HHSEARCH alignment of GI: 254780305 and SCOP domain: d1jhfa1

Alignment

Probab=95.26  E-value=0.013  Score=31.91  Aligned_cols=54  Identities=11%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHC------CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             99989999999858------898899999998299-9999999999999941798647986
Q gi|254780305|r   31 YTQCERVRIKQSLN------NVPIHIDDIIHHTGI-EAPVVYLVLLELDLAGRLCHHPEGK   84 (95)
Q Consensus        31 ~~~~~~~~Il~~L~------~~p~~iD~l~~~tgl-~~~~v~~~LleLEL~G~i~~~pGg~   84 (95)
                      .+++-+++||+.+.      ..|-++.+|++.+|+ +.+.|...|-.||-+|+|.+.+|..
T Consensus         2 ~LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~~~   62 (71)
T d1jhfa1           2 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGAS   62 (71)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCC
T ss_conf             8799999999999999998288988999997729999999999999999975930689998

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]