HHSEARCH alignment of GI: 254780305 and SCOP domain: d1biaa1

Alignment

Probab=94.90  E-value=0.027  Score=30.19  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEE
Q ss_conf             9899999998588-9889999999829999999999999999417-986479868981
Q gi|254780305|r   33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKVSLT   88 (95)
Q Consensus        33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v~l~   88 (95)
                      +.-+.+|+..|.. ..++.++|++..|++..+|...+-.||-.|+ |...+|.-|+|.
T Consensus         4 ~~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~g~GY~L~   61 (63)
T d1biaa1           4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP   61 (63)
T ss_dssp             CHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEC
T ss_conf             4799999999997895879999999893999999999999987993797079838819

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]