.0005 17.2 0.0 40 36-75 7-48 (508)
333 2e1n_A PEX, period extender; c 25.0 35 0.0015 14.7 2.9 48 32-79 30-86 (138)
334 3ke2_A Uncharacterized protein 24.8 36 0.0015 14.6 2.8 51 42-92 28-85 (117)
335 3mzy_A RNA polymerase sigma-H 24.8 36 0.0015 14.6 4.4 32 39-70 116-147 (164)
336 2vpr_A Tetracycline resistance 24.6 24 0.001 15.5 1.4 29 37-65 14-42 (207)
337 2p7v_B Sigma-70, RNA polymeras 24.4 36 0.0015 14.6 5.8 38 31-68 5-46 (68)
338 2qwt_A Transcriptional regulat 24.2 37 0.0015 14.6 4.1 29 37-66 23-51 (196)
339 3him_A Probable transcriptiona 24.0 24 0.001 15.6 1.3 28 38-65 27-54 (211)
340 2w53_A Repressor, SMet; antibi 23.8 37 0.0016 14.5 4.2 29 37-65 21-49 (219)
341 2zo4_A Metallo-beta-lactamase 23.8 29 0.0012 15.1 1.7 44 36-80 255-308 (317)
342 1jye_A Lactose operon represso 23.5 14 0.00058 16.9 0.0 22 48-69 4-25 (349)
343 3f1b_A TETR-like transcription 23.4 38 0.0016 14.5 4.4 30 37-66 24-53 (203)
344 3jvd_A Transcriptional regulat 23.0 14 0.0006 16.8 0.0 24 47-70 6-29 (333)
345 2fna_A Conserved hypothetical 22.8 39 0.0016 14.4 3.7 55 33-88 289-348 (357)
346 3on2_A Probable transcriptiona 22.8 27 0.0011 15.3 1.4 29 37-65 22-50 (199)
347 2h2z_A PP1AB, ORF1AB, replicas 22.8 39 0.0017 14.4 3.9 36 42-77 236-277 (306)
348 3kw6_A 26S protease regulatory 21.7 41 0.0017 14.3 4.7 45 29-73 1-51 (78)
349 1u78_A TC3 transposase, transp 21.4 42 0.0018 14.3 4.7 37 32-69 7-44 (141)
350 2b0l_A GTP-sensing transcripti 21.0 34 0.0014 14.7 1.6 47 38-84 32-80 (102)
351 3kkd_A Transcriptional regulat 20.9 28 0.0012 15.2 1.2 29 37-65 45-73 (237)
352 1kyz_A COMT, caffeic acid 3-O- 20.7 44 0.0018 14.2 3.2 49 35-83 40-96 (365)
No 1
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=99.42 E-value=1.1e-13 Score=92.97 Aligned_cols=62 Identities=44% Similarity=0.569 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 68879998999999985889889999999829999999999999999417986479868981
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
....+.+.++++|+++|+.+|+++|+|+.++|+++++++++|++|||+|+|+++|||+|+|+
T Consensus 321 ~~~~~~~~~~~~il~~l~~~~~~~d~l~~~~gl~~~~~~~~L~~LEl~G~v~~~~G~~y~l~ 382 (382)
T 3maj_A 321 PEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGGSLVSLS 382 (382)
T ss_dssp --CCCCTTHHHHHHHHCCSSCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECTTSEEEC-
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf 77798986899999866999988999999989099999999999997596773499179829
No 2
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.98 E-value=0.00085 Score=39.60 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=47.9
Q ss_pred HHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999858--898899999998299999999999999994179864798689813
Q gi|254780305|r 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 38 ~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.||++++ ..|..+.+|++++|+|.++++.+|-.|+-.|+|.+.++|+|++..
T Consensus 12 ~IL~~~a~~~~~~tl~eia~~lglpksT~~Rll~tL~~~G~l~~~~~~~Y~lG~ 65 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGY 65 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHH
T ss_conf 999999738999899999998791999999999999977986532553201324
No 3
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.78 E-value=0.0009 Score=39.47 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred HHHH-HHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8999-99998588--98899999998299999999999999994179864798689813
Q gi|254780305|r 34 CERV-RIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 34 ~~~~-~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
-++. .||++++. .+..+-||++++|++.++++.+|-.|+=.|+|.+.+.|+|+|..
T Consensus 22 l~Ral~ILe~l~~~~~~~~l~eia~~lgl~~sT~~RlL~tL~~~G~l~~~~~g~Y~lG~ 80 (260)
T 2o0y_A 22 VTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYSLGP 80 (260)
T ss_dssp HHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCEECCH
T ss_conf 99999999999747999899999999791999999999999978878980554265378
No 4
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=96.70 E-value=0.0017 Score=37.92 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=44.4
Q ss_pred HHHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEE
Q ss_conf 99999985--889889999999829999999999999999417-986479868
Q gi|254780305|r 36 RVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v 85 (95)
+.+|++.| +..++++.+|+++.|++..++..-|-+||-.|. |.+..|||.
T Consensus 23 ~~~Il~~L~~~~~~vs~~eLa~~l~vS~~TIrrdi~~L~~~G~~i~~~~gGy~ 75 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYV 75 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf 99999999985996769999999798999999999999977996898469889
No 5
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=96.22 E-value=0.0044 Score=35.76 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 998999999985--88988999999982999999999999999941798647
Q gi|254780305|r 32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 32 ~~~~~~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
.+..+.+|+..| +.+|+++++|++.+|++.+.++..+-.|+=+|.|.+.+
T Consensus 24 l~~~~~~il~~L~~~~~p~t~~eLa~~l~is~s~vs~~l~~L~~~GlV~r~~ 75 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8999999999999769892999999998968857999999999889989853
No 6
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=96.06 E-value=0.0056 Score=35.18 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=46.3
Q ss_pred HHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999858--898899999998299999999999999994179864798689813
Q gi|254780305|r 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 38 ~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.||++++ ..+..+-+|++++|++.++++.+|-.|+=.|++.+- +|+|++..
T Consensus 18 ~IL~~~~~~~~~~~~~eia~~~gl~~st~~RlL~tL~~~G~l~~~-~~~Y~lG~ 70 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS-GGRWSLTP 70 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECG
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEECC
T ss_conf 999999847999899999998793999999999999973865322-98378550
No 7
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=95.87 E-value=0.013 Score=33.26 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9989999999858898899999998299999999999999994179864
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.++.+.+||..|...|.++.+|++.+|++.+.++-.|-.|+=+|+|...
T Consensus 18 ~~~~R~~IL~~L~~~~~t~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999998299679999999891988999999999888982899
No 8
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=95.85 E-value=0.0059 Score=35.06 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999985889889999999829999999999999999417986
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
++.+.+|+..|..+|.++.+|++.+|++.+.|+..|-.||=.|.|..
T Consensus 14 ~~~R~~Il~~L~~~~~~~~ela~~l~is~~~v~~HL~~L~~~Glv~~ 60 (202)
T 2p4w_A 14 NETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIES 60 (202)
T ss_dssp SHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999739998999999989099899999999997895179
No 9
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=95.78 E-value=0.0073 Score=34.57 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99998588--988999999982999999999999999941798647986898137
Q gi|254780305|r 38 RIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 38 ~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95)
.||++++. .+..+-+|++.+|++.++++.+|-.|+=.|+|.+- ++.|+++..
T Consensus 25 ~ILe~la~~~~~lsl~eia~~l~l~kst~~RlL~tL~~~G~l~~~-~~~Y~lG~~ 78 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD-GSAFWLTPR 78 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES-SSEEEECGG
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCCCCCCHH
T ss_conf 999999737999799999999794999999999999987995306-973203478
No 10
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=95.78 E-value=0.012 Score=33.47 Aligned_cols=59 Identities=17% Similarity=0.001 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEE
Q ss_conf 8799989999999858-898899999998299999999999999994179864---7986898
Q gi|254780305|r 29 PEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGKVSL 87 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~---pGg~v~l 87 (95)
.-..+..+..||.+|- ..+..+.+|++.++++.+.|+.+|-.||=+|+|.|. .|+++..
T Consensus 15 ~~glt~~e~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~~~~~~~~~~ 77 (109)
T 1sfx_A 15 KLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYI 77 (109)
T ss_dssp HTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEE
T ss_pred HCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 859999999999999804888799999997567018999999999599979874257886554
No 11
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.61 E-value=0.0071 Score=34.62 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 998999999985889889999999829999999999999999417986479868
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.++.+.+|+..|...|..+.+|++.+|++.+.++-.|-.|+=+|+|....-|+.
T Consensus 19 ~dp~Rl~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~aGLV~~~r~Gr~ 72 (114)
T 2oqg_A 19 SDETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGRE 72 (114)
T ss_dssp TCHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCE
T ss_conf 899999999999819928999998888898899999999998898803644898
No 12
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.61 E-value=0.012 Score=33.36 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 99899999998588988999999982999999999999999941798647986---8981
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
.++.+.+|+..|...+..+-+|++.+|++.+.|+-.|-.|+=+|.|....-|+ |++.
T Consensus 21 ~~p~Rl~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 80 (98)
T 3jth_A 21 ANERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLK 80 (98)
T ss_dssp CSHHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEEC
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 999999999999729937999999988595678899999998894269987689999988
No 13
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=95.60 E-value=0.0076 Score=34.47 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99989999999858--898899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+.+||..|. .+|++.++|++.+|++.+.|+..|-.||=+|+|.+....
T Consensus 18 gLs~~~~~iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~~GlV~r~~~~ 72 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 9599999999999975989899999999897885899999999988997985178
No 14
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.54 E-value=0.015 Score=32.94 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98999999985889889999999829999999999999999417986479868
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
++.+.+|+..|...+..+-+|++.+|++.+.|+-.|-.|+-+|+|...--|+.
T Consensus 45 dp~Rl~Il~~L~~~~~~v~ela~~l~~s~stvS~HL~~L~~aGlV~~~r~Gr~ 97 (122)
T 1r1t_A 45 DPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRH 97 (122)
T ss_dssp CHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCE
T ss_conf 99999999999829976999999989198889999999998893368987378
No 15
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=95.52 E-value=0.014 Score=33.07 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89999999858898899999998299999999999999994179864798689813
Q gi|254780305|r 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 34 ~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+-.|+++|...|.++++|+.++|++...+...|--|.-.|++.....|+|+++-
T Consensus 25 A~eL~lfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~gil~~~~~g~y~~t~ 80 (332)
T 3i53_A 25 AATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTE 80 (332)
T ss_dssp HHHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECT
T ss_pred HHHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEECCH
T ss_conf 99879888973799999999988790989999999999978968970882683488
No 16
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.45 E-value=0.0055 Score=35.23 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9989999999858898899999998299999999999999994179864798689
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.++.+.+|+..|...|.++.+|++.+|++.+.|+-.|-.|+=+|+|....-|+..
T Consensus 16 a~p~R~~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~aGlV~~~r~Gr~~ 70 (118)
T 3f6o_A 16 ADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVR 70 (118)
T ss_dssp TSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEE
T ss_conf 8999999999998099479999999891999999999999988986267658888
No 17
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.29 E-value=0.0078 Score=34.42 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 998999999985889889999999829999999999999999417986479868
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.++.+.+|+..|...+..+.+|++.+|++.+.|+-.|-.|+=+|+|....-|+.
T Consensus 56 adPtRl~IL~~L~~g~~tv~eLa~~l~is~stvS~HL~~L~~aGLV~~~r~Gr~ 109 (151)
T 3f6v_A 56 AEPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp TSHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCE
T ss_conf 899999999999809938999999989199999999998998897588987798
No 18
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=95.23 E-value=0.0076 Score=34.46 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 99899999998588988999999982999999999999999941798647986---8981
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
.++.+.+|+..|...|.++-+|+..+|++.+.++-.|-.|+-.|+|....-|+ |++.
T Consensus 19 ~dptRl~Il~~L~~~~~~v~ela~~lgis~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 78 (118)
T 2jsc_A 19 ADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALA 78 (118)
T ss_dssp SSHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEES
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 899999999999819928999999989299999999999998896279988798999978
No 19
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=95.05 E-value=0.024 Score=31.77 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 998999999985889-88999999982999999999999999941798647986---8981
Q gi|254780305|r 32 TQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
.++.+.+|+..|... +..+.+|++.+|++.+.++-.|-.|+=+|+|....-|+ |++.
T Consensus 22 ~~p~Rl~Il~~L~~~~~~~v~eLa~~l~~s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 82 (99)
T 3cuo_A 22 SHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIK 82 (99)
T ss_dssp CSHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEEC
T ss_pred CCHHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 7999999999985899907999774558598799999999998894169988899999989
No 20
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.03 E-value=0.015 Score=32.83 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9998999999985889889999999829999999999999999417986479868
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
-.++.+.+|+..|...+..+-+|+...|++.+.++-.|-.|+-+|+|....-|+.
T Consensus 23 L~~p~Rl~Il~~L~~~~~~v~el~~~l~~s~s~vS~HL~~L~~aglV~~~r~G~~ 77 (106)
T 1r1u_A 23 LGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQS 77 (106)
T ss_dssp TCSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCE
T ss_conf 6999999999999829967999999876586589999999998893489988788
No 21
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=94.92 E-value=0.019 Score=32.30 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999985889889999999829999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+-.|+++|...|.++++|++++|++...+...|--|.-.|++.+...|+|+++
T Consensus 41 eLglfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~e~~~g~y~~t 93 (360)
T 1tw3_A 41 TLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp HTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEEECC
T ss_conf 87985897469989999998869198999999999986796998289848569
No 22
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.92 E-value=0.038 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf 7999899999998588-98899999998299999999999999994179864798-68981
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG-KVSLT 88 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg-~v~l~ 88 (95)
...+..+-+||..|.. .+.++.+|++++|++.++++..|-.||=+|+|.+-..+ +|+|+
T Consensus 148 ~~ls~~~~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~GlV~r~~r~~~v~LT 208 (244)
T 2wte_A 148 RDYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELN 208 (244)
T ss_dssp SCCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEC
T ss_conf 2999999999999997799899999999797988999999999988999983782279987
No 23
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=94.91 E-value=0.038 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9989999999858898899999998299999999999999994179864798689813
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
.++.+.+|+..|. ++..+.+|+..+|++.+.++-.|-.|+=+|+|... ++.|+++.
T Consensus 29 s~p~R~~IL~~L~-~~~~~~eLa~~lg~s~stvs~HL~~L~~aGLV~~~-~~~y~lt~ 84 (96)
T 1y0u_A 29 TNPVRRKILRMLD-KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV-GERWVVTD 84 (96)
T ss_dssp SCHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECT
T ss_pred CCHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCEEEECC
T ss_conf 7989999999835-79979999999891998999999999988967984-79899865
No 24
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.90 E-value=0.054 Score=29.88 Aligned_cols=55 Identities=5% Similarity=0.015 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8799989999999858898899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
....+..+-.||..++.+|..+-+|+...+++.+.++.++-.||=+|+|.+.++.
T Consensus 32 ~~~lt~~q~~vL~~i~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~g~v~r~~~~ 86 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp TTTCCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 7697999999999998599199999999897986999999999868897860787
No 25
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=94.55 E-value=0.047 Score=30.21 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=47.2
Q ss_pred HHHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf 9999999858----898899999998299999999999999994179864798--6898137
Q gi|254780305|r 35 ERVRIKQSLN----NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG--KVSLTMH 90 (95)
Q Consensus 35 ~~~~Il~~L~----~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg--~v~l~~~ 90 (95)
.+++|++.|. ..++..-+|++.+|++-..|...|..|+=+|.|.+.+|. .-+|+.-
T Consensus 11 ~e~~Il~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~l~~~ 72 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECCC
T ss_conf 99999999997379975219999999698888989999999987986406998996063788
No 26
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=94.49 E-value=0.035 Score=30.86 Aligned_cols=54 Identities=9% Similarity=-0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999985889889999999829999999999999999417986479868981
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.+-.|+++|...|.++++|++++|++...+...|--|.-.|.+.+..+|.|+++
T Consensus 29 ~elglfd~L~~g~~t~~eLA~~~g~~~~~l~~lL~~L~~~gll~~~~~~~y~~t 82 (334)
T 2ip2_A 29 TRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (334)
T ss_dssp HHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEECC
T ss_conf 987988998679999999998879198999999999996897378478835367
No 27
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=94.40 E-value=0.03 Score=31.29 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999999858898899999998299999999999999994179864798689813
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+-.|+++|...|.++++|++++|++...+...|--|.-.|++.+ .+|+|+++-
T Consensus 44 eLglfd~L~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~~-~~g~y~~t~ 96 (348)
T 3lst_A 44 AVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFALTD 96 (348)
T ss_dssp HHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECT
T ss_pred HCCHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-ECCEEECCH
T ss_conf 88962897189989999998879098999999999997898894-298563378
No 28
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=94.19 E-value=0.019 Score=32.28 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 989999999858-8988999999982999999999999999941798647
Q gi|254780305|r 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
++.+-.|+..|. .++..+.+|++.+|++.+.++..|-.||=+|+|.+..
T Consensus 15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~ 64 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99999999998518998399999998919989999999998589069987
No 29
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.15 E-value=0.037 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99899999998588--9889999999829999999999999999417986479868981
Q gi|254780305|r 32 TQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 32 ~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.+..|++||+.|.. .|+.+.+|++.|+.|-.++..+|-.|.-+|++.+..-...+|+
T Consensus 8 ~qd~EQrILq~L~e~G~~~~a~~La~k~~VPKk~lNrVLY~L~k~gKl~~~~P~~W~l~ 66 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 75789999999997588103999999978888899999999986665356799744447
No 30
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=94.15 E-value=0.021 Score=32.12 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98999999985889889999999829999999999999999417986479868
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
++.+.+|+..|...+..+-+|+..+|++.+.|+-.|-.|+=+|+|.....|+.
T Consensus 24 dp~Rl~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~aglV~~~r~G~~ 76 (108)
T 2kko_A 24 NGRRLQILDLLAQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTR 76 (108)
T ss_dssp TSTTHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCE
T ss_conf 99999999999809957999999989098889999999998893479988688
No 31
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=93.84 E-value=0.09 Score=28.67 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999985889889999999829999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+-.|+++|...|.++++|+.++|++...+...|--|.-.|++.+. +|.|+++
T Consensus 53 eLglfd~L~~gp~T~~eLA~~~g~~~~~l~rlL~~L~~~Gll~~~-~~~~~~t 104 (359)
T 1x19_A 53 ELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE-DGKWSLT 104 (359)
T ss_dssp HHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCEEECC
T ss_conf 869989974799999999999790999999999999977958974-9978538
No 32
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.75 E-value=0.051 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=44.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-----EEEEE
Q ss_conf 99999858898899999998299999999999999994179864798-----68981
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG-----KVSLT 88 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg-----~v~l~ 88 (95)
-.|+..|...+..+++|.+..|++...++..|-+||-.|.|.+.+.. .|+|+
T Consensus 27 ~~Il~~l~~G~~RF~el~~~lgis~~~Ls~rL~~L~~~GLv~r~~~~~p~r~eY~LT 83 (146)
T 2f2e_A 27 MLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLT 83 (146)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEC
T ss_conf 999999973996799999880977899999999999889806766899981588468
No 33
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.73 E-value=0.051 Score=29.99 Aligned_cols=57 Identities=16% Similarity=0.009 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9899999998588-98899999998299--999999999999994179864798689813
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGI--EAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl--~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
..-..+||+.|.. .+...-+|+..+|+ +.+.|+.-|-.|+=.|+|.+...|+|.|+-
T Consensus 12 ~~~D~rILE~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve~~g~G~Y~iT~ 71 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITE 71 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECH
T ss_conf 601999999999849999999999868884799999999999878795666870079896
No 34
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.38 E-value=0.071 Score=29.22 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf 989999999858-8988999999982999999999999999941798647986---8981
Q gi|254780305|r 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95)
Q Consensus 33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95)
++.+.+|+..|. ..+..+.+|++..|++.+.++-.|-.|+=+|+|.....|+ |+|.
T Consensus 41 dp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlV~~~r~Gr~~~Y~l~ 100 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLG 100 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 999999999998788927999999988873269999999998890489998788999988
No 35
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.32 E-value=0.068 Score=29.32 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHHH---CC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEE
Q ss_conf 999999985---88-98899999998299999999999999994179864798--68981
Q gi|254780305|r 35 ERVRIKQSL---NN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG--KVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L---~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg--~v~l~ 88 (95)
-+++|++.| |. .++..-+|++.+|++-..|..+|..|+=+|.|.+.+|+ +-+|+
T Consensus 15 ~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~~PP~W~lt 74 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 74 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEEC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEC
T ss_conf 899999999965898760299999996988888899999999878953069989932605
No 36
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.07 E-value=0.019 Score=32.32 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 989999999858898899999998299999999999999994179864
Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
++.+.+|+..|..+|.++-+|+..+|++.+.++-.|=.||=+|+|...
T Consensus 11 ~~~R~~Il~~L~~~~~~~~ela~~l~~s~~~v~~hL~~L~~aglv~~~ 58 (232)
T 2qlz_A 11 NKVRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSY 58 (232)
T ss_dssp SHHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999998189779999999891988999999999868986998
No 37
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=92.96 E-value=0.044 Score=30.34 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99989999999858898899999998299999999999999994179864
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+..+-.||..++..|+.+-+|+++.+++.+.|+.++-.||=+|+|.+.
T Consensus 35 glt~~q~~iL~~l~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~ 84 (151)
T 3kp7_A 35 GISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp TCCHHHHHHHHHHHHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999986289999999999896888999999999888983014
No 38
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.93 E-value=0.042 Score=30.48 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99899999998588988999999982999999999999999941798647986
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
.+..+-.||..++..|.++-+|++..|++.+.++.++-.||=+|+|.+.+...
T Consensus 35 lt~~q~~iL~~i~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~Glv~r~~~~~ 87 (144)
T 3f3x_A 35 LSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSK 87 (144)
T ss_dssp CCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 99999999999991996999999998978868999999999889844447788
No 39
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.80 E-value=0.054 Score=29.88 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588--98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.||..|.. +++.+.+|++..+++.+.++.++-.||=+|+|.|.+..
T Consensus 44 glt~~q~~vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~Glv~r~~~~ 98 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9299999999999868999989999999896885899999999867987987768
No 40
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=92.70 E-value=0.11 Score=28.24 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99998588-9889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.||..... ..+.+.+|++..|++.+.|+.+|-.|+-+|.|.+.+.|.|.|+
T Consensus 12 ~I~~l~~~~~~v~~~dlA~~L~vs~~sv~~~lk~L~~~GlI~~~~~~~i~LT 63 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLT 63 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 9999985379886999999969887899999999985798440699866777
No 41
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=92.31 E-value=0.11 Score=28.20 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHCCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999858898-8999999982999999999999999941798
Q gi|254780305|r 31 YTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p-~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~ 78 (95)
.+|.-..+|++.|..++ .++.+|++++|++.+.|..-+-.||=.|.|+
T Consensus 14 ~LD~~D~~IL~~Lq~d~R~s~~eIA~~lgls~~tv~~Ri~rLe~~GvI~ 62 (171)
T 2ia0_A 14 HLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 7499999999999984899999999998909999999999999789647
No 42
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.30 E-value=0.047 Score=30.22 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9989999999858-89889999999829999999999999999417986479868
Q gi|254780305|r 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 32 ~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.++.+.+|+..|. .++..+.+|++..|++.+.++-.|-.|+ +|.|...--|+.
T Consensus 25 ~~p~Rl~Il~~L~~~~~~~v~el~~~l~~s~stvS~HL~~L~-aglV~~~r~G~~ 78 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR-GKVLKRNRQGLE 78 (99)
T ss_dssp CSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB-TTTBEEEEETTE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCCEEEEECCE
T ss_conf 899999999999778992799989988849769999999999-298738987588
No 43
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=92.28 E-value=0.076 Score=29.09 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEE
Q ss_conf 999999858898899999998299999999999999994179864-79868981
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH-PEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~-pGg~v~l~ 88 (95)
+-.|++.|...|.++++|++++|++...+...|--|.-.|++.+. .+|+|+++
T Consensus 60 eLglfd~L~~gp~T~~eLA~~~g~~~~~l~rlLr~L~a~Gll~~~~~~~~~~~t 113 (369)
T 3gwz_A 60 ELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQN 113 (369)
T ss_dssp HHTTGGGGTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEECC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 888779986699999999988791989999999999978927886888764578
No 44
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=92.26 E-value=0.14 Score=27.63 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 87999899999998588-988999999982999999999999999941798647986
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
+-.....+-.|+..|.. .++.+-+|++..+++.+.++.++-.||-+|+|.+.+...
T Consensus 31 ~~glt~~q~~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~ 87 (140)
T 3hsr_A 31 EYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEK 87 (140)
T ss_dssp GGTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 859999999999999867998999999998978647999999997279779821588
No 45
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=92.05 E-value=0.081 Score=28.93 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.||..|.. .++.+.+|++..|++.+.++.++-.||=+|+|.+.++.
T Consensus 42 ~LT~~q~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 989999999999996799699999999896988999999998164427865337
No 46
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=91.99 E-value=0.12 Score=28.04 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.||..|+. .++.+.+|++.++++.+.++.++-.||=+|+|.+.++-
T Consensus 50 gLt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~ 103 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 979999999999997799899999999897887999999999838977983258
No 47
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.91 E-value=0.26 Score=26.18 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999985889-889999999829999999999999999417986
Q gi|254780305|r 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 33 ~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
|.-..+|+++|..+ -+++-+|++++|++.++|..-+-.||=+|.|.+
T Consensus 2 D~~D~~Il~~L~~d~R~s~~eia~~lg~s~~tv~~Ri~~L~~~GvI~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 889999999999848999999999989399999999999996898555
No 48
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=91.58 E-value=0.17 Score=27.14 Aligned_cols=51 Identities=24% Similarity=0.190 Sum_probs=45.6
Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999858-89889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.|+.... ...+.+.+|++..|++.+.|..+|-.|+-+|.|..-++|.|.|+
T Consensus 44 ~Iy~L~~~~~~vr~~dIA~~L~vs~~sVs~~l~~L~~~GlI~~~~~~~i~LT 95 (155)
T 2h09_A 44 LISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLT 95 (155)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEEC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEC
T ss_conf 9999985389770999999969897899999999977889875499875589
No 49
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=91.31 E-value=0.26 Score=26.16 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999858--89889999999829999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+-.|+++|. .+|+++++|+.++|++...+...|--|.-.|.+.+. +|+|+++
T Consensus 37 ~lgifd~L~~~~~~~t~~eLa~~~g~~~~~l~rlL~~L~~~g~l~~~-~~~y~lt 90 (363)
T 3dp7_A 37 KFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRYVLA 90 (363)
T ss_dssp HTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEEEEC
T ss_pred HCCHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE-CCCEEEC
T ss_conf 87978897418999899999988790999999999999858918985-9928778
No 50
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=91.31 E-value=0.12 Score=27.96 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
...+..+-.|+..|.. .++.+-+|++.++++.+.|+.++-.||=+|+|.+.++.
T Consensus 34 ~glt~~q~~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~~glv~r~~~~ 88 (140)
T 2nnn_A 34 NGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADP 88 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 8989999999999998799099999998785735299999999738966972279
No 51
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=91.22 E-value=0.15 Score=27.51 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=44.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-C-CEEEEE
Q ss_conf 9999998588988999999982999999999999999941798647-9-868981
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP-E-GKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p-G-g~v~l~ 88 (95)
+-.|+++|...|.++++|++++|++...+...|--|.-.|++.+.. + ++|+.+
T Consensus 38 eL~lfd~L~~g~~s~~eLA~~~g~~~~~l~rlL~~L~a~Gll~~~~~~~~~~~~t 92 (374)
T 1qzz_A 38 TLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPT 92 (374)
T ss_dssp HTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEEC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEECCC
T ss_conf 8898889617998999999886919999999999999789589877888423656
No 52
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.22 E-value=0.15 Score=27.52 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
...+..+-.||..|+. .++++.+|++..+++.+.++.++-.|+=+|+|.+.+..
T Consensus 33 ~glt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~ 87 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5989999999999998699799999999896998999999999862425520233
No 53
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=91.19 E-value=0.17 Score=27.18 Aligned_cols=54 Identities=6% Similarity=-0.012 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8799989999999858-89889999999829999999999999999417986479
Q gi|254780305|r 29 PEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.-..+..+-.||..|. ..++.+.+|+++.+++.+.++.++-.||=+|+|.+...
T Consensus 37 ~~~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~Gli~r~~~ 91 (150)
T 2rdp_A 37 NYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp TSSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7797999999999999779959999999989688789999999971897798521
No 54
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=91.09 E-value=0.39 Score=25.24 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999858-89889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.|+.... ..++.+.+|++..+++.+.|..++-.|+=+|.|..-..| |.|+
T Consensus 21 aI~~l~~~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~~~~g-i~LT 71 (139)
T 2x4h_A 21 TIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKEDG-VWIT 71 (139)
T ss_dssp HHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE-EEEC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCC-CEEC
T ss_conf 99999975998669999999688907999999999988995450477-1578
No 55
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.05 E-value=0.2 Score=26.75 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 799989999999858--8988999999982999999999999999941798647986
Q gi|254780305|r 30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
...+..+-.||..|. ..++++-+|+++.+++.+.++.++=.||=+|+|.+.+...
T Consensus 31 ~~ls~~q~~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~ 87 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQ 87 (147)
T ss_dssp CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 598999999999999769998999999998979879999999998679668735788
No 56
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.04 E-value=0.23 Score=26.49 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998999999985889-889999999829999999999999999417986
Q gi|254780305|r 31 YTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
++|.--.+|+..|..+ .+++.+|++.+|++.+.|..-+-.||=+|.|.+
T Consensus 24 ~LD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tV~~Ri~rL~~~GiI~~ 73 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 86599999999999838999999999989199999999999984799057
No 57
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=91.01 E-value=0.2 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+-..+..+-.++..|+. .++.+.+|+...+++.+.++.++-.||-+|+|.+.+..
T Consensus 22 l~~~~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~glv~r~~~~ 79 (138)
T 3bpv_A 22 LGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp SGGGTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 8657989999999999985899799999999897987999999999968987860289
No 58
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.95 E-value=0.25 Score=26.32 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+.|.-..+|+..|.. .-+++.+|++++|++.++|..-+-.||=+|.|...
T Consensus 4 ~lD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tv~~Ri~rL~~~GiI~~~ 54 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 772899999999998489999999999891999999999999845982003
No 59
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=90.74 E-value=0.24 Score=26.33 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99989999999858---89889999999829999999999999999417986479
Q gi|254780305|r 31 YTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 31 ~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+..+-.|+..|. ..++.+-+|++..|++.+.|+.++-.||=+|+|.+.+.
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~glI~r~~~ 92 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPS 92 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999999999847899909999999989688699999999998798637432
No 60
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=90.74 E-value=0.18 Score=26.99 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.+-..+..+-.||..|.. +++.+-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 41 ~~~gLt~~q~~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~r~~~~ 97 (153)
T 2pex_A 41 KALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp TTTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 776979999999999984799899999999896886899999999988998981189
No 61
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=90.73 E-value=0.2 Score=26.76 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.|+..|+. .++.+-+|++..+++.+.++.++-.|+=+|+|.+.+..
T Consensus 37 glt~~q~~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~~gli~r~~~~ 90 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 989999999999997799799999999896998999999998507936424799
No 62
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=90.67 E-value=0.23 Score=26.49 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 688799989999999858---898899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+...+..+-.|+..|. ..++..-+|++..+++.+.|+.++-.||=+|+|.+.+..
T Consensus 24 l~~~glt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~glv~r~~~~ 83 (139)
T 3eco_A 24 LEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp HGGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 877698999999999998359999699999999896887899999999978897851678
No 63
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=90.63 E-value=0.18 Score=27.11 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 799989999999858-8988999999982999999999999999941798647986
Q gi|254780305|r 30 EYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
-..+..+-.|+..|. ..+++..+|++..+++.+.++.++-.||=+|+|.+.++..
T Consensus 33 ~~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~ 88 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPS 88 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-----
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 89799999999999977998999999998969879999999999879853503788
No 64
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.61 E-value=0.21 Score=26.72 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999985889-889999999829999999999999999417986
Q gi|254780305|r 34 CERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 34 ~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.-..+|++.|..+ -.+..+|++++|++.+.|..-+-.||=+|.|.+
T Consensus 4 ~~D~~Il~~L~~d~r~s~~~ia~~~gls~~tv~~Ri~rL~~~GvI~~ 50 (141)
T 1i1g_A 4 ERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp SHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 79999999999848989999999989299999999999733985999
No 65
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=90.54 E-value=0.2 Score=26.81 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999998588988999999982-999999999999999941798647
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
-.|+..|...+..+++|.+.. |++...++..|-+||-.|.|.|..
T Consensus 17 l~IL~~L~~g~~RF~eL~~~l~gIS~~~Ls~rLk~Le~~GLv~R~~ 62 (107)
T 2hzt_A 17 XVILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp HHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHC
T ss_conf 9999999819986999997764679889999999999878455312
No 66
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=90.46 E-value=0.19 Score=26.87 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.+...+..+-.||..|+. .++++-+|+++++++.+.|+.++-.||=+|+|.+.+.+
T Consensus 46 ~~~gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~glI~r~~~~ 102 (162)
T 3cjn_A 46 TALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp HHHTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 885959999999999984799899999999897988999999999868966885226
No 67
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=90.41 E-value=0.24 Score=26.39 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 887999899999998588-988999999982999999999999999941798647
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
.+-..+..+-.|+..|+. .++++.+|++..+++.+.|+.++-.||-+|+|.+..
T Consensus 28 ~~~~lt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~g~i~r~~ 82 (138)
T 1jgs_A 28 SPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp TTTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6859699999999999877998999999998978879999999998689779855
No 68
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=90.40 E-value=0.39 Score=25.26 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999858-89889999999829999999999999999417986479868981
Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.||.... ...+...+|+++.+++.+.|..++-.|+-+|.|.+.+++.+.|+
T Consensus 10 ~i~~l~~~~~~v~~~~iA~~l~vs~~sv~~~l~rL~~~g~i~~~~~~~i~LT 61 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLT 61 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEC
T ss_conf 9999970489778999999868995799999999997899897389777657
No 69
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.37 E-value=0.26 Score=26.20 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999858-89889999999829999999999999999417986479868981
Q gi|254780305|r 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 37 ~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
..||..-. ...+...+|+++.+++.+.|..+|-.|+-+|.|...+.|.+.|+
T Consensus 13 ~~Iy~l~~~~~~~~~~~lA~~L~vs~~sv~~~l~~L~~~Glv~~~~~~~i~LT 65 (230)
T 1fx7_A 13 RTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELT 65 (230)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEC
T ss_conf 99999986499761999999878892899999999988889898189888988
No 70
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=90.37 E-value=0.23 Score=26.49 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.|+..|+. .+.++.+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 28 glt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~gli~r~~~~ 81 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 969999999999987799899999999896986899999999858987844899
No 71
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=90.30 E-value=0.2 Score=26.83 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999985889889999999829999999999999999417986479868981
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+-.|++.|...|.++++|+.++|++...+...|--|.-.|.+.+-. +.|.++
T Consensus 28 elglfd~L~~g~~t~~eLA~~~g~~~~~l~~lL~~L~~~gll~~~~-~~y~lt 79 (335)
T 2r3s_A 28 ELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQA-EGYRLT 79 (335)
T ss_dssp HTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred HCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-CEEEEC
T ss_conf 8799899857999999999771979999999999998789238737-856516
No 72
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=90.29 E-value=0.48 Score=24.75 Aligned_cols=46 Identities=11% Similarity=0.230 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999985889-889999999829999999999999999417986
Q gi|254780305|r 34 CERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 34 ~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.--.+|+..|..+ -+++.+|++.+|++.+.|..-+-.||=+|.|.+
T Consensus 3 ~~D~~IL~~L~~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 79999999999848999999999989299999999999984798232
No 73
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=90.28 E-value=0.33 Score=25.65 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHH----CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CEEEEECC
Q ss_conf 999985----889889999999829999999999999999417986479--86898137
Q gi|254780305|r 38 RIKQSL----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE--GKVSLTMH 90 (95)
Q Consensus 38 ~Il~~L----~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG--g~v~l~~~ 90 (95)
+++-.| +..|+++++|+++.++|..-+.-+|-.|.-+|.|....| |=|+|+--
T Consensus 31 r~L~~LA~~~~~~~vs~~eIAe~~~ip~~~L~kIl~~L~kaGlv~S~rG~~GGy~Lak~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred HHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEECCC
T ss_conf 99999980889981959999987890999999999998327938836888888545569
No 74
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.97 E-value=0.37 Score=25.38 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999998588988-9999999829999999999999999417986
Q gi|254780305|r 32 TQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.|.-..+|++.|..++. ++-+|++.+|++.++|..-+-.|+-+|.|..
T Consensus 6 lD~~D~~Il~~L~~d~R~s~~~ia~~lg~s~~tv~~Ri~rL~~~GiI~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 6899999999999848999999999989199999999999973686100
No 75
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=89.86 E-value=0.21 Score=26.69 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
...+..+-.|+..|.. .++.+.+|+++.+++.+.++.++-.||=+|+|.+.++.
T Consensus 36 ~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~gli~r~~~~ 90 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 6979999999999998799899999999896987999999999988997742499
No 76
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=89.73 E-value=0.23 Score=26.43 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 7999899999998588-988999999982----9999999999999999417986479868
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...+..|-.|+.+|-. +++++.+|+... +|..++|..+|-.||=+|+|.|...|+-
T Consensus 6 ~~lt~~E~~VM~~LW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~KG~v~r~~~g~~ 66 (123)
T 1okr_A 6 YEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKI 66 (123)
T ss_dssp CCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9989999999999983799799999999751238754249999999998898788734881
No 77
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.55 E-value=0.34 Score=25.57 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
...+..+-.|+..|.. .+.++-+|++..+++.+.++..+-.|+=+|+|.+.+..
T Consensus 27 ~gls~~~~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~glv~r~~~~ 81 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGE 81 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 6989999999999998799499999999896988999999999857987985768
No 78
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=89.34 E-value=0.27 Score=26.11 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.+-..+..+-.||..|.. .++.+.+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus 31 ~~~glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~g~v~r~~~~ 87 (143)
T 3oop_A 31 ASYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp TTSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 866999999999999986899799999999896997999999999756774341058
No 79
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=89.15 E-value=0.28 Score=25.99 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 356887999899999998588--9889999999829999999999999999417986479
Q gi|254780305|r 25 ITHYPEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 25 ~~~~p~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
....+-..+..+-.||..|.. .+++..+|++.++++.+.++.++-.||=+|+|.+.+.
T Consensus 44 ~~l~~~gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~GlI~r~~~ 103 (166)
T 3deu_A 44 HRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp HHTTTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999876989999999999997698979999999979899899999999985898886131
No 80
>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69
Probab=89.11 E-value=0.23 Score=26.47 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=41.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999998588988999999982-999999999999999941798647
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
.-.|+..|...+..+++|.+.. |++...++..|-+||=.|.|.+..
T Consensus 37 ~l~Il~~L~~G~~RF~el~~~l~gis~~vLs~rLk~Le~~glV~r~~ 83 (131)
T 1yyv_A 37 GVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999549998999997721346588999999999789668656
No 81
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=89.07 E-value=0.34 Score=25.53 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999858-89889999999829999999999999999417986479868981
Q gi|254780305|r 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 37 ~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
..||..-. ...+...+|++..+.+.+.|..++-.|+-+|.|...+.|.+.|+
T Consensus 13 ~~Iy~L~e~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~Gli~~~~~~~v~LT 65 (226)
T 2qq9_A 13 RTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMT 65 (226)
T ss_dssp HHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEC
T ss_conf 99999996499651999999968991799999999998899897289787989
No 82
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=88.98 E-value=0.53 Score=24.51 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 98899999998299999999999999994179864798689813
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+...+|+++.|++...|-.+|..|+-.|+|...||+-+.++.
T Consensus 48 ~~L~e~~La~~~gvSRtpVREAL~~L~~eGlv~~~p~~G~~V~~ 91 (237)
T 3c7j_A 48 TALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGAVVAP 91 (237)
T ss_dssp CBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCC
T ss_conf 97499999998895869999999999987886323898874444
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=88.90 E-value=0.12 Score=28.02 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
....+..+-.||..|.. .++..-+|++..+++.+.++.++-.||=+|+|.+.++.
T Consensus 28 ~~~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 83 (139)
T 3bja_A 28 QYDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNP 83 (139)
T ss_dssp GGTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECS
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 86989999999999998699899999847086888999999999988987983058
No 84
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=88.85 E-value=0.41 Score=25.09 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 98899999998299999999999999994179864798689813
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+...+|+++.|++...|-.+|..||-.|+|...||+-+.++.
T Consensus 42 ~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~p~~G~~V~~ 85 (226)
T 3dbw_A 42 EKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTD 85 (226)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCC
T ss_conf 99699999999892989999999999887893437999876654
No 85
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=88.78 E-value=0.24 Score=26.36 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999899999998588-98899999998299999999999999994179864
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+..+-.||..|.. .++.+.+|+++.+++.+.++.++-.||=+|+|.|.
T Consensus 38 glt~~q~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~glV~r~ 88 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKL 88 (154)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEES
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 989999999999997799899999999797875799999999978997996
No 86
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.76 E-value=0.29 Score=25.94 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+..+-.||..|.. .++.+-+|++.++++.+.++.++-.|+=+|+|.+.+.
T Consensus 41 ~ls~~q~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~g~v~r~~~ 93 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMD 93 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999869949999999989798899999999998889021035
No 87
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=88.69 E-value=0.29 Score=25.91 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=50.1
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+-..+..+-.||..|.. .++++-+|++.++++.+.++.++-.||=+|+|.+.+..
T Consensus 41 lk~~gLt~~q~~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~gli~r~~~~ 98 (207)
T 2fxa_A 41 LKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp TGGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 2547999999999999997699499999999886987999999999968998872389
No 88
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=88.67 E-value=0.2 Score=26.82 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 887999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.....+..+-.||..|.. .+++.-+|++..+++.+.++.++-.||=+|+|.+.++
T Consensus 40 ~~~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~ 95 (162)
T 3k0l_A 40 SALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp HTTTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 67597999999999999779989999999989688699999999998899798527
No 89
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.65 E-value=0.5 Score=24.64 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHC------CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 989999999858------8988999999982999999999999999941798647986
Q gi|254780305|r 33 QCERVRIKQSLN------NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 33 ~~~~~~Il~~L~------~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
..-|++||+.+. .-+-++.+|++.+|++...+...|-.||=+|.+.+.+|..
T Consensus 4 T~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L~~Le~kG~i~~~~~~~ 61 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNGKP 61 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC---T
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHCCCCCC
T ss_conf 9899999999999999849896699999982999645788899998758301054211
No 90
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=88.41 E-value=0.4 Score=25.17 Aligned_cols=49 Identities=6% Similarity=0.023 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998999999985889-889999999829999999999999999417986
Q gi|254780305|r 31 YTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+|.-..+|++.|..+ ..++.+|++.+|++.++|..-+-.||=+|.|++
T Consensus 6 ~LD~~D~~Il~~L~~d~R~s~~eia~~lgls~~tv~~Ri~~L~~~gvI~~ 55 (151)
T 2dbb_A 6 KLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 76199999999998859999999999989699999999999996798621
No 91
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=88.40 E-value=0.37 Score=25.39 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999998588---9889999999829999999999999999417986479
Q gi|254780305|r 31 YTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+..+-.||..|+. +++.+-+|++..+++.+.++.++-.||-+|+|.+...
T Consensus 155 ~Ls~~e~~vL~~L~~~~~~~~~~~~la~~l~~~~~~vs~~i~~L~~~GlI~r~~~ 209 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERS 209 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9899999999999869999676999999978885069999999998899896179
No 92
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.32 E-value=0.43 Score=25.03 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC------EEEEE
Q ss_conf 87999899999998588--98899999998299999999999999994179864798------68981
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG------KVSLT 88 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg------~v~l~ 88 (95)
.......+-.||..|.. +++.+.+|++..+++.+.++.++=.||=+|+|.+.+.. +++|+
T Consensus 32 ~~glt~~q~~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT 99 (146)
T 2fbh_A 32 HLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLT 99 (146)
T ss_dssp GGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEEC
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEC
T ss_conf 85989999999999986799999999999989689899999999963987786367899895687889
No 93
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=87.97 E-value=0.59 Score=24.25 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999899999998588-9889999999829999999999999999417986
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+|.--.+|+..|.. .-.++-+|++..|++.++|..-+-.||=.|.|+.
T Consensus 4 ~lD~~D~~Il~~L~~n~R~s~~~ia~~~gls~~tv~~Ri~rL~~~GiI~~ 53 (150)
T 2w25_A 4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 57099999999999838999999999989298999999999986898310
No 94
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=87.78 E-value=0.86 Score=23.38 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=41.3
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999858-898899999998299999999999999994179864
Q gi|254780305|r 34 CERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 34 ~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+..||+++- +.|++--+|++.+||+.++|+.++-+|.=.|.|...
T Consensus 16 ~N~~~Il~~i~~~g~iSR~ela~~~gls~~Tvs~iv~~L~~~gli~e~ 63 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 999999999998599189999988795999999999999988988961
No 95
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=87.77 E-value=0.82 Score=23.50 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
....+..+-.|+..|.. .++.+-+|++..+++-+.++.++-.||=+|+|.+....
T Consensus 38 ~~gLt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~Glv~r~~~~ 93 (155)
T 3cdh_A 38 AQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp HTTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 82969999999999985799699999999896998899999999968977983158
No 96
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=87.73 E-value=0.29 Score=25.93 Aligned_cols=55 Identities=5% Similarity=0.016 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
.-..+..+-.||..|.. .++.+-+|++..+++.+.+..++-.||=+|+|.+.+..
T Consensus 35 ~~glt~~q~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~~L~~~g~v~r~~~~ 90 (147)
T 1z91_A 35 KLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp TTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 86989999999999997799499999999797887899999999988997986778
No 97
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39
Probab=87.58 E-value=0.56 Score=24.39 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHC--CCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99989999999858--8988999999982----999999999999999941798647986
Q gi|254780305|r 31 YTQCERVRIKQSLN--NVPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 31 ~~~~~~~~Il~~L~--~~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
.++..|..|+++|= .+|+.+.+|.... +|..++|...|-.|+=+|+|.+...|+
T Consensus 6 ~L~~~E~~IM~ilW~~~~~~t~~eI~~~l~~~~~~~~sTV~t~L~rL~~KG~l~~~~~Gr 65 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDR 65 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCC
T ss_conf 788999999999984899927999999871047994879999999999779403112798
No 98
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Probab=87.50 E-value=0.34 Score=25.58 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999998588988999999982-999999999999999941798647
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
.-.|+..|...+.++.+|.+.. |++...++..|-+||-.|.|.|.-
T Consensus 27 ~~~Il~~l~~g~~rF~el~~~l~~iS~~~Ls~rLk~Le~~glI~r~~ 73 (107)
T 2fsw_A 27 TLLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 99999998259988999987741127789999999999887815456
No 99
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=87.36 E-value=0.55 Score=24.43 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 799989999999858---89889999999829999999999999999417986479
Q gi|254780305|r 30 EYTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
...+..+-.|+..|. ..++...+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 30 ~glt~~q~~vL~~l~~~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~ 85 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69899999999999848999959999999989788589999999988777886630
No 100
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=87.33 E-value=0.92 Score=23.23 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHC--CCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9989999999858--8988999999982-----999999999999999941798647
Q gi|254780305|r 32 TQCERVRIKQSLN--NVPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 32 ~~~~~~~Il~~L~--~~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
....+..|++.|. ..+.++++|.... .++.++|+..|-.|+=.|+|.+..
T Consensus 20 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~~~gii~~i~ 76 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEEE
T ss_conf 599999999999858999999999999985078988889999999998552179997
No 101
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium}
Probab=87.21 E-value=0.64 Score=24.06 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHHHHHCCCC--CCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEE
Q ss_conf 999999858898--8999999982-99999999999999994179864798--68981
Q gi|254780305|r 36 RVRIKQSLNNVP--IHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHPEG--KVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~~p--~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~pGg--~v~l~ 88 (95)
.-.|+..|...+ .++++|.+.. |++...++..|-+||=.|.|.+.... .|+|+
T Consensus 29 t~~Il~~L~~g~~r~~F~el~~~l~~Is~~~Ls~rLk~L~~~Glv~r~~~~~veY~LT 86 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALT 86 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCEEEEEC
T ss_conf 9999999980898577999998720235888999999999799377269997588779
No 102
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=87.18 E-value=0.53 Score=24.50 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.|+..|.. .++++.+|++..+++.+.++.++-.||=+|+|.+....
T Consensus 46 glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~ 99 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHG 99 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 979999999999986799899999999787871599999999857987304578
No 103
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=87.12 E-value=1.4 Score=22.16 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-----CCCCEEEEECC
Q ss_conf 4443568879998999999985---889889999999829999999999999999417986-----47986898137
Q gi|254780305|r 22 NINITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH-----HPEGKVSLTMH 90 (95)
Q Consensus 22 ~~~~~~~p~~~~~~~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~-----~pGg~v~l~~~ 90 (95)
+...+..-..++.++..||+.+ |..-+-.-+|..+|+++...|..+|=.||-+++|.. .++-++-+..+
T Consensus 8 d~e~a~k~~~l~~eE~lVY~~I~~aG~~GIW~kdIk~ktnl~~~~v~K~LK~LEsk~lIK~VksV~~~~rK~YmL~~ 84 (91)
T 2dk5_A 8 DSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYN 84 (91)
T ss_dssp CCCCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEESS
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEC
T ss_conf 98999987489999999999999807676339999988299889999999999746980654034689807999724
No 104
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=87.11 E-value=0.54 Score=24.49 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 887999899999998588--9889999999829999999999999999417986479
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
.+...+..+-.||..+.. .++...+|++.++++.+.++..+-.||=+|+|.+.+.
T Consensus 33 ~~~gls~~q~~iL~~l~~~~~~~t~~ela~~l~~~~~~vsr~v~~L~~~glI~r~~~ 89 (150)
T 3fm5_A 33 VPTGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLD 89 (150)
T ss_dssp GGGTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC---
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 884979999999999998598989999999978878778899998976476466018
No 105
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=87.08 E-value=0.72 Score=23.79 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999899999998588-9889999999829999999999999999417986
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+|.-..+|++.|.. .-+++-+|++++|++.+.|..-+-.||=+|.|..
T Consensus 7 ~LD~~D~~Il~~L~~d~R~s~~eiA~~~gls~~tv~~Ri~rLe~~GiI~~ 56 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 80899999999999837999999999989299999999999985793267
No 106
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.97 E-value=0.5 Score=24.64 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999899999998588-988999999982999999999999999941798647986
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
..+..+-.||..|+. .+..+-+|++..+++.+.++.++-.|+=+|+|.+.+...
T Consensus 30 gLt~~q~~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~ 84 (145)
T 2a61_A 30 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPA 84 (145)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9799999999999877998999999998979878999999985289379967588
No 107
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Probab=86.56 E-value=0.33 Score=25.62 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999998588988999999982-999999999999999941798647
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
-.|+..|..++.++++|.+.. |++...++..|-+||-.|.|.+..
T Consensus 25 l~Il~~L~~g~~rF~eL~~~l~gIS~~~Ls~rLk~L~~~glv~r~~ 70 (112)
T 1z7u_A 25 LSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp HHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999729987999997762447788999999999889836647
No 108
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=86.22 E-value=0.53 Score=24.53 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=41.3
Q ss_pred HCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 588-98899999998299999999999999994179864798689813
Q gi|254780305|r 43 LNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 43 L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
|.+ +.++..+|+++.|++...|-.+|..||-.|+|...||+-+.+..
T Consensus 46 l~pG~~L~E~~La~~~gVSRtpvREAL~~L~~~GlV~~~~~~G~~V~~ 93 (239)
T 2hs5_A 46 FRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRV 93 (239)
T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999197089999999896959999999999985766630367763321
No 109
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=86.12 E-value=0.56 Score=24.41 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7999899999998588---98899999998299999999999999994179864798
Q gi|254780305|r 30 EYTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
-..+..+-.||..|.. .++.+-+|++..+++.+.++.++-.||=+|+|.+.++.
T Consensus 33 ~~lt~~q~~iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~glI~r~~~~ 89 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE 89 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 597999999999998289998789999999798873699999999978977984037
No 110
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.91 E-value=0.85 Score=23.40 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999998588-9889999999829999999999999999417986
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
+|.-..+|+..|.. ..+++.+|++.+|++.+.|..-+-.||=+|.|.+
T Consensus 3 lD~~D~~Il~~L~~n~R~s~~eiA~~~g~s~~tv~~Ri~rL~~~GiI~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 6889999999999838999999999989298999999999985898467
No 111
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=85.67 E-value=0.63 Score=24.10 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHC--C-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 989999999858--8-988999999982-----999999999999999941798647
Q gi|254780305|r 33 QCERVRIKQSLN--N-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 33 ~~~~~~Il~~L~--~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
...+..|++.|. . .+.++++|.... .++.++|+.+|-.|+=.|+|.+..
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~el~~~l~~~~~~i~~aTVYR~L~~l~~~gii~~i~ 72 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEE
T ss_conf 999999999998389999999999999986188867799999999998754689997
No 112
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.32 E-value=0.58 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998588-9889999999829999999999999999417986479
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
+..||+.++. .|-.--+|+.+.+++.-+.---|+-||-.|+|+|.|-
T Consensus 2 K~~IL~f~~~~n~ckT~EIA~~~~vsaYQARyYL~~LEKEgkIrRsPl 49 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPL 49 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECC
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCEECCCC
T ss_conf 068999987539960899999865089999999999977076104850
No 113
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.11 E-value=0.59 Score=24.27 Aligned_cols=55 Identities=4% Similarity=0.051 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999899999998588-988999999982----9999999999999999417986479868
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
..+..|-.|+.+|=. +++++.+|+... +|+.++|...|-.||-+|+|.+.-.|+.
T Consensus 7 ~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~Kg~l~r~~~g~~ 66 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENI 66 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 989999999999986899779999998533468856069999999997898788733882
No 114
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=85.03 E-value=1 Score=22.98 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=41.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999985889889999999829999999999999999417986479868981
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-.|++.+ .++.+..+|+.++|++...+...|--|.-.|++.+- ||.|+++
T Consensus 47 l~lfd~l-~~~~t~~eLA~~~g~~~~~l~~lLr~L~a~Gll~~~-~~~y~~t 96 (352)
T 3mcz_A 47 DKLFDLT-QTGRTPAEVAASFGMVEGKAAILLHALAALGLLTKE-GDAFRNT 96 (352)
T ss_dssp TTHHHHT-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEC
T ss_pred CCCCHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCEEECC
T ss_conf 7983232-699999999988298989999999999868928998-9999788
No 115
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.88 E-value=0.81 Score=23.51 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=41.1
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998588-9889999999829999999999999999417986
Q gi|254780305|r 35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+..||++|-. .|++--+|++.|||+.++|+.++-+|.=+|+|..
T Consensus 40 N~~~il~~i~~~g~iSR~ela~~tgLS~~Tvs~iv~~Li~~glv~E 85 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999849918999998879599999999999998898897
No 116
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=84.13 E-value=0.84 Score=23.43 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=38.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ ++.+|+...|++.++|..+|-.|+-.|+|.+.+|.-+.++
T Consensus 33 ~~LPser~La~~~~vSr~tVr~Al~~L~~~Gli~~~~g~G~~V~ 76 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFIT 76 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEE
T ss_conf 99904999999979898999999999998892799738158980
No 117
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=83.99 E-value=0.8 Score=23.55 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 799989999999858---8988999999982999999999999999941798647986
Q gi|254780305|r 30 EYTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
-..+..+-.|+..|. ...+..-+|+++.+++.+.++.++-.||=+|+|.+.+...
T Consensus 37 ~glt~~q~~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~ 94 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPEN 94 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC----
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 5989999999999993799993999999998977858999999999888851057788
No 118
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=83.32 E-value=1.3 Score=22.42 Aligned_cols=54 Identities=19% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56887999899999998588-9889999999829999999999999999417986
Q gi|254780305|r 26 THYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 26 ~~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
...|...+.++..|++..+. .-++++++....||+..++...|-.|+-.|.+..
T Consensus 159 ~Svp~els~D~~~vL~~a~~~g~vt~~~L~~~lgWs~~ra~~~L~~l~~~Gllwv 213 (233)
T 1u5t_A 159 RSVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWI 213 (233)
T ss_dssp CCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEE
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 9277677568999999998669938999998969899999999999997799899
No 119
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=83.20 E-value=0.83 Score=23.48 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 98899999998299999999999999994179864798689813
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+...+|+++.|.+...|-.+|..|+-.|+|...||+-+.+..
T Consensus 38 ~~L~e~~La~~~gvSRtpVReAL~~L~~~GlV~~~p~~G~~V~~ 81 (222)
T 3ihu_A 38 QRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRR 81 (222)
T ss_dssp CEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 97189999999893979999999999977881213788752323
No 120
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=83.15 E-value=1.7 Score=21.73 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHCC-CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9899999998588-988-99999998299999999999999994179864798689
Q gi|254780305|r 33 QCERVRIKQSLNN-VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.....+|++.+.. +.+ +..+|+++-|.+..+|..+|-+|+-.|.|.+...|.|.
T Consensus 20 ~~~l~~I~~gl~~G~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGlI~rrG~GtfV 75 (248)
T 3f8m_A 20 RAELDRMLDGMRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTVV 75 (248)
T ss_dssp HHHHHHHHHHCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCEEE
T ss_conf 99999998379998848479999999797999999999999977888714643286
No 121
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.06 E-value=0.62 Score=24.14 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=40.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999858898899999998299999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+.+||+.|-..|++--+|++.+||+.++|+.++-+|.=+|.|...
T Consensus 22 ~~~il~~l~~gpiSR~eLa~~tgLS~~Tvs~iv~~L~~~gli~e~ 66 (380)
T 2hoe_A 22 ISRILKRIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CCCSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999998099599999988895999999999999988988982
No 122
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=82.82 E-value=0.67 Score=23.95 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHHH----HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8999999----985889889999999829999999999999999417986479868981
Q gi|254780305|r 34 CERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 34 ~~~~~Il----~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
.++++++ ..++..|-.+.+|+...|++...+-.+|-.|.-.|.|.+..+++|-..
T Consensus 3 ~~~q~~w~~ie~~~~~~Pp~v~dla~~l~~d~~~~~~~L~~l~~~G~lv~i~~~~y~~~ 61 (121)
T 2pjp_A 3 EEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRN 61 (121)
T ss_dssp HHHHHHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEEEEH
T ss_conf 89999999999987469998999998979499999999999998995899529988858
No 123
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=82.82 E-value=1.2 Score=22.51 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=38.1
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|+++.|++..+|..+|-+|+-.|+|.+.+|.=..++
T Consensus 51 ~rLPsereLA~~~gVSR~TVR~Al~~L~~~Glv~~~~G~GtfV~ 94 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSGTYVR 94 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf 99908999999989499999999999998699386498116992
No 124
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=82.78 E-value=1.9 Score=21.50 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHC------CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99989999999858------898899999998299-9999999999999941798647986898
Q gi|254780305|r 31 YTQCERVRIKQSLN------NVPIHIDDIIHHTGI-EAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 31 ~~~~~~~~Il~~L~------~~p~~iD~l~~~tgl-~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
+++.-|++||+.+. .-+=++.+|++..|+ +.+.|+..+-.||-+|.+.+.+|..-+.
T Consensus 3 ~LT~kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~L~~~G~l~~~~~~~r~~ 66 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGI 66 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSSSCE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 4599999999999999998298966999999849997289999999887638500013544333
No 125
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=82.59 E-value=0.44 Score=24.97 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9889999999829999999999999999417986479868
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.+++.-+|+++.+++.+.++..|-.||=+|.|.|.+.++.
T Consensus 26 ~~ls~~eLa~~l~is~~tvsr~l~~Le~~GlI~R~~d~R~ 65 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRG 65 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCE
T ss_conf 9858999999988788899999999998898798115984
No 126
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=82.32 E-value=0.35 Score=25.46 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..+..+-.|+..|.. .++..-+|+.+.+++.+.++.++-.|+=+|+|.+.+..
T Consensus 34 glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 979999999999997799899999999897987999999999988997983378
No 127
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=82.18 E-value=2.5 Score=20.87 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6887999899999998588-9889999999829999999999999999417986
Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
..|...+.++..|++.... .-+++++|.+..||+..++...|-.|+-.|.+-.
T Consensus 147 Svp~el~~D~~~il~~~~~~g~vT~~~L~~~lgWs~~ra~~~Le~lv~~Gllwi 200 (234)
T 3cuq_A 147 SVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp CSCCCCCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 688642218999999998469916999999979699999999999996899899
No 128
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=81.91 E-value=1.2 Score=22.67 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=38.6
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|++..|++..+|..++-.||-.|+|.+.+|.-+.++
T Consensus 35 ~~LPser~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g~G~~V~ 78 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVT 78 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC
T ss_conf 99954999999939288999999999998891799638679980
No 129
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=81.43 E-value=0.61 Score=24.19 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+..+-.++..|+. .++..-+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus 26 glt~~q~~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~g~i~r~~~ 78 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED 78 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 98999999999998489979999999989788899999999996898631148
No 130
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=81.18 E-value=0.93 Score=23.19 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 887999899999998588-9889999999829999999999999999417986
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
.+...+....++++.+.. ..+++..|.++.+|+.++....|-.||-.|.|.+
T Consensus 148 ~~~~~d~~~~~~l~~v~~~~~~S~s~Lqr~l~i~~~rA~~~Ld~le~~Giv~~ 200 (218)
T 3cuq_B 148 QSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCR 200 (218)
T ss_dssp TTCCGGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 87205889999999998779948999999979699999999999997893898
No 131
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=80.36 E-value=1 Score=22.95 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999899999998588-988999999982----99999999999999994179864798689
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
.++..|..|++.|=. +|+.+.+|.... ++..++|...|-.|+-+|.|.+.-.|+..
T Consensus 6 ~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg~l~~~~~gr~~ 66 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVF 66 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf 9999999999999817997899999986023697285799999999988986887259838
No 132
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=79.45 E-value=1.9 Score=21.56 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-++...+|+..+|++...|+.+|-+|+=.|.|.+..+|.+.+.
T Consensus 166 ~~lt~~~lA~~lg~sr~tvsr~l~~l~~~g~I~~~~~~~i~i~ 208 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLK 208 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEES
T ss_pred ECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf 0724999999979999999999999998899997699989989
No 133
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis}
Probab=79.21 E-value=1.1 Score=22.89 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999858--8988999999982-----999999999999999941798647
Q gi|254780305|r 34 CERVRIKQSLN--NVPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 34 ~~~~~Il~~L~--~~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
..+..|++.|. ..+.+.|+|.... .++.++|+.+|=.|+=.|+|.+..
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~aTVYR~L~~L~~~gli~~i~ 65 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999808999899999999997588998889999999998689489998
No 134
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=79.18 E-value=2.4 Score=21.02 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHCC---CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99899999998588---988999999982-----999999999999999941798647
Q gi|254780305|r 32 TQCERVRIKQSLNN---VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 32 ~~~~~~~Il~~L~~---~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
....+..|++.|.. .+.++++|.... .++.++|+..|-.|+=.|+|.+.-
T Consensus 15 ~T~qR~~Il~~l~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~i~ 72 (83)
T 2fu4_A 15 VTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp CCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6999999999999589999999999999875189987604999999999889889997
No 135
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.14 E-value=1.1 Score=22.86 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
..+..+-.|+..|.. .+.++-+|+++.+++.+.++.++-.|+=+|.|.+.+.
T Consensus 33 glt~~q~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~glI~~~~~ 85 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 98999999999999879979999999979898899999999995898798306
No 136
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=78.79 E-value=2.1 Score=21.28 Aligned_cols=44 Identities=5% Similarity=-0.084 Sum_probs=38.8
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 988-99999998299999999999999994179864798689813
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+ +..+|+++.|.+..+|..+|-+|+-.|+|.+.+|.=..++-
T Consensus 31 ~~LPsE~eLa~~~~VSr~TvR~Al~~L~~eGli~r~~g~GtfV~~ 75 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQP 75 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEECC
T ss_conf 999279999999795999999999999972150405886699860
No 137
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=78.19 E-value=1.7 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|+++.|.+..+|..+|-.|+-.|.|.+.+|.=+.++
T Consensus 32 ~~LPse~~La~~~~VSr~TVR~Al~~L~~eGli~~~~g~G~~V~ 75 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS 75 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99937999999979699999999999997799799788446557
No 138
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=77.86 E-value=1.5 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=37.6
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 988-9999999829999999999999999417986479868981
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+.+ +..+|++..|.+...|..+|-.|+-.|+|.+.+|.=+.++
T Consensus 26 ~~LPse~~La~~~gVSr~tVR~Al~~L~~~Glv~~~~g~G~~V~ 69 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVS 69 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC
T ss_conf 99878999998929999999999999998891799638667888
No 139
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=77.23 E-value=1.9 Score=21.53 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+++..+|+..+|.+...|+.+|-+|+=.|+|.....|++.+.
T Consensus 163 ~lt~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~r~~i~i~ 204 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIP 204 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECS
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf 846999999979989999999999998899998899969989
No 140
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=76.80 E-value=1.2 Score=22.59 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=40.4
Q ss_pred HHHHHHHHHCC--CCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHH----------CCCCEEEEE
Q ss_conf 99999998588--9889999999829999---999999999999417986----------479868981
Q gi|254780305|r 35 ERVRIKQSLNN--VPIHIDDIIHHTGIEA---PVVYLVLLELDLAGRLCH----------HPEGKVSLT 88 (95)
Q Consensus 35 ~~~~Il~~L~~--~p~~iD~l~~~tgl~~---~~v~~~LleLEL~G~i~~----------~pGg~v~l~ 88 (95)
-+-.|+++|.. .|.++++|+.++|++. ..+...|-.|.-.|.+.+ ..++.|+++
T Consensus 31 ~eL~lfd~L~~~g~p~t~~eLA~~~g~~~~~~~~L~r~Lr~L~~~gl~~~~~~~~~~~~~~~~~~y~lt 99 (358)
T 1zg3_A 31 MELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLT 99 (358)
T ss_dssp HHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEEC
T ss_pred HHCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEECC
T ss_conf 987817888656999799999988395925778999999999977984753234445666556635178
No 141
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=76.56 E-value=2 Score=21.43 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 988-99999998299999999999999994179864798
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
+.+ +..+|+++.|++.+.|-.+|-.||-.|+|...+|.
T Consensus 26 ~~LpsE~eLa~~~gVSRt~VREAL~~L~~~Glv~~~~g~ 64 (239)
T 2di3_A 26 DHLPSERALSETLGVSRSSLREALRVLEALGTISTATGS 64 (239)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTT
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 999019999999891989999999999978997865698
No 142
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=76.54 E-value=3.9 Score=19.86 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHCC--C-CCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99899999998588--9-88999999982-----999999999999999941798647
Q gi|254780305|r 32 TQCERVRIKQSLNN--V-PIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 32 ~~~~~~~Il~~L~~--~-p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95)
....+..|++.|-. . +.++|+|.... .++.++|+..|-.|+=.|+|.+..
T Consensus 16 ~T~qR~~Il~~L~~~~~~h~sa~eI~~~l~~~~~~i~~~TVYR~L~~L~e~gli~~~~ 73 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7989999999998589999999999999997688988899999999999689189999
No 143
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=75.78 E-value=2.2 Score=21.22 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9899999998588-988999999982-----9999999999999999417986479
Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
...+..|++.|.. ...+.++|.... .++.++|+.+|-.|+-+|.|.+...
T Consensus 18 T~~R~~Il~~L~~~~~~ta~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Glv~~i~~ 73 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEC
T ss_conf 99999999999737998999999999975888765899999999998650577652
No 144
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=75.37 E-value=1.8 Score=21.71 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEC
Q ss_conf 898899999998299999999999999994179864--798689813
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PEGKVSLTM 89 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~--pGg~v~l~~ 89 (95)
..++++++|+++.|+|...+..++-.|.=+|+|... +||| +|+-
T Consensus 28 ~~~~s~~~ia~~~~i~~~~l~kil~~L~kaGlv~s~rG~GGy-~L~r 73 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGA-GLLK 73 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCE-EESS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-EECC
T ss_conf 986669999987890999999999999988986731699985-3048
No 145
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=75.02 E-value=1.2 Score=22.56 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHC---C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 35688799989999999858---8-9889999999829999999999999999417986479
Q gi|254780305|r 25 ITHYPEYTQCERVRIKQSLN---N-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95)
Q Consensus 25 ~~~~p~~~~~~~~~Il~~L~---~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95)
....+...+..+-.||..|. . ..+..-+|++.++++.+.++.++-.||=+|+|.+.+.
T Consensus 60 ~~l~~~GLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~GlV~r~~~ 121 (181)
T 2fbk_A 60 RTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99988697999999999998509999909999999978787579999999998788243578
No 146
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=74.70 E-value=3.1 Score=20.39 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHH
Q ss_conf 87999899999998588988-99999998299999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~-~iD~l~~~tgl~~~~v~ 65 (95)
.-|.+.-+.+|++.|...|. .-|+|+++.|+++++|-
T Consensus 178 dvpidekeerileilrenpwtphdeiarrlglsvseve 215 (380)
T 3m6z_A 178 DVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE 215 (380)
T ss_dssp TCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC
T ss_conf 79977378999999960899972899998488532313
No 147
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=74.40 E-value=2.7 Score=20.74 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=39.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 988-99999998299999999999999994179864798689813
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+ +.-+|+++.|++.+.|..+|-.|+-.|+|...||+-+.+..
T Consensus 29 ~~LPse~eLa~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEECC
T ss_conf 999159999999892999999999999987995555588665637
No 148
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=74.35 E-value=1 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999998588-98899999998299999-999999999994179864798
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAP-VVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~-~v~~~LleLEL~G~i~~~pGg 83 (95)
..+.+|++.|.. .|...=.|++..|++-+ .|..+|..||=+|.|.+..+.
T Consensus 11 ~~~ekI~~~L~~~~~stAl~iAk~LGl~kakeVN~~LY~L~k~g~v~k~~~t 62 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTT 62 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCC
T ss_conf 8999999999966995399999992997267774999999976781227998
No 149
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=74.30 E-value=4.4 Score=19.53 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEC
Q ss_conf 899999998588-9889999999829999999999999999417-9864798689813
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKVSLTM 89 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v~l~~ 89 (95)
....+|++.|.. .+++-++|+++.|++...|.-.+=.|+-.|. |...++.-|+|..
T Consensus 5 ~~~~~ll~~L~~g~~~SGe~la~~L~iSR~aVwk~i~~L~~~G~~I~s~~~~GY~l~~ 62 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCEEECC
T ss_conf 4499999997269959799999987979999999999999779729997896759898
No 150
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=73.98 E-value=1.8 Score=21.60 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
++..++|+..+|++...++.+|-+|+=.|+|.. -||.+.+.
T Consensus 186 ~~~~~~lA~~~g~sr~tv~R~L~~L~~~glI~~-~~~~i~I~ 226 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIEL-HRKEILIP 226 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE-ETTEEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf 789999998979899999999999998898997-09999986
No 151
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.97 E-value=4.5 Score=19.49 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 43568879998999999985---8898899999998299999999999999994179864
Q gi|254780305|r 24 NITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 24 ~~~~~p~~~~~~~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+.+.....++.++..||..+ |..-+-.-+|-.+|+|+...|..+|=.||-++.|...
T Consensus 27 e~a~k~~~L~~eE~lVY~~Ie~aGn~GIWtkdIk~ktnL~~~~l~K~LK~LEskklIKsV 86 (95)
T 2yu3_A 27 QNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp SSCCCCCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 998776199989999999999817677449999988199889999999998625883641
No 152
>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71
Probab=73.58 E-value=2.7 Score=20.71 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHH----C---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9998999999985----8---8988999999982999999999999999941798
Q gi|254780305|r 31 YTQCERVRIKQSL----N---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78 (95)
Q Consensus 31 ~~~~~~~~Il~~L----~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~ 78 (95)
+.|+.-..||..| . ..+.++-.|++|++++.+.+...|+.|.=.|.+.
T Consensus 13 ~lDP~~vavL~~L~~A~~e~~g~~wSLAkl~KRa~vpMStLRR~LT~L~~aGlv~ 67 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 6798999999999997404799953399998770896799999999986178058
No 153
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=72.82 E-value=2.2 Score=21.16 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=36.3
Q ss_pred HHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99985--88988999999982999999999999999941798647
Q gi|254780305|r 39 IKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 39 Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
|...+ +..+++.++++.++|++..++-.+|-.|.-+|.|.+.+
T Consensus 7 l~~~l~~~~~gl~~~el~~~~~l~~~~l~~~L~~L~~~g~i~~~~ 51 (135)
T 2v9v_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (135)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999998576898999999994989999999999985089589995
No 154
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=70.54 E-value=4.4 Score=19.54 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHH
Q ss_conf 87999899999998588988-99999998299999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~-~iD~l~~~tgl~~~~v~ 65 (95)
.-|.+.-+.+|++.|...|. .-|+|+++.|+++++|-
T Consensus 178 dvpidekeerileilrenpwtphdeiarrlglsvseve 215 (519)
T 2csb_A 178 DVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE 215 (519)
T ss_dssp TCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC
T ss_conf 79977378999999960899972899998488533413
No 155
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=70.06 E-value=2.2 Score=21.14 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--CEEEEECC
Q ss_conf 9999858---89889999999829999999999999999417986479--86898137
Q gi|254780305|r 38 RIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE--GKVSLTMH 90 (95)
Q Consensus 38 ~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG--g~v~l~~~ 90 (95)
.++-.|. .+++...+|+++.+++.+.+..+|-.|--+|.|....| |=|+|+..
T Consensus 16 ~~L~~La~~~~~~~ss~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~La~~ 73 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
T ss_conf 9999998389986669999988890999999999999647967834889997400279
No 156
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.54 E-value=3.4 Score=20.18 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999982999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+.+.+|++.+|++.++|+.+|-
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9799999998859999999985
No 157
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=69.40 E-value=3.9 Score=19.81 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHH--------CCCCCCHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9998999999985--------889889999999829----------99999999999999941798647986898
Q gi|254780305|r 31 YTQCERVRIKQSL--------NNVPIHIDDIIHHTG----------IEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 31 ~~~~~~~~Il~~L--------~~~p~~iD~l~~~tg----------l~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
..++.+.+|+.+| ...|.+++.|...|+ ++-++|..+|-+|.-+|.|....|+++.-
T Consensus 21 ~Ls~~E~RVLG~LiEKe~TTPd~YPLtLNaL~~aCNQKsnRePVm~l~e~eV~~aLd~L~~~~Lv~~~~gsRv~k 95 (183)
T 2nr3_A 21 QLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSRADR 95 (183)
T ss_dssp CBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECCSSCCE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 679999899998531123587767630999998860435668644589999999999999787857424886168
No 158
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=68.91 E-value=4.1 Score=19.70 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8899999998299999999999999994179864798689813
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
++.-.+|+..+|++...|+.+|-+|+=+|.|... |+.+.+..
T Consensus 187 ~lt~~~lA~~lg~sr~tv~R~l~~l~~~giI~~~-~~~I~I~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHAR-GKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEEE
T ss_conf 7899999999799899999999999978989973-99999971
No 159
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=68.57 E-value=3.2 Score=20.30 Aligned_cols=47 Identities=23% Similarity=0.204 Sum_probs=34.9
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999858---89889999999829999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...|++.|- ...++|++|++.|++....|..+|-.| |.+...-|+++
T Consensus 200 ~~~i~~~L~~~~~~~isi~dis~~T~i~~~DIi~tL~~l---~~l~~~~g~~~ 249 (284)
T 2ozu_A 200 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL---RMLDFRSDQFV 249 (284)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT---TCC--------
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHC---CCEEEECCEEE
T ss_conf 999999998658997169999988599899999999977---96898799089
No 160
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=68.33 E-value=6.1 Score=18.77 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=42.8
Q ss_pred CCHHHH--HHHHHHCCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHH----CCCC-----EEEEE
Q ss_conf 998999--99998588988999999982-------9999999999999999417986----4798-----68981
Q gi|254780305|r 32 TQCERV--RIKQSLNNVPIHIDDIIHHT-------GIEAPVVYLVLLELDLAGRLCH----HPEG-----KVSLT 88 (95)
Q Consensus 32 ~~~~~~--~Il~~L~~~p~~iD~l~~~t-------gl~~~~v~~~LleLEL~G~i~~----~pGg-----~v~l~ 88 (95)
...+.. -||..|...+.|=-+|.+.. .++.+.++.+|-.||=+|.|.. ..|+ +|+++
T Consensus 18 l~~~l~~~~IL~~L~~~~~yGYeI~~~l~~~~~~~~i~~gtlYp~L~rLe~~GlI~s~~~~~~~~g~~Rk~Y~IT 92 (115)
T 2dql_A 18 LCQEVAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVS 92 (115)
T ss_dssp CCHHHHHHHHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEC
T ss_conf 860889999999970599989999999998769737798754099999998898699974246788873589988
No 161
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=68.02 E-value=4.9 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHH-HHCC-CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99999-8588-988-999999982999999999999999941798647986898137
Q gi|254780305|r 37 VRIKQ-SLNN-VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95)
Q Consensus 37 ~~Il~-~L~~-~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95)
.+|.+ .+.+ +.+ +..+|+...|++..+|..+|-+|+-.|.|.+..|.=..++.+
T Consensus 16 ~~I~~g~~~~G~kLPsE~~La~~~~VSR~TvR~Al~~L~~~G~i~~~~G~Gt~V~~~ 72 (239)
T 3bwg_A 16 TYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp HHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCCCEEECCC
T ss_conf 999749999919991699999998959999999999999724605248872499987
No 162
>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=66.94 E-value=5.3 Score=19.11 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--CCCCEEEEEC
Q ss_conf 9999858-89889999999829999999999999999417986--4798689813
Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH--HPEGKVSLTM 89 (95)
Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~--~pGg~v~l~~ 89 (95)
+++-.|. .++++.++|++..+.+..-|..+|-.|.=+|.|.. -.||++ |+.
T Consensus 13 ~~L~~La~~~~~ss~~IAe~~~i~~~~l~kIl~~L~kaGlV~S~~g~GG~~-Lar 66 (145)
T 1xd7_A 13 HILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGAS-LKK 66 (145)
T ss_dssp HHHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCE-ESS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCC-CCC
T ss_conf 999998649998999999888919999999999998789078208999830-118
No 163
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=64.41 E-value=6.7 Score=18.55 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++.+++++|++++|++.+.++-.
T Consensus 17 ~~lf~e~G~~~~s~~~IA~~AGvs~~~iy~y 47 (213)
T 3ni7_A 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLY 47 (213)
T ss_dssp HHHHHHSCSTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999986976878999999909999999874
No 164
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=64.15 E-value=4.4 Score=19.57 Aligned_cols=41 Identities=5% Similarity=0.062 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
++.-.+|+..+|++..+|+.+|-+|+=+|.|... +|.+.+.
T Consensus 180 ~~t~~~lA~~~G~sr~tvsr~l~~l~~~g~I~~~-~~~i~I~ 220 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD-GKRIKII 220 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE-TTEEEES
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-CCEEEEC
T ss_conf 5059999988798999999999999988979970-9999986
No 165
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=64.04 E-value=7.5 Score=18.30 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=41.4
Q ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 985889889999999829999999999999999417986479868981
Q gi|254780305|r 41 QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 41 ~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
..=+..|-.+.+|+...+++...+..+|--|.=.|.|.++.+++|-..
T Consensus 151 ~~~g~~pp~~~el~~~l~~~~~~~~~~l~~l~~~g~lv~i~~~~~~~~ 198 (258)
T 1lva_A 151 RVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHR 198 (258)
T ss_dssp HHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEH
T ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEECH
T ss_conf 976999998899998949898999999999996897698279889979
No 166
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=63.86 E-value=5.7 Score=18.93 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=46.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999998588988999999982999999999999999941798647986898
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
.+.|++.|.++=.++--|.++.|++-+....+|-.|+=.|+|.+..=|++.+
T Consensus 13 ~~~il~lladgCktts~I~~~Lg~sh~~A~~~ly~Lakeg~V~~v~ig~~ai 64 (165)
T 2vxz_A 13 LRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVAL 64 (165)
T ss_dssp HHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEE
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEE
T ss_conf 9999999975450899999982650899999999998668169998634479
No 167
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=63.14 E-value=1.1 Score=22.73 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHHCC-CCCCHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998588-98899999998----29999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHH----TGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~----tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
|..|+.+|=. +|+.+-+|... .+++.++|...|-.|+=+|.|.+.-.|+.
T Consensus 37 E~~VM~iLW~~~~~t~~eI~~~l~~~~~~~~sTv~T~L~RL~~KG~l~~~k~Gr~ 91 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRK 91 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999990799589999999850138655669999999998898799952990
No 168
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=62.61 E-value=7.9 Score=18.19 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCCCCHHH-HHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHCCCCEEEEECC
Q ss_conf 87999899-9999985---8898899999998299999999999999994------1798647986898137
Q gi|254780305|r 29 PEYTQCER-VRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLA------GRLCHHPEGKVSLTMH 90 (95)
Q Consensus 29 p~~~~~~~-~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~------G~i~~~pGg~v~l~~~ 90 (95)
+...+.++ .++++++ +.+|+++++|++.++.+...+..+|-+|.-. |+....-||.|++...
T Consensus 8 ~~~~~~~el~~iIEAlLF~s~epvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~g~~l~~~~ggy~l~t~ 79 (219)
T 2z99_A 8 PAELDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTR 79 (219)
T ss_dssp -CCCCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEC
T ss_conf 354999999999999999717997999999883898899999999999987426663589996895899957
No 169
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=62.55 E-value=2.7 Score=20.69 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=39.8
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHCCCC--------EEEEEC
Q ss_conf 9999998588-----988999999982999------99999999999994179864798--------689813
Q gi|254780305|r 36 RVRIKQSLNN-----VPIHIDDIIHHTGIE------APVVYLVLLELDLAGRLCHHPEG--------KVSLTM 89 (95)
Q Consensus 36 ~~~Il~~L~~-----~p~~iD~l~~~tgl~------~~~v~~~LleLEL~G~i~~~pGg--------~v~l~~ 89 (95)
+-.|++.|.. .++++++|++++|++ +..+...|-.|.-.|.+.+..++ +|+++.
T Consensus 46 eLglFd~La~~~~~~~~lt~~eLA~~~g~~~~~~~~~~~L~RlLr~L~~~g~~~~~~~~~~~~~~~~~y~lt~ 118 (372)
T 1fp1_D 46 DLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM 118 (372)
T ss_dssp HTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred HCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCCH
T ss_conf 8794899985799989869999998659995566445899999999996783302046555676441234788
No 170
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.36 E-value=6.4 Score=18.68 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
|++-.+|+..+|++..+|+.+|-+|+=+|.|.. -+|.+.+.
T Consensus 175 ~lt~~~iA~~lg~sr~tvsR~l~~l~~~giI~~-~~~~i~I~ 215 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV-SPRSVTLL 215 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-CSSCEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf 769999998869989999999999997899997-29999999
No 171
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=61.90 E-value=8.2 Score=18.08 Aligned_cols=58 Identities=12% Similarity=-0.092 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC----CCCEEEEE
Q ss_conf 999899999998588-98899999998299999999999999994179864----79868981
Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH----PEGKVSLT 88 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~----pGg~v~l~ 88 (95)
..+..+..||..|.. ..++.+++++.++++..++...|-.|+=+|.|.+- -|+++.++
T Consensus 427 ~l~~~~~~iL~~l~~~~~it~~ela~~l~~s~~~~~~~L~~L~~~glie~~~~~g~~~~y~ls 489 (583)
T 3lmm_A 427 QDDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLG 489 (583)
T ss_dssp TTCHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEC
T ss_conf 676678999999986888789999988688999999999999977973324556658758526
No 172
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.89 E-value=6.4 Score=18.68 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHH-C-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998999999985-8-----898899999998299999999999999994179864
Q gi|254780305|r 32 TQCERVRIKQSL-N-----NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 32 ~~~~~~~Il~~L-~-----~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
++..+-.|+-.| + ..--+++.|+.++|++..+|...|-.|+=+|.|..-
T Consensus 30 Ls~~e~~vll~l~~~~~~~~~~PS~~~La~~~g~s~~~v~~~l~~L~~~gli~i~ 84 (128)
T 2vn2_A 30 LGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999999999999998759999999999989594999999999999988997989
No 173
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=61.31 E-value=5.4 Score=19.09 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHH------CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998999999985------8898899999998299999999999999994179864
Q gi|254780305|r 32 TQCERVRIKQSL------NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 32 ~~~~~~~Il~~L------~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.+..+-.||-.| |..--+++.|++++|++..+|...+-.|+=+|+|..-
T Consensus 30 Ls~~e~~vll~l~~~~~~g~~fPS~~~La~~~g~s~~~v~~~l~~L~~kgli~i~ 84 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9989999999999988769979899999989594999999999999988997999
No 174
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.21 E-value=5.8 Score=18.90 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-|....+|+..+|++...|+.+|-+|+=+|+|... +|.+.+.
T Consensus 176 ~~lt~~~LA~~lgisr~tvsR~l~~L~~~giI~~~-~~~i~I~ 217 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKK-KNKIIVY 217 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEEEES
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEC
T ss_conf 88689999989799999999999999988989964-9999987
No 175
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=60.53 E-value=1 Score=22.95 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHCCCC-CC-------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8799989999999858898-89-------999999829999999999999999417986
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVP-IH-------IDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p-~~-------iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
+...+.++..|++.+...+ .. +.+++...||+.......|..+|-.|.+.+
T Consensus 94 ~~~~~~d~~~il~~~~~~~~~~~~~~~~t~~~~~~~lgws~~~a~e~L~~~e~~G~l~r 152 (169)
T 1u5t_B 94 SEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLI 152 (169)
T ss_dssp SSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 89867689999999987489767776347999999929989999999999997799899
No 176
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=60.48 E-value=1.5 Score=22.13 Aligned_cols=49 Identities=6% Similarity=0.111 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHCC----CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99899999998588----988999999982-99999999999999994179864
Q gi|254780305|r 32 TQCERVRIKQSLNN----VPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 32 ~~~~~~~Il~~L~~----~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
.+..+++|++.+.. +-+|+|+|+++. +++.++|..+|-+|.=.|.|=..
T Consensus 205 ~~~~q~~Vl~~i~~~~~~~Gv~v~~I~~~l~~~~~~~v~~al~~L~~eG~IYsT 258 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYST 258 (270)
T ss_dssp ------------------------------------------------------
T ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECC
T ss_conf 778999999987436876882899999985199999999999999759889711
No 177
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=60.40 E-value=3.5 Score=20.08 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999858898-89999999829999999999999999417986479868
Q gi|254780305|r 37 VRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 37 ~~Il~~L~~~p-~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.++++.|-..| +.+.++.+.+|++..++...|-.|+=.|++++..+|+-
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~~vs~~Ta~~~l~~L~~~GiL~~~~~gr~ 349 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE 349 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99999999789843999999869899999999999997896798479975
No 178
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=59.51 E-value=6.2 Score=18.76 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+++-.+|+..+|++..+|+.+|-+|+=.|.|... +|.+.+.
T Consensus 178 ~~t~~~lA~~lg~sr~tv~r~l~~L~~~g~I~~~-~~~i~I~ 218 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREISIL 218 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEEES
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEC
T ss_conf 5059999888699899999999999978979971-9999984
No 179
>1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=58.92 E-value=4.1 Score=19.73 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH-CCCC-EEEEE
Q ss_conf 9999998588--98899999998299999---99999999999417986-4798-68981
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAP---VVYLVLLELDLAGRLCH-HPEG-KVSLT 88 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~---~v~~~LleLEL~G~i~~-~pGg-~v~l~ 88 (95)
+-.|+++|.. .|+++++|+.++|++.. .+..+|--|--.|.+.. .+|+ .|+++
T Consensus 38 el~ifd~L~~~g~p~t~~eLA~~~g~~~~~~~~l~rlL~~L~~~gll~~~~~~~~~y~~t 97 (352)
T 1fp2_A 38 EMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALT 97 (352)
T ss_dssp HTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred HCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCEECCC
T ss_conf 877477784179996899999985929256689999999999779879975988424578
No 180
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=57.22 E-value=7.8 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q ss_conf 899999998299999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVL 68 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~L 68 (95)
+.|.+|++++|++.++|+.+|
T Consensus 3 vTi~dIA~~aGVS~~TVSr~L 23 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVV 23 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHH
T ss_conf 679999999897999999997
No 181
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=56.92 E-value=8.7 Score=17.95 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999858-898899999998299999999999999994179864
Q gi|254780305|r 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
|-+++- +.-...++|.+..+.|..-|-++|-.|+..|+|++.
T Consensus 7 vRD~iAL~Gr~da~qlS~~L~~P~plv~AMLerL~~MGKieri 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999997164039999988679878999999999973576761
No 182
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=56.57 E-value=9.8 Score=17.67 Aligned_cols=30 Identities=3% Similarity=0.091 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 22 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (198)
T 3cjd_A 22 EAQIEAEGLASLRARELARQADCAVGAIYT 51 (198)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997093405799999982889321023
No 183
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=54.46 E-value=11 Score=17.37 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+..+++++|++++|++.+.++
T Consensus 24 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY 52 (199)
T 3crj_A 24 YRALREHGYADLTIQRIADEYGKSTAAVH 52 (199)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999749040779999999791999998
No 184
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.22 E-value=11 Score=17.47 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999998588-98899999998299999999999999994
Q gi|254780305|r 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLA 74 (95)
Q Consensus 36 ~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~ 74 (95)
.-.|+..|+. ...++-+|.+.++++...+..++==|-=.
T Consensus 10 AG~IW~~L~e~~~~s~~eL~k~t~lsd~e~~lAiGWLaRE 49 (82)
T 2l02_A 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARE 49 (82)
T ss_dssp HHHHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9999998720687779999988695999999987587427
No 185
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.64 E-value=11 Score=17.39 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
|..-.+|+..+|++..+|+.+|-+|+=.|++. -+|.+.+.
T Consensus 178 ~~t~~~iA~~lgisr~tvsR~l~~L~~~gii~--~~~~i~I~ 217 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAGVTV--KRNHAEIE 217 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGTEEC--CTTEEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE--ECCEEEEC
T ss_conf 88999999886998999999999999799399--79989997
No 186
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=52.57 E-value=3.4 Score=20.18 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985889889999999829------999999999999999417986
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTG------IEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tg------l~~~~v~~~LleLEL~G~i~~ 79 (95)
+--||..|...|.|--+|.+... ++.+.++.+|-.||-+|+|..
T Consensus 16 ~~~iL~~L~~~p~~GYei~k~i~~~~~~~~~~g~lY~~L~rLe~~G~I~~ 65 (117)
T 3elk_A 16 TLYILKELVKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVIS 65 (117)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 99999998618988999999999984899997648999999998898799
No 187
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=51.91 E-value=12 Score=17.15 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 38 ~~l~~~~G~~~~t~~~IA~~aGvs~~tlY~ 67 (217)
T 3hta_A 38 IRVVGQKGIAGLSHRTVAAEADVPLGSTTY 67 (217)
T ss_dssp HHHHHHHTGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998590407799999994888314876
No 188
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583}
Probab=51.82 E-value=7.8 Score=18.20 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998588988999999982------9999999999999999417986
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT------GIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t------gl~~~~v~~~LleLEL~G~i~~ 79 (95)
+-.||..|...|.|--+|.+.. .++.+.++.+|-.||=+|+|..
T Consensus 15 ~~~IL~lL~~~~~~GYei~~~l~~~~~~~~~~gslY~~L~rLe~~G~I~~ 64 (116)
T 3hhh_A 15 EGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIA 64 (116)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 99999998449988999999999848978997665999999998897699
No 189
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=51.81 E-value=12 Score=17.13 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 13 ~~lf~~~G~~~~tv~~IA~~aGvs~~tlY~ 42 (207)
T 2vke_A 13 LELLNETGIDGLTTRKLAQKLGIEQPTLYW 42 (207)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997491417899999997919769988
No 190
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=51.44 E-value=13 Score=17.09 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588--98899999998299999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+|++.|-. .-+.-|+|+..++++...+-.+|..|.-.|.|...
T Consensus 20 a~~i~~~L~~~~~~l~ee~la~~~~i~~k~vR~iL~~L~~~~lv~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHE
T ss_conf 99999999985887789999989499999999999999987962520
No 191
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=51.28 E-value=1.8 Score=21.70 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 988-99999998299999999999999994179864798689813
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+ ++.+|++..|++...|..++..|+-.|+|...+|.-+.++.
T Consensus 33 ~~LPser~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEK 77 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECC
T ss_conf 998379999999798779999999999988948997586799877
No 192
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=51.24 E-value=9 Score=17.86 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
++.-.+|+..+|.+...|+.+|-+|+=+|+|.. -||++.+-
T Consensus 217 ~lt~~~LA~~lG~sr~tvsR~l~~L~~~glI~~-~~~~I~I~ 257 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA-HGKTIVVY 257 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-CSSEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEE
T ss_conf 689999999979989999999999997991996-59999998
No 193
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=50.98 E-value=13 Score=17.05 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=24.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+..+++++|++++|++.+.++.
T Consensus 34 ~l~~~~G~~~~t~~~IA~~agvs~~tlY~ 62 (214)
T 2zb9_A 34 ELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99998593508799999997929888745
No 194
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=50.29 E-value=7.2 Score=18.39 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8988999999982999999999999999941798647
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95)
+.-...++|.+....|..-|-++|-.|+..|+|+|..
T Consensus 14 ~G~~da~qLS~~L~~PlPlv~AMLerL~aMGKierie 50 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 0740099999886798789999999998735767603
No 195
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=50.11 E-value=13 Score=16.97 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 19 ~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~ 48 (215)
T 1ui5_A 19 ADLFDRRGYESTTLSEIVAHAGVTKGALYF 48 (215)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999998591518799999986878211876
No 196
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=50.02 E-value=13 Score=16.97 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~s~~~IA~~agvs~~~~Y~ 47 (194)
T 3dpj_A 18 DELFYRQGFAQTSFVDISAAVGISRGNFYY 47 (194)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997492518899999986829126888
No 197
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A*
Probab=49.18 E-value=13 Score=17.02 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=38.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588988999999982--------99999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~~ 80 (95)
+-.||..|...|.|--+|.+.. .++.+.++.+|-.||=+|+|...
T Consensus 14 ~~~IL~lL~~~~~~GYei~~~i~~~~~~~~~i~~g~lY~~L~rL~~~GlI~~~ 66 (116)
T 3f8b_A 14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 99999998718988999999999983993168977549999999978976899
No 198
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=48.88 E-value=13 Score=16.98 Aligned_cols=31 Identities=10% Similarity=0.211 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++.-
T Consensus 17 ~~l~~~~G~~~~tl~~IA~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 17 LELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999985904066999999979098899777
No 199
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=48.67 E-value=14 Score=16.85 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++.+|++.+.++-.
T Consensus 21 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 51 (202)
T 2i10_A 21 MELFWRQGYEGTSITDLTKALGINPPSLYAA 51 (202)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999986914076999999979099999776
No 200
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=48.58 E-value=14 Score=16.84 Aligned_cols=42 Identities=5% Similarity=-0.088 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 879998999999985889889999999829999999999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
-..+.+.++.|+..--..-.+..+|++..|++.++|.+.+..
T Consensus 13 l~~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tvk~~l~R 54 (70)
T 2o8x_A 13 IADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp TTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 986999999999989990999999999989799999999999
No 201
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=48.40 E-value=14 Score=16.82 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++-.
T Consensus 28 ~~lf~~~G~~~~si~~IA~~agvs~~tiY~y 58 (212)
T 1pb6_A 28 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999985915288999999979198789787
No 202
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=48.18 E-value=12 Score=17.26 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9889999999829999999999999999417986479868981
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
-+++..+|+..+|++..+++.+|-+|+=.|+|.. -+|.+.+.
T Consensus 176 ~~~t~~~lA~~lg~s~~tvsr~l~~L~~~g~I~~-~~~~i~I~ 217 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIRL-EGKSVLIS 217 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE-ETTEEEES
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf 0789999998879899999999999998898996-39999988
No 203
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=47.67 E-value=14 Score=16.76 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 20 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (191)
T 3on4_A 20 EALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997395637799999987829446876
No 204
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=47.66 E-value=14 Score=16.76 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=34.8
Q ss_pred HHHHHHHHCC--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998588--------9889999999829999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLNN--------VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~~--------~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...|++.|-. ..++|++|++.||+....|..+|-.| |.+....|+++
T Consensus 193 ~~~i~~~L~~~~~~~~~~~~isi~dis~~T~i~~~Dii~tL~~l---~~l~~~~~~~~ 247 (280)
T 2ou2_A 193 SQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYL---NLINYYKGQYI 247 (280)
T ss_dssp HHHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHT---TCCCBCSSSBB
T ss_pred HHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHC---CCEEEECCEEE
T ss_conf 99999999972445578873869999887398899999999977---97899799489
No 205
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=47.66 E-value=14 Score=16.76 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++++|++.+.++
T Consensus 26 ~~l~~~~G~~~~t~~~IA~~aGvs~~~lY 54 (216)
T 2oi8_A 26 WEQIATAGASALSLNAIAKRMGMSGPALY 54 (216)
T ss_dssp HHHHHHHCTTSCCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999709653889999999797988999
No 206
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A*
Probab=47.50 E-value=9.4 Score=17.77 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998588--9889999999829999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...|++.|-. +.++|++|++.|++....|..+|-.|.+ +...-|+++
T Consensus 195 ~~~i~~~l~~~~~~isi~dis~~T~i~~~Dii~tL~~l~~---l~~~~g~~~ 243 (278)
T 2pq8_A 195 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLNM---VKYWKGQHV 243 (278)
T ss_dssp HHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTTC---EEC----CE
T ss_pred HHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHCCC---EEEECCCEE
T ss_conf 9999999974699706999999849985319999987797---899799289
No 207
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=47.41 E-value=13 Score=16.97 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.8
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998299999999999
Q gi|254780305|r 49 HIDDIIHHTGIEAPVVYLVL 68 (95)
Q Consensus 49 ~iD~l~~~tgl~~~~v~~~L 68 (95)
.|.+|++.+|++.++|+.+|
T Consensus 2 Ti~DIA~~aGVS~~TVSraL 21 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVI 21 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
T ss_conf 68999999896999999996
No 208
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=46.83 E-value=15 Score=16.68 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++-.
T Consensus 25 ~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 25 LRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999975913077999999979498899988
No 209
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.44 E-value=15 Score=16.65 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 998999999985889889999999829999999999999
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
+...++.|+..--++-.+..+|++..|++.+.|...+..
T Consensus 26 Lpe~qR~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l~R 64 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999991999999999989699999999999
No 210
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=46.19 E-value=15 Score=16.63 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 27 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 56 (206)
T 3kz9_A 27 LEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997294417799999987909989969
No 211
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=46.13 E-value=12 Score=17.18 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 16 ~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~ 45 (191)
T 1sgm_A 16 SRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998392507799999986919889978
No 212
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=45.94 E-value=15 Score=16.61 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++.+|++.+.++..
T Consensus 27 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 27 IELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999972913067999999979198899888
No 213
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=45.92 E-value=15 Score=16.60 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 19 ~~lf~~~G~~~~ti~~Ia~~agvs~~tiY~ 48 (203)
T 3cdl_A 19 IAEFGDRGFEITSMDRIAARAEVSKRTVYN 48 (203)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999997590507899999986859552552
No 214
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=45.44 E-value=16 Score=16.56 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|+++.|++.+.++-
T Consensus 12 ~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~ 41 (209)
T 3bqy_A 12 LDLLNESGLDTLTMRRLAQAMDVQAGALYR 41 (209)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997294516799999997948879998
No 215
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=45.01 E-value=16 Score=16.53 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 20 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~ 49 (196)
T 3col_A 20 AAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997591407799999996919988858
No 216
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=44.85 E-value=16 Score=16.51 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99899999998588988999999982999999999999
Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+...++.|+..--++-.+.++|+...|++.+.|...+.
T Consensus 23 L~~~qR~vi~L~~~~~ls~~EIA~~lgis~~~V~~~l~ 60 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999999731299999998979999999999
No 217
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=44.79 E-value=15 Score=16.75 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
++...+|+..+|++...|+.+|-+|+=+|+|.. .+|++.+.
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~L~~L~~~glI~~-~~~~I~I~ 233 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI-HKKKITVH 233 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf 525999988879999999999999997898997-49999985
No 218
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=44.78 E-value=14 Score=16.79 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++.+++++|++++|++.+.++.
T Consensus 19 ~~l~~e~G~~~~si~~Ia~~agvs~~t~Y~ 48 (193)
T 2dg8_A 19 LDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997590407699999998909999987
No 219
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=44.60 E-value=14 Score=16.81 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 99899-99999858898899999998299999999999
Q gi|254780305|r 32 TQCER-VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68 (95)
Q Consensus 32 ~~~~~-~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~L 68 (95)
+++++ +.+...+. ...++-+|++..|++.++++..|
T Consensus 6 Lt~~q~~~a~~l~~-~G~s~~~iA~~~gVsr~TlYryl 42 (52)
T 1jko_C 6 INKHEQEQISRLLE-KGHPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp SCTTHHHHHHHHHH-TTCCHHHHHHTTSCCHHHHHHHS
T ss_pred CCHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999999-78989999999797999999985
No 220
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.40 E-value=16 Score=16.47 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++.+|+++.|++.+.++.
T Consensus 29 ~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~ 58 (243)
T 2g7l_A 29 VALMRAEGLEKVTMRRLAQELDTGPASLYV 58 (243)
T ss_dssp HHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 999998094307899999986899553200
No 221
>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=44.08 E-value=11 Score=17.41 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998588988999999982--------9999999999999999417986
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~ 79 (95)
+-.||..|...|.+=-+|.+.. .++.+.++.+|-.||=+|+|..
T Consensus 43 ~~~IL~lL~~~p~~GYeI~k~i~~~~~~~~~is~gslYp~L~rLe~~GlI~s 94 (145)
T 1xma_A 43 DTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKS 94 (145)
T ss_dssp HHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 9999999841898899999999998499543787761999999997896699
No 222
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.91 E-value=14 Score=16.91 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8988999999982999999999999
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
.-.+.+.+|++.+|++.++|+.+|-
T Consensus 8 ~k~vTikdIA~~agVS~aTVSr~Ln 32 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9997699999998959999999978
No 223
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=43.84 E-value=16 Score=16.57 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+..-.+|+..+|.+...|+.+|-+|+=.|.|... ||++.+-
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l~~L~~~g~I~~~-~~~i~I~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK-GKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEE
T ss_conf 7789999988799999999999999988989977-9999995
No 224
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=43.54 E-value=17 Score=16.40 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+..+++++|++++|++.+.++-
T Consensus 21 ~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~ 50 (216)
T 3f0c_A 21 QKRFAHYGLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp HHHHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997490307899999985988527987
No 225
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=43.47 E-value=17 Score=16.39 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+..+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 18 RTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHC
T ss_conf 999997495747799999987829213311
No 226
>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1mja_A* 1mjb_A* 1mj9_A*
Probab=43.47 E-value=9.8 Score=17.68 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9999998588--9889999999829999999999999999417986479868
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
...|++.|-. ..++|++|++.|++....+..+|-.|.+ +....|+++
T Consensus 197 ~~~il~~l~~~~~~isi~dis~~T~i~~~DIi~tL~~l~~---l~~~~g~~~ 245 (278)
T 1fy7_A 197 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNI---LRYYKGQHI 245 (278)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHHTC---EEEETTEEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCC---EEEECCEEE
T ss_conf 9999999986699820999998729998999998876798---999799689
No 227
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=43.00 E-value=12 Score=17.23 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
|+.-.+|+..+|.+..+|+.+|-+|+=.|+|.... |++.+.
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~I~ 179 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATAY-RRVYLL 179 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET-TEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CEEEEC
T ss_conf 88799999887997999999999999889899709-999997
No 228
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=42.97 E-value=17 Score=16.35 Aligned_cols=39 Identities=18% Similarity=0.025 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999899999998588988999999982999999999999
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
.+.+.++.|+..--+.-.+..+|+...|++.+.|...+-
T Consensus 37 ~L~~~~r~vi~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 799999999999999399999999998969999999999
No 229
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=42.79 E-value=17 Score=16.33 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
..++..-|+.-+++++|++++|++.+.++.
T Consensus 22 ~~l~~~~G~~~~t~~~IA~~aGvs~~~ly~ 51 (200)
T 2hyj_A 22 AEIASEEGLDGITIGRLAEELEMSKSGVHK 51 (200)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997391518899999987819788955
No 230
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=42.77 E-value=17 Score=16.33 Aligned_cols=30 Identities=10% Similarity=0.379 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 18 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY~ 47 (199)
T 2o7t_A 18 CNLYRTHHHDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997491407799999986869131776
No 231
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.58 E-value=1.3 Score=22.50 Aligned_cols=44 Identities=9% Similarity=-0.033 Sum_probs=38.5
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 988-99999998299999999999999994179864798689813
Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95)
Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95)
+.+ ++.+|+...|.+..+|..++-.|+-.|+|...+|.=+.++.
T Consensus 33 ~~LPs~~~La~~~~VSr~tVr~Al~~L~~~G~i~~~~g~G~~V~~ 77 (126)
T 3ic7_A 33 GRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFVAS 77 (126)
T ss_dssp SEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEECT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEEECC
T ss_conf 998689999999698989999999999988947997170789837
No 232
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=42.51 E-value=18 Score=16.31 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++++|++.+.++.
T Consensus 41 ~l~~~~G~~~~si~~IA~~agvs~~tiY~ 69 (222)
T 3bru_A 41 EHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp HHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 99998590407799999986899026988
No 233
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=42.40 E-value=0.68 Score=23.94 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999998588-9889999999829999999999999999417986
Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
+|.--.+|+++|.. .-.++-+|++.+|++.++|..-+-.||=+|.|+.
T Consensus 11 lD~~D~~Il~~L~~d~R~s~~~IA~~lg~S~~tV~~Ri~rL~~~GiI~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 4499999999999858999999999989099999999999995796058
No 234
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=42.34 E-value=18 Score=16.29 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+..+++++|++++|++.+.++.
T Consensus 22 ~~lf~~~G~~~~t~~~Ia~~agvs~~tlY~ 51 (205)
T 1rkt_A 22 KTVFKRKGFELTTMKDVVEESGFSRGGVYL 51 (205)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999997491518799999986898574115
No 235
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=42.15 E-value=18 Score=16.27 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++-.
T Consensus 24 ~~lf~~~G~~~~si~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 24 LRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999974914065999999979398899988
No 236
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=41.74 E-value=13 Score=17.06 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
..++..-|++-+++++|++++|++.+.++
T Consensus 17 ~~l~~~~G~~~~si~~Ia~~agvs~~~~Y 45 (180)
T 2fd5_A 17 TQALLERGAVEPSVGEVMGAAGLTVGGFY 45 (180)
T ss_dssp HHHHHHHTTTSCCHHHHHHHTTCCGGGGG
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 99998709440679999998688976176
No 237
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=41.15 E-value=18 Score=16.19 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 24 ~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 24 FHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997194638799999997909999988
No 238
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=41.03 E-value=11 Score=17.33 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=38.6
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHH-HHHHHHHHHHHHHH
Q ss_conf 899999998588-988999999982999999-99999999994179
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPV-VYLVLLELDLAGRL 77 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~-v~~~LleLEL~G~i 77 (95)
.-+.+|++.|-. .|...=.|+...|+..++ |...|-.||=++.+
T Consensus 10 ~~kekI~~fL~~~gps~AL~IAKnlGl~takdVN~~Ly~lekqhll 55 (72)
T 3eyi_A 10 QREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLL 55 (72)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8899999999966982588999885823177765999999983277
No 239
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=40.96 E-value=16 Score=16.53 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9998999999985889889999999829999999999999
Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
..|.....|..+|.-.-+++-.|++..|++.+++..+|..
T Consensus 6 ~~DWh~adI~AaL~krG~sLa~lsr~~Gls~~tl~nal~r 45 (74)
T 1neq_A 6 ARDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp SSSCCHHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 7898999999999996896999999909988999998827
No 240
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=40.86 E-value=19 Score=16.16 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 45 ~~l~~~~G~~~~T~~~IA~~aGvs~~tiY~ 74 (221)
T 3g7r_A 45 TRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp HHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998291408799999998919989998
No 241
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=40.84 E-value=19 Score=16.16 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++..
T Consensus 22 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 52 (192)
T 2fq4_A 22 YELLLESGFKAVTVDKIAERAKVSKATIYKW 52 (192)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999983944077999999989199888534
No 242
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=40.80 E-value=14 Score=16.76 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEEE
Q ss_conf 898899999998299999999999999994179864---79868981
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGKVSLT 88 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~---pGg~v~l~ 88 (95)
+.-++++.|++..+++...+-..|..|=..|+|..- ..|.|...
T Consensus 28 Y~~Isl~~lA~~l~i~~~~ve~~l~~mI~~~~i~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred CCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEC
T ss_conf 05545999999969699999999999986792799990899989977
No 243
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=40.72 E-value=19 Score=16.15 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 15 ~~lf~~~G~~~~t~~~Ia~~agvs~~tlY~ 44 (228)
T 3nnr_A 15 LELFNDKGERNITTNHIAAHLAISPGNLYY 44 (228)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997393527799999988909989998
No 244
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=40.20 E-value=19 Score=16.10 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 12 KELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997693306799999997909998814
No 245
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=40.12 E-value=2.2 Score=21.18 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=38.6
Q ss_pred HHHHHH-HHCC-CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999-8588-988-99999998299999999999999994179864798689
Q gi|254780305|r 36 RVRIKQ-SLNN-VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95)
Q Consensus 36 ~~~Il~-~L~~-~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95)
+.+|.+ .+.+ +.+ +..+|++..|.+..+|-.+|-.|+-.|.|.+..|.-..
T Consensus 26 ~~~I~~G~~~~G~~LPsE~~La~~~~VSR~TvR~Al~~L~~eGlI~~~~G~Gt~ 79 (247)
T 2ra5_A 26 EAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGVGTQ 79 (247)
T ss_dssp ------------------------------------------CEEEEEC-----
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEE
T ss_conf 999975998991999389999988697989999999999976985865895699
No 246
>1z67_A Hypothetical protein S4005; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.45A {Shigella flexneri 2a str} SCOP: a.259.1.1
Probab=39.89 E-value=19 Score=16.08 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 79998999999985889889999999829999999999999999417986479868
Q gi|254780305|r 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.|.+++ +|-++++. -.|++++.++|++..++...|.+.==+=+=+..|+|.+
T Consensus 62 ~pIs~~--qi~~~lg~--~~l~~lA~~~Gl~~~~~~~~La~~LP~~VD~lTP~G~l 113 (135)
T 1z67_A 62 QSVSGE--QLESALGT--NAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEV 113 (135)
T ss_dssp CCCCHH--HHHHHHCH--HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTSCC
T ss_pred CCCCHH--HHHHHHCH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 998999--99988197--99999999989099999999999977999701989989
No 247
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=39.53 E-value=20 Score=16.04 Aligned_cols=31 Identities=6% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.++++.-|++-+++++|+++.|++.+.|+-.
T Consensus 16 ~~lf~~~G~~~~T~~~IA~~aGVs~~~lY~h 46 (234)
T 2opt_A 16 LGILDAEGLDALSMRRLAQELKTGHASLYAH 46 (234)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999972944278999999978588899998
No 248
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=39.52 E-value=20 Score=16.04 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++..
T Consensus 58 ~~lf~e~G~~~vS~~~IA~~AGVS~~t~Y~~ 88 (260)
T 2of7_A 58 YGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999983945287999999969679799998
No 249
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=39.20 E-value=20 Score=16.01 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 18 ~~l~~e~G~~~~t~~~IA~~agvs~~tlY~ 47 (202)
T 2d6y_A 18 VAEFARHGIAGARIDRIAAEARANKQLIYA 47 (202)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997590408799999997909889968
No 250
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=38.89 E-value=20 Score=15.99 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=24.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 18 ~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 47 (206)
T 1vi0_A 18 VEVIAENGYHQSQVSKIAKQAGVADGTIYL 47 (206)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999987390306799999997949999999
No 251
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=38.67 E-value=20 Score=15.97 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=24.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++++|++.+.++-
T Consensus 28 ~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 56 (218)
T 3gzi_A 28 NLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997491416499999987919768887
No 252
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=38.57 E-value=20 Score=15.96 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 21 ~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~ 50 (210)
T 2xdn_A 21 ERAFYKRGVARTTLADIAELAGVTRGAIYW 50 (210)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997591407799999997929889988
No 253
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=38.50 E-value=5.4 Score=19.09 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999982999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+.|.+|++.+|++.++|+.+|=
T Consensus 5 vTi~dIA~~aGVS~~TVSraLn 26 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 1199999998979999999968
No 254
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=38.45 E-value=20 Score=15.95 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 17 ~~l~~~~G~~~~t~~~IA~~agvs~~~lY~ 46 (192)
T 2zcm_A 17 ITLFSEKGYDGTTLDDISKSVNIKKASLYY 46 (192)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997492627799999988909889978
No 255
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=38.43 E-value=13 Score=16.98 Aligned_cols=29 Identities=7% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|+++.|++...|+
T Consensus 26 ~~lf~e~G~~~~t~~~IA~~aGvs~~tlY 54 (237)
T 2hxo_A 26 VELLDTVGERGLTFRALAERLATGPGAIY 54 (237)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 99999839352779999998784956530
No 256
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=38.31 E-value=19 Score=16.10 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHCCCC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 799989999999858898-----89999999829999999999999999417
Q gi|254780305|r 30 EYTQCERVRIKQSLNNVP-----IHIDDIIHHTGIEAPVVYLVLLELDLAGR 76 (95)
Q Consensus 30 ~~~~~~~~~Il~~L~~~p-----~~iD~l~~~tgl~~~~v~~~LleLEL~G~ 76 (95)
+.+++.+++|.+.+-..| .+|.+|+++||.+.+.|....=.|-..|+
T Consensus 17 ~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf~gf 68 (111)
T 2o3f_A 17 HXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGF 68 (111)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSH
T ss_pred CCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCH
T ss_conf 4179999999999995924764378999998979898799999999277989
No 257
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=38.27 E-value=21 Score=15.93 Aligned_cols=30 Identities=7% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 12 ~~l~~~~G~~~~t~~~Ia~~agvs~~tiY~ 41 (179)
T 2eh3_A 12 KELFFEKGYQGTSVEEIVKRANLSKGAFYF 41 (179)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999997392507699999987849652144
No 258
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=38.15 E-value=21 Score=15.92 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 21 ~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 50 (212)
T 2ras_A 21 QAIVEERGGAGLTLSELAARAGISQANLSR 50 (212)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999998491407799999983889454411
No 259
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=37.99 E-value=21 Score=15.91 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++.+++++|++++|++.+.++.
T Consensus 22 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 22 LDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999987095517599999987929999988
No 260
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.92 E-value=21 Score=15.90 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|+++.|++.+.++.
T Consensus 50 ~~l~~e~G~~~~T~~~IA~~AgvS~~tlY~ 79 (225)
T 2id3_A 50 GDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHCC
T ss_conf 999998493407799999997909888710
No 261
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=37.92 E-value=21 Score=15.90 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 53 ~~l~~~~G~~~~ti~~IA~~aGvS~~tlY~ 82 (229)
T 3bni_A 53 ADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998490106799999995969999999
No 262
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=37.42 E-value=19 Score=16.15 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88999999982999999999999999941798647986898
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
|....+|+..+|.+...++..|-.|+=.|.|... +|.+.+
T Consensus 146 ~~t~~~iA~~lg~sr~tv~r~l~~L~~~g~I~~~-~~~i~I 185 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSG-YGKIQL 185 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEE
T ss_conf 8879999989798899999999999988999974-999999
No 263
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=37.07 E-value=22 Score=15.82 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++..
T Consensus 49 ~~l~~e~G~~~~T~~~Ia~~AGvs~~t~Y~~ 79 (214)
T 2guh_A 49 GRAFATRPYREITLKDIAEDAGVSAPLIIKY 79 (214)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999983924077999999979198799998
No 264
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.89 E-value=22 Score=15.81 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++.+|++.+.++.
T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 48 (203)
T 2np5_A 19 FDVAAESGLEGASVREVAKRAGVSIGAVQH 48 (203)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997290307799999997909887701
No 265
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=36.88 E-value=22 Score=15.81 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|+++.|++.+.++-
T Consensus 35 ~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 35 LDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997494537599999998928858989
No 266
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=36.88 E-value=22 Score=15.81 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=24.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++.+|++.+.++.
T Consensus 42 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 42 ELFREKGYYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp HHHHHTCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 99998493517899999981989341024
No 267
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=36.69 E-value=22 Score=15.79 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 24 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 53 (204)
T 2ibd_A 24 ATLFAERGLRATTVRDIADAAGILSGSLYH 53 (204)
T ss_dssp HHHHHHHCSTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997492407799999986889265999
No 268
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=36.61 E-value=6 Score=18.84 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88999999982999999999999999941798647986898
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95)
|...++|+..+|++...|+.+|-+|+=.|.|... ||.+.+
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l~~L~~~g~I~~~-~~~i~I 203 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEKH-GRRIKV 203 (213)
T ss_dssp -----------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEE
T ss_conf 5689999999798999999999999978989987-999999
No 269
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=36.44 E-value=16 Score=16.54 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++.+|++.+.++.
T Consensus 23 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 23 SLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99988697407699999997978777436
No 270
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=36.38 E-value=22 Score=15.76 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..=|++-+++++|++++|++.+.++-
T Consensus 22 ~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~ 51 (211)
T 3bhq_A 22 TAAFISKGYDGTSMEEIATKAGASKQTVYK 51 (211)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998591507799999985888405877
No 271
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=36.24 E-value=22 Score=15.75 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|+..+|++.+.++.
T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~ 46 (197)
T 2gen_A 17 LACFSEHGVDATTIEMIRDRSGASIGSLYH 46 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997592517799999985839211345
No 272
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=36.22 E-value=22 Score=15.75 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++.+|++.+.++.
T Consensus 17 ~~l~~~~G~~~~t~~~IA~~aGvs~~~lY~ 46 (235)
T 2fbq_A 17 EQLFAEKGFAETSLRLITSKAGVNLAAVNY 46 (235)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998590407799999997939889999
No 273
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=36.19 E-value=22 Score=15.75 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 21 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~ 50 (210)
T 2wui_A 21 ERVFLEKGVGTTAMADLADAAGVSRGAVYG 50 (210)
T ss_dssp HHHHHHSCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999997591617599999987879774444
No 274
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=36.05 E-value=22 Score=15.73 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=24.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++.+|++.+.++.
T Consensus 35 ~l~~~~G~~~~ti~~IA~~agvs~~tlY~ 63 (216)
T 1t56_A 35 NLLEDRPLADISVDDLAKGAGISRPTFYF 63 (216)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHCCCCHHHHHH
T ss_conf 99997092407899999883999999957
No 275
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.99 E-value=20 Score=15.95 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 98899999998299999999999
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVL 68 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~L 68 (95)
....+.+|++++|++.++|+.+|
T Consensus 8 ~~~Tl~diA~~agVS~~TVsraL 30 (366)
T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAY 30 (366)
T ss_dssp CTTHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 98639999999887999999996
No 276
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=35.95 E-value=23 Score=15.72 Aligned_cols=30 Identities=13% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHHHHH-HCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998-588988999999982999999999
Q gi|254780305|r 37 VRIKQS-LNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~-L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++.. -|++.+++++|+++.|++.+.++.
T Consensus 15 ~~lf~~~~G~~~~T~~~IA~~aGvs~~~lY~ 45 (220)
T 1z0x_A 15 FSLLEKSPTLEQLSMRKVAKQLGVQAPAIYW 45 (220)
T ss_dssp HHHHHHSCCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999880895316799999996967878999
No 277
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=35.88 E-value=23 Score=15.72 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++.+++++|++++|++.+.++.
T Consensus 20 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 49 (194)
T 2nx4_A 20 WRLIAARGIEAANMRDIATEAGYTNGALSH 49 (194)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997591416599999987909999943
No 278
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=35.59 E-value=23 Score=15.69 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|+++.|++.+.++.
T Consensus 20 ~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 49 (197)
T 2f07_A 20 IEVISEKGLDKASISDIVKKAGTAQGTFYL 49 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 999997391407699999987869115888
No 279
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=35.58 E-value=23 Score=15.69 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHCCC-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9998999999985889-----889999999829999999999999999417
Q gi|254780305|r 31 YTQCERVRIKQSLNNV-----PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76 (95)
Q Consensus 31 ~~~~~~~~Il~~L~~~-----p~~iD~l~~~tgl~~~~v~~~LleLEL~G~ 76 (95)
..+..+++|.+.+-.. -.++.+|+++||.+.+.|....=.|-.+|.
T Consensus 14 ~ls~se~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf~kklGf~gf 64 (107)
T 3iwf_A 14 YFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGF 64 (107)
T ss_dssp GSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHH
T ss_pred HCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCH
T ss_conf 639999999999995999997765999998979899899999999588989
No 280
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=35.48 E-value=23 Score=15.68 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++-
T Consensus 14 ~~l~~~~G~~~~s~~~IA~~AGvs~~siY~ 43 (185)
T 2yve_A 14 IDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHCC
T ss_conf 999998690517799999986838531306
No 281
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=35.28 E-value=23 Score=15.66 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=25.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..=|+.-+++++|++++|++.+.++
T Consensus 18 ~~l~~~~G~~~~s~~~IA~~agvs~~tlY 46 (183)
T 1zk8_A 18 AEIADANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999749250769999998891988998
No 282
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=34.50 E-value=6.8 Score=18.54 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 88999999982999999999999
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
-+.|-+|++.+|++.++|+.+|=
T Consensus 5 ~~Ti~DIA~~aGVS~~TVSraLn 27 (332)
T 2o20_A 5 TTTIYDVARVAGVSMATVSRVVN 27 (332)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 87699999997979999999968
No 283
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=34.21 E-value=24 Score=15.57 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=22.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999985889889999999829999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
+|-+.=...-+++++|++++|++.+.++.+
T Consensus 14 rir~lR~~~gltl~eLA~~~GvS~~~lS~i 43 (198)
T 2bnm_A 14 LLKDRREQVKMDHAALASLLGETPETVAAW 43 (198)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999985999999998879799999986
No 284
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=34.15 E-value=24 Score=15.56 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 88988999999982999999999
Q gi|254780305|r 44 NNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 44 ~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
|++-+++++|++.+|++.+.++.
T Consensus 37 G~~~~Sv~dIa~~AgVs~~t~Y~ 59 (185)
T 3o60_A 37 TFESISIKDLCEQARVSRATFYR 59 (185)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCH
T ss_conf 93108799999987888666223
No 285
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.97 E-value=24 Score=15.54 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 889999999829999999999999999417986479868981
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+....+|+...|.+...|+..|-+|+=.|.|... +|.+.+.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~-~~~i~I~ 209 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKITIL 209 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCEEEEC
T ss_conf 8999999999798999999999999988989972-9999988
No 286
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=33.53 E-value=7.2 Score=18.41 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999982999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+.|.||++.+|++.++|+.+|=
T Consensus 4 ~Ti~DIA~~aGVS~~TVSrvLn 25 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLS 25 (338)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 8899999997979999999968
No 287
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.47 E-value=25 Score=15.50 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 19 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 48 (209)
T 2gfn_A 19 LALIAREGISAVTTRAVAEESGWSTGVLNH 48 (209)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997291307699999997909999974
No 288
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=33.30 E-value=25 Score=15.48 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=22.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++ +++++|++++|++.+.++.
T Consensus 27 ~l~~~~G~~-~T~~~IA~~aGvs~~tlY~ 54 (199)
T 2rek_A 27 AEVARHGAD-ASLEEIARRAGVGSATLHR 54 (199)
T ss_dssp HHHHHHGGG-CCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCC-CCHHHHHHHHCCCHHHHHH
T ss_conf 999986978-8899999997919999987
No 289
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=33.30 E-value=25 Score=15.48 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=24.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++++|++.+.++.
T Consensus 37 ~l~~~~G~~~~t~~~IA~~agvs~~tiY~ 65 (217)
T 3mvp_A 37 DLFSDKTYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99987193427899999988909889999
No 290
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=33.24 E-value=15 Score=16.61 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++.+|++.+.++.
T Consensus 24 ~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~ 53 (156)
T 3ljl_A 24 VDQLLRLGYDKMSYTTLSQQTGVSRTGISH 53 (156)
T ss_dssp HHHHHHTHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999987190307799999986988869989
No 291
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=33.09 E-value=22 Score=15.81 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=44.3
Q ss_pred CCCCHHHH--HHHHHHCCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHC----CC-----CEEEEEC
Q ss_conf 79998999--99998588988999999982-------99999999999999994179864----79-----8689813
Q gi|254780305|r 30 EYTQCERV--RIKQSLNNVPIHIDDIIHHT-------GIEAPVVYLVLLELDLAGRLCHH----PE-----GKVSLTM 89 (95)
Q Consensus 30 ~~~~~~~~--~Il~~L~~~p~~iD~l~~~t-------gl~~~~v~~~LleLEL~G~i~~~----pG-----g~v~l~~ 89 (95)
..++.+-. =||..|...+.|=-+|.+.. .++.+.++.+|-.||=+|.|... .+ .+|+++.
T Consensus 38 ~~l~~~lav~~IL~lL~~~~~yGYeI~q~le~~~~~~~is~GtLYp~L~rLe~~GlI~s~~~~~e~~G~~RK~Y~ITe 115 (148)
T 2zfw_A 38 HYLSKELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 115 (148)
T ss_dssp EECCHHHHHHHHHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESS
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECH
T ss_conf 010018899999999807998899999999998299776775418999999988984888633477898873898698
No 292
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=33.08 E-value=25 Score=15.46 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++++|++.+.++.
T Consensus 27 ~~l~~~~G~~~~si~~IA~~agvs~~tlY~ 56 (208)
T 3cwr_A 27 QRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999998691507799999994899664035
No 293
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=32.94 E-value=25 Score=15.45 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 9999858898899999998299999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
+++..-|++-+++++|++++|++.+.++
T Consensus 22 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 49 (203)
T 3b81_A 22 DIFIANGYENTTLAFIINKLGISKGALY 49 (203)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 9999729241779999999790999997
No 294
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=32.56 E-value=24 Score=15.59 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999985889889999999829999999999999999417986
Q gi|254780305|r 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 34 ~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95)
-+++.-|..|-..-.+.++|+++.|.+.+.|+..|--++|-..|..
T Consensus 39 ~e~A~~~~~l~~~g~t~~~iA~~lg~s~~~V~~~l~l~~lp~~v~~ 84 (178)
T 1r71_A 39 REIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIAD 84 (178)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999981788999999969999999999998069999999
No 295
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=32.56 E-value=18 Score=16.27 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=31.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH----------HHHHHHHHHHHHHC
Q ss_conf 999998588988999999982999999999----------99999994179864
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL----------VLLELDLAGRLCHH 80 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~----------~LleLEL~G~i~~~ 80 (95)
.+++..-|+.-+++++|++.+|++.+.++- .+++-.+...+...
T Consensus 40 ~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~Ll~a~~~~~~~~~~~~~ 93 (226)
T 2pz9_A 40 KEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAERETTALIEAT 93 (226)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998592418899999996938757978859999999999999999998865
No 296
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=32.42 E-value=11 Score=17.38 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++.+++++|++++|++.+.++
T Consensus 23 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY 51 (210)
T 2qco_A 23 LELFLTKGYQETSLSDIIKLSGGSYSNIY 51 (210)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHCTTCTTCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999749152879999998687840688
No 297
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=32.37 E-value=26 Score=15.39 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+.-+++++|++++|++.+.++..
T Consensus 22 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~y 52 (197)
T 2hyt_A 22 RKVFSERGYADTSMDDLTAQASLTRGALYHH 52 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 9999986915187999999838592406550
No 298
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=31.98 E-value=19 Score=16.12 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++++|++.+.++
T Consensus 24 ~~lf~e~G~~~~t~~~Ia~~agvs~~tlY 52 (203)
T 3ccy_A 24 AAMFARQGYSETSIGDIARACECSKSRLY 52 (203)
T ss_dssp HHHHHHTCTTTSCHHHHHHHTTCCGGGGT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCH
T ss_conf 99999849452789999998589867730
No 299
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=31.29 E-value=27 Score=15.29 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 899999998588-9889999999829999999999999999417986479868
Q gi|254780305|r 34 CERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95)
Q Consensus 34 ~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95)
.-...||..|-. .|+.+.+|+..+|++..+|.++|-++ +.++.-.-|.+
T Consensus 22 ~~~~~llr~la~G~pv~~~~LA~~~~~~~e~v~~~L~~~---~~~e~D~~G~I 71 (220)
T 3f2g_A 22 DLLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQA---TSTEYDKDGNI 71 (220)
T ss_dssp HHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHC---TTCEECTTSCE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHC---CCCEECCCCCE
T ss_conf 799999999977999999999988299899999999867---98468899878
No 300
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=31.20 E-value=19 Score=16.07 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|+..+++++|++++|++.+.++-.
T Consensus 17 ~~lf~~~G~~~~ti~~IA~~agvs~~tiY~~ 47 (186)
T 2jj7_A 17 KKKFGERGYEGTSIQEIAKEAKVNVAMASYY 47 (186)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999985914177999999869698899778
No 301
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=31.19 E-value=27 Score=15.28 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=23.3
Q ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 9998588988999999982999999999
Q gi|254780305|r 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 39 Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
++..-|++-+++++|++.+|++.+.++.
T Consensus 36 l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 63 (214)
T 2oer_A 36 VLASEGAQRFTTARVAERAGVSIGSLYQ 63 (214)
T ss_dssp C------CCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9997494517799999998909989998
No 302
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=31.17 E-value=27 Score=15.28 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99985889889999999829999999999999
Q gi|254780305|r 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 39 Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
|.+.++..++.+++|+...|++...+....-+
T Consensus 12 i~~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~ 43 (107)
T 2k9s_A 12 ISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99756799979999999989299999999999
No 303
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=30.99 E-value=27 Score=15.26 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+..+++++|+++.|++.+.++-
T Consensus 18 ~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 47 (206)
T 3dew_A 18 TELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998592417899999996959889988
No 304
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=30.97 E-value=20 Score=15.96 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++-.
T Consensus 28 ~~lf~~~G~~~~s~~~IA~~aGvs~~sly~~ 58 (251)
T 3npi_A 28 LSLFSELGFSDAKLEAIAKKSGMSKRMIHYH 58 (251)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999986925288999999979496678886
No 305
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.95 E-value=20 Score=16.04 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
..++..-|++-+++++|++++|++.+.++..
T Consensus 13 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~y 43 (208)
T 2g3b_A 13 ATAIAQRGIRGLRVNDVAEVAGVSPGLLYYH 43 (208)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999975915077999999979299999888
No 306
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=30.87 E-value=28 Score=15.25 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99999998588988999999982999999999
Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.-.+++..-|++-+++++|+++.|++.+.++.
T Consensus 38 aA~~lf~~~G~~~~si~~IA~~Agvs~~tiY~ 69 (230)
T 2iai_A 38 VAVQVFIERGYDGTSMEHLSKAAGISKSSIYH 69 (230)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHC
T ss_conf 99999998592627299999985829101530
No 307
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=30.41 E-value=28 Score=15.21 Aligned_cols=30 Identities=7% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 999985889889999999829999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
+++..-|+.-+++++|++++|++.+.++..
T Consensus 33 ~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 62 (207)
T 3bjb_A 33 ELATEKELARVQMHEVAKRAGVAIGTLYRY 62 (207)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHC
T ss_conf 999974935277999999989099886131
No 308
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=30.40 E-value=28 Score=15.21 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf 999858-898899999998299999999999999994179864---798689813799
Q gi|254780305|r 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGKVSLTMHLP 92 (95)
Q Consensus 39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~---pGg~v~l~~~~~ 92 (95)
.++.+- ..-+.+|+|+.+-++....+..-+-+||-.|+|.-. -|.++-++---|
T Consensus 12 FI~~Ik~~Kvv~LedLA~~F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s~~ 69 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP 69 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC
T ss_pred HHHHHHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCC
T ss_conf 9999998787639999988199759999999999987986557858988799758999
No 309
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=30.40 E-value=15 Score=16.63 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 13 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~ 42 (189)
T 3geu_A 13 ITLFSEKGYDGTTLDDIAKSVNIKKASLYY 42 (189)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTCCHHHHTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997593648699999987909988700
No 310
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.23 E-value=28 Score=15.19 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 88799989999999858898899999998299999999999999
Q gi|254780305|r 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71 (95)
Q Consensus 28 ~p~~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleL 71 (95)
....+++-|.+|+..+. .-.+..+|++..+++..+|...+-.+
T Consensus 18 ~~~~LT~rE~~vl~lla-~G~s~~eIA~~L~iS~~TV~~~~~~i 60 (82)
T 1je8_A 18 DVNQLTPRERDILKLIA-QGLPNKMIARRLDITESTVKVHVKHM 60 (82)
T ss_dssp CGGGSCHHHHHHHHHHT-TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 73419999999999999-28999999989795999999999999
No 311
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=30.07 E-value=28 Score=15.18 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|++.+|++.+.++.
T Consensus 21 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~ 50 (196)
T 3he0_A 21 EQLIAESGFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 999997395637799999986899775402
No 312
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=29.75 E-value=29 Score=15.14 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++.+|++.+.++.
T Consensus 33 ~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~ 62 (231)
T 2zcx_A 33 RELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997492406799999997919889978
No 313
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=29.65 E-value=16 Score=16.52 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++-.
T Consensus 15 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 45 (202)
T 2id6_A 15 VEVFGKKGYDRATTDEIAEKAGVAKGLIFHY 45 (202)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCTHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC
T ss_conf 9999872904164999999879099999840
No 314
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcription regulatory protein, plasmid, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=29.51 E-value=26 Score=15.41 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 898899999998299999999999999994179864798
Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
..|+-.-+|+-.+||++-++.+-|-+|+-.|.++-.-.|
T Consensus 22 ~~PvktR~IADaaglsiYq~r~YL~~L~~~gvvEk~naG 60 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 897213333434242099999999999984664113589
No 315
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=29.49 E-value=28 Score=15.25 Aligned_cols=29 Identities=10% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|+.-+++++|++.+|++.+.++-
T Consensus 15 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 15 RLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 99997492406799999984899687064
No 316
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=29.32 E-value=29 Score=15.10 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++.
T Consensus 23 ~~l~~~~G~~~~t~~~IA~~aGvs~~tlY~ 52 (231)
T 2qib_A 23 LDLFSRRSPDEVSIDEIASAAGISRPLVYH 52 (231)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997394507799999997939889988
No 317
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=28.90 E-value=30 Score=15.06 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=24.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++.+++++|+++.|++.+.++.
T Consensus 52 ~lf~~~G~~~~sv~~IA~~AGvs~~t~Y~ 80 (273)
T 3c07_A 52 RLFQERGYDRTTMRAIAQEAGVSVGNAYY 80 (273)
T ss_dssp HHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997294417899999998919999999
No 318
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=28.68 E-value=24 Score=15.62 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=22.2
Q ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 998588988999999982999999999
Q gi|254780305|r 40 KQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 40 l~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+..-|++-+++++|+++.|++.+.++-
T Consensus 57 ~~e~G~~~~Tl~~IA~~aGvs~~tlY~ 83 (256)
T 3g1l_A 57 LEDRPLADISVDDLAKGAGISRPTFYF 83 (256)
T ss_dssp TTTSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 998394517699999998909999988
No 319
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=28.32 E-value=22 Score=15.77 Aligned_cols=31 Identities=3% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 9999985889889999999829999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95)
.+++..-|++-+++++|++++|++.+.++..
T Consensus 18 ~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 48 (195)
T 3frq_A 18 TVVLKRCGPIEFTLSGVAKEVGLSRAALIQR 48 (195)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 9999975913077999999878982217873
No 320
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=27.70 E-value=31 Score=14.94 Aligned_cols=30 Identities=7% Similarity=0.189 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|+++.|++.+.++.
T Consensus 39 ~~l~~e~G~~~~t~~~IA~~aGVs~~tlY~ 68 (241)
T 2hxi_A 39 AELLLAGDAETFSVRKLAASLGTDSSSLYR 68 (241)
T ss_dssp HHHHSSSSCCCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997291305399999997908889999
No 321
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=27.68 E-value=31 Score=14.94 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=32.4
Q ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHH------HHHHHCCCCEEEEECC
Q ss_conf 5889889999999829--9999999999999994------1798647986898137
Q gi|254780305|r 43 LNNVPIHIDDIIHHTG--IEAPVVYLVLLELDLA------GRLCHHPEGKVSLTMH 90 (95)
Q Consensus 43 L~~~p~~iD~l~~~tg--l~~~~v~~~LleLEL~------G~i~~~pGg~v~l~~~ 90 (95)
.+.+|+++++|++.++ ++...+..++-+|.-. |+-...-||.|++...
T Consensus 18 as~~pls~~~la~~~~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~g~~l~tk 73 (162)
T 1t6s_A 18 SSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTE 73 (162)
T ss_dssp HCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEEC
T ss_pred HCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEC
T ss_conf 63898899999998665899999999999999998717985699996898899977
No 322
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.47 E-value=11 Score=17.51 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9889999999829999999999999
Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
-.+.+.+|++.+|++.++|+.+|=.
T Consensus 11 k~vTikdIA~~aGVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 11 RPVTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9976999999988599999999689
No 323
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=27.21 E-value=18 Score=16.20 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++++|++.+.++
T Consensus 23 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY 51 (217)
T 3nrg_A 23 LDEFAQNDYDSVSINRITERAGIAKGSFY 51 (217)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCTTGGG
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999739240779999998588823588
No 324
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=26.93 E-value=28 Score=15.19 Aligned_cols=30 Identities=0% Similarity=-0.051 Sum_probs=24.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+.-+++++|+++.|++.+.++-
T Consensus 38 ~~l~~~~G~~~~Ti~~IA~~Agvs~~tlY~ 67 (215)
T 2qko_A 38 IEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp HHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999998591407899999987868406988
No 325
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=26.91 E-value=26 Score=15.37 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=24.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 99998588988999999982999999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
+++..-|++-+++++|++++|++.+.++.
T Consensus 25 ~l~~~~G~~~~s~~~Ia~~agvs~~tlY~ 53 (215)
T 3e7q_A 25 ACLKRHGFQGASVRKICAEAGVSVGLINH 53 (215)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997490407799999997939889998
No 326
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=26.74 E-value=33 Score=14.84 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++-+++++|++++|++.+.++-
T Consensus 26 ~~lf~~~G~~~~si~~Ia~~agvs~~tiy~ 55 (213)
T 2qtq_A 26 SNIMREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997393417899999997949999999
No 327
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=26.62 E-value=33 Score=14.83 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..=|++ .++++|++.+|++.+.++.
T Consensus 25 ~~l~~~~G~~-~T~~~IA~~agvs~~tiY~ 53 (194)
T 2q24_A 25 VRVFSEEGLD-AHLERIAREAGVGSGTLYR 53 (194)
T ss_dssp HHHHHHHCTT-CCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHCCCHHHHHH
T ss_conf 9999986966-7699999983988746988
No 328
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=26.61 E-value=20 Score=15.95 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++.+|++.+.++
T Consensus 23 ~~l~~~~G~~~~Tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 23 KDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999769630689999998688861798
No 329
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=25.90 E-value=27 Score=15.27 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|+..+++++|++.+|++.+.++.
T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (195)
T 3pas_A 18 VREVADHGFSATSVGKIAKAAGLSPATLYI 47 (195)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999997393407599999986919141034
No 330
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=25.73 E-value=21 Score=15.92 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++++|++.+|++.+.++
T Consensus 21 ~~lf~~~G~~~~t~~~Ia~~agvs~~~iY 49 (204)
T 3eup_A 21 APVFNVKGLAGTSLTDLTEATNLTKGSIY 49 (204)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999739462889999999790999997
No 331
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82
Probab=25.55 E-value=35 Score=14.72 Aligned_cols=55 Identities=11% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 89999999858898899999998299----9999999999999941798647986898137998
Q gi|254780305|r 34 CERVRIKQSLNNVPIHIDDIIHHTGI----EAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93 (95)
Q Consensus 34 ~~~~~Il~~L~~~p~~iD~l~~~tgl----~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~~~ 93 (95)
+-+++|.+.|..+|.+..+|++..++ +-..|+.. ||---+..+-.| +.|.|.+|.
T Consensus 11 T~RerIi~lL~~~~~s~~eia~~l~l~~~~~~k~v~~h---L~Hiaks~kr~g--~~L~v~Pp~ 69 (105)
T 2gmg_A 11 TRREKIIELLLEGDYSPSELARILDMRGKGSKKVILED---LKVISKIAKREG--MVLLIKPAQ 69 (105)
T ss_dssp HHHHHHHHHTTTSCBCTTHHHHSSCCCSSCCHHHHHHH---HHHHHHHHTTTT--EEEEECCCB
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHHHHHHCCC--CEEEEECHH
T ss_conf 39999999998399999999999576655527899999---999997662289--579987920
No 332
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=25.51 E-value=12 Score=17.20 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=30.9
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999998588--988999999982999999999999999941
Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75 (95)
Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G 75 (95)
++.||..|.. ....-++|+..+|++...|..++..|+=+|
T Consensus 7 ~~~lL~~le~~~~~~ds~ela~~~g~~~~~v~~~~~sL~~~g 48 (508)
T 3l4g_A 7 AELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALG 48 (508)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 999999998568987899999884999999999999997389
No 333
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942}
Probab=25.00 E-value=35 Score=14.66 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCHHHH--HHHHHHCCCCCCHHHHHHH----HC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998999--9999858898899999998----29---999999999999999417986
Q gi|254780305|r 32 TQCERV--RIKQSLNNVPIHIDDIIHH----TG---IEAPVVYLVLLELDLAGRLCH 79 (95)
Q Consensus 32 ~~~~~~--~Il~~L~~~p~~iD~l~~~----tg---l~~~~v~~~LleLEL~G~i~~ 79 (95)
.+.+-. =||..|...+.|==+|.+. ++ ++.+.++.+|-.||=+|.|..
T Consensus 30 ~~~~l~~~~IL~lL~~~~~yGYeI~~~l~~~~~~~~is~gtLYp~L~rLe~~GlI~s 86 (138)
T 2e1n_A 30 LSKELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISG 86 (138)
T ss_dssp CCHHHHHHHHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCEEE
T ss_conf 420779999999980799889999999999839977687623289999998898388
No 334
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=24.79 E-value=36 Score=14.64 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=38.2
Q ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------HCCCCEEEEECCCC
Q ss_conf 8588988999999982999999999999999941798-------64798689813799
Q gi|254780305|r 42 SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC-------HHPEGKVSLTMHLP 92 (95)
Q Consensus 42 ~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~-------~~pGg~v~l~~~~~ 92 (95)
.++.+.-.+..|.+.||+|-.++.-++-.|.=-|+.. |.-.|+|++..--|
T Consensus 28 LId~~~~nvp~L~~~TGmPRRT~QD~I~AL~dlgI~~~FvQ~G~Rnn~G~Y~I~dWG~ 85 (117)
T 3ke2_A 28 LMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRTWGP 85 (117)
T ss_dssp HHHHSCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEECTT
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCC
T ss_conf 9962898689999885896868999998610277599996467206787478753687
No 335
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.77 E-value=36 Score=14.64 Aligned_cols=32 Identities=3% Similarity=-0.189 Sum_probs=25.0
Q ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99985889889999999829999999999999
Q gi|254780305|r 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 39 Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
++-.+-....+..+|++..|++.++|...+-.
T Consensus 116 ~~~~~~~~g~s~~EIA~~lgis~~~V~~~~~R 147 (164)
T 3mzy_A 116 EVLTYLIRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99876562389999999989199999999999
No 336
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=24.57 E-value=24 Score=15.54 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=19.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|+++.|++.+.++
T Consensus 14 ~~lf~~~G~~~~sv~~IA~~aGvs~~tlY 42 (207)
T 2vpr_A 14 LILLNEVGIEGLTTRKLAQKIGVEQPTLY 42 (207)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999849352789999998784876899
No 337
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=24.42 E-value=36 Score=14.60 Aligned_cols=38 Identities=3% Similarity=0.038 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHH----CCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9998999999985----8898899999998299999999999
Q gi|254780305|r 31 YTQCERVRIKQSL----NNVPIHIDDIIHHTGIEAPVVYLVL 68 (95)
Q Consensus 31 ~~~~~~~~Il~~L----~~~p~~iD~l~~~tgl~~~~v~~~L 68 (95)
.++.-++.|+..- +..|.+.++|+...|++...|..+-
T Consensus 5 ~L~~rEr~Ii~~ryGl~~~~~~tl~eia~~lgvS~erVrqie 46 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 499999999999838999997789999999896999999999
No 338
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.20 E-value=37 Score=14.58 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..-|++ +++++|++.+|++.+.++.
T Consensus 23 ~~l~~~~G~~-~t~~~IA~~aGvs~~tlY~ 51 (196)
T 2qwt_A 23 YDTFAAEGLG-VPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp HHHHHHTCTT-SCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHCCCHHHHHH
T ss_conf 9999986978-8899999996949999987
No 339
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.96 E-value=24 Score=15.58 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=22.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 9999858898899999998299999999
Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
+++..=|++-+++++|++++|++.+.++
T Consensus 27 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y 54 (211)
T 3him_A 27 EVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 9999859351779999999790897884
No 340
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=23.82 E-value=37 Score=14.53 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=23.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|+++.|++.+.++
T Consensus 21 ~~l~~~~G~~~~t~~~Ia~~Agvs~g~lY 49 (219)
T 2w53_A 21 EACFHEHGVARTTLEMIGARAGYTRGAVY 49 (219)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 99999859240889999998488955420
No 341
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8}
Probab=23.78 E-value=29 Score=15.13 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH---C-------CCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998588988999999982---9-------9999999999999994179864
Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT---G-------IEAPVVYLVLLELDLAGRLCHH 80 (95)
Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t---g-------l~~~~v~~~LleLEL~G~i~~~ 80 (95)
..+|++++ .++..+.+++++. . +..+++.+.|-.|+-+|+|+|-
T Consensus 255 ~~~i~~~~-~~~~t~~ei~~~l~~~~~~~~~~~~a~~e~~ahL~~L~~~G~i~r~ 308 (317)
T 2zo4_A 255 LEALLALL-DGPKTAWELSLHLFPQELDPAGRRFAFAETLAHLEYLREEGAVGRG 308 (317)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHCC-------CHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 99999998-3899999999998433699899999999999999999988948863
No 342
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=23.51 E-value=14 Score=16.87 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999999982999999999999
Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
+.|-+|++.+|++.++|+.+|=
T Consensus 4 ~Ti~dIA~~aGVS~sTVSraLn 25 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVN 25 (349)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 7699999998869999999967
No 343
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=23.39 E-value=38 Score=14.49 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999998588988999999982999999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95)
.+++..=|+.-+++++|+++.|++.+.++-
T Consensus 24 ~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 53 (203)
T 3f1b_A 24 VDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999997393528799999998909888878
No 344
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.00 E-value=14 Score=16.79 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 889999999829999999999999
Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLE 70 (95)
Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~Lle 70 (95)
-+.|.+|++.+|++.++|+.+|=.
T Consensus 6 k~Ti~diA~~aGVS~aTVSr~Ln~ 29 (333)
T 3jvd_A 6 KSSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 987999999989799999999689
No 345
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=22.84 E-value=39 Score=14.43 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHCCCCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9899999998588988-----9999999829999999999999999417986479868981
Q gi|254780305|r 33 QCERVRIKQSLNNVPI-----HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95)
Q Consensus 33 ~~~~~~Il~~L~~~p~-----~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95)
+..+.+|+.++..... .+-+++...+++.+++...|-.|+-.|.|.+. |++|++.
T Consensus 289 ~~~~~~iL~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~lI~~~-~~~Y~i~ 348 (357)
T 2fna_A 289 RKRYLNIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPS 348 (357)
T ss_dssp HHHHHHHHHHHTTCBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEES
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE-CCEEEEC
T ss_conf 89999999998667983239899999742799999999999999978988998-9999989
No 346
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.80 E-value=27 Score=15.29 Aligned_cols=29 Identities=3% Similarity=0.027 Sum_probs=22.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|+.-+++++|++++|++.+.++
T Consensus 22 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY 50 (199)
T 3on2_A 22 ESTLEKDGVDGLSLRQLAREAGVSHAAPS 50 (199)
T ss_dssp HHHHHHHCGGGCCHHHHHHHTC-----CC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999759161659999999790986786
No 347
>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=22.78 E-value=39 Score=14.42 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHCCCCCC------HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 85889889------9999998299999999999999994179
Q gi|254780305|r 42 SLNNVPIH------IDDIIHHTGIEAPVVYLVLLELDLAGRL 77 (95)
Q Consensus 42 ~L~~~p~~------iD~l~~~tgl~~~~v~~~LleLEL~G~i 77 (95)
.=++++.. ++.|+.+||.++.++.+++-+|-.+|+=
T Consensus 236 ~Ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~g~~ 277 (306)
T 2h2z_A 236 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMN 277 (306)
T ss_dssp HTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCT
T ss_pred HCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 669767222166788877877587899999999999864768
No 348
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=21.74 E-value=41 Score=14.30 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHCC-----CCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Q ss_conf 87999899999998588-----988999999982-9999999999999999
Q gi|254780305|r 29 PEYTQCERVRIKQSLNN-----VPIHIDDIIHHT-GIEAPVVYLVLLELDL 73 (95)
Q Consensus 29 p~~~~~~~~~Il~~L~~-----~p~~iD~l~~~t-gl~~~~v~~~LleLEL 73 (95)
|.|+..++..||..... ..+.+++|+++| |++-+.+..+.-+=-+
T Consensus 1 PlPd~~~R~~Il~~~~~~~~~~~~vdl~~lA~~t~G~sGAdi~~l~~~A~~ 51 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 51 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 986999999999999679999876799999974799999999999999999
No 349
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.37 E-value=42 Score=14.26 Aligned_cols=37 Identities=5% Similarity=0.080 Sum_probs=23.7
Q ss_pred CCHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9989-9999998588988999999982999999999999
Q gi|254780305|r 32 TQCE-RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69 (95)
Q Consensus 32 ~~~~-~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95)
++.+ +.+|+... .+-.+..+|++..|++.++|+..+-
T Consensus 7 lt~~~R~~I~~l~-~~G~s~~~IAk~lg~s~stV~r~lk 44 (141)
T 1u78_A 7 LSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999999-9799999999998957899999999
No 350
>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=21.04 E-value=34 Score=14.73 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=36.2
Q ss_pred HHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99998588--988999999982999999999999999941798647986
Q gi|254780305|r 38 RIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95)
Q Consensus 38 ~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95)
.|++.|+. .-+-.-.|+-+.|+..+.+.-+|-.+|-+|+|+.-.-||
T Consensus 32 hI~~eL~G~EG~lvASkIADrvGITRSVIVNALRKlESAGvIESRSlGM 80 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGM 80 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 9999728876436307554540971899999998765346234125777
No 351
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=20.89 E-value=28 Score=15.18 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=24.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 99999858898899999998299999999
Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95)
Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95)
.+++..-|++-+++.+|++++|++.+.++
T Consensus 45 ~~l~~~~G~~~~t~~~IA~~agvs~~tiY 73 (237)
T 3kkd_A 45 MRLIVRDGVRAVRHRAVAAEAQVPLSATT 73 (237)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTTTC-
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999849240779999999886857798
No 352
>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A*
Probab=20.67 E-value=44 Score=14.17 Aligned_cols=49 Identities=10% Similarity=-0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHCC----CCCCHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998588----988999999982999----99999999999994179864798
Q gi|254780305|r 35 ERVRIKQSLNN----VPIHIDDIIHHTGIE----APVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 35 ~~~~Il~~L~~----~p~~iD~l~~~tgl~----~~~v~~~LleLEL~G~i~~~pGg 83 (95)
-+-.|+++|.. .+++.++|+++++.. ..-+...|-.|--.|++....++
T Consensus 40 veLglfd~L~~~g~~~~ls~~elA~~l~~~~~~~~~lL~rlLr~L~~~gll~~~~~~ 96 (365)
T 1kyz_A 40 LELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRT 96 (365)
T ss_dssp HHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 987928899856999887999999863878886589999999999965838830355
Done!