Query         gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 95
No_of_seqs    103 out of 449
Neff          5.6 
Searched_HMMs 13730
Date          Wed Jun  1 02:09:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780305.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1mkma1 a.4.5.33 (A:1-75) Tran  97.0 0.00043 3.1E-08   39.9   5.0   52   38-89      9-62  (75)
  2 d1ulya_ a.4.5.58 (A:) Hypothet  96.2  0.0043 3.1E-07   34.5   5.4   47   33-79     18-64  (190)
  3 d1sfxa_ a.4.5.50 (A:) Hypothet  96.1  0.0038 2.8E-07   34.8   4.9   56   31-86     17-76  (109)
  4 d1tw3a1 a.4.5.29 (A:14-98) Car  95.9  0.0035 2.6E-07   35.0   3.7   55   35-89     22-76  (85)
  5 d1j5ya1 a.4.5.1 (A:3-67) Putat  95.8  0.0059 4.3E-07   33.8   4.7   50   36-85      9-61  (65)
  6 d2p4wa1 a.4.5.64 (A:1-194) Tra  95.7   0.004 2.9E-07   34.7   3.6   48   33-80     14-61  (194)
  7 d1ku9a_ a.4.5.36 (A:) DNA-bind  95.6  0.0068   5E-07   33.4   4.4   50   32-81     24-75  (151)
  8 d1r1ta_ a.4.5.5 (A:) SmtB repr  95.6  0.0083 6.1E-07   33.0   4.7   54   32-85     21-74  (98)
  9 d2d1ha1 a.4.5.50 (A:1-109) Hyp  95.4  0.0059 4.3E-07   33.8   3.4   53   31-83     18-72  (109)
 10 d1jhfa1 a.4.5.2 (A:2-72) LexA   95.3   0.013 9.5E-07   31.9   4.9   54   31-84      2-62  (71)
 11 d1biaa1 a.4.5.1 (A:1-63) Bioti  94.9   0.027   2E-06   30.2   5.7   56   33-88      4-61  (63)
 12 d1r1ua_ a.4.5.5 (A:) Metal-sen  94.7   0.012 8.8E-07   32.1   3.4   57   32-88     16-75  (94)
 13 d1u2wa1 a.4.5.5 (A:12-119) Cad  94.6   0.019 1.4E-06   31.0   4.2   56   33-88     30-89  (108)
 14 d1ub9a_ a.4.5.28 (A:) Hypothet  93.3    0.02 1.4E-06   30.9   2.3   49   33-81     15-64  (100)
 15 d1lnwa_ a.4.5.28 (A:) MexR rep  92.9   0.058 4.2E-06   28.4   4.2   53   30-82     32-85  (141)
 16 d2hoea1 a.4.5.63 (A:10-71) N-a  92.5   0.027 1.9E-06   30.2   2.0   43   38-80      3-45  (62)
 17 d2f2ea1 a.4.5.69 (A:5-146) Hyp  92.4   0.067 4.9E-06   28.1   3.9   45   37-81     23-67  (142)
 18 d1z05a1 a.4.5.63 (A:10-80) Tra  92.2   0.068   5E-06   28.0   3.8   45   35-79      7-52  (71)
 19 d1qzza1 a.4.5.29 (A:10-101) Ac  91.9   0.047 3.4E-06   28.9   2.7   51   35-85     28-78  (92)
 20 d1okra_ a.4.5.39 (A:) Methicil  91.9   0.065 4.7E-06   28.2   3.4   55   31-85      4-63  (120)
 21 d2hr3a1 a.4.5.28 (A:2-146) Pro  91.7   0.091 6.7E-06   27.4   4.0   54   30-83     30-85  (145)
 22 d1jgsa_ a.4.5.28 (A:) Multiple  91.6     0.1 7.5E-06   27.1   4.2   57   27-83     27-84  (138)
 23 d1j75a_ a.4.5.19 (A:) Dlm-1 {M  91.4    0.07 5.1E-06   28.0   3.2   52   36-87      3-56  (57)
 24 d1z6ra1 a.4.5.63 (A:12-81) Mlc  91.2    0.15 1.1E-05   26.3   4.6   46   35-80      6-52  (70)
 25 d1p4xa2 a.4.5.28 (A:126-250) S  91.1    0.13 9.5E-06   26.5   4.3   52   31-82     30-84  (125)
 26 d1s3ja_ a.4.5.28 (A:) Putative  91.1   0.058 4.2E-06   28.4   2.5   54   30-83     31-85  (143)
 27 d3broa1 a.4.5.28 (A:3-137) Tra  90.9    0.15 1.1E-05   26.1   4.5   54   30-83     25-81  (135)
 28 d2hzta1 a.4.5.69 (A:4-98) Puta  90.8    0.11 7.7E-06   27.0   3.6   45   37-81     14-59  (95)
 29 d2fxaa1 a.4.5.28 (A:6-167) Pro  90.7   0.096   7E-06   27.2   3.3   56   28-83     35-91  (162)
 30 d1i1ga1 a.4.5.32 (A:2-61) LprA  90.1    0.14   1E-05   26.4   3.7   46   35-80      4-50  (60)
 31 d2a61a1 a.4.5.28 (A:5-143) Tra  89.9    0.13 9.3E-06   26.6   3.4   52   31-82     27-79  (139)
 32 d2cyya1 a.4.5.32 (A:5-64) Puta  89.7     0.2 1.4E-05   25.6   4.2   48   33-80      2-50  (60)
 33 d3deua1 a.4.5.28 (A:2-141) Tra  89.5    0.19 1.4E-05   25.7   4.0   57   27-83     24-82  (140)
 34 d2cg4a1 a.4.5.32 (A:4-66) Regu  89.4    0.18 1.3E-05   25.8   3.8   47   33-79      4-51  (63)
 35 d2cfxa1 a.4.5.32 (A:1-63) Tran  89.1    0.24 1.8E-05   25.0   4.3   48   32-79      3-51  (63)
 36 d1z7ua1 a.4.5.69 (A:1-108) Hyp  89.0    0.12 8.6E-06   26.8   2.7   45   37-81     22-67  (108)
 37 d1z91a1 a.4.5.28 (A:8-144) Org  89.0    0.14   1E-05   26.3   3.1   55   28-82     27-82  (137)
 38 d2ev0a1 a.4.5.24 (A:2-62) Mang  89.0    0.16 1.1E-05   26.1   3.2   50   38-87     11-61  (61)
 39 d2isya1 a.4.5.24 (A:2-64) Iron  88.9     0.3 2.2E-05   24.5   4.7   50   38-87     13-63  (63)
 40 d2fswa1 a.4.5.69 (A:3-104) Hyp  88.6    0.14   1E-05   26.4   2.8   45   37-81     23-68  (102)
 41 d1hsja1 a.4.5.28 (A:373-487) S  88.5    0.16 1.2E-05   26.0   3.1   56   27-82     25-83  (115)
 42 d2gxba1 a.4.5.19 (A:140-198) Z  88.2    0.32 2.3E-05   24.4   4.4   45   39-83      7-52  (59)
 43 d2fbia1 a.4.5.28 (A:5-140) Pro  87.9    0.16 1.1E-05   26.1   2.7   53   31-83     27-80  (136)
 44 d2etha1 a.4.5.28 (A:1-140) Put  87.6    0.22 1.6E-05   25.3   3.3   53   31-83     29-82  (140)
 45 d3ctaa1 a.4.5.28 (A:5-89) Ta10  87.4    0.14   1E-05   26.4   2.2   42   46-87     20-61  (85)
 46 d1yyva1 a.4.5.69 (A:9-122) Put  87.1    0.17 1.3E-05   25.9   2.5   45   37-81     27-72  (114)
 47 d1sfua_ a.4.5.19 (A:) 34L {Yab  87.0    0.24 1.7E-05   25.1   3.2   47   37-83     13-60  (70)
 48 d1dpua_ a.4.5.16 (A:) C-termin  86.6    0.29 2.1E-05   24.7   3.4   47   32-78      4-55  (69)
 49 d3bwga1 a.4.5.6 (A:5-82) Trans  86.4    0.41   3E-05   23.8   4.1   46   46-91     20-66  (78)
 50 d1p4xa1 a.4.5.28 (A:1-125) Sta  86.2    0.15 1.1E-05   26.3   1.8   53   30-82     30-85  (125)
 51 d2fbha1 a.4.5.28 (A:8-144) Tra  85.6    0.36 2.6E-05   24.1   3.5   53   30-82     24-78  (137)
 52 d1xmka1 a.4.5.19 (A:294-366) Z  84.7    0.17 1.2E-05   25.9   1.5   49   35-83      6-56  (73)
 53 d1lj9a_ a.4.5.28 (A:) Transcri  84.3    0.25 1.8E-05   25.0   2.2   53   30-82     25-78  (144)
 54 d1mzba_ a.4.5.42 (A:) Ferric u  84.2    0.97 7.1E-05   21.8   5.2   50   32-81     14-71  (134)
 55 d2hs5a1 a.4.5.6 (A:25-93) Puta  83.3    0.49 3.6E-05   23.4   3.4   43   46-88     24-66  (69)
 56 d2frha1 a.4.5.28 (A:102-216) P  82.7    0.45 3.3E-05   23.6   3.0   53   31-83     30-85  (115)
 57 d2dk5a1 a.4.5.85 (A:8-85) DNA-  82.0    0.79 5.8E-05   22.3   4.1   56   26-81      5-63  (78)
 58 d2g9wa1 a.4.5.39 (A:3-124) Hyp  81.8    0.85 6.2E-05   22.1   4.1   53   32-84      5-63  (122)
 59 d1hw1a1 a.4.5.6 (A:5-78) Fatty  81.4    0.53 3.9E-05   23.2   3.0   44   46-89     25-69  (74)
 60 d1p6ra_ a.4.5.39 (A:) Penicill  80.9    0.78 5.7E-05   22.3   3.7   57   30-86      5-66  (82)
 61 d1zyba1 a.4.5.4 (A:148-220) Pr  80.6    0.78 5.7E-05   22.3   3.6   42   47-89     27-68  (73)
 62 d1stza1 a.4.5.51 (A:14-100) He  79.6     1.2 8.6E-05   21.4   4.3   46   34-79      4-57  (87)
 63 d2bv6a1 a.4.5.28 (A:5-140) Tra  78.2    0.44 3.2E-05   23.7   1.7   53   30-82     30-83  (136)
 64 d1ft9a1 a.4.5.4 (A:134-213) CO  77.7       1 7.6E-05   21.6   3.5   43   46-88     29-71  (80)
 65 d1sd4a_ a.4.5.39 (A:) Penicill  77.7    0.77 5.6E-05   22.4   2.8   54   32-85      4-62  (122)
 66 d1fp2a1 a.4.5.29 (A:8-108) Iso  77.2    0.53 3.9E-05   23.2   1.9   53   36-88     31-90  (101)
 67 d2htja1 a.4.5.73 (A:1-73) P fi  77.0       1 7.2E-05   21.8   3.3   46   37-82      3-49  (73)
 68 d2csba5 a.267.1.1 (A:3-293) To  77.0     1.4  0.0001   20.9   4.0   37   29-65    176-213 (291)
 69 d2fbka1 a.4.5.28 (A:8-179) Tra  76.2    0.63 4.6E-05   22.8   2.0   59   25-83     53-115 (172)
 70 d1ylfa1 a.4.5.55 (A:5-142) Hyp  76.1    0.95 6.9E-05   21.9   2.9   52   38-90     11-67  (138)
 71 d1i5za1 a.4.5.4 (A:138-206) Ca  76.1     1.3 9.5E-05   21.1   3.7   40   47-87     29-68  (69)
 72 d1s6la1 a.4.5.79 (A:21-80) Alk  74.4     1.7 0.00013   20.4   3.9   33   38-70      6-39  (60)
 73 d1xd7a_ a.4.5.55 (A:) Hypothet  74.2     1.6 0.00012   20.6   3.7   50   39-89      9-61  (127)
 74 d2gaua1 a.4.5.4 (A:152-232) Tr  73.3     1.2 9.1E-05   21.2   3.0   42   46-88     28-69  (81)
 75 d2obpa1 a.4.5.71 (A:12-92) Put  73.3     1.6 0.00012   20.6   3.5   42   37-78     11-55  (81)
 76 d2zcwa1 a.4.5.4 (A:118-199) Tr  71.7     1.2   9E-05   21.2   2.7   42   46-88     28-69  (82)
 77 d3bz6a1 a.4.5.75 (A:13-96) Hyp  71.2       2 0.00014   20.1   3.6   57   31-87      6-80  (84)
 78 d3e5ua1 a.4.5.4 (A:148-227) Ch  70.0     1.6 0.00012   20.7   2.9   41   46-87     29-69  (80)
 79 d1y0ua_ a.4.5.5 (A:) Putative   65.0     4.2  0.0003   18.4   4.6   55   32-88     29-83  (89)
 80 d2hsga1 a.35.1.5 (A:2-58) Gluc  63.8       3 0.00021   19.2   3.3   22   48-69      2-23  (57)
 81 d1lvaa3 a.4.5.35 (A:511-574) C  63.0     4.5 0.00033   18.2   4.7   50   37-86     10-62  (64)
 82 d1or7a1 a.4.13.2 (A:120-187) S  62.7     4.6 0.00034   18.2   5.0   39   32-70     19-57  (68)
 83 d2v9va2 a.4.5.35 (A:438-510) C  62.1     4.1  0.0003   18.5   3.7   47   46-93     25-73  (73)
 84 d1efaa1 a.35.1.5 (A:2-60) Lac   61.8     3.1 0.00022   19.1   3.1   23   47-69      2-24  (59)
 85 d1rkta1 a.4.1.9 (A:2-82) Hypot  61.8     4.8 0.00035   18.1   4.4   30   37-66     21-50  (81)
 86 d2bgca1 a.4.5.4 (A:138-237) Li  60.8     3.2 0.00024   19.0   3.0   41   47-88     31-72  (100)
 87 d2d6ya1 a.4.1.9 (A:7-74) Putat  60.6       5 0.00037   18.0   4.3   31   37-67     12-42  (68)
 88 d2giva1 d.108.1.1 (A:4-274) Pr  60.0     4.1  0.0003   18.4   3.4   47   36-85    190-238 (271)
 89 d2fbqa1 a.4.1.9 (A:2-80) Trans  58.5     5.5  0.0004   17.7   4.4   30   37-66     14-43  (79)
 90 d2i10a1 a.4.1.9 (A:10-78) Puta  57.6     5.7 0.00041   17.7   4.2   31   37-67     10-40  (69)
 91 d1rp3a2 a.4.13.2 (A:164-234) S  57.4     5.7 0.00042   17.6   5.0   40   31-70     21-60  (71)
 92 d1uxda_ a.35.1.5 (A:) Fructose  56.8     2.9 0.00021   19.2   2.2   22   48-69      1-22  (59)
 93 d1v4ra1 a.4.5.6 (A:1-100) Tran  53.5    0.94 6.9E-05   21.9  -0.7   45   46-90     31-76  (100)
 94 d1pb6a1 a.4.1.9 (A:14-85) Hypo  52.6     6.9 0.00051   17.2   4.2   31   37-67     14-44  (72)
 95 d1qpza1 a.35.1.5 (A:2-58) Puri  51.9     5.9 0.00043   17.6   3.1   21   49-69      2-22  (57)
 96 d1s7oa_ a.4.13.3 (A:) Hypothet  51.6     7.2 0.00052   17.1   4.5   39   32-70     17-55  (106)
 97 d2g7sa1 a.4.1.9 (A:3-76) Putat  51.2     7.3 0.00053   17.1   3.6   30   37-66     14-43  (74)
 98 d1ui5a1 a.4.1.9 (A:5-75) A-fac  49.8     7.7 0.00056   16.9   4.2   30   37-66     15-44  (71)
 99 d1xn7a_ a.4.5.62 (A:) Hypothet  49.4     7.8 0.00057   16.9   3.5   42   39-80      7-49  (78)
100 d2o7ta1 a.4.1.9 (A:1-78) Trans  49.3     7.8 0.00057   16.9   3.5   30   37-66     17-46  (78)
101 d2gena1 a.4.1.9 (A:6-75) Proba  47.3     8.5 0.00062   16.7   4.3   30   37-66     10-39  (70)
102 d2fx0a1 a.4.1.9 (A:4-76) Hemol  47.0     8.6 0.00062   16.7   4.2   31   37-67     14-44  (73)
103 d1jt6a1 a.4.1.9 (A:2-72) Multi  46.5     8.7 0.00064   16.7   4.2   30   37-66     11-40  (71)
104 d1xmaa_ a.4.5.61 (A:) Predicte  46.4     5.6  0.0004   17.7   2.3   44   36-79      9-60  (103)
105 d1vz0a1 a.4.14.1 (A:116-208) P  46.2     8.8 0.00064   16.6   3.4   44   35-78      7-50  (93)
106 d1z67a1 a.259.1.1 (A:3-131) Hy  46.1     8.9 0.00065   16.6   4.6   51   31-85     58-108 (129)
107 d1q1ha_ a.4.5.41 (A:) Transcri  45.9     8.9 0.00065   16.6   3.8   42   37-78     21-64  (88)
108 d1v7ba1 a.4.1.9 (A:1-74) Trans  45.7       9 0.00065   16.6   4.0   30   37-66     14-43  (74)
109 d1l0oc_ a.4.13.2 (C:) SigmaF {  45.6       9 0.00066   16.6   4.9   34   36-70     21-54  (57)
110 d2ozua1 d.108.1.1 (A:507-776)   45.4       7 0.00051   17.2   2.7   47   36-85    190-239 (270)
111 d2np5a1 a.4.1.9 (A:9-77) Trans  44.9     9.3 0.00067   16.5   3.6   30   37-66     11-40  (69)
112 d2fq4a1 a.4.1.9 (A:9-77) Trans  44.4     9.4 0.00069   16.5   4.2   31   37-67     14-44  (69)
113 d1t56a1 a.4.1.9 (A:22-94) Ethr  43.4     9.8 0.00072   16.4   3.5   30   37-66     13-42  (73)
114 d2g7la1 a.4.1.9 (A:16-83) Puta  42.9      10 0.00073   16.3   3.7   30   37-66     14-43  (68)
115 d1nera_ a.35.1.2 (A:) Ner {Bac  42.9      10 0.00073   16.3   3.4   41   31-71      6-46  (74)
116 d2hyja1 a.4.1.9 (A:8-82) Putat  42.7      10 0.00073   16.3   3.6   30   37-66     15-44  (75)
117 d1t6sa1 a.4.5.60 (A:1-85) Segr  42.4      10 0.00074   16.3   4.1   48   43-90     18-73  (85)
118 d3c07a1 a.4.1.9 (A:15-89) Puta  42.2      10 0.00075   16.3   4.3   30   37-66     15-44  (75)
119 d2oi8a1 a.4.1.9 (A:8-86) Putat  41.4      11 0.00077   16.2   4.3   30   37-66     19-48  (79)
120 d1fy7a_ d.108.1.1 (A:) Histone  41.3     6.4 0.00047   17.4   2.0   47   36-85    193-241 (273)
121 d2gfna1 a.4.1.9 (A:4-80) Proba  41.1      11 0.00078   16.2   3.5   30   37-66     16-45  (77)
122 d2id3a1 a.4.1.9 (A:13-80) Puta  41.0      11 0.00078   16.2   3.6   31   37-67     16-46  (68)
123 d1zk8a1 a.4.1.9 (A:6-77) Trans  40.4      11 0.00077   16.2   3.0   29   37-65     13-41  (72)
124 d1sgma1 a.4.1.9 (A:5-77) Putat  40.1     9.8 0.00072   16.4   2.8   31   37-67     12-42  (73)
125 d1vi0a1 a.4.1.9 (A:6-77) Hypot  38.7      12 0.00085   16.0   3.5   30   37-66     11-40  (72)
126 d1xsva_ a.4.13.3 (A:) Hypothet  36.8      13 0.00091   15.8   5.1   39   32-70     19-57  (106)
127 d1wi9a_ a.4.5.47 (A:) Hypothet  36.1      13 0.00094   15.7   3.1   54   39-92     12-69  (72)
128 d2fd5a1 a.4.1.9 (A:1-76) Proba  34.8      10 0.00074   16.3   2.2   29   37-65     17-45  (76)
129 d1ufma_ a.4.5.47 (A:) COP9 sig  33.9      12 0.00091   15.8   2.5   35   45-79     28-62  (84)
130 d2iu5a1 a.4.1.9 (A:1-71) Trans  32.9     7.9 0.00058   16.9   1.4   29   37-65     16-44  (71)
131 d2vkva1 a.4.1.9 (A:6-67) Tetra  32.4     9.6  0.0007   16.4   1.7   30   37-66      9-38  (62)
132 d1r7ja_ a.4.5.49 (A:) Sso10a (  32.0      15  0.0011   15.4   4.8   50   37-88      9-58  (90)
133 d1bl0a1 a.4.1.8 (A:9-62) MarA   31.2      15  0.0011   15.4   2.5   33   37-69      6-41  (54)
134 d1hlva1 a.4.1.7 (A:1-66) DNA-b  30.8      16  0.0012   15.2   4.3   38   33-70     10-48  (66)
135 d1z0xa1 a.4.1.9 (A:4-71) Trans  30.1      16  0.0012   15.2   2.6   29   38-66     13-42  (68)
136 d2hkua1 a.4.1.9 (A:18-87) Puta  29.2      17  0.0012   15.1   4.3   29   37-66     11-39  (70)
137 d1ldja3 e.40.1.1 (A:411-686) C  28.6      17  0.0013   15.0   4.1   48   32-79    193-241 (276)
138 d1d5ya1 a.4.1.8 (A:3-56) Rob t  27.9      13 0.00098   15.7   1.8   31   38-68      7-40  (54)
139 d2g3ba1 a.4.1.9 (A:2-73) Putat  27.9      13 0.00093   15.8   1.7   31   37-67     12-42  (72)
140 d1ttya_ a.4.13.2 (A:) Sigma70   27.4      18  0.0013   14.9   5.5   38   31-68     18-59  (87)
141 d2o3fa1 a.4.1.20 (A:1-83) Puta  26.6      19  0.0014   14.9   2.4   46   31-76     15-65  (83)
142 d2id6a1 a.4.1.9 (A:1-75) Trans  25.5      13 0.00096   15.7   1.4   30   37-66     13-42  (75)
143 d1yg2a_ a.4.5.61 (A:) Hypothet  25.4      20  0.0015   14.7   3.8   44   36-79      3-54  (178)
144 d1r71a_ a.4.14.1 (A:) Transcri  24.9      21  0.0015   14.6   4.1   44   34-77     17-60  (114)
145 d2duca1 b.47.1.4 (A:2-301) Cor  22.2      23  0.0017   14.4   3.9   36   42-77    235-276 (300)
146 d2np3a1 a.4.1.9 (A:35-99) Puta  21.0     9.3 0.00068   16.5  -0.1   30   37-66      6-35  (65)
147 d1ijwc_ a.4.1.2 (C:) HIN recom  20.8      25  0.0018   14.2   4.1   39   29-68      3-42  (47)

No 1  
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.03  E-value=0.00043  Score=39.92  Aligned_cols=52  Identities=10%  Similarity=0.157  Sum_probs=47.8

Q ss_pred             HHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             99998588--98899999998299999999999999994179864798689813
Q gi|254780305|r   38 RIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM   89 (95)
Q Consensus        38 ~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~   89 (95)
                      +|++.+..  .|+.+.+|++.+|++.+.++..|-.|+-.|++.+-+.|+|++..
T Consensus         9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~   62 (75)
T d1mkma1           9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGY   62 (75)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECT
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECH
T ss_conf             999999857999899999999791999999999999988998889999786329


No 2  
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.19  E-value=0.0043  Score=34.52  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98999999985889889999999829999999999999999417986
Q gi|254780305|r   33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~   79 (95)
                      ++-+.+||..|...|.++.+|+..+|++.+.++..|-.|+=+|.|..
T Consensus        18 ~p~R~~Il~~L~~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~   64 (190)
T d1ulya_          18 EDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEV   64 (190)
T ss_dssp             SHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             99999999999819987999999989199999999999998898389


No 3  
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.13  E-value=0.0038  Score=34.81  Aligned_cols=56  Identities=18%  Similarity=-0.004  Sum_probs=47.5

Q ss_pred             CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC---CCEEE
Q ss_conf             999899999998588-988999999982999999999999999941798647---98689
Q gi|254780305|r   31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP---EGKVS   86 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p---Gg~v~   86 (95)
                      ..+..+.+||.+|-. .+.++.+|++.+|++.+.|+.+|-.||=+|+|.+..   |++..
T Consensus        17 Glt~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~   76 (109)
T d1sfxa_          17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGY   76 (109)
T ss_dssp             CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             999999999999882389989999998579835599999999959987988505788502


No 4  
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=95.86  E-value=0.0035  Score=35.00  Aligned_cols=55  Identities=13%  Similarity=0.135  Sum_probs=50.3

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             9999999858898899999998299999999999999994179864798689813
Q gi|254780305|r   35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM   89 (95)
Q Consensus        35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~   89 (95)
                      .+-.|++.|...|.++++|+.++|.+...+...|--|.-.|++....+|.|+++-
T Consensus        22 v~L~ifd~l~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~   76 (85)
T d1tw3a1          22 ATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTE   76 (85)
T ss_dssp             HHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECT
T ss_pred             HHCCCHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEECCH
T ss_conf             9969287765499999999988492926999999999877975746999385699


No 5  
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=95.82  E-value=0.0059  Score=33.79  Aligned_cols=50  Identities=18%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             HHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEE
Q ss_conf             999999858--89889999999829999999999999999417-986479868
Q gi|254780305|r   36 RVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKV   85 (95)
Q Consensus        36 ~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v   85 (95)
                      +.+|+..|.  ..++++++|++..+++..+|..-+-+|+-.|. |.+.+|||+
T Consensus         9 ~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~gGY~   61 (65)
T d1j5ya1           9 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYV   61 (65)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEE
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf             99999999985997859999999798999999999999987992799679888


No 6  
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=95.75  E-value=0.004  Score=34.70  Aligned_cols=48  Identities=23%  Similarity=0.252  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             989999999858898899999998299999999999999994179864
Q gi|254780305|r   33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      ++.+.+|+..|...|.++.+|++.+|++.+.|+-.|-.||=+|.|...
T Consensus        14 ~~~R~~Il~~L~~~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~   61 (194)
T d2p4wa1          14 NETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESR   61 (194)
T ss_dssp             SHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             999999999998089879999999890998999999999988970799


No 7  
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=95.61  E-value=0.0068  Score=33.44  Aligned_cols=50  Identities=20%  Similarity=0.170  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             998999999985--88988999999982999999999999999941798647
Q gi|254780305|r   32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        32 ~~~~~~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      .+..+.+|+..|  +.+|+++++|++.+|++.+.++..|-.|+=+|.|.+.+
T Consensus        24 l~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             9999999999998489892899999986777024999999999889979987


No 8  
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=95.55  E-value=0.0083  Score=32.97  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             998999999985889889999999829999999999999999417986479868
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      .++.+.+|+..|...+..+-+|++.+|++.+.++-.|-.|+-+|+|...--|+.
T Consensus        21 ~~p~Rl~Il~~L~~~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~~   74 (98)
T d1r1ta_          21 ADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRH   74 (98)
T ss_dssp             CCHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCE
T ss_conf             899999999999819967999999989298899999999998892489988798


No 9  
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=95.37  E-value=0.0059  Score=33.80  Aligned_cols=53  Identities=13%  Similarity=0.073  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99989999999858--898899999998299999999999999994179864798
Q gi|254780305|r   31 YTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        31 ~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ..+..+..||..|.  .+|+.+++|++++|++.+.|+..|-.||=+|+|.+.+..
T Consensus        18 gLs~~~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~   72 (109)
T d2d1ha1          18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE   72 (109)
T ss_dssp             TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred             CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             9599999999999976989889999999885676999999999978997985268


No 10 
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=95.26  E-value=0.013  Score=31.91  Aligned_cols=54  Identities=11%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHC------CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             99989999999858------898899999998299-9999999999999941798647986
Q gi|254780305|r   31 YTQCERVRIKQSLN------NVPIHIDDIIHHTGI-EAPVVYLVLLELDLAGRLCHHPEGK   84 (95)
Q Consensus        31 ~~~~~~~~Il~~L~------~~p~~iD~l~~~tgl-~~~~v~~~LleLEL~G~i~~~pGg~   84 (95)
                      .+++-+++||+.+.      ..|-++.+|++.+|+ +.+.|...|-.||-+|+|.+.+|..
T Consensus         2 ~LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~~~   62 (71)
T d1jhfa1           2 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGAS   62 (71)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCC
T ss_conf             8799999999999999998288988999997729999999999999999975930689998


No 11 
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=94.90  E-value=0.027  Score=30.19  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEE
Q ss_conf             9899999998588-9889999999829999999999999999417-986479868981
Q gi|254780305|r   33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKVSLT   88 (95)
Q Consensus        33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v~l~   88 (95)
                      +.-+.+|+..|.. ..++.++|++..|++..+|...+-.||-.|+ |...+|.-|+|.
T Consensus         4 ~~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~g~GY~L~   61 (63)
T d1biaa1           4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP   61 (63)
T ss_dssp             CHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEC
T ss_conf             4799999999997895879999999893999999999999987993797079838819


No 12 
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=94.68  E-value=0.012  Score=32.08  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf             99899999998588988999999982999999999999999941798647986---8981
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT   88 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~   88 (95)
                      .++.+-+|+..|...+..+-+|+...|++.+.++-.|-.|+-+|.|...--|+   |++.
T Consensus        16 ~d~~Rl~Il~~L~~~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~   75 (94)
T d1r1ua_          16 GDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLD   75 (94)
T ss_dssp             CSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf             899999999999729956999999988787789999999998895379988789999989


No 13 
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=94.58  E-value=0.019  Score=31.01  Aligned_cols=56  Identities=25%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE
Q ss_conf             989999999858-8988999999982999999999999999941798647986---8981
Q gi|254780305|r   33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT   88 (95)
Q Consensus        33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~   88 (95)
                      ++.+.+|+..|. ..+..+.+|++.+|++.+.++-.|-.|+-+|+|.+.--|+   |++.
T Consensus        30 dp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~   89 (108)
T d1u2wa1          30 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLG   89 (108)
T ss_dssp             SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEEC
T ss_conf             999999999998689914999998885572579999999998894589988888999988


No 14 
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=93.33  E-value=0.02  Score=30.95  Aligned_cols=49  Identities=12%  Similarity=-0.031  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             989999999858-8988999999982999999999999999941798647
Q gi|254780305|r   33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      ++.+.+|+..|. .++.++.+|++..+++.+.++..|-.||=+|+|.+..
T Consensus        15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~   64 (100)
T d1ub9a_          15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK   64 (100)
T ss_dssp             SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEE
T ss_conf             99999999876047990199999998625432309999882310368887


No 15 
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=92.89  E-value=0.058  Score=28.43  Aligned_cols=53  Identities=8%  Similarity=0.064  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r   30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      -..+..+-.||..|+. .++++.+|++..+++.+.|+.++-.||=+|+|.+.+.
T Consensus        32 ~~lt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~~   85 (141)
T d1lnwa_          32 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERN   85 (141)
T ss_dssp             CCCCHHHHHHHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECC
T ss_conf             798999999999999879989999999978457379999999998323011034


No 16 
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=92.49  E-value=0.027  Score=30.24  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=38.7

Q ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999858898899999998299999999999999994179864
Q gi|254780305|r   38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      +|+..+-..|++..+|++.+|++.++|..++-+|+=.|+|...
T Consensus         3 ~Il~~i~~~pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~   45 (62)
T d2hoea1           3 RILKRIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE   45 (62)
T ss_dssp             CSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf             9999999789699999999893999999999999988987877


No 17 
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=92.38  E-value=0.067  Score=28.09  Aligned_cols=45  Identities=13%  Similarity=0.126  Sum_probs=40.6

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999998588988999999982999999999999999941798647
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      -.|+..|...+..+++|.+..|++...++.-|-+||-.|.|.+..
T Consensus        23 l~Il~~l~~G~~rf~el~~~lgis~~vLs~rL~~L~~~gLv~r~~   67 (142)
T d2f2ea1          23 MLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP   67 (142)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEC
T ss_conf             999999974997799999774003889999999999710435545


No 18 
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=92.22  E-value=0.068  Score=28.03  Aligned_cols=45  Identities=16%  Similarity=0.141  Sum_probs=40.1

Q ss_pred             HHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998588-9889999999829999999999999999417986
Q gi|254780305|r   35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~   79 (95)
                      .+.+||+.|-. .+++..+|++.+|++.++|..++-+|+=.|+|..
T Consensus         7 N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e   52 (71)
T d1z05a1           7 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE   52 (71)
T ss_dssp             HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             9999999999859948999999988788789999999998898797


No 19 
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=91.93  E-value=0.047  Score=28.91  Aligned_cols=51  Identities=12%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999999985889889999999829999999999999999417986479868
Q gi|254780305|r   35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      -+-.|++.|...|.++++|+.++|++...+...|--|.-.|.+++...|.+
T Consensus        28 veL~ifd~L~~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~   78 (92)
T d1qzza1          28 ATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGR   78 (92)
T ss_dssp             HHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CC
T ss_pred             HHCCCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             996834888089999999998878391699999999987798364069873


No 20 
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=91.88  E-value=0.065  Score=28.16  Aligned_cols=55  Identities=9%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999899999998588-988999999982----9999999999999999417986479868
Q gi|254780305|r   31 YTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      ..+..|-.|+.+|-. +|+.+.+|+...    +|..++|..+|-.||=+|+|.|...|+-
T Consensus         4 ~lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~   63 (120)
T d1okra_           4 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKI   63 (120)
T ss_dssp             CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             979999999999985899789999999752128648769999999997898588734882


No 21 
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=91.73  E-value=0.091  Score=27.35  Aligned_cols=54  Identities=11%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             CCCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             799989999999858--898899999998299999999999999994179864798
Q gi|254780305|r   30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ...+..+-.||..|.  ++++.+.+|+.+.|++.+.++.++-.||=+|+|.+.++.
T Consensus        30 ~glt~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~   85 (145)
T d2hr3a1          30 DPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP   85 (145)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             39899999999999985999799999999798988999999999876986763275


No 22 
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=91.57  E-value=0.1  Score=27.06  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r   27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ..+-..+..+-.++..|+. .++...+|+..++++.+.++.++-.||=+|+|.+.+..
T Consensus        27 l~~~~Lt~~q~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~   84 (138)
T d1jgsa_          27 LSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP   84 (138)
T ss_dssp             HTTTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred             HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             8786989999999886871809899999999787885799999987307877986316


No 23 
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=91.41  E-value=0.07  Score=27.98  Aligned_cols=52  Identities=19%  Similarity=0.315  Sum_probs=44.7

Q ss_pred             HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999998588--988999999982999999999999999941798647986898
Q gi|254780305|r   36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      |++||+.|++  .|+.+.+|+..|+.|-..+...|..|--.++|....-+..+|
T Consensus         3 EQkILQVL~dagspvk~~ql~k~cqVpkk~lNqVL~rlkke~kVsl~~patW~l   56 (57)
T d1j75a_           3 EQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSI   56 (57)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             899999999459834799999997887889999999997555514688750137


No 24 
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.18  E-value=0.15  Score=26.26  Aligned_cols=46  Identities=9%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             HHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999998588-98899999998299999999999999994179864
Q gi|254780305|r   35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      .+..|++.|-. .+++-.+|++.+|++.++|..++-+|+=.|+|...
T Consensus         6 N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~   52 (70)
T d1z6ra1           6 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL   52 (70)
T ss_dssp             HHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999999499289999999894999999999999988997860


No 25 
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=91.14  E-value=0.13  Score=26.51  Aligned_cols=52  Identities=15%  Similarity=0.129  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999998588---9889999999829999999999999999417986479
Q gi|254780305|r   31 YTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      ..+..+-.||..|..   .++.+.+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus        30 ~Ls~~q~~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~   84 (125)
T d1p4xa2          30 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERS   84 (125)
T ss_dssp             SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEEC
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf             9999999999999980378836999999978984249999999980057765421


No 26 
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=91.14  E-value=0.058  Score=28.43  Aligned_cols=54  Identities=11%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r   30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ...+..+-.||..|.. +++++.+|+..++++.+.++.++-.||=+|+|.+.+..
T Consensus        31 ~glt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~   85 (143)
T d1s3ja_          31 QGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT   85 (143)
T ss_dssp             TTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEC
T ss_conf             6979999999999997799899999999896988999999999973400131013


No 27 
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=90.92  E-value=0.15  Score=26.13  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7999899999998588---98899999998299999999999999994179864798
Q gi|254780305|r   30 EYTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      -..+..+-.||..|..   .+++..+|++.++++.+.++.++-.||=+|+|.+....
T Consensus        25 ~glt~~q~~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~~   81 (135)
T d3broa1          25 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG   81 (135)
T ss_dssp             TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             699999999999999707999999999999896886899999999888888888610


No 28 
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=90.78  E-value=0.11  Score=26.99  Aligned_cols=45  Identities=16%  Similarity=0.104  Sum_probs=40.7

Q ss_pred             HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999998588988999999982-999999999999999941798647
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      -.|+..|...+..+++|.+.. |++...++.-|-+||-.|.|.|..
T Consensus        14 l~Il~~L~~g~~rF~el~~~l~gis~~~Ls~rLk~Le~~glv~r~~   59 (95)
T d2hzta1          14 CVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV   59 (95)
T ss_dssp             HHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEE
T ss_conf             9999999749997999997732677658999999999968773000


No 29 
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=90.74  E-value=0.096  Score=27.24  Aligned_cols=56  Identities=13%  Similarity=0.021  Sum_probs=49.0

Q ss_pred             CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             887999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r   28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      .+-..+..+-.||..|+. +++++.+|++.++++.+.++.++-.||=+|+|.+.+.-
T Consensus        35 k~~~Lt~~q~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~   91 (162)
T d2fxaa1          35 KPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL   91 (162)
T ss_dssp             GGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf             425999899999965211899189999999769940319989999977772342056


No 30 
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=90.14  E-value=0.14  Score=26.37  Aligned_cols=46  Identities=17%  Similarity=0.125  Sum_probs=40.1

Q ss_pred             HHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999985889-8899999998299999999999999994179864
Q gi|254780305|r   35 ERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        35 ~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      -..+|+..|..+ .++..+|++++|++.+.|..-+=.|+=.|.|.+.
T Consensus         4 ~D~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           4 RDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999988499999999999892999999999999988975768


No 31 
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=89.91  E-value=0.13  Score=26.57  Aligned_cols=52  Identities=17%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r   31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      ..+..+-.||..|.. .++.+.+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus        27 glt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~   79 (139)
T d2a61a1          27 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPD   79 (139)
T ss_dssp             TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEC
T ss_conf             97999999999999769989999999839881442699999984572566321


No 32 
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=89.65  E-value=0.2  Score=25.55  Aligned_cols=48  Identities=17%  Similarity=0.167  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98999999985889-8899999998299999999999999994179864
Q gi|254780305|r   33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        33 ~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      |.-..+|+..|..+ .+++.+|++++|++.+.|..-+-.|+=.|.|.+.
T Consensus         2 D~~D~~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           2 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             CHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             8899999999998289999999999893999999999999988974757


No 33 
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=89.46  E-value=0.19  Score=25.65  Aligned_cols=57  Identities=14%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             CCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6887999899999998588--98899999998299999999999999994179864798
Q gi|254780305|r   27 HYPEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        27 ~~p~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ..+-..+..+-.+|..|..  .++...+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus        24 l~~~glt~~~~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~~~   82 (140)
T d3deua1          24 LKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA   82 (140)
T ss_dssp             TTTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---
T ss_pred             HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf             87769799999999999874999569999999787776788999999708977751667


No 34 
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=89.41  E-value=0.18  Score=25.76  Aligned_cols=47  Identities=11%  Similarity=0.133  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98999999985889-889999999829999999999999999417986
Q gi|254780305|r   33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        33 ~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~   79 (95)
                      |.-..+|+..|..+ -.++.+|++++|++.++|..-+-.||=+|.|.+
T Consensus         4 D~~D~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~   51 (63)
T d2cg4a1           4 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG   51 (63)
T ss_dssp             CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             889999999999838999999999989399999999999998898576


No 35 
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=89.12  E-value=0.24  Score=25.04  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99899999998588-9889999999829999999999999999417986
Q gi|254780305|r   32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~   79 (95)
                      .|.-..+|+..|.. ..++..+|++.+|++.++|..-+-.||=.|.|.+
T Consensus         3 lD~~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~   51 (63)
T d2cfxa1           3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ   51 (63)
T ss_dssp             CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             7899999999999839999999999989687899999999998898565


No 36 
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=89.04  E-value=0.12  Score=26.76  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=39.9

Q ss_pred             HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999998588988999999982-999999999999999941798647
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      -.|+..|..++..+++|.+.. |++...++..|-+||-.|.|.|..
T Consensus        22 ~~Il~~L~~g~~RF~el~~~l~gIS~~~Ls~rLk~L~~~glv~R~~   67 (108)
T d1z7ua1          22 LSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES   67 (108)
T ss_dssp             HHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf             9999999759988999997773777668999999999789503431


No 37 
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=89.01  E-value=0.14  Score=26.29  Aligned_cols=55  Identities=5%  Similarity=0.004  Sum_probs=48.8

Q ss_pred             CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             887999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r   28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      .+-..+..+-.||..++. +++..-+|++..+++.+.++.++-.||=+|+|.+.++
T Consensus        27 ~~~gLt~~q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~~~   82 (137)
T d1z91a1          27 DKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRS   82 (137)
T ss_dssp             TTTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred             HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             78496999999999987589998999999979688889799999965005477216


No 38 
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=88.96  E-value=0.16  Score=26.11  Aligned_cols=50  Identities=16%  Similarity=0.124  Sum_probs=42.6

Q ss_pred             HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999858-8988999999982999999999999999941798647986898
Q gi|254780305|r   38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      .|+.... ..++..-+|++..|++.+.|+.++-.|+-+|+|...|-|.+.|
T Consensus        11 ~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~Y~~i~L   61 (61)
T d2ev0a1          11 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVL   61 (61)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----CCEE
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEC
T ss_conf             999998358975099999995899515999999998889977706777569


No 39 
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=88.86  E-value=0.3  Score=24.54  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999858-8988999999982999999999999999941798647986898
Q gi|254780305|r   38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      .|+.... ..++.+-+|+++.|++.+.|..++=.|+=+|+|..-+.+.|.|
T Consensus        13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~y~~i~L   63 (63)
T d2isya1          13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLEL   63 (63)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEC
T ss_conf             999998558977099999996899443999999999888988768984149


No 40 
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=88.61  E-value=0.14  Score=26.36  Aligned_cols=45  Identities=18%  Similarity=0.109  Sum_probs=40.5

Q ss_pred             HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999998588988999999982-999999999999999941798647
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      -.|+..|...+..+++|.+.. |++...++..|-+||-.|.|.|..
T Consensus        23 l~Il~~L~~g~~rF~el~~~l~gIs~~~Ls~rLkeL~~~glv~r~~   68 (102)
T d2fswa1          23 LLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ   68 (102)
T ss_dssp             HHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf             9999998369988999976572556468999999999889604324


No 41 
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=88.54  E-value=0.16  Score=25.99  Aligned_cols=56  Identities=13%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             CCCCCCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             688799989999999858---89889999999829999999999999999417986479
Q gi|254780305|r   27 HYPEYTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        27 ~~p~~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      ..+-..+..+-.||..|.   ..++++-+|+...+++.+.++.++-.||=+|+|.|.+.
T Consensus        25 ~~~~~Lt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~   83 (115)
T d1hsja1          25 KKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS   83 (115)
T ss_dssp             SSSCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEEC
T ss_pred             HHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             74559999999999999806899948999999978885359999999998687698760


No 42 
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.19  E-value=0.32  Score=24.41  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             HHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9998588-98899999998299999999999999994179864798
Q gi|254780305|r   39 IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        39 Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      .|..|++ +.+..-+|+++.+++-..|..+|-.||-+|.+.+..|-
T Consensus         7 ~l~~lg~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~gt   52 (59)
T d2gxba1           7 FLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT   52 (59)
T ss_dssp             HHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSS
T ss_pred             HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf             9996288520349999999688699999999999975526536899


No 43 
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=87.91  E-value=0.16  Score=26.07  Aligned_cols=53  Identities=15%  Similarity=0.102  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r   31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ..+..+-.||..|.. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus        27 glt~~q~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~   80 (136)
T d2fbia1          27 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAP   80 (136)
T ss_dssp             TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             979999999999997699899999999887898899999999988997984557


No 44 
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=87.64  E-value=0.22  Score=25.33  Aligned_cols=53  Identities=11%  Similarity=0.045  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r   31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ..+..+-.|+..|+. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus        29 ~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~   82 (140)
T d2etha1          29 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDP   82 (140)
T ss_dssp             HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             999999999999998699599999999896987999999999878896663133


No 45 
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=87.39  E-value=0.14  Score=26.40  Aligned_cols=42  Identities=10%  Similarity=0.211  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             988999999982999999999999999941798647986898
Q gi|254780305|r   46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      .+++.-+|+++++++.+.++.+|-.||-+|+|.|-..|+...
T Consensus        20 ~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~   61 (85)
T d3ctaa1          20 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQI   61 (85)
T ss_dssp             EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             998899999998878878999999999879804312455430


No 46 
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=87.14  E-value=0.17  Score=25.86  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999998588988999999982-999999999999999941798647
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      -.|+..|...+..+++|.+.. |++...++..|-+||=.|.|.|..
T Consensus        27 l~Il~~L~~g~~RF~el~~~l~gis~~~Ls~rL~~Le~~glv~R~~   72 (114)
T d1yyva1          27 VLILVALRDGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVS   72 (114)
T ss_dssp             HHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999609999999997740335247999899999988873002


No 47 
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=87.03  E-value=0.24  Score=25.09  Aligned_cols=47  Identities=15%  Similarity=0.056  Sum_probs=41.4

Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999998588-98899999998299999999999999994179864798
Q gi|254780305|r   37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      .++++.|+. +-++.-+|++..|++-..|...|..|+=+|.|.+.+|.
T Consensus        13 k~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~t   60 (70)
T d1sfua_          13 KKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN   60 (70)
T ss_dssp             HHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC
T ss_conf             999974587777049999999598898988999999987985127996


No 48 
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.59  E-value=0.29  Score=24.65  Aligned_cols=47  Identities=6%  Similarity=0.115  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHHC----CCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9989999999858----8988999999982-999999999999999941798
Q gi|254780305|r   32 TQCERVRIKQSLN----NVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLC   78 (95)
Q Consensus        32 ~~~~~~~Il~~L~----~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~   78 (95)
                      +++-+++||+.+.    .+-+|+++|..+. +++.++|..++=+|.-.|.|-
T Consensus         4 Ls~~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IY   55 (69)
T d1dpua_           4 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY   55 (69)
T ss_dssp             SCHHHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             9899999999998388856838999998816999999999999998378555


No 49 
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=86.37  E-value=0.41  Score=23.84  Aligned_cols=46  Identities=9%  Similarity=0.141  Sum_probs=40.2

Q ss_pred             CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             988-9999999829999999999999999417986479868981379
Q gi|254780305|r   46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL   91 (95)
Q Consensus        46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~   91 (95)
                      +.+ +..+|++..+.+...|..+|-.|+-.|+|.+.+|.=+.+..+.
T Consensus        20 ~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~   66 (78)
T d3bwga1          20 DKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHK   66 (78)
T ss_dssp             CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCC
T ss_conf             99937999999988798999999999998893899718578983598


No 50 
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=86.21  E-value=0.15  Score=26.25  Aligned_cols=53  Identities=6%  Similarity=-0.056  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7999899999998588---9889999999829999999999999999417986479
Q gi|254780305|r   30 EYTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      ...+..+-.||..|..   .++++.+|++..+++.+.++.++-.||=+|+|.+...
T Consensus        30 ~~Lt~~q~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~   85 (125)
T d1p4xa1          30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRS   85 (125)
T ss_dssp             CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf             49988999999999984369867999999968882439999999998898102123


No 51 
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=85.62  E-value=0.36  Score=24.13  Aligned_cols=53  Identities=15%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             799989999999858--89889999999829999999999999999417986479
Q gi|254780305|r   30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      -..+..+-.||..|.  .+++.+.+|++..+++.+.++.++-.||=+|+|.+.+.
T Consensus        24 ~glt~~q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~   78 (137)
T d2fbha1          24 LGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAV   78 (137)
T ss_dssp             GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             5979999999999987699976999999989789899999999998577200577


No 52 
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.71  E-value=0.17  Score=25.89  Aligned_cols=49  Identities=14%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             HHHHHHHHHCC-CCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999998588-98899999998299999-999999999994179864798
Q gi|254780305|r   35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAP-VVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~-~v~~~LleLEL~G~i~~~pGg   83 (95)
                      -+.+|++.|.. .|...=.|+...|++-+ +|..+|-.||=+|.|.+..+.
T Consensus         6 ~eekI~~~L~~~g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~~t   56 (73)
T d1xmka1           6 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTT   56 (73)
T ss_dssp             HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSS
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCC
T ss_conf             999999999975984399999994997078875999999987780127998


No 53 
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=84.31  E-value=0.25  Score=24.99  Aligned_cols=53  Identities=8%  Similarity=0.008  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7999899999998588-9889999999829999999999999999417986479
Q gi|254780305|r   30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      -..+..+-.||..|+. .++...+|+...+++.+.++.++-.||=+|+|.+.+.
T Consensus        25 ~~lt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~   78 (144)
T d1lj9a_          25 LSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED   78 (144)
T ss_dssp             GTCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             698999999999998289989999999878247169999999996032010578


No 54 
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=84.16  E-value=0.97  Score=21.80  Aligned_cols=50  Identities=26%  Similarity=0.406  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHC-C--CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9989999999858-8--988999999982-----999999999999999941798647
Q gi|254780305|r   32 TQCERVRIKQSLN-N--VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        32 ~~~~~~~Il~~L~-~--~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      ....+..|++.|- .  .+.++|+|....     .++.++|+..|-.|+=.|+|.+..
T Consensus        14 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~   71 (134)
T d1mzba_          14 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN   71 (134)
T ss_dssp             CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred             CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             7989999999998489999999999999997388844799999999997413788886


No 55 
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=83.34  E-value=0.49  Score=23.40  Aligned_cols=43  Identities=14%  Similarity=0.025  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9889999999829999999999999999417986479868981
Q gi|254780305|r   46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      +.+...+|++..|++...|..+|-.|+-.|+|.+.+|.-+.++
T Consensus        24 ~~l~~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~V~   66 (69)
T d2hs5a1          24 ARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVR   66 (69)
T ss_dssp             CEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC
T ss_conf             9669999999989798999999999998896899759778964


No 56 
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=82.67  E-value=0.45  Score=23.60  Aligned_cols=53  Identities=15%  Similarity=0.162  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999899999998588---98899999998299999999999999994179864798
Q gi|254780305|r   31 YTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ..+..+-.||..+..   +++.+-+|+...+++.+.++.++-.||=+|+|.+.+..
T Consensus        30 ~Ls~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~~~   85 (115)
T d2frha1          30 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE   85 (115)
T ss_dssp             CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECC
T ss_conf             98999999999998089999889999999797886899999999846651321013


No 57 
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.05  E-value=0.79  Score=22.28  Aligned_cols=56  Identities=11%  Similarity=0.035  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             568879998999999985---88988999999982999999999999999941798647
Q gi|254780305|r   26 THYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP   81 (95)
Q Consensus        26 ~~~p~~~~~~~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p   81 (95)
                      +..-...+.+|..||+.+   |...+-.-+|..+|+++..++.-+|=.||-++.|....
T Consensus         5 a~k~~~l~~~E~lVY~~I~~ag~~GIW~~dir~ktnL~~~~l~K~LK~Lesk~lIK~Vk   63 (78)
T d2dk5a1           5 AGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK   63 (78)
T ss_dssp             CCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf             78773799899999999997165662499999873999899999999997368715441


No 58 
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=81.83  E-value=0.85  Score=22.12  Aligned_cols=53  Identities=11%  Similarity=0.077  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             99899999998588--988999999982----999999999999999941798647986
Q gi|254780305|r   32 TQCERVRIKQSLNN--VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGK   84 (95)
Q Consensus        32 ~~~~~~~Il~~L~~--~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~   84 (95)
                      ++.-|..|+++|=.  +|+.+-+|....    ++..++|...|-.|+=+|.|.+...|+
T Consensus         5 L~~~E~~IM~~lW~~g~~~t~~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~~~gr   63 (122)
T d2g9wa1           5 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDR   63 (122)
T ss_dssp             CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred             CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             77999999999984899956999999871247995878999999999789877860698


No 59 
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=81.40  E-value=0.53  Score=23.21  Aligned_cols=44  Identities=14%  Similarity=0.122  Sum_probs=39.6

Q ss_pred             CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             988-99999998299999999999999994179864798689813
Q gi|254780305|r   46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM   89 (95)
Q Consensus        46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~   89 (95)
                      +.+ +..+|++..+++...|..++-.|+-.|+|.+.+|.=+.+..
T Consensus        25 ~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~   69 (74)
T d1hw1a1          25 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN   69 (74)
T ss_dssp             SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEEECC
T ss_conf             998349999999897989999999999988918998084479878


No 60 
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=80.87  E-value=0.78  Score=22.33  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             CCCCHHHHHHHHHHCC-CCCCHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             7999899999998588-98899999998----299999999999999994179864798689
Q gi|254780305|r   30 EYTQCERVRIKQSLNN-VPIHIDDIIHH----TGIEAPVVYLVLLELDLAGRLCHHPEGKVS   86 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~----tgl~~~~v~~~LleLEL~G~i~~~pGg~v~   86 (95)
                      +..+..|..|+++|=. +|+.+.+|...    -++..++|...|-.|+=+|.|.+.-.|+..
T Consensus         5 ~~Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l~~~k~gr~~   66 (82)
T d1p6ra_           5 PQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVF   66 (82)
T ss_dssp             CCCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf             99999999999999957997899999985023697284799999999988986787059858


No 61 
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=80.58  E-value=0.78  Score=22.33  Aligned_cols=42  Identities=14%  Similarity=0.105  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             8899999998299999999999999994179864798689813
Q gi|254780305|r   47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM   89 (95)
Q Consensus        47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~   89 (95)
                      ++.-++|+...|.+...|+.+|-+|+=+|+|. .-+|.+.+..
T Consensus        27 ~lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~-~~~~~i~I~d   68 (73)
T d1zyba1          27 KVKMDDLARCLDDTRLNISKTLNELQDNGLIE-LHRKEILIPD   68 (73)
T ss_dssp             ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE-EETTEEEESC
T ss_pred             ECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECC
T ss_conf             06999999897988999999999999889899-6299999856


No 62 
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=79.63  E-value=1.2  Score=21.35  Aligned_cols=46  Identities=11%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             HHHHHHHHHH------CCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999985------8898899999998299--99999999999999417986
Q gi|254780305|r   34 CERVRIKQSL------NNVPIHIDDIIHHTGI--EAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        34 ~~~~~Il~~L------~~~p~~iD~l~~~tgl--~~~~v~~~LleLEL~G~i~~   79 (95)
                      .-++.||+++      ...|++.-+|++..++  +.++|...|-.||=+|.|.+
T Consensus         4 ~Rq~~IL~~Ive~y~~~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~   57 (87)
T d1stza1           4 DRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQ   57 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             899999999999999809846799999870889898999999999998786248


No 63 
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=78.24  E-value=0.44  Score=23.66  Aligned_cols=53  Identities=8%  Similarity=0.153  Sum_probs=46.8

Q ss_pred             CCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             799989999999858-89889999999829999999999999999417986479
Q gi|254780305|r   30 EYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      -..+..+-.|+..|. ..++..-+|++.++++.+.++.++-.||=+|+|.+...
T Consensus        30 ~glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~   83 (136)
T d2bv6a1          30 YNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERS   83 (136)
T ss_dssp             HTCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             697999999999997289979999999979788379999999997898797434


No 64 
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=77.67  E-value=1  Score=21.64  Aligned_cols=43  Identities=16%  Similarity=0.257  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9889999999829999999999999999417986479868981
Q gi|254780305|r   46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      -|.+-.+|+..+|.+...|+.+|-+|+-+|+|....-|++.+.
T Consensus        29 ~~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~~~~i~I~   71 (80)
T d1ft9a1          29 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIP   71 (80)
T ss_dssp             ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECS
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC
T ss_conf             3789999999979889999999999998898897899959988


No 65 
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=77.67  E-value=0.77  Score=22.36  Aligned_cols=54  Identities=4%  Similarity=0.068  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99899999998588-988999999982----9999999999999999417986479868
Q gi|254780305|r   32 TQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        32 ~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      .+..|..|+++|=. +|+.+-+|...+    +|+.++|...|-.|+=+|.|.+.--|+.
T Consensus         4 ls~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~Kg~l~~~~~gr~   62 (122)
T d1sd4a_           4 ISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENI   62 (122)
T ss_dssp             CCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCE
T ss_conf             88999999999984799779999998414589958589999999986102035336980


No 66 
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=77.17  E-value=0.53  Score=23.21  Aligned_cols=53  Identities=17%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             HHHHHHHH--CCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf             99999985--8898899999998299999---99999999999417986--479868981
Q gi|254780305|r   36 RVRIKQSL--NNVPIHIDDIIHHTGIEAP---VVYLVLLELDLAGRLCH--HPEGKVSLT   88 (95)
Q Consensus        36 ~~~Il~~L--~~~p~~iD~l~~~tgl~~~---~v~~~LleLEL~G~i~~--~pGg~v~l~   88 (95)
                      +-.|.+.|  +..|.++++|+.+++.+..   .+..+|=-|--.|.+..  -.+|+|+++
T Consensus        31 eLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~~~~~Y~lt   90 (101)
T d1fp2a1          31 EMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALT   90 (101)
T ss_dssp             HTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred             HCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEECC
T ss_conf             948688998768999999999874998765158999999997579514432899827348


No 67 
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=77.03  E-value=1  Score=21.75  Aligned_cols=46  Identities=22%  Similarity=0.148  Sum_probs=39.8

Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999998588-9889999999829999999999999999417986479
Q gi|254780305|r   37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE   82 (95)
Q Consensus        37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG   82 (95)
                      ..|+..|+. .+-.--||+...|++.-+..--|+-||-.|.|+|-|=
T Consensus         3 n~Il~fl~~~~~~~T~EIAea~gvsaYQARyYL~~Lekegki~RsPl   49 (73)
T d2htja1           3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPL   49 (73)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             08999988448963789999963389999999999877157014845


No 68 
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=77.00  E-value=1.4  Score=20.91  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHH
Q ss_conf             87999899999998588988-99999998299999999
Q gi|254780305|r   29 PEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVY   65 (95)
Q Consensus        29 p~~~~~~~~~Il~~L~~~p~-~iD~l~~~tgl~~~~v~   65 (95)
                      .-|.+.-+.+|++.|...|. .-|+|+++.|+++++|-
T Consensus       176 dvpidekeerileilrenpwtphdeiarrlglsvseve  213 (291)
T d2csba5         176 DVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE  213 (291)
T ss_dssp             TCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC
T ss_conf             79976478999999970899972899998487532313


No 69 
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=76.22  E-value=0.63  Score=22.84  Aligned_cols=59  Identities=10%  Similarity=0.025  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHHH---CC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             3568879998999999985---88-98899999998299999999999999994179864798
Q gi|254780305|r   25 ITHYPEYTQCERVRIKQSL---NN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        25 ~~~~p~~~~~~~~~Il~~L---~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ....+...+..+-.||..|   +. ..++.-+|++..+++.+.++.++-.||=+|+|.+.+..
T Consensus        53 ~~l~~~gLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~~  115 (172)
T d2fbka1          53 RTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDE  115 (172)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC--
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             999886979999999999985189999689999999786785799999999868984441355


No 70 
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=76.08  E-value=0.95  Score=21.87  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             HHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--CCCCEEEEECC
Q ss_conf             999985---889889999999829999999999999999417986--47986898137
Q gi|254780305|r   38 RIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH--HPEGKVSLTMH   90 (95)
Q Consensus        38 ~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~--~pGg~v~l~~~   90 (95)
                      +++-.|   ...+++.++|+++.+++..-+..+|-.|-=+|.|..  .+||| .|+..
T Consensus        11 ~~L~~la~~~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~-~L~~~   67 (138)
T d1ylfa1          11 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGA-GLLKD   67 (138)
T ss_dssp             HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCE-EESSC
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-EECCC
T ss_conf             9999998589986849999999796999999999999888986853499983-31478


No 71 
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=76.08  E-value=1.3  Score=21.11  Aligned_cols=40  Identities=15%  Similarity=0.097  Sum_probs=35.0

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             88999999982999999999999999941798647986898
Q gi|254780305|r   47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      |++-++|+..+|.+...|+.+|-+|+=.|+|. ..|+++.+
T Consensus        29 ~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~-~~~~~I~I   68 (69)
T d1i5za1          29 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS-AHGKTIVV   68 (69)
T ss_dssp             ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEE
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEE
T ss_conf             78999999897997999999999999889889-76999997


No 72 
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=74.40  E-value=1.7  Score=20.43  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=27.0

Q ss_pred             HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99998588-9889999999829999999999999
Q gi|254780305|r   38 RIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        38 ~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      .+|..|.. .|+++..|+..+|++..+|..+|-.
T Consensus         6 ~LLr~LA~G~PVs~~~LA~alg~~~~eV~~aL~~   39 (60)
T d1s6la1           6 PLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQ   39 (60)
T ss_dssp             HHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999994799858999998958999999999985


No 73 
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=74.22  E-value=1.6  Score=20.65  Aligned_cols=50  Identities=18%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEC
Q ss_conf             999858-898899999998299999999999999994179864--798689813
Q gi|254780305|r   39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PEGKVSLTM   89 (95)
Q Consensus        39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~--pGg~v~l~~   89 (95)
                      +|..|. .++++.++|++..+.+..-|..+|-.|.=+|.|...  +||.| |+.
T Consensus         9 ~L~~la~~~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGy-Lar   61 (127)
T d1xd7a_           9 ILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGAS-LKK   61 (127)
T ss_dssp             HHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCE-ESS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCC
T ss_conf             99998649998999999886959999999999999807651268999851-068


No 74 
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=73.28  E-value=1.2  Score=21.22  Aligned_cols=42  Identities=5%  Similarity=0.077  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9889999999829999999999999999417986479868981
Q gi|254780305|r   46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      -|.+-.+|+..+|.+...|+.+|-+|+=.|+|.. .++.+.+.
T Consensus        28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~-~~~~i~I~   69 (81)
T d2gaua1          28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL-DGKRIKII   69 (81)
T ss_dssp             CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE-ETTEEEES
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf             0689999999979989999999999998997896-39999983


No 75 
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=73.27  E-value=1.6  Score=20.65  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             HHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999858---8988999999982999999999999999941798
Q gi|254780305|r   37 VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC   78 (95)
Q Consensus        37 ~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~   78 (95)
                      +.++++-.   ..|.++-.|+.++++|.+.+...|.+|+=+|.+.
T Consensus        11 ~~L~eA~~e~~g~~WSLaklsKra~~PMS~LRR~LTqL~~aGl~~   55 (81)
T d2obpa1          11 LVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD   55 (81)
T ss_dssp             HHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             999998316899976388988661796899999999985068455


No 76 
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=71.74  E-value=1.2  Score=21.24  Aligned_cols=42  Identities=24%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9889999999829999999999999999417986479868981
Q gi|254780305|r   46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      -+++-++|+..+|.+...|+.+|-+|+-.|+|.. -+|.+.+.
T Consensus        28 i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~-~~~~i~I~   69 (82)
T d2zcwa1          28 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS-GYGKIQLL   69 (82)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEES
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf             0589999999989889999999999998998896-49999984


No 77 
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=71.21  E-value=2  Score=20.15  Aligned_cols=57  Identities=16%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHHH--------CCCCCCHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9998999999985--------889889999999829----------99999999999999941798647986898
Q gi|254780305|r   31 YTQCERVRIKQSL--------NNVPIHIDDIIHHTG----------IEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        31 ~~~~~~~~Il~~L--------~~~p~~iD~l~~~tg----------l~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      ..++.+.+|+.+|        ...|.+++.|...|+          ++-++|..+|-+|.-+|.|....|+++.-
T Consensus         6 ~Ls~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~E~eV~~ald~L~~~~Lv~~~~gsRv~k   80 (84)
T d3bz6a1           6 QLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSRADR   80 (84)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECCSSCCE
T ss_pred             CCCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf             058889778875200023587767626999998871646667650589999999999998788868630677644


No 78 
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=69.99  E-value=1.6  Score=20.66  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             988999999982999999999999999941798647986898
Q gi|254780305|r   46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL   87 (95)
Q Consensus        46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l   87 (95)
                      -|++-++|+..+|.+...|+.+|-+|+=.|+|.. -+|.+.+
T Consensus        29 ~~lt~~elA~~~g~sretvsr~l~~l~~~glI~~-~~~~i~I   69 (80)
T d3e5ua1          29 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK-KKNKIIV   69 (80)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----CEE
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEE
T ss_conf             3799999999988778899999999998996996-3999998


No 79 
>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=64.97  E-value=4.2  Score=18.40  Aligned_cols=55  Identities=16%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             998999999985889889999999829999999999999999417986479868981
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      ..+-+++||..++ ...+-|+|-+..+|+-.++--.|-.||--=.|++..|++ ..+
T Consensus        29 ~nPvRrkiLrmi~-kgrsedEIm~~l~LSkkqldYHLk~LE~GfciErvge~w-~~T   83 (89)
T d1y0ua_          29 TNPVRRKILRMLD-KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERW-VVT   83 (89)
T ss_dssp             SCHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE-EEC
T ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCE-EEC
T ss_conf             4579999999997-347899999995657999999999987461268618823-553


No 80 
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=63.79  E-value=3  Score=19.20  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             8999999982999999999999
Q gi|254780305|r   48 IHIDDIIHHTGIEAPVVYLVLL   69 (95)
Q Consensus        48 ~~iD~l~~~tgl~~~~v~~~Ll   69 (95)
                      +.|.+|++.+|++.++|+.+|-
T Consensus         2 vTi~dvA~~agvS~~TVSr~Ln   23 (57)
T d2hsga1           2 VTIYDVAREASVSMATVSRVVN   23 (57)
T ss_dssp             CCHHHHHHHTTSCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHC
T ss_conf             6999999898959999999968


No 81 
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=62.99  E-value=4.5  Score=18.19  Aligned_cols=50  Identities=10%  Similarity=0.050  Sum_probs=41.8

Q ss_pred             HHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9999985---8898899999998299999999999999994179864798689
Q gi|254780305|r   37 VRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS   86 (95)
Q Consensus        37 ~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~   86 (95)
                      ++|..++   |..|-.+-+|+..+|++...+-..|--|-=.|.+.+...++|-
T Consensus        10 ~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~~d~yf   62 (64)
T d1lvaa3          10 KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW   62 (64)
T ss_dssp             HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             99999999869999959999989199999999999999978977985365401


No 82 
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=62.66  E-value=4.6  Score=18.16  Aligned_cols=39  Identities=5%  Similarity=-0.124  Sum_probs=33.2

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             998999999985889889999999829999999999999
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      +.+.++.|+..--.+-.++++|++..|++.+.|...+..
T Consensus        19 Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~r   57 (68)
T d1or7a1          19 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR   57 (68)
T ss_dssp             SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999999999990989999999989499999999999


No 83 
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=62.06  E-value=4.1  Score=18.46  Aligned_cols=47  Identities=23%  Similarity=0.259  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             988999999982--999999999999999941798647986898137998
Q gi|254780305|r   46 VPIHIDDIIHHT--GIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS   93 (95)
Q Consensus        46 ~p~~iD~l~~~t--gl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~~~   93 (95)
                      .-+..++|..+.  +++.....++|-.|.=+|.| ..-|++|+|..|-|+
T Consensus        25 ~G~~keeLr~~l~~~~~~~~f~~lL~~l~~~g~l-~~~g~~v~L~~f~ps   73 (73)
T d2v9va2          25 PGLAREELRSRYFSRLPARVYQALLEEWSREGRL-QLAANTVALAGFTPS   73 (73)
T ss_dssp             SCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSE-EECSSEEEETTCCCC
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH-HEECCEEECCCCCCC
T ss_conf             2879999997712349999999999999978970-000898788898999


No 84 
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=61.84  E-value=3.1  Score=19.11  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             88999999982999999999999
Q gi|254780305|r   47 PIHIDDIIHHTGIEAPVVYLVLL   69 (95)
Q Consensus        47 p~~iD~l~~~tgl~~~~v~~~Ll   69 (95)
                      ++.+.+|++.+|++.++|+.+|-
T Consensus         2 ~~Ti~diA~~agvS~sTVSr~l~   24 (59)
T d1efaa1           2 PVTLYDVAEYAGVSYQTVSRVVN   24 (59)
T ss_dssp             CCCHHHHHHTTTSCHHHHHHHHT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             88899999897979999999977


No 85 
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=61.83  E-value=4.8  Score=18.07  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=26.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      ..++..-|+..+++++|++++|++.+.++.
T Consensus        21 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~   50 (81)
T d1rkta1          21 KTVFKRKGFELTTMKDVVEESGFSRGGVYL   50 (81)
T ss_dssp             HHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998592517799999986949889988


No 86 
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=60.82  E-value=3.2  Score=18.99  Aligned_cols=41  Identities=10%  Similarity=0.173  Sum_probs=34.6

Q ss_pred             CCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88999999982999-9999999999999417986479868981
Q gi|254780305|r   47 PIHIDDIIHHTGIE-APVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        47 p~~iD~l~~~tgl~-~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      +++-++|+...|++ ..+|+.+|-+|+=.|+|... ++++.+.
T Consensus        31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~-~~~i~I~   72 (100)
T d2bgca1          31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK-NSCFYVQ   72 (100)
T ss_dssp             CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE-TTEEEES
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEC-CCEEEEE
T ss_conf             66999999883874488999999999879788975-9999992


No 87 
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=60.63  E-value=5  Score=17.95  Aligned_cols=31  Identities=16%  Similarity=0.121  Sum_probs=27.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|+.-+++++|++++|++.+.++..
T Consensus        12 ~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~   42 (68)
T d2d6ya1          12 VAEFARHGIAGARIDRIAAEARANKQLIYAY   42 (68)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999985925067999998878466289888


No 88 
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.99  E-value=4.1  Score=18.43  Aligned_cols=47  Identities=17%  Similarity=0.147  Sum_probs=35.6

Q ss_pred             HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9999998588--9889999999829999999999999999417986479868
Q gi|254780305|r   36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      ...|++.|-.  +.++|++|++.|++....|..+|-.|   |.+....|+.+
T Consensus       190 ~~~il~~l~~~~~~isI~~is~~T~i~~~Dii~tL~~l---~~l~~~~g~~~  238 (271)
T d2giva1         190 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL---NMVKYWKGQHV  238 (271)
T ss_dssp             HHHHHHHHC------CHHHHHHHHCBCHHHHHHHHHHT---TCEEEETTEEE
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHC---CCEEEECCEEE
T ss_conf             99999999736997209999998699889999999977---97898698089


No 89 
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=58.52  E-value=5.5  Score=17.75  Aligned_cols=30  Identities=10%  Similarity=0.089  Sum_probs=26.5

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|++.+++++|++++|++.+.++.
T Consensus        14 ~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~   43 (79)
T d2fbqa1          14 EQLFAEKGFAETSLRLITSKAGVNLAAVNY   43 (79)
T ss_dssp             HHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998693504099999998828557878


No 90 
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=57.63  E-value=5.7  Score=17.66  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|+.-+++++|++++|++.+.++-.
T Consensus        10 ~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~   40 (69)
T d2i10a1          10 MELFWRQGYEGTSITDLTKALGINPPSLYAA   40 (69)
T ss_dssp             HHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999987906277999999868786299888


No 91 
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=57.41  E-value=5.7  Score=17.64  Aligned_cols=40  Identities=5%  Similarity=-0.095  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             9998999999985889889999999829999999999999
Q gi|254780305|r   31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      .+++.++.|+..--....+..+|++..|++.++|...+..
T Consensus        21 ~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~r   60 (71)
T d1rp3a2          21 KLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAK   60 (71)
T ss_dssp             TSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7999999999999868489999999979899999999999


No 92 
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=56.81  E-value=2.9  Score=19.24  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.4

Q ss_pred             CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             8999999982999999999999
Q gi|254780305|r   48 IHIDDIIHHTGIEAPVVYLVLL   69 (95)
Q Consensus        48 ~~iD~l~~~tgl~~~~v~~~Ll   69 (95)
                      +.+.+|++.+|++.++|+.+|-
T Consensus         1 vTl~diA~~agvS~sTVSrvLn   22 (59)
T d1uxda_           1 MKLDEIARLAGVSRTTASYVIN   22 (59)
T ss_dssp             CCHHHHHHHHTSCTTHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9799999997969999999984


No 93 
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=53.45  E-value=0.94  Score=21.88  Aligned_cols=45  Identities=18%  Similarity=0.160  Sum_probs=39.4

Q ss_pred             CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             988-999999982999999999999999941798647986898137
Q gi|254780305|r   46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH   90 (95)
Q Consensus        46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~   90 (95)
                      +.+ ++.+|++..|++..+|..++-.|+-.|+|...+|.-+.++..
T Consensus        31 ~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~   76 (100)
T d1v4ra1          31 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN   76 (100)
T ss_dssp             SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCC
T ss_conf             9883699999998879899999999999889689964877897789


No 94 
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=52.56  E-value=6.9  Score=17.19  Aligned_cols=31  Identities=6%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|++-+++++|++.+|++.+.++..
T Consensus        14 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~   44 (72)
T d1pb6a1          14 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYY   44 (72)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999985925067999999869786799988


No 95 
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=51.89  E-value=5.9  Score=17.58  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=18.6

Q ss_pred             CHHHHHHHHCCCHHHHHHHHH
Q ss_conf             999999982999999999999
Q gi|254780305|r   49 HIDDIIHHTGIEAPVVYLVLL   69 (95)
Q Consensus        49 ~iD~l~~~tgl~~~~v~~~Ll   69 (95)
                      .|.+|++.+|++.++|+.+|-
T Consensus         2 Ti~dvA~~agVS~sTVSr~ln   22 (57)
T d1qpza1           2 TIKDVAKRANVSTTTVSHVIN   22 (57)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHC
T ss_conf             899999998959999999977


No 96 
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=51.60  E-value=7.2  Score=17.11  Aligned_cols=39  Identities=10%  Similarity=0.113  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             998999999985889889999999829999999999999
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      +.+.++.|+..--++-.+..+|+..+|++.+.|...|..
T Consensus        17 Lp~~qR~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~R   55 (106)
T d1s7oa_          17 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKR   55 (106)
T ss_dssp             SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999998989991999999999989699999999999


No 97 
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=51.23  E-value=7.3  Score=17.07  Aligned_cols=30  Identities=13%  Similarity=0.048  Sum_probs=26.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      ..++..-|++-+++++|+.++|++.+.++-
T Consensus        14 ~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~   43 (74)
T d2g7sa1          14 RTLIIRGGYNSFSYADISQVVGIRNASIHH   43 (74)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf             999998591506799999987818416988


No 98 
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=49.76  E-value=7.7  Score=16.94  Aligned_cols=30  Identities=13%  Similarity=0.364  Sum_probs=26.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+.-+++++|++.+|++.+.++.
T Consensus        15 ~~l~~~~G~~~~si~~Ia~~agvs~~~~y~   44 (71)
T d1ui5a1          15 ADLFDRRGYESTTLSEIVAHAGVTKGALYF   44 (71)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998594626799999987948769998


No 99 
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=49.38  E-value=7.8  Score=16.91  Aligned_cols=42  Identities=14%  Similarity=0.270  Sum_probs=35.1

Q ss_pred             HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999858-898899999998299999999999999994179864
Q gi|254780305|r   39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH   80 (95)
Q Consensus        39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~   80 (95)
                      |-+++- ..-...++|.+....|..-|-++|-.|+..|+|+|.
T Consensus         7 vRD~iAL~G~~da~qlS~qL~~P~Plv~AMLerL~aMGK~eri   49 (78)
T d1xn7a_           7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEC
T ss_conf             9999997171339999888748847999999999972020131


No 100
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=49.34  E-value=7.8  Score=16.91  Aligned_cols=30  Identities=10%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+..+++++|++++|++.+.++.
T Consensus        17 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~   46 (78)
T d2o7ta1          17 CNLYRTHHHDSLTMENIAEQAGVGVATLYR   46 (78)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998491406799999883998879999


No 101
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.30  E-value=8.5  Score=16.73  Aligned_cols=30  Identities=13%  Similarity=0.092  Sum_probs=26.7

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      ..++..-|+.-+++++|++.+|++.+.++.
T Consensus        10 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~   39 (70)
T d2gena1          10 LACFSEHGVDATTIEMIRDRSGASIGSLYH   39 (70)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998592408799999987958779998


No 102
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=47.02  E-value=8.6  Score=16.70  Aligned_cols=31  Identities=6%  Similarity=0.021  Sum_probs=26.7

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|++.+++++|+.++|++.+.++..
T Consensus        14 ~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~   44 (73)
T d2fx0a1          14 KKKFGERGYEGTSIQEIAKEAKVNVAMASYY   44 (73)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999986935176999999878486499988


No 103
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=46.49  E-value=8.7  Score=16.65  Aligned_cols=30  Identities=7%  Similarity=0.026  Sum_probs=26.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      ..++..-|..-+++++|++.+|++.+.++-
T Consensus        11 ~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~   40 (71)
T d1jt6a1          11 KELFIKNGYNATTTGEIVKLSESSKGNLYY   40 (71)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998591406799999987858759988


No 104
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=46.37  E-value=5.6  Score=17.72  Aligned_cols=44  Identities=16%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998588988999999982--------9999999999999999417986
Q gi|254780305|r   36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~   79 (95)
                      +-.||..|...|.|--+|.+..        +++.+.++.+|-.||=+|+|..
T Consensus         9 ~~~IL~lL~~~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~GlI~~   60 (103)
T d1xmaa_           9 DTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKS   60 (103)
T ss_dssp             HHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf             9999999861894499999999997098535897765999999998899478


No 105
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=46.25  E-value=8.8  Score=16.63  Aligned_cols=44  Identities=20%  Similarity=0.186  Sum_probs=33.5

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998588988999999982999999999999999941798
Q gi|254780305|r   35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC   78 (95)
Q Consensus        35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~   78 (95)
                      |++.-|..|-..-.+.++|+++.|.+.+.|...|--|.|.-.|+
T Consensus         7 EeA~a~~~L~e~g~t~~~iA~~~Gks~~~V~~~LrLl~L~~~v~   50 (93)
T d1vz0a1           7 EEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEAL   50 (93)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998499999999998514699999998999899999


No 106
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=46.06  E-value=8.9  Score=16.62  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9998999999985889889999999829999999999999999417986479868
Q gi|254780305|r   31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      |.++  .+|-++++.+  .|+++++++|++..++...|-+.==+=+=+..|+|.+
T Consensus        58 pIs~--~ql~~~lG~d--~l~~lA~q~Gl~~~~~~~~LA~~LP~~Vd~lTP~G~l  108 (129)
T d1z67a1          58 SVSG--EQLESALGTN--AVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEV  108 (129)
T ss_dssp             CCCH--HHHHHHHCHH--HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTSCC
T ss_pred             CCCH--HHHHHHHCHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9799--9999884979--9999999989199999999999967998643979989


No 107
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=45.92  E-value=8.9  Score=16.60  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=35.5

Q ss_pred             HHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985--88988999999982999999999999999941798
Q gi|254780305|r   37 VRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC   78 (95)
Q Consensus        37 ~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~   78 (95)
                      .+|++.|  ..+-++=++|+..+|+.++.|-.+|..|-=.|.+.
T Consensus        21 ~~v~~~L~~~~~evtDe~iA~~tgi~in~VRk~Ly~L~~~~L~~   64 (88)
T d1q1ha_          21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVS   64 (88)
T ss_dssp             HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf             99999988636767899999996996999999999998689668


No 108
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=45.75  E-value=9  Score=16.59  Aligned_cols=30  Identities=10%  Similarity=0.156  Sum_probs=26.6

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+..+++++|++.+|++.+.++.
T Consensus        14 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~   43 (74)
T d1v7ba1          14 IDYIGEYSLETLSYDSLAEATGLSKSGLIY   43 (74)
T ss_dssp             HHHHHHSCSTTCCHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf             999998595635799999884969223855


No 109
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=45.55  E-value=9  Score=16.57  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999985889889999999829999999999999
Q gi|254780305|r   36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      ..++...+|-+| ++++|+..+|++..+|..+|-.
T Consensus        21 ~~~l~q~lgReP-T~~EiA~~l~~~~e~V~~~l~a   54 (57)
T d1l0oc_          21 KDELSKTRGRAP-TVTEIADHLGISPEDVVLAQEA   54 (57)
T ss_dssp             HHHHHHHHTSCC-BHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCC-CHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999998729998-9999999979399999999998


No 110
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.35  E-value=7  Score=17.17  Aligned_cols=47  Identities=23%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             HHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999999858---89889999999829999999999999999417986479868
Q gi|254780305|r   36 RVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        36 ~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      ...|++.|-   ...++|++|++.|++....|..+|-.|.+   +....|+++
T Consensus       190 ~~~i~~~L~~~~~~~~si~dis~~T~i~~~Dii~tL~~l~~---l~~~~~~~~  239 (270)
T d2ozua1         190 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRM---LDFRSDQFV  239 (270)
T ss_dssp             HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHTTC---C--------
T ss_pred             HHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHCCC---EEEECCEEE
T ss_conf             99999999847999466999999869988899999997798---899899489


No 111
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=44.93  E-value=9.3  Score=16.52  Aligned_cols=30  Identities=7%  Similarity=0.117  Sum_probs=26.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|++-+++++|++.+|++.+.++-
T Consensus        11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~   40 (69)
T d2np5a1          11 FDVAAESGLEGASVREVAKRAGVSIGAVQH   40 (69)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998491406799999883988879988


No 112
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=44.41  E-value=9.4  Score=16.47  Aligned_cols=31  Identities=10%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|.+-+++++|++++|++.+.++..
T Consensus        14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~   44 (69)
T d2fq4a1          14 YELLLESGFKAVTVDKIAERAKVSKATIYKW   44 (69)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999983924077999999978588799999


No 113
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=43.36  E-value=9.8  Score=16.38  Aligned_cols=30  Identities=23%  Similarity=0.450  Sum_probs=26.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+.-+++++|++++|++.+.++-
T Consensus        13 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~   42 (73)
T d1t56a1          13 ENLLEDRPLADISVDDLAKGAGISRPTFYF   42 (73)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999997591507799999986988889988


No 114
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=42.94  E-value=10  Score=16.34  Aligned_cols=30  Identities=7%  Similarity=0.175  Sum_probs=26.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      ..++..-|++-+++++|++++|++.+.++.
T Consensus        14 ~~l~~~~g~~~~si~~ia~~~gvs~~~~y~   43 (68)
T d2g7la1          14 VALMRAEGLEKVTMRRLAQELDTGPASLYV   43 (68)
T ss_dssp             HHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998490307899999997828767628


No 115
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=42.90  E-value=10  Score=16.34  Aligned_cols=41  Identities=10%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99989999999858898899999998299999999999999
Q gi|254780305|r   31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL   71 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleL   71 (95)
                      ..|-....|.++|-..-+++-.|++..|++.+++..+|..-
T Consensus         6 ~~dWh~adI~AaL~krG~sLa~lsr~~gls~stl~naL~rp   46 (74)
T d1nera_           6 ARDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALERH   46 (74)
T ss_dssp             SSSCCHHHHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTSS
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             68889999999999968879999999099878999998377


No 116
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=42.72  E-value=10  Score=16.32  Aligned_cols=30  Identities=13%  Similarity=0.017  Sum_probs=26.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|++-+++++|++++|++.+.++.
T Consensus        15 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~   44 (75)
T d2hyja1          15 AEIASEEGLDGITIGRLAEELEMSKSGVHK   44 (75)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTCCHHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999997590307699999988909899988


No 117
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=42.37  E-value=10  Score=16.29  Aligned_cols=48  Identities=13%  Similarity=0.129  Sum_probs=32.1

Q ss_pred             HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHH------HHHHHCCCCEEEEECC
Q ss_conf             5889889999999829--9999999999999994------1798647986898137
Q gi|254780305|r   43 LNNVPIHIDDIIHHTG--IEAPVVYLVLLELDLA------GRLCHHPEGKVSLTMH   90 (95)
Q Consensus        43 L~~~p~~iD~l~~~tg--l~~~~v~~~LleLEL~------G~i~~~pGg~v~l~~~   90 (95)
                      .+.+|+++++|++..+  .+.+.+..+|-+|.-+      |.-...-||.|++.+.
T Consensus        18 as~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~gy~~~tk   73 (85)
T d1t6sa1          18 SSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTE   73 (85)
T ss_dssp             HCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEEC
T ss_pred             HCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEH
T ss_conf             54899899999998755899999999999999998507986799999999899882


No 118
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=42.17  E-value=10  Score=16.28  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=26.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|++.+++++|++++|++.+.++-
T Consensus        15 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~   44 (75)
T d3c07a1          15 MRLFQERGYDRTTMRAIAQEAGVSVGNAYY   44 (75)
T ss_dssp             HHHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999997491407799999987939879998


No 119
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=41.42  E-value=11  Score=16.21  Aligned_cols=30  Identities=13%  Similarity=0.327  Sum_probs=26.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|++-+++++|+++.|++.+.++.
T Consensus        19 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~   48 (79)
T d2oi8a1          19 WEQIATAGASALSLNAIAKRMGMSGPALYR   48 (79)
T ss_dssp             HHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf             999998690306799999986799774455


No 120
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.26  E-value=6.4  Score=17.38  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=34.0

Q ss_pred             HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9999998588--9889999999829999999999999999417986479868
Q gi|254780305|r   36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      ...|++.|-.  ..++|++|++.|++....+..+|-.|.+   +...-|+.+
T Consensus       193 ~~~i~~~l~~~~~~isi~~is~~T~i~~~Dii~tL~~l~~---l~~~~g~~~  241 (273)
T d1fy7a_         193 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNI---LRYYKGQHI  241 (273)
T ss_dssp             HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHHTC---EEEETTEEE
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCC---EEEECCEEE
T ss_conf             9999999985799733999998609999999999987798---999799079


No 121
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=41.08  E-value=11  Score=16.18  Aligned_cols=30  Identities=7%  Similarity=0.088  Sum_probs=25.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+..+++++|++++|++.+.++-
T Consensus        16 ~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~   45 (77)
T d2gfna1          16 LALIAREGISAVTTRAVAEESGWSTGVLNH   45 (77)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998590405799999987888779988


No 122
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=41.00  E-value=11  Score=16.17  Aligned_cols=31  Identities=13%  Similarity=0.158  Sum_probs=26.9

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|+.-+++++|+.++|++.+.++..
T Consensus        16 ~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~   46 (68)
T d2id3a1          16 GDALAADGFDALDLGEIARRAGVGKTTVYRR   46 (68)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999984934077999999978688799999


No 123
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=40.41  E-value=11  Score=16.20  Aligned_cols=29  Identities=14%  Similarity=0.393  Sum_probs=25.8

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             99999858898899999998299999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY   65 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~   65 (95)
                      .+++..-|++-+++++|++++|++.+.++
T Consensus        13 ~~l~~~~G~~~~t~~~Ia~~agvs~~slY   41 (72)
T d1zk8a1          13 AEIADANGVQEVTLASLAQTLGVRSPSLY   41 (72)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
T ss_conf             99999869775669999999597999998


No 124
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=40.15  E-value=9.8  Score=16.37  Aligned_cols=31  Identities=16%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|+.-+++++|++.+|++.+.++-.
T Consensus        12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~   42 (73)
T d1sgma1          12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHF   42 (73)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999984924177999999868887799998


No 125
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=38.66  E-value=12  Score=15.97  Aligned_cols=30  Identities=17%  Similarity=0.339  Sum_probs=26.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+.-+++++|++++|++.+.++.
T Consensus        11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~   40 (72)
T d1vi0a1          11 VEVIAENGYHQSQVSKIAKQAGVADGTIYL   40 (72)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998590415599999987949879988


No 126
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=36.84  E-value=13  Score=15.80  Aligned_cols=39  Identities=8%  Similarity=0.044  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             998999999985889889999999829999999999999
Q gi|254780305|r   32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      +...++.|+..--++-.+..+|+...|++.+.|...+..
T Consensus        19 Lpe~QR~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~R   57 (106)
T d1xsva_          19 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRR   57 (106)
T ss_dssp             SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999999999990875999999989599999999999


No 127
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.07  E-value=13  Score=15.73  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf             999858-898899999998299999999999999994179864---798689813799
Q gi|254780305|r   39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGKVSLTMHLP   92 (95)
Q Consensus        39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~---pGg~v~l~~~~~   92 (95)
                      .++.+- ..-+.+|+|+.+-++....+..-+-+||-.|+|.-.   -|.++-++---|
T Consensus        12 FI~~Ik~~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s~~   69 (72)
T d1wi9a_          12 FINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP   69 (72)
T ss_dssp             HHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC
T ss_pred             HHHHHHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCC
T ss_conf             9999998787639999988299679999999999987986557858988899737999


No 128
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.82  E-value=10  Score=16.30  Aligned_cols=29  Identities=10%  Similarity=0.203  Sum_probs=24.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             99999858898899999998299999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY   65 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~   65 (95)
                      .+++..-|+.-+++++|++.+|++.+.++
T Consensus        17 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y   45 (76)
T d2fd5a1          17 TQALLERGAVEPSVGEVMGAAGLTVGGFY   45 (76)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHTTCCGGGGG
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHH
T ss_conf             99999849130569999998389955004


No 129
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.93  E-value=12  Score=15.82  Aligned_cols=35  Identities=14%  Similarity=0.088  Sum_probs=31.5

Q ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             89889999999829999999999999999417986
Q gi|254780305|r   45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~   79 (95)
                      +.-++++.|++..+++..++-..|.+|=..|+|..
T Consensus        28 Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~a   62 (84)
T d1ufma_          28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNG   62 (84)
T ss_dssp             CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCE
T ss_pred             HCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
T ss_conf             02566999999978799999999999985695899


No 130
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=32.90  E-value=7.9  Score=16.88  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             99999858898899999998299999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY   65 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~   65 (95)
                      .+++..-|+.-+++.+|++++|++.+.++
T Consensus        16 ~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y   44 (71)
T d2iu5a1          16 KDLMQSNAYHQISVSDIMQTAKIRRQTFY   44 (71)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf             99999849640779999987571645897


No 131
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=32.39  E-value=9.6  Score=16.43  Aligned_cols=30  Identities=13%  Similarity=0.389  Sum_probs=26.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|.+-+++.+|++++|++.+.++-
T Consensus         9 ~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~   38 (62)
T d2vkva1           9 LELGNEVGIEGLTTRKLAQKLGVEQPTLYW   38 (62)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998393517899999880988889998


No 132
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.96  E-value=15  Score=15.36  Aligned_cols=50  Identities=10%  Similarity=-0.066  Sum_probs=41.1

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9999985889889999999829999999999999999417986479868981
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT   88 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~   88 (95)
                      ..||..+. +...+-.|...++++-..+...|-.|+=+|.|.. -++.|.++
T Consensus         9 ~DIL~~~~-~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~-~~~~Y~iT   58 (90)
T d1r7ja_           9 QAILEACK-SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-EGKQYMLT   58 (90)
T ss_dssp             HHHHHHHT-TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC
T ss_pred             HHHHHHHH-CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC
T ss_conf             99999976-7998207789719999999999999998889663-69878988


No 133
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=31.21  E-value=15  Score=15.39  Aligned_cols=33  Identities=9%  Similarity=0.194  Sum_probs=25.3

Q ss_pred             HHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999858---8988999999982999999999999
Q gi|254780305|r   37 VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLL   69 (95)
Q Consensus        37 ~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~Ll   69 (95)
                      ++|++.+.   .+++.+++|++.+|++...+....-
T Consensus         6 ~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk   41 (54)
T d1bl0a1           6 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK   41 (54)
T ss_dssp             HHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999986547999999999998939999999999


No 134
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.83  E-value=16  Score=15.25  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CHHHHHHHHHHCCCC-CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             989999999858898-89999999829999999999999
Q gi|254780305|r   33 QCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLE   70 (95)
Q Consensus        33 ~~~~~~Il~~L~~~p-~~iD~l~~~tgl~~~~v~~~Lle   70 (95)
                      ..+..+|+..+...+ ..--+|++.-|++.++|+.+|=.
T Consensus        10 ~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn   48 (66)
T d1hlva1          10 FREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN   48 (66)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999999998087210999999959976479999987


No 135
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=30.08  E-value=16  Score=15.21  Aligned_cols=29  Identities=14%  Similarity=0.406  Sum_probs=23.6

Q ss_pred             HHHHH-HCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             99998-588988999999982999999999
Q gi|254780305|r   38 RIKQS-LNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        38 ~Il~~-L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      +++.. -|++-+++++|++++|++.+.++.
T Consensus        13 ~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~   42 (68)
T d1z0xa1          13 SLLEKSPTLEQLSMRKVAKQLGVQAPAIYW   42 (68)
T ss_dssp             HHHHHSCCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred             HHHHHCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999876792316799999987726568999


No 136
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=29.23  E-value=17  Score=15.09  Aligned_cols=29  Identities=14%  Similarity=0.106  Sum_probs=23.8

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+. +++++|++++|++.+.++.
T Consensus        11 ~~l~~~~G~~-~t~~~Ia~~agvs~~~~Y~   39 (70)
T d2hkua1          11 TELFLEHGEG-VPITQICAAAGAHPNQVTY   39 (70)
T ss_dssp             HHHHHHHCTT-SCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHCCCC-CHHHHHHHHHCCCHHHHHH
T ss_conf             9998761357-4499999887888536873


No 137
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.61  E-value=17  Score=15.03  Aligned_cols=48  Identities=17%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99899999998588-9889999999829999999999999999417986
Q gi|254780305|r   32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~   79 (95)
                      .+.-+..||-+... +.+++++|+..+|++...+...|.-|--.+.+.+
T Consensus       193 vs~~Qa~ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll~~  241 (276)
T d1ldja3         193 ASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL  241 (276)
T ss_dssp             CCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEEC
T ss_pred             ECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE
T ss_conf             7899999998615777657999999879199999999999986897785


No 138
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.94  E-value=13  Score=15.65  Aligned_cols=31  Identities=13%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             HHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999858---898899999998299999999999
Q gi|254780305|r   38 RIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVL   68 (95)
Q Consensus        38 ~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~L   68 (95)
                      +|.+.+.   .+|+++++|++.+|++...+...-
T Consensus         7 ~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~F   40 (54)
T d1d5ya1           7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMF   40 (54)
T ss_dssp             HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999998744899999999999892999999999


No 139
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=27.86  E-value=13  Score=15.76  Aligned_cols=31  Identities=10%  Similarity=0.233  Sum_probs=26.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             9999985889889999999829999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV   67 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~   67 (95)
                      .+++..-|+.-+++.+|++++|++.+.++..
T Consensus        12 ~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~   42 (72)
T d2g3ba1          12 ATAIAQRGIRGLRVNDVAEVAGVSPGLLYYH   42 (72)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999983924077999998859697799988


No 140
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=27.36  E-value=18  Score=14.91  Aligned_cols=38  Identities=3%  Similarity=0.020  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHH----CCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             9998999999985----8898899999998299999999999
Q gi|254780305|r   31 YTQCERVRIKQSL----NNVPIHIDDIIHHTGIEAPVVYLVL   68 (95)
Q Consensus        31 ~~~~~~~~Il~~L----~~~p~~iD~l~~~tgl~~~~v~~~L   68 (95)
                      .+++-++.|+..-    +..|.++++|+...|++...|..+-
T Consensus        18 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie   59 (87)
T d1ttya_          18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIE   59 (87)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             399999999999727789996889999999598899999999


No 141
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=26.56  E-value=19  Score=14.86  Aligned_cols=46  Identities=11%  Similarity=0.060  Sum_probs=35.2

Q ss_pred             CCCHHHHHHHHHHCCC-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             9998999999985889-----889999999829999999999999999417
Q gi|254780305|r   31 YTQCERVRIKQSLNNV-----PIHIDDIIHHTGIEAPVVYLVLLELDLAGR   76 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~~-----p~~iD~l~~~tgl~~~~v~~~LleLEL~G~   76 (95)
                      ..++.+++|.+.+-..     -.++.+|++.|+.+.+.|....-.|-.+|+
T Consensus        15 ~Ls~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf   65 (83)
T d2o3fa1          15 KLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF   65 (83)
T ss_dssp             GSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSH
T ss_pred             HCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCH
T ss_conf             578999999999982999998831999999979899899999999589989


No 142
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=25.51  E-value=13  Score=15.70  Aligned_cols=30  Identities=13%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..=|..-+++++|+..+|++.+.++-
T Consensus        13 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~   42 (75)
T d2id6a1          13 VEVFGKKGYDRATTDEIAEKAGVAKGLIFH   42 (75)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHTCCTHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998393516799999884998889988


No 143
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=25.39  E-value=20  Score=14.70  Aligned_cols=44  Identities=18%  Similarity=0.052  Sum_probs=38.3

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998588988999999982--------9999999999999999417986
Q gi|254780305|r   36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCH   79 (95)
Q Consensus        36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~   79 (95)
                      .-.||..|...|.|=-+|.+..        +.+.++++..|-.||=+|.|..
T Consensus         3 ~~~iLg~L~~~~~~GYei~~~~~~~~~~~w~~s~g~iY~~L~kLe~~Gli~~   54 (178)
T d1yg2a_           3 PHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTC   54 (178)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             9999999860899899999999998488417997709999999997898477


No 144
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=24.89  E-value=21  Score=14.65  Aligned_cols=44  Identities=16%  Similarity=0.080  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             89999999858898899999998299999999999999994179
Q gi|254780305|r   34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL   77 (95)
Q Consensus        34 ~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i   77 (95)
                      -|+..-+..|-..-.+.++|+++.|.+.+.|+..|--+.+--.|
T Consensus        17 ~e~A~a~~~l~~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v   60 (114)
T d1r71a_          17 REIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKI   60 (114)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHH
T ss_conf             99999999998809989999999777299999999996799999


No 145
>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]}
Probab=22.18  E-value=23  Score=14.35  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             HHCCCCCC------HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             85889889------9999998299999999999999994179
Q gi|254780305|r   42 SLNNVPIH------IDDIIHHTGIEAPVVYLVLLELDLAGRL   77 (95)
Q Consensus        42 ~L~~~p~~------iD~l~~~tgl~~~~v~~~LleLEL~G~i   77 (95)
                      .=++++..      ++.|+.+||.++.++.+++-+|-.+|+=
T Consensus       235 ~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~gf~  276 (300)
T d2duca1         235 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMN  276 (300)
T ss_dssp             HTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCT
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             569756131067788887877487899999999999864769


No 146
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.97  E-value=9.3  Score=16.52  Aligned_cols=30  Identities=10%  Similarity=0.037  Sum_probs=25.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999998588988999999982999999999
Q gi|254780305|r   37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL   66 (95)
Q Consensus        37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~   66 (95)
                      .+++..-|+.-+++++|++.+|++.+.++-
T Consensus         6 ~~l~~~~G~~~~s~~~IA~~agvs~~~ly~   35 (65)
T d2np3a1           6 RVCFAERGFDATSLRRIAETAGVDQSLVHH   35 (65)
T ss_dssp             HHHC--------------------------
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             999998790407799999987868879998


No 147
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=20.80  E-value=25  Score=14.19  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=27.5

Q ss_pred             CCCCCHHHH-HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             879998999-9999858898899999998299999999999
Q gi|254780305|r   29 PEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL   68 (95)
Q Consensus        29 p~~~~~~~~-~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~L   68 (95)
                      |+-++.++. .+.+.+ ....++-+|++..|++.++++.-|
T Consensus         3 ~~~lt~~q~~~a~~l~-~~G~s~~~iA~~~gVSr~TiYry~   42 (47)
T d1ijwc_           3 PRAINKHEQEQISRLL-EKGHPRQQLAIIFGIGVSTLYRYF   42 (47)
T ss_dssp             CCSSCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             8859999999999999-889979999999796999998557


Done!