HHSEARCH alignment of GI: 254780305 and SCOP domain: d1ku9a_

Alignment

Probab=95.61  E-value=0.0068  Score=33.44  Aligned_cols=50  Identities=20%  Similarity=0.170  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             998999999985--88988999999982999999999999999941798647
Q gi|254780305|r   32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        32 ~~~~~~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      .+..+.+|+..|  +.+|+++++|++.+|++.+.++..|-.|+=+|.|.+.+
T Consensus        24 l~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             9999999999998489892899999986777024999999999889979987

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]