HHSEARCH alignment of GI: 254780305 and SCOP domain: d1r1ta_

Alignment

Probab=95.55  E-value=0.0083  Score=32.97  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             998999999985889889999999829999999999999999417986479868
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      .++.+.+|+..|...+..+-+|++.+|++.+.++-.|-.|+-+|+|...--|+.
T Consensus        21 ~~p~Rl~Il~~L~~~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~~   74 (98)
T d1r1ta_          21 ADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRH   74 (98)
T ss_dssp             CCHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCE
T ss_conf             899999999999819967999999989298899999999998892489988798

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]