HHSEARCH alignment of GI: 254780305 and SCOP domain: d2p4wa1

Alignment

Probab=95.75  E-value=0.004  Score=34.70  Aligned_cols=48  Identities=23%  Similarity=0.252  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             989999999858898899999998299999999999999994179864
Q gi|254780305|r   33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      ++.+.+|+..|...|.++.+|++.+|++.+.|+-.|-.||=+|.|...
T Consensus        14 ~~~R~~Il~~L~~~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~   61 (194)
T d2p4wa1          14 NETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESR   61 (194)
T ss_dssp             SHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999998089879999999890998999999999988970799

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]