HHSEARCH alignment of GI: 254780305 and SCOP domain: d1lnwa_

Alignment

Probab=92.89  E-value=0.058  Score=28.43  Aligned_cols=53  Identities=8%  Similarity=0.064  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r   30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      -..+..+-.||..|+. .++++.+|++..+++.+.|+.++-.||=+|+|.+.+.
T Consensus        32 ~~lt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~~   85 (141)
T d1lnwa_          32 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERN   85 (141)
T ss_dssp             CCCCHHHHHHHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECC
T ss_conf             798999999999999879989999999978457379999999998323011034

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]