HHSEARCH alignment of GI: 254780305 and SCOP domain: d2hr3a1

Alignment

Probab=91.73  E-value=0.091  Score=27.35  Aligned_cols=54  Identities=11%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             CCCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             799989999999858--898899999998299999999999999994179864798
Q gi|254780305|r   30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ...+..+-.||..|.  ++++.+.+|+.+.|++.+.++.++-.||=+|+|.+.++.
T Consensus        30 ~glt~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~   85 (145)
T d2hr3a1          30 DPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP   85 (145)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             39899999999999985999799999999798988999999999876986763275

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]