Query gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 95 No_of_seqs 103 out of 449 Neff 5.6 Searched_HMMs 13730 Date Wed Jun 1 02:09:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780305.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1mkma1 a.4.5.33 (A:1-75) Tran 97.0 0.00043 3.1E-08 39.9 5.0 52 38-89 9-62 (75) 2 d1ulya_ a.4.5.58 (A:) Hypothet 96.2 0.0043 3.1E-07 34.5 5.4 47 33-79 18-64 (190) 3 d1sfxa_ a.4.5.50 (A:) Hypothet 96.1 0.0038 2.8E-07 34.8 4.9 56 31-86 17-76 (109) 4 d1tw3a1 a.4.5.29 (A:14-98) Car 95.9 0.0035 2.6E-07 35.0 3.7 55 35-89 22-76 (85) 5 d1j5ya1 a.4.5.1 (A:3-67) Putat 95.8 0.0059 4.3E-07 33.8 4.7 50 36-85 9-61 (65) 6 d2p4wa1 a.4.5.64 (A:1-194) Tra 95.7 0.004 2.9E-07 34.7 3.6 48 33-80 14-61 (194) 7 d1ku9a_ a.4.5.36 (A:) DNA-bind 95.6 0.0068 5E-07 33.4 4.4 50 32-81 24-75 (151) 8 d1r1ta_ a.4.5.5 (A:) SmtB repr 95.6 0.0083 6.1E-07 33.0 4.7 54 32-85 21-74 (98) 9 d2d1ha1 a.4.5.50 (A:1-109) Hyp 95.4 0.0059 4.3E-07 33.8 3.4 53 31-83 18-72 (109) 10 d1jhfa1 a.4.5.2 (A:2-72) LexA 95.3 0.013 9.5E-07 31.9 4.9 54 31-84 2-62 (71) 11 d1biaa1 a.4.5.1 (A:1-63) Bioti 94.9 0.027 2E-06 30.2 5.7 56 33-88 4-61 (63) 12 d1r1ua_ a.4.5.5 (A:) Metal-sen 94.7 0.012 8.8E-07 32.1 3.4 57 32-88 16-75 (94) 13 d1u2wa1 a.4.5.5 (A:12-119) Cad 94.6 0.019 1.4E-06 31.0 4.2 56 33-88 30-89 (108) 14 d1ub9a_ a.4.5.28 (A:) Hypothet 93.3 0.02 1.4E-06 30.9 2.3 49 33-81 15-64 (100) 15 d1lnwa_ a.4.5.28 (A:) MexR rep 92.9 0.058 4.2E-06 28.4 4.2 53 30-82 32-85 (141) 16 d2hoea1 a.4.5.63 (A:10-71) N-a 92.5 0.027 1.9E-06 30.2 2.0 43 38-80 3-45 (62) 17 d2f2ea1 a.4.5.69 (A:5-146) Hyp 92.4 0.067 4.9E-06 28.1 3.9 45 37-81 23-67 (142) 18 d1z05a1 a.4.5.63 (A:10-80) Tra 92.2 0.068 5E-06 28.0 3.8 45 35-79 7-52 (71) 19 d1qzza1 a.4.5.29 (A:10-101) Ac 91.9 0.047 3.4E-06 28.9 2.7 51 35-85 28-78 (92) 20 d1okra_ a.4.5.39 (A:) Methicil 91.9 0.065 4.7E-06 28.2 3.4 55 31-85 4-63 (120) 21 d2hr3a1 a.4.5.28 (A:2-146) Pro 91.7 0.091 6.7E-06 27.4 4.0 54 30-83 30-85 (145) 22 d1jgsa_ a.4.5.28 (A:) Multiple 91.6 0.1 7.5E-06 27.1 4.2 57 27-83 27-84 (138) 23 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 91.4 0.07 5.1E-06 28.0 3.2 52 36-87 3-56 (57) 24 d1z6ra1 a.4.5.63 (A:12-81) Mlc 91.2 0.15 1.1E-05 26.3 4.6 46 35-80 6-52 (70) 25 d1p4xa2 a.4.5.28 (A:126-250) S 91.1 0.13 9.5E-06 26.5 4.3 52 31-82 30-84 (125) 26 d1s3ja_ a.4.5.28 (A:) Putative 91.1 0.058 4.2E-06 28.4 2.5 54 30-83 31-85 (143) 27 d3broa1 a.4.5.28 (A:3-137) Tra 90.9 0.15 1.1E-05 26.1 4.5 54 30-83 25-81 (135) 28 d2hzta1 a.4.5.69 (A:4-98) Puta 90.8 0.11 7.7E-06 27.0 3.6 45 37-81 14-59 (95) 29 d2fxaa1 a.4.5.28 (A:6-167) Pro 90.7 0.096 7E-06 27.2 3.3 56 28-83 35-91 (162) 30 d1i1ga1 a.4.5.32 (A:2-61) LprA 90.1 0.14 1E-05 26.4 3.7 46 35-80 4-50 (60) 31 d2a61a1 a.4.5.28 (A:5-143) Tra 89.9 0.13 9.3E-06 26.6 3.4 52 31-82 27-79 (139) 32 d2cyya1 a.4.5.32 (A:5-64) Puta 89.7 0.2 1.4E-05 25.6 4.2 48 33-80 2-50 (60) 33 d3deua1 a.4.5.28 (A:2-141) Tra 89.5 0.19 1.4E-05 25.7 4.0 57 27-83 24-82 (140) 34 d2cg4a1 a.4.5.32 (A:4-66) Regu 89.4 0.18 1.3E-05 25.8 3.8 47 33-79 4-51 (63) 35 d2cfxa1 a.4.5.32 (A:1-63) Tran 89.1 0.24 1.8E-05 25.0 4.3 48 32-79 3-51 (63) 36 d1z7ua1 a.4.5.69 (A:1-108) Hyp 89.0 0.12 8.6E-06 26.8 2.7 45 37-81 22-67 (108) 37 d1z91a1 a.4.5.28 (A:8-144) Org 89.0 0.14 1E-05 26.3 3.1 55 28-82 27-82 (137) 38 d2ev0a1 a.4.5.24 (A:2-62) Mang 89.0 0.16 1.1E-05 26.1 3.2 50 38-87 11-61 (61) 39 d2isya1 a.4.5.24 (A:2-64) Iron 88.9 0.3 2.2E-05 24.5 4.7 50 38-87 13-63 (63) 40 d2fswa1 a.4.5.69 (A:3-104) Hyp 88.6 0.14 1E-05 26.4 2.8 45 37-81 23-68 (102) 41 d1hsja1 a.4.5.28 (A:373-487) S 88.5 0.16 1.2E-05 26.0 3.1 56 27-82 25-83 (115) 42 d2gxba1 a.4.5.19 (A:140-198) Z 88.2 0.32 2.3E-05 24.4 4.4 45 39-83 7-52 (59) 43 d2fbia1 a.4.5.28 (A:5-140) Pro 87.9 0.16 1.1E-05 26.1 2.7 53 31-83 27-80 (136) 44 d2etha1 a.4.5.28 (A:1-140) Put 87.6 0.22 1.6E-05 25.3 3.3 53 31-83 29-82 (140) 45 d3ctaa1 a.4.5.28 (A:5-89) Ta10 87.4 0.14 1E-05 26.4 2.2 42 46-87 20-61 (85) 46 d1yyva1 a.4.5.69 (A:9-122) Put 87.1 0.17 1.3E-05 25.9 2.5 45 37-81 27-72 (114) 47 d1sfua_ a.4.5.19 (A:) 34L {Yab 87.0 0.24 1.7E-05 25.1 3.2 47 37-83 13-60 (70) 48 d1dpua_ a.4.5.16 (A:) C-termin 86.6 0.29 2.1E-05 24.7 3.4 47 32-78 4-55 (69) 49 d3bwga1 a.4.5.6 (A:5-82) Trans 86.4 0.41 3E-05 23.8 4.1 46 46-91 20-66 (78) 50 d1p4xa1 a.4.5.28 (A:1-125) Sta 86.2 0.15 1.1E-05 26.3 1.8 53 30-82 30-85 (125) 51 d2fbha1 a.4.5.28 (A:8-144) Tra 85.6 0.36 2.6E-05 24.1 3.5 53 30-82 24-78 (137) 52 d1xmka1 a.4.5.19 (A:294-366) Z 84.7 0.17 1.2E-05 25.9 1.5 49 35-83 6-56 (73) 53 d1lj9a_ a.4.5.28 (A:) Transcri 84.3 0.25 1.8E-05 25.0 2.2 53 30-82 25-78 (144) 54 d1mzba_ a.4.5.42 (A:) Ferric u 84.2 0.97 7.1E-05 21.8 5.2 50 32-81 14-71 (134) 55 d2hs5a1 a.4.5.6 (A:25-93) Puta 83.3 0.49 3.6E-05 23.4 3.4 43 46-88 24-66 (69) 56 d2frha1 a.4.5.28 (A:102-216) P 82.7 0.45 3.3E-05 23.6 3.0 53 31-83 30-85 (115) 57 d2dk5a1 a.4.5.85 (A:8-85) DNA- 82.0 0.79 5.8E-05 22.3 4.1 56 26-81 5-63 (78) 58 d2g9wa1 a.4.5.39 (A:3-124) Hyp 81.8 0.85 6.2E-05 22.1 4.1 53 32-84 5-63 (122) 59 d1hw1a1 a.4.5.6 (A:5-78) Fatty 81.4 0.53 3.9E-05 23.2 3.0 44 46-89 25-69 (74) 60 d1p6ra_ a.4.5.39 (A:) Penicill 80.9 0.78 5.7E-05 22.3 3.7 57 30-86 5-66 (82) 61 d1zyba1 a.4.5.4 (A:148-220) Pr 80.6 0.78 5.7E-05 22.3 3.6 42 47-89 27-68 (73) 62 d1stza1 a.4.5.51 (A:14-100) He 79.6 1.2 8.6E-05 21.4 4.3 46 34-79 4-57 (87) 63 d2bv6a1 a.4.5.28 (A:5-140) Tra 78.2 0.44 3.2E-05 23.7 1.7 53 30-82 30-83 (136) 64 d1ft9a1 a.4.5.4 (A:134-213) CO 77.7 1 7.6E-05 21.6 3.5 43 46-88 29-71 (80) 65 d1sd4a_ a.4.5.39 (A:) Penicill 77.7 0.77 5.6E-05 22.4 2.8 54 32-85 4-62 (122) 66 d1fp2a1 a.4.5.29 (A:8-108) Iso 77.2 0.53 3.9E-05 23.2 1.9 53 36-88 31-90 (101) 67 d2htja1 a.4.5.73 (A:1-73) P fi 77.0 1 7.2E-05 21.8 3.3 46 37-82 3-49 (73) 68 d2csba5 a.267.1.1 (A:3-293) To 77.0 1.4 0.0001 20.9 4.0 37 29-65 176-213 (291) 69 d2fbka1 a.4.5.28 (A:8-179) Tra 76.2 0.63 4.6E-05 22.8 2.0 59 25-83 53-115 (172) 70 d1ylfa1 a.4.5.55 (A:5-142) Hyp 76.1 0.95 6.9E-05 21.9 2.9 52 38-90 11-67 (138) 71 d1i5za1 a.4.5.4 (A:138-206) Ca 76.1 1.3 9.5E-05 21.1 3.7 40 47-87 29-68 (69) 72 d1s6la1 a.4.5.79 (A:21-80) Alk 74.4 1.7 0.00013 20.4 3.9 33 38-70 6-39 (60) 73 d1xd7a_ a.4.5.55 (A:) Hypothet 74.2 1.6 0.00012 20.6 3.7 50 39-89 9-61 (127) 74 d2gaua1 a.4.5.4 (A:152-232) Tr 73.3 1.2 9.1E-05 21.2 3.0 42 46-88 28-69 (81) 75 d2obpa1 a.4.5.71 (A:12-92) Put 73.3 1.6 0.00012 20.6 3.5 42 37-78 11-55 (81) 76 d2zcwa1 a.4.5.4 (A:118-199) Tr 71.7 1.2 9E-05 21.2 2.7 42 46-88 28-69 (82) 77 d3bz6a1 a.4.5.75 (A:13-96) Hyp 71.2 2 0.00014 20.1 3.6 57 31-87 6-80 (84) 78 d3e5ua1 a.4.5.4 (A:148-227) Ch 70.0 1.6 0.00012 20.7 2.9 41 46-87 29-69 (80) 79 d1y0ua_ a.4.5.5 (A:) Putative 65.0 4.2 0.0003 18.4 4.6 55 32-88 29-83 (89) 80 d2hsga1 a.35.1.5 (A:2-58) Gluc 63.8 3 0.00021 19.2 3.3 22 48-69 2-23 (57) 81 d1lvaa3 a.4.5.35 (A:511-574) C 63.0 4.5 0.00033 18.2 4.7 50 37-86 10-62 (64) 82 d1or7a1 a.4.13.2 (A:120-187) S 62.7 4.6 0.00034 18.2 5.0 39 32-70 19-57 (68) 83 d2v9va2 a.4.5.35 (A:438-510) C 62.1 4.1 0.0003 18.5 3.7 47 46-93 25-73 (73) 84 d1efaa1 a.35.1.5 (A:2-60) Lac 61.8 3.1 0.00022 19.1 3.1 23 47-69 2-24 (59) 85 d1rkta1 a.4.1.9 (A:2-82) Hypot 61.8 4.8 0.00035 18.1 4.4 30 37-66 21-50 (81) 86 d2bgca1 a.4.5.4 (A:138-237) Li 60.8 3.2 0.00024 19.0 3.0 41 47-88 31-72 (100) 87 d2d6ya1 a.4.1.9 (A:7-74) Putat 60.6 5 0.00037 18.0 4.3 31 37-67 12-42 (68) 88 d2giva1 d.108.1.1 (A:4-274) Pr 60.0 4.1 0.0003 18.4 3.4 47 36-85 190-238 (271) 89 d2fbqa1 a.4.1.9 (A:2-80) Trans 58.5 5.5 0.0004 17.7 4.4 30 37-66 14-43 (79) 90 d2i10a1 a.4.1.9 (A:10-78) Puta 57.6 5.7 0.00041 17.7 4.2 31 37-67 10-40 (69) 91 d1rp3a2 a.4.13.2 (A:164-234) S 57.4 5.7 0.00042 17.6 5.0 40 31-70 21-60 (71) 92 d1uxda_ a.35.1.5 (A:) Fructose 56.8 2.9 0.00021 19.2 2.2 22 48-69 1-22 (59) 93 d1v4ra1 a.4.5.6 (A:1-100) Tran 53.5 0.94 6.9E-05 21.9 -0.7 45 46-90 31-76 (100) 94 d1pb6a1 a.4.1.9 (A:14-85) Hypo 52.6 6.9 0.00051 17.2 4.2 31 37-67 14-44 (72) 95 d1qpza1 a.35.1.5 (A:2-58) Puri 51.9 5.9 0.00043 17.6 3.1 21 49-69 2-22 (57) 96 d1s7oa_ a.4.13.3 (A:) Hypothet 51.6 7.2 0.00052 17.1 4.5 39 32-70 17-55 (106) 97 d2g7sa1 a.4.1.9 (A:3-76) Putat 51.2 7.3 0.00053 17.1 3.6 30 37-66 14-43 (74) 98 d1ui5a1 a.4.1.9 (A:5-75) A-fac 49.8 7.7 0.00056 16.9 4.2 30 37-66 15-44 (71) 99 d1xn7a_ a.4.5.62 (A:) Hypothet 49.4 7.8 0.00057 16.9 3.5 42 39-80 7-49 (78) 100 d2o7ta1 a.4.1.9 (A:1-78) Trans 49.3 7.8 0.00057 16.9 3.5 30 37-66 17-46 (78) 101 d2gena1 a.4.1.9 (A:6-75) Proba 47.3 8.5 0.00062 16.7 4.3 30 37-66 10-39 (70) 102 d2fx0a1 a.4.1.9 (A:4-76) Hemol 47.0 8.6 0.00062 16.7 4.2 31 37-67 14-44 (73) 103 d1jt6a1 a.4.1.9 (A:2-72) Multi 46.5 8.7 0.00064 16.7 4.2 30 37-66 11-40 (71) 104 d1xmaa_ a.4.5.61 (A:) Predicte 46.4 5.6 0.0004 17.7 2.3 44 36-79 9-60 (103) 105 d1vz0a1 a.4.14.1 (A:116-208) P 46.2 8.8 0.00064 16.6 3.4 44 35-78 7-50 (93) 106 d1z67a1 a.259.1.1 (A:3-131) Hy 46.1 8.9 0.00065 16.6 4.6 51 31-85 58-108 (129) 107 d1q1ha_ a.4.5.41 (A:) Transcri 45.9 8.9 0.00065 16.6 3.8 42 37-78 21-64 (88) 108 d1v7ba1 a.4.1.9 (A:1-74) Trans 45.7 9 0.00065 16.6 4.0 30 37-66 14-43 (74) 109 d1l0oc_ a.4.13.2 (C:) SigmaF { 45.6 9 0.00066 16.6 4.9 34 36-70 21-54 (57) 110 d2ozua1 d.108.1.1 (A:507-776) 45.4 7 0.00051 17.2 2.7 47 36-85 190-239 (270) 111 d2np5a1 a.4.1.9 (A:9-77) Trans 44.9 9.3 0.00067 16.5 3.6 30 37-66 11-40 (69) 112 d2fq4a1 a.4.1.9 (A:9-77) Trans 44.4 9.4 0.00069 16.5 4.2 31 37-67 14-44 (69) 113 d1t56a1 a.4.1.9 (A:22-94) Ethr 43.4 9.8 0.00072 16.4 3.5 30 37-66 13-42 (73) 114 d2g7la1 a.4.1.9 (A:16-83) Puta 42.9 10 0.00073 16.3 3.7 30 37-66 14-43 (68) 115 d1nera_ a.35.1.2 (A:) Ner {Bac 42.9 10 0.00073 16.3 3.4 41 31-71 6-46 (74) 116 d2hyja1 a.4.1.9 (A:8-82) Putat 42.7 10 0.00073 16.3 3.6 30 37-66 15-44 (75) 117 d1t6sa1 a.4.5.60 (A:1-85) Segr 42.4 10 0.00074 16.3 4.1 48 43-90 18-73 (85) 118 d3c07a1 a.4.1.9 (A:15-89) Puta 42.2 10 0.00075 16.3 4.3 30 37-66 15-44 (75) 119 d2oi8a1 a.4.1.9 (A:8-86) Putat 41.4 11 0.00077 16.2 4.3 30 37-66 19-48 (79) 120 d1fy7a_ d.108.1.1 (A:) Histone 41.3 6.4 0.00047 17.4 2.0 47 36-85 193-241 (273) 121 d2gfna1 a.4.1.9 (A:4-80) Proba 41.1 11 0.00078 16.2 3.5 30 37-66 16-45 (77) 122 d2id3a1 a.4.1.9 (A:13-80) Puta 41.0 11 0.00078 16.2 3.6 31 37-67 16-46 (68) 123 d1zk8a1 a.4.1.9 (A:6-77) Trans 40.4 11 0.00077 16.2 3.0 29 37-65 13-41 (72) 124 d1sgma1 a.4.1.9 (A:5-77) Putat 40.1 9.8 0.00072 16.4 2.8 31 37-67 12-42 (73) 125 d1vi0a1 a.4.1.9 (A:6-77) Hypot 38.7 12 0.00085 16.0 3.5 30 37-66 11-40 (72) 126 d1xsva_ a.4.13.3 (A:) Hypothet 36.8 13 0.00091 15.8 5.1 39 32-70 19-57 (106) 127 d1wi9a_ a.4.5.47 (A:) Hypothet 36.1 13 0.00094 15.7 3.1 54 39-92 12-69 (72) 128 d2fd5a1 a.4.1.9 (A:1-76) Proba 34.8 10 0.00074 16.3 2.2 29 37-65 17-45 (76) 129 d1ufma_ a.4.5.47 (A:) COP9 sig 33.9 12 0.00091 15.8 2.5 35 45-79 28-62 (84) 130 d2iu5a1 a.4.1.9 (A:1-71) Trans 32.9 7.9 0.00058 16.9 1.4 29 37-65 16-44 (71) 131 d2vkva1 a.4.1.9 (A:6-67) Tetra 32.4 9.6 0.0007 16.4 1.7 30 37-66 9-38 (62) 132 d1r7ja_ a.4.5.49 (A:) Sso10a ( 32.0 15 0.0011 15.4 4.8 50 37-88 9-58 (90) 133 d1bl0a1 a.4.1.8 (A:9-62) MarA 31.2 15 0.0011 15.4 2.5 33 37-69 6-41 (54) 134 d1hlva1 a.4.1.7 (A:1-66) DNA-b 30.8 16 0.0012 15.2 4.3 38 33-70 10-48 (66) 135 d1z0xa1 a.4.1.9 (A:4-71) Trans 30.1 16 0.0012 15.2 2.6 29 38-66 13-42 (68) 136 d2hkua1 a.4.1.9 (A:18-87) Puta 29.2 17 0.0012 15.1 4.3 29 37-66 11-39 (70) 137 d1ldja3 e.40.1.1 (A:411-686) C 28.6 17 0.0013 15.0 4.1 48 32-79 193-241 (276) 138 d1d5ya1 a.4.1.8 (A:3-56) Rob t 27.9 13 0.00098 15.7 1.8 31 38-68 7-40 (54) 139 d2g3ba1 a.4.1.9 (A:2-73) Putat 27.9 13 0.00093 15.8 1.7 31 37-67 12-42 (72) 140 d1ttya_ a.4.13.2 (A:) Sigma70 27.4 18 0.0013 14.9 5.5 38 31-68 18-59 (87) 141 d2o3fa1 a.4.1.20 (A:1-83) Puta 26.6 19 0.0014 14.9 2.4 46 31-76 15-65 (83) 142 d2id6a1 a.4.1.9 (A:1-75) Trans 25.5 13 0.00096 15.7 1.4 30 37-66 13-42 (75) 143 d1yg2a_ a.4.5.61 (A:) Hypothet 25.4 20 0.0015 14.7 3.8 44 36-79 3-54 (178) 144 d1r71a_ a.4.14.1 (A:) Transcri 24.9 21 0.0015 14.6 4.1 44 34-77 17-60 (114) 145 d2duca1 b.47.1.4 (A:2-301) Cor 22.2 23 0.0017 14.4 3.9 36 42-77 235-276 (300) 146 d2np3a1 a.4.1.9 (A:35-99) Puta 21.0 9.3 0.00068 16.5 -0.1 30 37-66 6-35 (65) 147 d1ijwc_ a.4.1.2 (C:) HIN recom 20.8 25 0.0018 14.2 4.1 39 29-68 3-42 (47) No 1 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=97.03 E-value=0.00043 Score=39.92 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=47.8 Q ss_pred HHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 99998588--98899999998299999999999999994179864798689813 Q gi|254780305|r 38 RIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95) Q Consensus 38 ~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95) +|++.+.. .|+.+.+|++.+|++.+.++..|-.|+-.|++.+-+.|+|++.. T Consensus 9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~ 62 (75) T d1mkma1 9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGY 62 (75) T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECT T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECH T ss_conf 999999857999899999999791999999999999988998889999786329 No 2 >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} Probab=96.19 E-value=0.0043 Score=34.52 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=44.1 Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 98999999985889889999999829999999999999999417986 Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95) ++-+.+||..|...|.++.+|+..+|++.+.++..|-.|+=+|.|.. T Consensus 18 ~p~R~~Il~~L~~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~ 64 (190) T d1ulya_ 18 EDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEV 64 (190) T ss_dssp SHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 99999999999819987999999989199999999999998898389 No 3 >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=96.13 E-value=0.0038 Score=34.81 Aligned_cols=56 Identities=18% Similarity=-0.004 Sum_probs=47.5 Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC---CCEEE Q ss_conf 999899999998588-988999999982999999999999999941798647---98689 Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP---EGKVS 86 (95) Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p---Gg~v~ 86 (95) ..+..+.+||.+|-. .+.++.+|++.+|++.+.|+.+|-.||=+|+|.+.. |++.. T Consensus 17 Glt~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~ 76 (109) T d1sfxa_ 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGY 76 (109) T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEE T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 999999999999882389989999998579835599999999959987988505788502 No 4 >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Probab=95.86 E-value=0.0035 Score=35.00 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=50.3 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 9999999858898899999998299999999999999994179864798689813 Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95) Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95) .+-.|++.|...|.++++|+.++|.+...+...|--|.-.|++....+|.|+++- T Consensus 22 v~L~ifd~l~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~ 76 (85) T d1tw3a1 22 ATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTE 76 (85) T ss_dssp HHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECT T ss_pred HHCCCHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEECCH T ss_conf 9969287765499999999988492926999999999877975746999385699 No 5 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=95.82 E-value=0.0059 Score=33.79 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=43.8 Q ss_pred HHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEE Q ss_conf 999999858--89889999999829999999999999999417-986479868 Q gi|254780305|r 36 RVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKV 85 (95) Q Consensus 36 ~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v 85 (95) +.+|+..|. ..++++++|++..+++..+|..-+-+|+-.|. |.+.+|||+ T Consensus 9 ~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~gGY~ 61 (65) T d1j5ya1 9 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYV 61 (65) T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEE T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEE T ss_conf 99999999985997859999999798999999999999987992799679888 No 6 >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} Probab=95.75 E-value=0.004 Score=34.70 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=44.4 Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 989999999858898899999998299999999999999994179864 Q gi|254780305|r 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95) Q Consensus 33 ~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95) ++.+.+|+..|...|.++.+|++.+|++.+.|+-.|-.||=+|.|... T Consensus 14 ~~~R~~Il~~L~~~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~ 61 (194) T d2p4wa1 14 NETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESR 61 (194) T ss_dssp SHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 999999999998089879999999890998999999999988970799 No 7 >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=95.61 E-value=0.0068 Score=33.44 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=44.0 Q ss_pred CCHHHHHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 998999999985--88988999999982999999999999999941798647 Q gi|254780305|r 32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 32 ~~~~~~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95) .+..+.+|+..| +.+|+++++|++.+|++.+.++..|-.|+=+|.|.+.+ T Consensus 24 l~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~ 75 (151) T d1ku9a_ 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (151) T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 9999999999998489892899999986777024999999999889979987 No 8 >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Probab=95.55 E-value=0.0083 Score=32.97 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=48.4 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 998999999985889889999999829999999999999999417986479868 Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) .++.+.+|+..|...+..+-+|++.+|++.+.++-.|-.|+-+|+|...--|+. T Consensus 21 ~~p~Rl~Il~~L~~~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~~ 74 (98) T d1r1ta_ 21 ADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRH 74 (98) T ss_dssp CCHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCE T ss_conf 899999999999819967999999989298899999999998892489988798 No 9 >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Probab=95.37 E-value=0.0059 Score=33.80 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=45.3 Q ss_pred CCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99989999999858--898899999998299999999999999994179864798 Q gi|254780305|r 31 YTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 31 ~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ..+..+..||..|. .+|+.+++|++++|++.+.|+..|-.||=+|+|.+.+.. T Consensus 18 gLs~~~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~ 72 (109) T d2d1ha1 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109) T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC- T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 9599999999999976989889999999885676999999999978997985268 No 10 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=95.26 E-value=0.013 Score=31.91 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=45.7 Q ss_pred CCCHHHHHHHHHHC------CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 99989999999858------898899999998299-9999999999999941798647986 Q gi|254780305|r 31 YTQCERVRIKQSLN------NVPIHIDDIIHHTGI-EAPVVYLVLLELDLAGRLCHHPEGK 84 (95) Q Consensus 31 ~~~~~~~~Il~~L~------~~p~~iD~l~~~tgl-~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95) .+++-+++||+.+. ..|-++.+|++.+|+ +.+.|...|-.||-+|+|.+.+|.. T Consensus 2 ~LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~~~ 62 (71) T d1jhfa1 2 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGAS 62 (71) T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSS T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCC T ss_conf 8799999999999999998288988999997729999999999999999975930689998 No 11 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=94.90 E-value=0.027 Score=30.19 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=46.8 Q ss_pred CHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEE Q ss_conf 9899999998588-9889999999829999999999999999417-986479868981 Q gi|254780305|r 33 QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKVSLT 88 (95) Q Consensus 33 ~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v~l~ 88 (95) +.-+.+|+..|.. ..++.++|++..|++..+|...+-.||-.|+ |...+|.-|+|. T Consensus 4 ~~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~g~GY~L~ 61 (63) T d1biaa1 4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (63) T ss_dssp CHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEC T ss_conf 4799999999997895879999999893999999999999987993797079838819 No 12 >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Probab=94.68 E-value=0.012 Score=32.08 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=49.9 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE Q ss_conf 99899999998588988999999982999999999999999941798647986---8981 Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95) Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95) .++.+-+|+..|...+..+-+|+...|++.+.++-.|-.|+-+|.|...--|+ |++. T Consensus 16 ~d~~Rl~Il~~L~~~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~ 75 (94) T d1r1ua_ 16 GDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLD 75 (94) T ss_dssp CSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEES T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC T ss_conf 899999999999729956999999988787789999999998895379988789999989 No 13 >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Probab=94.58 E-value=0.019 Score=31.01 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=48.8 Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEEE Q ss_conf 989999999858-8988999999982999999999999999941798647986---8981 Q gi|254780305|r 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK---VSLT 88 (95) Q Consensus 33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~---v~l~ 88 (95) ++.+.+|+..|. ..+..+.+|++.+|++.+.++-.|-.|+-+|+|.+.--|+ |++. T Consensus 30 dp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~ 89 (108) T d1u2wa1 30 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLG 89 (108) T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEES T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEEC T ss_conf 999999999998689914999998885572579999999998894589988888999988 No 14 >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=93.33 E-value=0.02 Score=30.95 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=44.4 Q ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 989999999858-8988999999982999999999999999941798647 Q gi|254780305|r 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 33 ~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95) ++.+.+|+..|. .++.++.+|++..+++.+.++..|-.||=+|+|.+.. T Consensus 15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~ 64 (100) T d1ub9a_ 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100) T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred CHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEE T ss_conf 99999999876047990199999998625432309999882310368887 No 15 >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Probab=92.89 E-value=0.058 Score=28.43 Aligned_cols=53 Identities=8% Similarity=0.064 Sum_probs=47.1 Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7999899999998588-9889999999829999999999999999417986479 Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) -..+..+-.||..|+. .++++.+|++..+++.+.|+.++-.||=+|+|.+.+. T Consensus 32 ~~lt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~~ 85 (141) T d1lnwa_ 32 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERN 85 (141) T ss_dssp CCCCHHHHHHHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECC T ss_conf 798999999999999879989999999978457379999999998323011034 No 16 >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Probab=92.49 E-value=0.027 Score=30.24 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=38.7 Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999858898899999998299999999999999994179864 Q gi|254780305|r 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95) Q Consensus 38 ~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95) +|+..+-..|++..+|++.+|++.++|..++-+|+=.|+|... T Consensus 3 ~Il~~i~~~pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~ 45 (62) T d2hoea1 3 RILKRIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 45 (62) T ss_dssp CSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC T ss_conf 9999999789699999999893999999999999988987877 No 17 >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} Probab=92.38 E-value=0.067 Score=28.09 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=40.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999998588988999999982999999999999999941798647 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95) -.|+..|...+..+++|.+..|++...++.-|-+||-.|.|.+.. T Consensus 23 l~Il~~l~~G~~rf~el~~~lgis~~vLs~rL~~L~~~gLv~r~~ 67 (142) T d2f2ea1 23 MLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 67 (142) T ss_dssp HHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEC T ss_conf 999999974997799999774003889999999999710435545 No 18 >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=92.22 E-value=0.068 Score=28.03 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=40.1 Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998588-9889999999829999999999999999417986 Q gi|254780305|r 35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95) .+.+||+.|-. .+++..+|++.+|++.++|..++-+|+=.|+|.. T Consensus 7 N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e 52 (71) T d1z05a1 7 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 52 (71) T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 9999999999859948999999988788789999999998898797 No 19 >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Probab=91.93 E-value=0.047 Score=28.91 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=44.7 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 999999985889889999999829999999999999999417986479868 Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) -+-.|++.|...|.++++|+.++|++...+...|--|.-.|.+++...|.+ T Consensus 28 veL~ifd~L~~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~ 78 (92) T d1qzza1 28 ATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGR 78 (92) T ss_dssp HHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CC T ss_pred HHCCCHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 996834888089999999998878391699999999987798364069873 No 20 >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} Probab=91.88 E-value=0.065 Score=28.16 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=45.4 Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 999899999998588-988999999982----9999999999999999417986479868 Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) ..+..|-.|+.+|-. +|+.+.+|+... +|..++|..+|-.||=+|+|.|...|+- T Consensus 4 ~lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~ 63 (120) T d1okra_ 4 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKI 63 (120) T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTE T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 979999999999985899789999999752128648769999999997898588734882 No 21 >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Probab=91.73 E-value=0.091 Score=27.35 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=46.5 Q ss_pred CCCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 799989999999858--898899999998299999999999999994179864798 Q gi|254780305|r 30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 30 ~~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ...+..+-.||..|. ++++.+.+|+.+.|++.+.++.++-.||=+|+|.+.++. T Consensus 30 ~glt~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~ 85 (145) T d2hr3a1 30 DPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP 85 (145) T ss_dssp CHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-- T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 39899999999999985999799999999798988999999999876986763275 No 22 >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Probab=91.57 E-value=0.1 Score=27.06 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=48.8 Q ss_pred CCCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 6887999899999998588-98899999998299999999999999994179864798 Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 27 ~~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ..+-..+..+-.++..|+. .++...+|+..++++.+.++.++-.||=+|+|.+.+.. T Consensus 27 l~~~~Lt~~q~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~ 84 (138) T d1jgsa_ 27 LSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138) T ss_dssp HTTTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 8786989999999886871809899999999787885799999987307877986316 No 23 >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=91.41 E-value=0.07 Score=27.98 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=44.7 Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9999998588--988999999982999999999999999941798647986898 Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) |++||+.|++ .|+.+.+|+..|+.|-..+...|..|--.++|....-+..+| T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqVpkk~lNqVL~rlkke~kVsl~~patW~l 56 (57) T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSI 56 (57) T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 899999999459834799999997887889999999997555514688750137 No 24 >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Probab=91.18 E-value=0.15 Score=26.26 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=40.5 Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999998588-98899999998299999999999999994179864 Q gi|254780305|r 35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95) Q Consensus 35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95) .+..|++.|-. .+++-.+|++.+|++.++|..++-+|+=.|+|... T Consensus 6 N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70) T d1z6ra1 6 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 52 (70) T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999999499289999999894999999999999988997860 No 25 >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=91.14 E-value=0.13 Score=26.51 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=44.9 Q ss_pred CCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999899999998588---9889999999829999999999999999417986479 Q gi|254780305|r 31 YTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 31 ~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) ..+..+-.||..|.. .++.+.+|++..+++.+.++.++-.||=+|+|.+.+. T Consensus 30 ~Ls~~q~~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~ 84 (125) T d1p4xa2 30 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERS 84 (125) T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEEC T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEC T ss_conf 9999999999999980378836999999978984249999999980057765421 No 26 >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Probab=91.14 E-value=0.058 Score=28.43 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=47.6 Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 7999899999998588-98899999998299999999999999994179864798 Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ...+..+-.||..|.. +++++.+|+..++++.+.++.++-.||=+|+|.+.+.. T Consensus 31 ~glt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~ 85 (143) T d1s3ja_ 31 QGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 85 (143) T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEC T ss_conf 6979999999999997799899999999896988999999999973400131013 No 27 >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Probab=90.92 E-value=0.15 Score=26.13 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=46.0 Q ss_pred CCCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 7999899999998588---98899999998299999999999999994179864798 Q gi|254780305|r 30 EYTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 30 ~~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) -..+..+-.||..|.. .+++..+|++.++++.+.++.++-.||=+|+|.+.... T Consensus 25 ~glt~~q~~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~~ 81 (135) T d3broa1 25 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 81 (135) T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 699999999999999707999999999999896886899999999888888888610 No 28 >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} Probab=90.78 E-value=0.11 Score=26.99 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=40.7 Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999998588988999999982-999999999999999941798647 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95) -.|+..|...+..+++|.+.. |++...++.-|-+||-.|.|.|.. T Consensus 14 l~Il~~L~~g~~rF~el~~~l~gis~~~Ls~rLk~Le~~glv~r~~ 59 (95) T d2hzta1 14 CVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 59 (95) T ss_dssp HHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEE T ss_conf 9999999749997999997732677658999999999968773000 No 29 >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Probab=90.74 E-value=0.096 Score=27.24 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=49.0 Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 887999899999998588-98899999998299999999999999994179864798 Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) .+-..+..+-.||..|+. +++++.+|++.++++.+.++.++-.||=+|+|.+.+.- T Consensus 35 k~~~Lt~~q~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~ 91 (162) T d2fxaa1 35 KPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 91 (162) T ss_dssp GGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC- T ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCC T ss_conf 425999899999965211899189999999769940319989999977772342056 No 30 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=90.14 E-value=0.14 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=40.1 Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999985889-8899999998299999999999999994179864 Q gi|254780305|r 35 ERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95) Q Consensus 35 ~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95) -..+|+..|..+ .++..+|++++|++.+.|..-+=.|+=.|.|.+. T Consensus 4 ~D~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~~ 50 (60) T d1i1ga1 4 RDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 50 (60) T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999988499999999999892999999999999988975768 No 31 >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Probab=89.91 E-value=0.13 Score=26.57 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=46.3 Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999899999998588-9889999999829999999999999999417986479 Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) ..+..+-.||..|.. .++.+.+|++..+++.+.++.++-.||=+|+|.+.+. T Consensus 27 glt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~ 79 (139) T d2a61a1 27 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPD 79 (139) T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEC T ss_conf 97999999999999769989999999839881442699999984572566321 No 32 >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=89.65 E-value=0.2 Score=25.55 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=41.4 Q ss_pred CHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 98999999985889-8899999998299999999999999994179864 Q gi|254780305|r 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95) Q Consensus 33 ~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95) |.-..+|+..|..+ .+++.+|++++|++.+.|..-+-.|+=.|.|.+. T Consensus 2 D~~D~~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~ 50 (60) T d2cyya1 2 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 50 (60) T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 8899999999998289999999999893999999999999988974757 No 33 >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Probab=89.46 E-value=0.19 Score=25.65 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=47.8 Q ss_pred CCCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 6887999899999998588--98899999998299999999999999994179864798 Q gi|254780305|r 27 HYPEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 27 ~~p~~~~~~~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ..+-..+..+-.+|..|.. .++...+|++..+++.+.++.++-.||=+|+|.+.+.. T Consensus 24 l~~~glt~~~~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~~~ 82 (140) T d3deua1 24 LKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA 82 (140) T ss_dssp TTTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--- T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC T ss_conf 87769799999999999874999569999999787776788999999708977751667 No 34 >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Probab=89.41 E-value=0.18 Score=25.76 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=40.8 Q ss_pred CHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 98999999985889-889999999829999999999999999417986 Q gi|254780305|r 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 33 ~~~~~~Il~~L~~~-p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95) |.-..+|+..|..+ -.++.+|++++|++.++|..-+-.||=+|.|.+ T Consensus 4 D~~D~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~ 51 (63) T d2cg4a1 4 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 51 (63) T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 889999999999838999999999989399999999999998898576 No 35 >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Probab=89.12 E-value=0.24 Score=25.04 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=41.1 Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99899999998588-9889999999829999999999999999417986 Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95) .|.-..+|+..|.. ..++..+|++.+|++.++|..-+-.||=.|.|.+ T Consensus 3 lD~~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~ 51 (63) T d2cfxa1 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (63) T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE T ss_conf 7899999999999839999999999989687899999999998898565 No 36 >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} Probab=89.04 E-value=0.12 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=39.9 Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999998588988999999982-999999999999999941798647 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95) -.|+..|..++..+++|.+.. |++...++..|-+||-.|.|.|.. T Consensus 22 ~~Il~~L~~g~~RF~el~~~l~gIS~~~Ls~rLk~L~~~glv~R~~ 67 (108) T d1z7ua1 22 LSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 67 (108) T ss_dssp HHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEC T ss_conf 9999999759988999997773777668999999999789503431 No 37 >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Probab=89.01 E-value=0.14 Score=26.29 Aligned_cols=55 Identities=5% Similarity=0.004 Sum_probs=48.8 Q ss_pred CCCCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 887999899999998588-9889999999829999999999999999417986479 Q gi|254780305|r 28 YPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 28 ~p~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) .+-..+..+-.||..++. +++..-+|++..+++.+.++.++-.||=+|+|.+.++ T Consensus 27 ~~~gLt~~q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~~~ 82 (137) T d1z91a1 27 DKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRS 82 (137) T ss_dssp TTTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBC T ss_pred HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 78496999999999987589998999999979688889799999965005477216 No 38 >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=88.96 E-value=0.16 Score=26.11 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=42.6 Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9999858-8988999999982999999999999999941798647986898 Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) .|+.... ..++..-+|++..|++.+.|+.++-.|+-+|+|...|-|.+.| T Consensus 11 ~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~Y~~i~L 61 (61) T d2ev0a1 11 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVL 61 (61) T ss_dssp HHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----CCEE T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEC T ss_conf 999998358975099999995899515999999998889977706777569 No 39 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=88.86 E-value=0.3 Score=24.54 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=43.0 Q ss_pred HHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9999858-8988999999982999999999999999941798647986898 Q gi|254780305|r 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 38 ~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) .|+.... ..++.+-+|+++.|++.+.|..++=.|+=+|+|..-+.+.|.| T Consensus 13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~y~~i~L 63 (63) T d2isya1 13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLEL 63 (63) T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEE T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEC T ss_conf 999998558977099999996899443999999999888988768984149 No 40 >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} Probab=88.61 E-value=0.14 Score=26.36 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=40.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999998588988999999982-999999999999999941798647 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95) -.|+..|...+..+++|.+.. |++...++..|-+||-.|.|.|.. T Consensus 23 l~Il~~L~~g~~rF~el~~~l~gIs~~~Ls~rLkeL~~~glv~r~~ 68 (102) T d2fswa1 23 LLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 68 (102) T ss_dssp HHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECC T ss_conf 9999998369988999976572556468999999999889604324 No 41 >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Probab=88.54 E-value=0.16 Score=25.99 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=47.9 Q ss_pred CCCCCCCHHHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 688799989999999858---89889999999829999999999999999417986479 Q gi|254780305|r 27 HYPEYTQCERVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 27 ~~p~~~~~~~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) ..+-..+..+-.||..|. ..++++-+|+...+++.+.++.++-.||=+|+|.|.+. T Consensus 25 ~~~~~Lt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~ 83 (115) T d1hsja1 25 KKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRS 83 (115) T ss_dssp SSSCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEEC T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 74559999999999999806899948999999978885359999999998687698760 No 42 >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} Probab=88.19 E-value=0.32 Score=24.41 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=39.5 Q ss_pred HHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9998588-98899999998299999999999999994179864798 Q gi|254780305|r 39 IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 39 Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) .|..|++ +.+..-+|+++.+++-..|..+|-.||-+|.+.+..|- T Consensus 7 ~l~~lg~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~gt 52 (59) T d2gxba1 7 FLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT 52 (59) T ss_dssp HHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSS T ss_pred HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCC T ss_conf 9996288520349999999688699999999999975526536899 No 43 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Probab=87.91 E-value=0.16 Score=26.07 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=46.3 Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999899999998588-98899999998299999999999999994179864798 Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ..+..+-.||..|.. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+.. T Consensus 27 glt~~q~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~ 80 (136) T d2fbia1 27 GLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 80 (136) T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 979999999999997699899999999887898899999999988997984557 No 44 >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Probab=87.64 E-value=0.22 Score=25.33 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=46.2 Q ss_pred CCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999899999998588-98899999998299999999999999994179864798 Q gi|254780305|r 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ..+..+-.|+..|+. .++.+-+|++..+++.+.++.++-.||=+|+|.+.+.. T Consensus 29 ~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~ 82 (140) T d2etha1 29 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDP 82 (140) T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECT T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 999999999999998699599999999896987999999999878896663133 No 45 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=87.39 E-value=0.14 Score=26.40 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=37.6 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 988999999982999999999999999941798647986898 Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) .+++.-+|+++++++.+.++.+|-.||-+|+|.|-..|+... T Consensus 20 ~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~ 61 (85) T d3ctaa1 20 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQI 61 (85) T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEE T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 998899999998878878999999999879804312455430 No 46 >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} Probab=87.14 E-value=0.17 Score=25.86 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=41.1 Q ss_pred HHHHHHHCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999998588988999999982-999999999999999941798647 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~~~p 81 (95) -.|+..|...+..+++|.+.. |++...++..|-+||=.|.|.|.. T Consensus 27 l~Il~~L~~g~~RF~el~~~l~gis~~~Ls~rL~~Le~~glv~R~~ 72 (114) T d1yyva1 27 VLILVALRDGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVS 72 (114) T ss_dssp HHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999609999999997740335247999899999988873002 No 47 >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} Probab=87.03 E-value=0.24 Score=25.09 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=41.4 Q ss_pred HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999998588-98899999998299999999999999994179864798 Q gi|254780305|r 37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) .++++.|+. +-++.-+|++..|++-..|...|..|+=+|.|.+.+|. T Consensus 13 k~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~t 60 (70) T d1sfua_ 13 KKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 60 (70) T ss_dssp HHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS T ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC T ss_conf 999974587777049999999598898988999999987985127996 No 48 >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Probab=86.59 E-value=0.29 Score=24.65 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=39.3 Q ss_pred CCHHHHHHHHHHC----CCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH Q ss_conf 9989999999858----8988999999982-999999999999999941798 Q gi|254780305|r 32 TQCERVRIKQSLN----NVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLC 78 (95) Q Consensus 32 ~~~~~~~Il~~L~----~~p~~iD~l~~~t-gl~~~~v~~~LleLEL~G~i~ 78 (95) +++-+++||+.+. .+-+|+++|..+. +++.++|..++=+|.-.|.|- T Consensus 4 Ls~~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IY 55 (69) T d1dpua_ 4 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 55 (69) T ss_dssp SCHHHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEE T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 9899999999998388856838999998816999999999999998378555 No 49 >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} Probab=86.37 E-value=0.41 Score=23.84 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=40.2 Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 988-9999999829999999999999999417986479868981379 Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91 (95) Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~ 91 (95) +.+ +..+|++..+.+...|..+|-.|+-.|+|.+.+|.=+.+..+. T Consensus 20 ~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~ 66 (78) T d3bwga1 20 DKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHK 66 (78) T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCC T ss_conf 99937999999988798999999999998893899718578983598 No 50 >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=86.21 E-value=0.15 Score=26.25 Aligned_cols=53 Identities=6% Similarity=-0.056 Sum_probs=46.4 Q ss_pred CCCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7999899999998588---9889999999829999999999999999417986479 Q gi|254780305|r 30 EYTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 30 ~~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) ...+..+-.||..|.. .++++.+|++..+++.+.++.++-.||=+|+|.+... T Consensus 30 ~~Lt~~q~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~ 85 (125) T d1p4xa1 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRS 85 (125) T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEEC T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECC T ss_conf 49988999999999984369867999999968882439999999998898102123 No 51 >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Probab=85.62 E-value=0.36 Score=24.13 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=44.6 Q ss_pred CCCCHHHHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 799989999999858--89889999999829999999999999999417986479 Q gi|254780305|r 30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 30 ~~~~~~~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) -..+..+-.||..|. .+++.+.+|++..+++.+.++.++-.||=+|+|.+.+. T Consensus 24 ~glt~~q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~ 78 (137) T d2fbha1 24 LGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAV 78 (137) T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 5979999999999987699976999999989789899999999998577200577 No 52 >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} Probab=84.71 E-value=0.17 Score=25.89 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=42.2 Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999998588-98899999998299999-999999999994179864798 Q gi|254780305|r 35 ERVRIKQSLNN-VPIHIDDIIHHTGIEAP-VVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 35 ~~~~Il~~L~~-~p~~iD~l~~~tgl~~~-~v~~~LleLEL~G~i~~~pGg 83 (95) -+.+|++.|.. .|...=.|+...|++-+ +|..+|-.||=+|.|.+..+. T Consensus 6 ~eekI~~~L~~~g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~~t 56 (73) T d1xmka1 6 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTT 56 (73) T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSS T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCC T ss_conf 999999999975984399999994997078875999999987780127998 No 53 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Probab=84.31 E-value=0.25 Score=24.99 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=45.8 Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7999899999998588-9889999999829999999999999999417986479 Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) -..+..+-.||..|+. .++...+|+...+++.+.++.++-.||=+|+|.+.+. T Consensus 25 ~~lt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~ 78 (144) T d1lj9a_ 25 LSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQED 78 (144) T ss_dssp GTCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 698999999999998289989999999878247169999999996032010578 No 54 >d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]} Probab=84.16 E-value=0.97 Score=21.80 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=41.0 Q ss_pred CCHHHHHHHHHHC-C--CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9989999999858-8--988999999982-----999999999999999941798647 Q gi|254780305|r 32 TQCERVRIKQSLN-N--VPIHIDDIIHHT-----GIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 32 ~~~~~~~Il~~L~-~--~p~~iD~l~~~t-----gl~~~~v~~~LleLEL~G~i~~~p 81 (95) ....+..|++.|- . .+.++|+|.... .++.++|+..|-.|+=.|+|.+.. T Consensus 14 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~ 71 (134) T d1mzba_ 14 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 71 (134) T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEE T ss_conf 7989999999998489999999999999997388844799999999997413788886 No 55 >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=83.34 E-value=0.49 Score=23.40 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=38.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9889999999829999999999999999417986479868981 Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) +.+...+|++..|++...|..+|-.|+-.|+|.+.+|.-+.++ T Consensus 24 ~~l~~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~V~ 66 (69) T d2hs5a1 24 ARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVR 66 (69) T ss_dssp CEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC T ss_conf 9669999999989798999999999998896899759778964 No 56 >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=82.67 E-value=0.45 Score=23.60 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=45.6 Q ss_pred CCCHHHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999899999998588---98899999998299999999999999994179864798 Q gi|254780305|r 31 YTQCERVRIKQSLNN---VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 31 ~~~~~~~~Il~~L~~---~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ..+..+-.||..+.. +++.+-+|+...+++.+.++.++-.||=+|+|.+.+.. T Consensus 30 ~Ls~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~~~ 85 (115) T d2frha1 30 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE 85 (115) T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECC T ss_conf 98999999999998089999889999999797886899999999846651321013 No 57 >d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]} Probab=82.05 E-value=0.79 Score=22.28 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=45.7 Q ss_pred CCCCCCCCHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 568879998999999985---88988999999982999999999999999941798647 Q gi|254780305|r 26 THYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81 (95) Q Consensus 26 ~~~p~~~~~~~~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~p 81 (95) +..-...+.+|..||+.+ |...+-.-+|..+|+++..++.-+|=.||-++.|.... T Consensus 5 a~k~~~l~~~E~lVY~~I~~ag~~GIW~~dir~ktnL~~~~l~K~LK~Lesk~lIK~Vk 63 (78) T d2dk5a1 5 AGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 63 (78) T ss_dssp CCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEC T ss_conf 78773799899999999997165662499999873999899999999997368715441 No 58 >d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]} Probab=81.83 E-value=0.85 Score=22.12 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHHCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 99899999998588--988999999982----999999999999999941798647986 Q gi|254780305|r 32 TQCERVRIKQSLNN--VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGK 84 (95) Q Consensus 32 ~~~~~~~Il~~L~~--~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~ 84 (95) ++.-|..|+++|=. +|+.+-+|.... ++..++|...|-.|+=+|.|.+...|+ T Consensus 5 L~~~E~~IM~~lW~~g~~~t~~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~~~gr 63 (122) T d2g9wa1 5 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDR 63 (122) T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC--- T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 77999999999984899956999999871247995878999999999789877860698 No 59 >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=81.40 E-value=0.53 Score=23.21 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=39.6 Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 988-99999998299999999999999994179864798689813 Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95) Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95) +.+ +..+|++..+++...|..++-.|+-.|+|.+.+|.=+.+.. T Consensus 25 ~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 69 (74) T d1hw1a1 25 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 69 (74) T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEEECC T ss_conf 998349999999897989999999999988918998084479878 No 60 >d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Probab=80.87 E-value=0.78 Score=22.33 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=44.8 Q ss_pred CCCCHHHHHHHHHHCC-CCCCHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 7999899999998588-98899999998----299999999999999994179864798689 Q gi|254780305|r 30 EYTQCERVRIKQSLNN-VPIHIDDIIHH----TGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95) Q Consensus 30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~----tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95) +..+..|..|+++|=. +|+.+.+|... -++..++|...|-.|+=+|.|.+.-.|+.. T Consensus 5 ~~Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l~~~k~gr~~ 66 (82) T d1p6ra_ 5 PQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVF 66 (82) T ss_dssp CCCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEE T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEE T ss_conf 99999999999999957997899999985023697284799999999988986787059858 No 61 >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=80.58 E-value=0.78 Score=22.33 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=36.7 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 8899999998299999999999999994179864798689813 Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89 (95) Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~ 89 (95) ++.-++|+...|.+...|+.+|-+|+=+|+|. .-+|.+.+.. T Consensus 27 ~lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~-~~~~~i~I~d 68 (73) T d1zyba1 27 KVKMDDLARCLDDTRLNISKTLNELQDNGLIE-LHRKEILIPD 68 (73) T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE-EETTEEEESC T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECC T ss_conf 06999999897988999999999999889899-6299999856 No 62 >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=79.63 E-value=1.2 Score=21.35 Aligned_cols=46 Identities=11% Similarity=0.268 Sum_probs=37.6 Q ss_pred HHHHHHHHHH------CCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999985------8898899999998299--99999999999999417986 Q gi|254780305|r 34 CERVRIKQSL------NNVPIHIDDIIHHTGI--EAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 34 ~~~~~Il~~L------~~~p~~iD~l~~~tgl--~~~~v~~~LleLEL~G~i~~ 79 (95) .-++.||+++ ...|++.-+|++..++ +.++|...|-.||=+|.|.+ T Consensus 4 ~Rq~~IL~~Ive~y~~~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~ 57 (87) T d1stza1 4 DRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQ 57 (87) T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEEC T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 899999999999999809846799999870889898999999999998786248 No 63 >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Probab=78.24 E-value=0.44 Score=23.66 Aligned_cols=53 Identities=8% Similarity=0.153 Sum_probs=46.8 Q ss_pred CCCCHHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 799989999999858-89889999999829999999999999999417986479 Q gi|254780305|r 30 EYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 30 ~~~~~~~~~Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) -..+..+-.|+..|. ..++..-+|++.++++.+.++.++-.||=+|+|.+... T Consensus 30 ~glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~ 83 (136) T d2bv6a1 30 YNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERS 83 (136) T ss_dssp HTCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEEC T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 697999999999997289979999999979788379999999997898797434 No 64 >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Probab=77.67 E-value=1 Score=21.64 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=37.2 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9889999999829999999999999999417986479868981 Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) -|.+-.+|+..+|.+...|+.+|-+|+-+|+|....-|++.+. T Consensus 29 ~~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~~~~i~I~ 71 (80) T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIP 71 (80) T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECS T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCEEEEC T ss_conf 3789999999979889999999999998898897899959988 No 65 >d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]} Probab=77.67 E-value=0.77 Score=22.36 Aligned_cols=54 Identities=4% Similarity=0.068 Sum_probs=42.2 Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 99899999998588-988999999982----9999999999999999417986479868 Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) .+..|..|+++|=. +|+.+-+|...+ +|+.++|...|-.|+=+|.|.+.--|+. T Consensus 4 ls~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~Kg~l~~~~~gr~ 62 (122) T d1sd4a_ 4 ISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENI 62 (122) T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTE T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCE T ss_conf 88999999999984799779999998414589958589999999986102035336980 No 66 >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Probab=77.17 E-value=0.53 Score=23.21 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=35.6 Q ss_pred HHHHHHHH--CCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH--CCCCEEEEE Q ss_conf 99999985--8898899999998299999---99999999999417986--479868981 Q gi|254780305|r 36 RVRIKQSL--NNVPIHIDDIIHHTGIEAP---VVYLVLLELDLAGRLCH--HPEGKVSLT 88 (95) Q Consensus 36 ~~~Il~~L--~~~p~~iD~l~~~tgl~~~---~v~~~LleLEL~G~i~~--~pGg~v~l~ 88 (95) +-.|.+.| +..|.++++|+.+++.+.. .+..+|=-|--.|.+.. -.+|+|+++ T Consensus 31 eLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~~~~~Y~lt 90 (101) T d1fp2a1 31 EMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALT 90 (101) T ss_dssp HTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEEC T ss_pred HCCCHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEECC T ss_conf 948688998768999999999874998765158999999997579514432899827348 No 67 >d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]} Probab=77.03 E-value=1 Score=21.75 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=39.8 Q ss_pred HHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999998588-9889999999829999999999999999417986479 Q gi|254780305|r 37 VRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82 (95) Q Consensus 37 ~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pG 82 (95) ..|+..|+. .+-.--||+...|++.-+..--|+-||-.|.|+|-|= T Consensus 3 n~Il~fl~~~~~~~T~EIAea~gvsaYQARyYL~~Lekegki~RsPl 49 (73) T d2htja1 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPL 49 (73) T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 08999988448963789999963389999999999877157014845 No 68 >d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]} Probab=77.00 E-value=1.4 Score=20.91 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=30.8 Q ss_pred CCCCCHHHHHHHHHHCCCCC-CHHHHHHHHCCCHHHHH Q ss_conf 87999899999998588988-99999998299999999 Q gi|254780305|r 29 PEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVY 65 (95) Q Consensus 29 p~~~~~~~~~Il~~L~~~p~-~iD~l~~~tgl~~~~v~ 65 (95) .-|.+.-+.+|++.|...|. .-|+|+++.|+++++|- T Consensus 176 dvpidekeerileilrenpwtphdeiarrlglsvseve 213 (291) T d2csba5 176 DVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE 213 (291) T ss_dssp TCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC T ss_conf 79976478999999970899972899998487532313 No 69 >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Probab=76.22 E-value=0.63 Score=22.84 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=47.7 Q ss_pred CCCCCCCCCHHHHHHHHHH---CC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 3568879998999999985---88-98899999998299999999999999994179864798 Q gi|254780305|r 25 ITHYPEYTQCERVRIKQSL---NN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95) Q Consensus 25 ~~~~p~~~~~~~~~Il~~L---~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95) ....+...+..+-.||..| +. ..++.-+|++..+++.+.++.++-.||=+|+|.+.+.. T Consensus 53 ~~l~~~gLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~~ 115 (172) T d2fbka1 53 RTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 115 (172) T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-- T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC T ss_conf 999886979999999999985189999689999999786785799999999868984441355 No 70 >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Probab=76.08 E-value=0.95 Score=21.87 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=41.2 Q ss_pred HHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--CCCCEEEEECC Q ss_conf 999985---889889999999829999999999999999417986--47986898137 Q gi|254780305|r 38 RIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH--HPEGKVSLTMH 90 (95) Q Consensus 38 ~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~--~pGg~v~l~~~ 90 (95) +++-.| ...+++.++|+++.+++..-+..+|-.|-=+|.|.. .+||| .|+.. T Consensus 11 ~~L~~la~~~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~-~L~~~ 67 (138) T d1ylfa1 11 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGA-GLLKD 67 (138) T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCE-EESSC T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-EECCC T ss_conf 9999998589986849999999796999999999999888986853499983-31478 No 71 >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=76.08 E-value=1.3 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=35.0 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 88999999982999999999999999941798647986898 Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) |++-++|+..+|.+...|+.+|-+|+=.|+|. ..|+++.+ T Consensus 29 ~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~-~~~~~I~I 68 (69) T d1i5za1 29 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS-AHGKTIVV 68 (69) T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEE T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEE T ss_conf 78999999897997999999999999889889-76999997 No 72 >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} Probab=74.40 E-value=1.7 Score=20.43 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=27.0 Q ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 99998588-9889999999829999999999999 Q gi|254780305|r 38 RIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 38 ~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95) .+|..|.. .|+++..|+..+|++..+|..+|-. T Consensus 6 ~LLr~LA~G~PVs~~~LA~alg~~~~eV~~aL~~ 39 (60) T d1s6la1 6 PLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQ 39 (60) T ss_dssp HHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999994799858999998958999999999985 No 73 >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} Probab=74.22 E-value=1.6 Score=20.65 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=40.2 Q ss_pred HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEC Q ss_conf 999858-898899999998299999999999999994179864--798689813 Q gi|254780305|r 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PEGKVSLTM 89 (95) Q Consensus 39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~--pGg~v~l~~ 89 (95) +|..|. .++++.++|++..+.+..-|..+|-.|.=+|.|... +||.| |+. T Consensus 9 ~L~~la~~~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGy-Lar 61 (127) T d1xd7a_ 9 ILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGAS-LKK 61 (127) T ss_dssp HHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCE-ESS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCC T ss_conf 99998649998999999886959999999999999807651268999851-068 No 74 >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=73.28 E-value=1.2 Score=21.22 Aligned_cols=42 Identities=5% Similarity=0.077 Sum_probs=36.0 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9889999999829999999999999999417986479868981 Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) -|.+-.+|+..+|.+...|+.+|-+|+=.|+|.. .++.+.+. T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~-~~~~i~I~ 69 (81) T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL-DGKRIKII 69 (81) T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE-ETTEEEES T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC T ss_conf 0689999999979989999999999998997896-39999983 No 75 >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} Probab=73.27 E-value=1.6 Score=20.65 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=33.4 Q ss_pred HHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999858---8988999999982999999999999999941798 Q gi|254780305|r 37 VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78 (95) Q Consensus 37 ~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~ 78 (95) +.++++-. ..|.++-.|+.++++|.+.+...|.+|+=+|.+. T Consensus 11 ~~L~eA~~e~~g~~WSLaklsKra~~PMS~LRR~LTqL~~aGl~~ 55 (81) T d2obpa1 11 LVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 55 (81) T ss_dssp HHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE T ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE T ss_conf 999998316899976388988661796899999999985068455 No 76 >d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=71.74 E-value=1.2 Score=21.24 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=35.7 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9889999999829999999999999999417986479868981 Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) -+++-++|+..+|.+...|+.+|-+|+-.|+|.. -+|.+.+. T Consensus 28 i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~-~~~~i~I~ 69 (82) T d2zcwa1 28 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS-GYGKIQLL 69 (82) T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEES T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC T ss_conf 0589999999989889999999999998998896-49999984 No 77 >d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]} Probab=71.21 E-value=2 Score=20.15 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=48.6 Q ss_pred CCCHHHHHHHHHH--------CCCCCCHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9998999999985--------889889999999829----------99999999999999941798647986898 Q gi|254780305|r 31 YTQCERVRIKQSL--------NNVPIHIDDIIHHTG----------IEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 31 ~~~~~~~~Il~~L--------~~~p~~iD~l~~~tg----------l~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) ..++.+.+|+.+| ...|.+++.|...|+ ++-++|..+|-+|.-+|.|....|+++.- T Consensus 6 ~Ls~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~E~eV~~ald~L~~~~Lv~~~~gsRv~k 80 (84) T d3bz6a1 6 QLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSRADR 80 (84) T ss_dssp CBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECCSSCCE T ss_pred CCCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 058889778875200023587767626999998871646667650589999999999998788868630677644 No 78 >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Probab=69.99 E-value=1.6 Score=20.66 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=34.9 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 988999999982999999999999999941798647986898 Q gi|254780305|r 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87 (95) Q Consensus 46 ~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l 87 (95) -|++-++|+..+|.+...|+.+|-+|+=.|+|.. -+|.+.+ T Consensus 29 ~~lt~~elA~~~g~sretvsr~l~~l~~~glI~~-~~~~i~I 69 (80) T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK-KKNKIIV 69 (80) T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----CEE T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCEEEE T ss_conf 3799999999988778899999999998996996-3999998 No 79 >d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=64.97 E-value=4.2 Score=18.40 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=44.5 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 998999999985889889999999829999999999999999417986479868981 Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) ..+-+++||..++ ...+-|+|-+..+|+-.++--.|-.||--=.|++..|++ ..+ T Consensus 29 ~nPvRrkiLrmi~-kgrsedEIm~~l~LSkkqldYHLk~LE~GfciErvge~w-~~T 83 (89) T d1y0ua_ 29 TNPVRRKILRMLD-KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERW-VVT 83 (89) T ss_dssp SCHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE-EEC T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCE-EEC T ss_conf 4579999999997-347899999995657999999999987461268618823-553 No 80 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=63.79 E-value=3 Score=19.20 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.7 Q ss_pred CCHHHHHHHHCCCHHHHHHHHH Q ss_conf 8999999982999999999999 Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95) Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95) +.|.+|++.+|++.++|+.+|- T Consensus 2 vTi~dvA~~agvS~~TVSr~Ln 23 (57) T d2hsga1 2 VTIYDVAREASVSMATVSRVVN 23 (57) T ss_dssp CCHHHHHHHTTSCHHHHHHHHT T ss_pred CCHHHHHHHHCCCHHHHHHHHC T ss_conf 6999999898959999999968 No 81 >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=62.99 E-value=4.5 Score=18.19 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=41.8 Q ss_pred HHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 9999985---8898899999998299999999999999994179864798689 Q gi|254780305|r 37 VRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86 (95) Q Consensus 37 ~~Il~~L---~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~ 86 (95) ++|..++ |..|-.+-+|+..+|++...+-..|--|-=.|.+.+...++|- T Consensus 10 ~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~~d~yf 62 (64) T d1lvaa3 10 KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW 62 (64) T ss_dssp HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC T ss_conf 99999999869999959999989199999999999999978977985365401 No 82 >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Probab=62.66 E-value=4.6 Score=18.16 Aligned_cols=39 Identities=5% Similarity=-0.124 Sum_probs=33.2 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 998999999985889889999999829999999999999 Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95) +.+.++.|+..--.+-.++++|++..|++.+.|...+.. T Consensus 19 Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~r 57 (68) T d1or7a1 19 LPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFR 57 (68) T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999999990989999999989499999999999 No 83 >d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=62.06 E-value=4.1 Score=18.46 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=37.9 Q ss_pred CCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 988999999982--999999999999999941798647986898137998 Q gi|254780305|r 46 VPIHIDDIIHHT--GIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93 (95) Q Consensus 46 ~p~~iD~l~~~t--gl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~~~~ 93 (95) .-+..++|..+. +++.....++|-.|.=+|.| ..-|++|+|..|-|+ T Consensus 25 ~G~~keeLr~~l~~~~~~~~f~~lL~~l~~~g~l-~~~g~~v~L~~f~ps 73 (73) T d2v9va2 25 PGLAREELRSRYFSRLPARVYQALLEEWSREGRL-QLAANTVALAGFTPS 73 (73) T ss_dssp SCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSE-EECSSEEEETTCCCC T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH-HEECCEEECCCCCCC T ss_conf 2879999997712349999999999999978970-000898788898999 No 84 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=61.84 E-value=3.1 Score=19.11 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 88999999982999999999999 Q gi|254780305|r 47 PIHIDDIIHHTGIEAPVVYLVLL 69 (95) Q Consensus 47 p~~iD~l~~~tgl~~~~v~~~Ll 69 (95) ++.+.+|++.+|++.++|+.+|- T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l~ 24 (59) T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVVN 24 (59) T ss_dssp CCCHHHHHHTTTSCHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHC T ss_conf 88899999897979999999977 No 85 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=61.83 E-value=4.8 Score=18.07 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=26.0 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) ..++..-|+..+++++|++++|++.+.++. T Consensus 21 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (81) T d1rkta1 21 KTVFKRKGFELTTMKDVVEESGFSRGGVYL 50 (81) T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998592517799999986949889988 No 86 >d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Probab=60.82 E-value=3.2 Score=18.99 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=34.6 Q ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88999999982999-9999999999999417986479868981 Q gi|254780305|r 47 PIHIDDIIHHTGIE-APVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 47 p~~iD~l~~~tgl~-~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) +++-++|+...|++ ..+|+.+|-+|+=.|+|... ++++.+. T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~-~~~i~I~ 72 (100) T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK-NSCFYVQ 72 (100) T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE-TTEEEES T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEC-CCEEEEE T ss_conf 66999999883874488999999999879788975-9999992 No 87 >d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=60.63 E-value=5 Score=17.95 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=27.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|+.-+++++|++++|++.+.++.. T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~ 42 (68) T d2d6ya1 12 VAEFARHGIAGARIDRIAAEARANKQLIYAY 42 (68) T ss_dssp HHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999985925067999998878466289888 No 88 >d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase MYST1 {Human (Homo sapiens) [TaxId: 9606]} Probab=59.99 E-value=4.1 Score=18.43 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=35.6 Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9999998588--9889999999829999999999999999417986479868 Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) ...|++.|-. +.++|++|++.|++....|..+|-.| |.+....|+.+ T Consensus 190 ~~~il~~l~~~~~~isI~~is~~T~i~~~Dii~tL~~l---~~l~~~~g~~~ 238 (271) T d2giva1 190 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL---NMVKYWKGQHV 238 (271) T ss_dssp HHHHHHHHC------CHHHHHHHHCBCHHHHHHHHHHT---TCEEEETTEEE T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHC---CCEEEECCEEE T ss_conf 99999999736997209999998699889999999977---97898698089 No 89 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=58.52 E-value=5.5 Score=17.75 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=26.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|++.+++++|++++|++.+.++. T Consensus 14 ~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~ 43 (79) T d2fbqa1 14 EQLFAEKGFAETSLRLITSKAGVNLAAVNY 43 (79) T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998693504099999998828557878 No 90 >d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]} Probab=57.63 E-value=5.7 Score=17.66 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=27.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|+.-+++++|++++|++.+.++-. T Consensus 10 ~~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~ 40 (69) T d2i10a1 10 MELFWRQGYEGTSITDLTKALGINPPSLYAA 40 (69) T ss_dssp HHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999987906277999999868786299888 No 91 >d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=57.41 E-value=5.7 Score=17.64 Aligned_cols=40 Identities=5% Similarity=-0.095 Sum_probs=34.4 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 9998999999985889889999999829999999999999 Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95) .+++.++.|+..--....+..+|++..|++.++|...+.. T Consensus 21 ~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~r 60 (71) T d1rp3a2 21 KLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAK 60 (71) T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 7999999999999868489999999979899999999999 No 92 >d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=56.81 E-value=2.9 Score=19.24 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.4 Q ss_pred CCHHHHHHHHCCCHHHHHHHHH Q ss_conf 8999999982999999999999 Q gi|254780305|r 48 IHIDDIIHHTGIEAPVVYLVLL 69 (95) Q Consensus 48 ~~iD~l~~~tgl~~~~v~~~Ll 69 (95) +.+.+|++.+|++.++|+.+|- T Consensus 1 vTl~diA~~agvS~sTVSrvLn 22 (59) T d1uxda_ 1 MKLDEIARLAGVSRTTASYVIN 22 (59) T ss_dssp CCHHHHHHHHTSCTTHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHC T ss_conf 9799999997969999999984 No 93 >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} Probab=53.45 E-value=0.94 Score=21.88 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=39.4 Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 988-999999982999999999999999941798647986898137 Q gi|254780305|r 46 VPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90 (95) Q Consensus 46 ~p~-~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~~~ 90 (95) +.+ ++.+|++..|++..+|..++-.|+-.|+|...+|.-+.++.. T Consensus 31 ~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~ 76 (100) T d1v4ra1 31 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN 76 (100) T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCC T ss_conf 9883699999998879899999999999889689964877897789 No 94 >d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=52.56 E-value=6.9 Score=17.19 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=26.9 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|++-+++++|++.+|++.+.++.. T Consensus 14 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~ 44 (72) T d1pb6a1 14 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 44 (72) T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999985925067999999869786799988 No 95 >d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=51.89 E-value=5.9 Score=17.58 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.6 Q ss_pred CHHHHHHHHCCCHHHHHHHHH Q ss_conf 999999982999999999999 Q gi|254780305|r 49 HIDDIIHHTGIEAPVVYLVLL 69 (95) Q Consensus 49 ~iD~l~~~tgl~~~~v~~~Ll 69 (95) .|.+|++.+|++.++|+.+|- T Consensus 2 Ti~dvA~~agVS~sTVSr~ln 22 (57) T d1qpza1 2 TIKDVAKRANVSTTTVSHVIN 22 (57) T ss_dssp CHHHHHHHHTSCHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHC T ss_conf 899999998959999999977 No 96 >d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Probab=51.60 E-value=7.2 Score=17.11 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=32.7 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 998999999985889889999999829999999999999 Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95) +.+.++.|+..--++-.+..+|+..+|++.+.|...|.. T Consensus 17 Lp~~qR~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~R 55 (106) T d1s7oa_ 17 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKR 55 (106) T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999998989991999999999989699999999999 No 97 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=51.23 E-value=7.3 Score=17.07 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) ..++..-|++-+++++|+.++|++.+.++- T Consensus 14 ~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~ 43 (74) T d2g7sa1 14 RTLIIRGGYNSFSYADISQVVGIRNASIHH 43 (74) T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH T ss_conf 999998591506799999987818416988 No 98 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=49.76 E-value=7.7 Score=16.94 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=26.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+.-+++++|++.+|++.+.++. T Consensus 15 ~~l~~~~G~~~~si~~Ia~~agvs~~~~y~ 44 (71) T d1ui5a1 15 ADLFDRRGYESTTLSEIVAHAGVTKGALYF 44 (71) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998594626799999987948769998 No 99 >d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]} Probab=49.38 E-value=7.8 Score=16.91 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=35.1 Q ss_pred HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 999858-898899999998299999999999999994179864 Q gi|254780305|r 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80 (95) Q Consensus 39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~ 80 (95) |-+++- ..-...++|.+....|..-|-++|-.|+..|+|+|. T Consensus 7 vRD~iAL~G~~da~qlS~qL~~P~Plv~AMLerL~aMGK~eri 49 (78) T d1xn7a_ 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78) T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEC T ss_conf 9999997171339999888748847999999999972020131 No 100 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=49.34 E-value=7.8 Score=16.91 Aligned_cols=30 Identities=10% Similarity=0.379 Sum_probs=26.1 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+..+++++|++++|++.+.++. T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~ 46 (78) T d2o7ta1 17 CNLYRTHHHDSLTMENIAEQAGVGVATLYR 46 (78) T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998491406799999883998879999 No 101 >d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]} Probab=47.30 E-value=8.5 Score=16.73 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.7 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) ..++..-|+.-+++++|++.+|++.+.++. T Consensus 10 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~ 39 (70) T d2gena1 10 LACFSEHGVDATTIEMIRDRSGASIGSLYH 39 (70) T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998592408799999987958779998 No 102 >d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]} Probab=47.02 E-value=8.6 Score=16.70 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=26.7 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|++.+++++|+.++|++.+.++.. T Consensus 14 ~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~ 44 (73) T d2fx0a1 14 KKKFGERGYEGTSIQEIAKEAKVNVAMASYY 44 (73) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999986935176999999878486499988 No 103 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=46.49 E-value=8.7 Score=16.65 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=26.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) ..++..-|..-+++++|++.+|++.+.++- T Consensus 11 ~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~ 40 (71) T d1jt6a1 11 KELFIKNGYNATTTGEIVKLSESSKGNLYY 40 (71) T ss_dssp HHHHHHHCTTTCCHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998591406799999987858759988 No 104 >d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]} Probab=46.37 E-value=5.6 Score=17.72 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=37.6 Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998588988999999982--------9999999999999999417986 Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~ 79 (95) +-.||..|...|.|--+|.+.. +++.+.++.+|-.||=+|+|.. T Consensus 9 ~~~IL~lL~~~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~GlI~~ 60 (103) T d1xmaa_ 9 DTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKS 60 (103) T ss_dssp HHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCCCEEE T ss_conf 9999999861894499999999997098535897765999999998899478 No 105 >d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Probab=46.25 E-value=8.8 Score=16.63 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=33.5 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999998588988999999982999999999999999941798 Q gi|254780305|r 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78 (95) Q Consensus 35 ~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~ 78 (95) |++.-|..|-..-.+.++|+++.|.+.+.|...|--|.|.-.|+ T Consensus 7 EeA~a~~~L~e~g~t~~~iA~~~Gks~~~V~~~LrLl~L~~~v~ 50 (93) T d1vz0a1 7 EEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQLPPEAL 50 (93) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999998499999999998514699999998999899999 No 106 >d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]} Probab=46.06 E-value=8.9 Score=16.62 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=36.0 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9998999999985889889999999829999999999999999417986479868 Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) |.++ .+|-++++.+ .|+++++++|++..++...|-+.==+=+=+..|+|.+ T Consensus 58 pIs~--~ql~~~lG~d--~l~~lA~q~Gl~~~~~~~~LA~~LP~~Vd~lTP~G~l 108 (129) T d1z67a1 58 SVSG--EQLESALGTN--AVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEV 108 (129) T ss_dssp CCCH--HHHHHHHCHH--HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTSCC T ss_pred CCCH--HHHHHHHCHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9799--9999884979--9999999989199999999999967998643979989 No 107 >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=45.92 E-value=8.9 Score=16.60 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=35.5 Q ss_pred HHHHHHH--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999985--88988999999982999999999999999941798 Q gi|254780305|r 37 VRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78 (95) Q Consensus 37 ~~Il~~L--~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~ 78 (95) .+|++.| ..+-++=++|+..+|+.++.|-.+|..|-=.|.+. T Consensus 21 ~~v~~~L~~~~~evtDe~iA~~tgi~in~VRk~Ly~L~~~~L~~ 64 (88) T d1q1ha_ 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVS 64 (88) T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCE T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE T ss_conf 99999988636767899999996996999999999998689668 No 108 >d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]} Probab=45.75 E-value=9 Score=16.59 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=26.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+..+++++|++.+|++.+.++. T Consensus 14 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 43 (74) T d1v7ba1 14 IDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (74) T ss_dssp HHHHHHSCSTTCCHHHHHHHHCSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHH T ss_conf 999998595635799999884969223855 No 109 >d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]} Probab=45.55 E-value=9 Score=16.57 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.9 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 99999985889889999999829999999999999 Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95) ..++...+|-+| ++++|+..+|++..+|..+|-. T Consensus 21 ~~~l~q~lgReP-T~~EiA~~l~~~~e~V~~~l~a 54 (57) T d1l0oc_ 21 KDELSKTRGRAP-TVTEIADHLGISPEDVVLAQEA 54 (57) T ss_dssp HHHHHHHHTSCC-BHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHCCCCC-CHHHHHHHHCCCHHHHHHHHHH T ss_conf 999998729998-9999999979399999999998 No 110 >d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3 {Human (Homo sapiens) [TaxId: 9606]} Probab=45.35 E-value=7 Score=17.17 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=34.0 Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 999999858---89889999999829999999999999999417986479868 Q gi|254780305|r 36 RVRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 36 ~~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) ...|++.|- ...++|++|++.|++....|..+|-.|.+ +....|+++ T Consensus 190 ~~~i~~~L~~~~~~~~si~dis~~T~i~~~Dii~tL~~l~~---l~~~~~~~~ 239 (270) T d2ozua1 190 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRM---LDFRSDQFV 239 (270) T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHTTC---C-------- T ss_pred HHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHCCC---EEEECCEEE T ss_conf 99999999847999466999999869988899999997798---899899489 No 111 >d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=44.93 E-value=9.3 Score=16.52 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=26.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|++-+++++|++.+|++.+.++- T Consensus 11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~ 40 (69) T d2np5a1 11 FDVAAESGLEGASVREVAKRAGVSIGAVQH 40 (69) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998491406799999883988879988 No 112 >d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]} Probab=44.41 E-value=9.4 Score=16.47 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=26.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|.+-+++++|++++|++.+.++.. T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~ 44 (69) T d2fq4a1 14 YELLLESGFKAVTVDKIAERAKVSKATIYKW 44 (69) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999983924077999999978588799999 No 113 >d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=43.36 E-value=9.8 Score=16.38 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+.-+++++|++++|++.+.++- T Consensus 13 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 42 (73) T d1t56a1 13 ENLLEDRPLADISVDDLAKGAGISRPTFYF 42 (73) T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999997591507799999986988889988 No 114 >d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]} Probab=42.94 E-value=10 Score=16.34 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) ..++..-|++-+++++|++++|++.+.++. T Consensus 14 ~~l~~~~g~~~~si~~ia~~~gvs~~~~y~ 43 (68) T d2g7la1 14 VALMRAEGLEKVTMRRLAQELDTGPASLYV 43 (68) T ss_dssp HHHHHHHCSSSCCHHHHHHHTTSCHHHHTT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998490307899999997828767628 No 115 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=42.90 E-value=10 Score=16.34 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=35.1 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99989999999858898899999998299999999999999 Q gi|254780305|r 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71 (95) Q Consensus 31 ~~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleL 71 (95) ..|-....|.++|-..-+++-.|++..|++.+++..+|..- T Consensus 6 ~~dWh~adI~AaL~krG~sLa~lsr~~gls~stl~naL~rp 46 (74) T d1nera_ 6 ARDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALERH 46 (74) T ss_dssp SSSCCHHHHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTSS T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 68889999999999968879999999099878999998377 No 116 >d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=42.72 E-value=10 Score=16.32 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|++-+++++|++++|++.+.++. T Consensus 15 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~ 44 (75) T d2hyja1 15 AEIASEEGLDGITIGRLAEELEMSKSGVHK 44 (75) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999997590307699999988909899988 No 117 >d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]} Probab=42.37 E-value=10 Score=16.29 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=32.1 Q ss_pred HCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHH------HHHHHCCCCEEEEECC Q ss_conf 5889889999999829--9999999999999994------1798647986898137 Q gi|254780305|r 43 LNNVPIHIDDIIHHTG--IEAPVVYLVLLELDLA------GRLCHHPEGKVSLTMH 90 (95) Q Consensus 43 L~~~p~~iD~l~~~tg--l~~~~v~~~LleLEL~------G~i~~~pGg~v~l~~~ 90 (95) .+.+|+++++|++..+ .+.+.+..+|-+|.-+ |.-...-||.|++.+. T Consensus 18 as~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~gy~~~tk 73 (85) T d1t6sa1 18 SSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTE 73 (85) T ss_dssp HCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEEC T ss_pred HCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEH T ss_conf 54899899999998755899999999999999998507986799999999899882 No 118 >d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=42.17 E-value=10 Score=16.28 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=26.0 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|++.+++++|++++|++.+.++- T Consensus 15 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~ 44 (75) T d3c07a1 15 MRLFQERGYDRTTMRAIAQEAGVSVGNAYY 44 (75) T ss_dssp HHHHHHTCSTTCCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999997491407799999987939879998 No 119 >d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]} Probab=41.42 E-value=11 Score=16.21 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=26.0 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|++-+++++|+++.|++.+.++. T Consensus 19 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~ 48 (79) T d2oi8a1 19 WEQIATAGASALSLNAIAKRMGMSGPALYR 48 (79) T ss_dssp HHHHHHHCTTSCCHHHHHHHTTCCHHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH T ss_conf 999998690306799999986799774455 No 120 >d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=41.26 E-value=6.4 Score=17.38 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=34.0 Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9999998588--9889999999829999999999999999417986479868 Q gi|254780305|r 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85 (95) Q Consensus 36 ~~~Il~~L~~--~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v 85 (95) ...|++.|-. ..++|++|++.|++....+..+|-.|.+ +...-|+.+ T Consensus 193 ~~~i~~~l~~~~~~isi~~is~~T~i~~~Dii~tL~~l~~---l~~~~g~~~ 241 (273) T d1fy7a_ 193 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNI---LRYYKGQHI 241 (273) T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHHTC---EEEETTEEE T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCC---EEEECCEEE T ss_conf 9999999985799733999998609999999999987798---999799079 No 121 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=41.08 E-value=11 Score=16.18 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=25.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+..+++++|++++|++.+.++- T Consensus 16 ~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~ 45 (77) T d2gfna1 16 LALIAREGISAVTTRAVAEESGWSTGVLNH 45 (77) T ss_dssp HHHHHHHCGGGCCHHHHHHHHSSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998590405799999987888779988 No 122 >d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]} Probab=41.00 E-value=11 Score=16.17 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=26.9 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|+.-+++++|+.++|++.+.++.. T Consensus 16 ~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~ 46 (68) T d2id3a1 16 GDALAADGFDALDLGEIARRAGVGKTTVYRR 46 (68) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999984934077999999978688799999 No 123 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=40.41 E-value=11 Score=16.20 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=25.8 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 99999858898899999998299999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95) .+++..-|++-+++++|++++|++.+.++ T Consensus 13 ~~l~~~~G~~~~t~~~Ia~~agvs~~slY 41 (72) T d1zk8a1 13 AEIADANGVQEVTLASLAQTLGVRSPSLY 41 (72) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH T ss_conf 99999869775669999999597999998 No 124 >d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]} Probab=40.15 E-value=9.8 Score=16.37 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|+.-+++++|++.+|++.+.++-. T Consensus 12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~ 42 (73) T d1sgma1 12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHF 42 (73) T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999984924177999999868887799998 No 125 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=38.66 E-value=12 Score=15.97 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=26.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+.-+++++|++++|++.+.++. T Consensus 11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~~y~ 40 (72) T d1vi0a1 11 VEVIAENGYHQSQVSKIAKQAGVADGTIYL 40 (72) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998590415599999987949879988 No 126 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=36.84 E-value=13 Score=15.80 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=32.6 Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 998999999985889889999999829999999999999 Q gi|254780305|r 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 32 ~~~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~Lle 70 (95) +...++.|+..--++-.+..+|+...|++.+.|...+.. T Consensus 19 Lpe~QR~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~R 57 (106) T d1xsva_ 19 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRR 57 (106) T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999999990875999999989599999999999 No 127 >d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Probab=36.07 E-value=13 Score=15.73 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=40.1 Q ss_pred HHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCC Q ss_conf 999858-898899999998299999999999999994179864---798689813799 Q gi|254780305|r 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGKVSLTMHLP 92 (95) Q Consensus 39 Il~~L~-~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~---pGg~v~l~~~~~ 92 (95) .++.+- ..-+.+|+|+.+-++....+..-+-+||-.|+|.-. -|.++-++---| T Consensus 12 FI~~Ik~~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS~s~~ 69 (72) T d1wi9a_ 12 FINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP 69 (72) T ss_dssp HHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC T ss_pred HHHHHHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCC T ss_conf 9999998787639999988299679999999999987986557858988899737999 No 128 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=34.82 E-value=10 Score=16.30 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=24.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 99999858898899999998299999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95) .+++..-|+.-+++++|++.+|++.+.++ T Consensus 17 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y 45 (76) T d2fd5a1 17 TQALLERGAVEPSVGEVMGAAGLTVGGFY 45 (76) T ss_dssp HHHHHHHTTTSCCHHHHHHHTTCCGGGGG T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHH T ss_conf 99999849130569999998389955004 No 129 >d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Probab=33.93 E-value=12 Score=15.82 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=31.5 Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 89889999999829999999999999999417986 Q gi|254780305|r 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 45 ~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95) +.-++++.|++..+++..++-..|.+|=..|+|.. T Consensus 28 Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~a 62 (84) T d1ufma_ 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNG 62 (84) T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCE T ss_pred HCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE T ss_conf 02566999999978799999999999985695899 No 130 >d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=32.90 E-value=7.9 Score=16.88 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHH Q ss_conf 99999858898899999998299999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~ 65 (95) .+++..-|+.-+++.+|++++|++.+.++ T Consensus 16 ~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y 44 (71) T d2iu5a1 16 KDLMQSNAYHQISVSDIMQTAKIRRQTFY 44 (71) T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCGGGGG T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHH T ss_conf 99999849640779999987571645897 No 131 >d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]} Probab=32.39 E-value=9.6 Score=16.43 Aligned_cols=30 Identities=13% Similarity=0.389 Sum_probs=26.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|.+-+++.+|++++|++.+.++- T Consensus 9 ~~l~~~~G~~~~s~~~Ia~~agvs~~tiy~ 38 (62) T d2vkva1 9 LELGNEVGIEGLTTRKLAQKLGVEQPTLYW 38 (62) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998393517899999880988889998 No 132 >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=31.96 E-value=15 Score=15.36 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=41.1 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9999985889889999999829999999999999999417986479868981 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg~v~l~ 88 (95) ..||..+. +...+-.|...++++-..+...|-.|+=+|.|.. -++.|.++ T Consensus 9 ~DIL~~~~-~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~-~~~~Y~iT 58 (90) T d1r7ja_ 9 QAILEACK-SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-EGKQYMLT 58 (90) T ss_dssp HHHHHHHT-TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC T ss_pred HHHHHHHH-CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEE-CCCEEEEC T ss_conf 99999976-7998207789719999999999999998889663-69878988 No 133 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=31.21 E-value=15 Score=15.39 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=25.3 Q ss_pred HHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999858---8988999999982999999999999 Q gi|254780305|r 37 VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLL 69 (95) Q Consensus 37 ~~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~Ll 69 (95) ++|++.+. .+++.+++|++.+|++...+....- T Consensus 6 ~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk 41 (54) T d1bl0a1 6 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 41 (54) T ss_dssp HHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999986547999999999998939999999999 No 134 >d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Probab=30.83 E-value=16 Score=15.25 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=32.0 Q ss_pred CHHHHHHHHHHCCCC-CCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 989999999858898-89999999829999999999999 Q gi|254780305|r 33 QCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLE 70 (95) Q Consensus 33 ~~~~~~Il~~L~~~p-~~iD~l~~~tgl~~~~v~~~Lle 70 (95) ..+..+|+..+...+ ..--+|++.-|++.++|+.+|=. T Consensus 10 ~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn 48 (66) T d1hlva1 10 FREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (66) T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999998087210999999959976479999987 No 135 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=30.08 E-value=16 Score=15.21 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=23.6 Q ss_pred HHHHH-HCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 99998-588988999999982999999999 Q gi|254780305|r 38 RIKQS-LNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 38 ~Il~~-L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) +++.. -|++-+++++|++++|++.+.++. T Consensus 13 ~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~ 42 (68) T d1z0xa1 13 SLLEKSPTLEQLSMRKVAKQLGVQAPAIYW 42 (68) T ss_dssp HHHHHSCCGGGCCHHHHHHHHTSCHHHHHT T ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999876792316799999987726568999 No 136 >d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=29.23 E-value=17 Score=15.09 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=23.8 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+. +++++|++++|++.+.++. T Consensus 11 ~~l~~~~G~~-~t~~~Ia~~agvs~~~~Y~ 39 (70) T d2hkua1 11 TELFLEHGEG-VPITQICAAAGAHPNQVTY 39 (70) T ss_dssp HHHHHHHCTT-SCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHCCCC-CHHHHHHHHHCCCHHHHHH T ss_conf 9998761357-4499999887888536873 No 137 >d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=28.61 E-value=17 Score=15.03 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=39.6 Q ss_pred CCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99899999998588-9889999999829999999999999999417986 Q gi|254780305|r 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 32 ~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~ 79 (95) .+.-+..||-+... +.+++++|+..+|++...+...|.-|--.+.+.+ T Consensus 193 vs~~Qa~ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll~~ 241 (276) T d1ldja3 193 ASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL 241 (276) T ss_dssp CCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEEC T ss_pred ECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE T ss_conf 7899999998615777657999999879199999999999986897785 No 138 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=27.94 E-value=13 Score=15.65 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=23.6 Q ss_pred HHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9999858---898899999998299999999999 Q gi|254780305|r 38 RIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVL 68 (95) Q Consensus 38 ~Il~~L~---~~p~~iD~l~~~tgl~~~~v~~~L 68 (95) +|.+.+. .+|+++++|++.+|++...+...- T Consensus 7 ~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~F 40 (54) T d1d5ya1 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMF 40 (54) T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999998744899999999999892999999999 No 139 >d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=27.86 E-value=13 Score=15.76 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 9999985889889999999829999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~ 67 (95) .+++..-|+.-+++.+|++++|++.+.++.. T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~ 42 (72) T d2g3ba1 12 ATAIAQRGIRGLRVNDVAEVAGVSPGLLYYH 42 (72) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999983924077999998859697799988 No 140 >d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]} Probab=27.36 E-value=18 Score=14.91 Aligned_cols=38 Identities=3% Similarity=0.020 Sum_probs=29.1 Q ss_pred CCCHHHHHHHHHH----CCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9998999999985----8898899999998299999999999 Q gi|254780305|r 31 YTQCERVRIKQSL----NNVPIHIDDIIHHTGIEAPVVYLVL 68 (95) Q Consensus 31 ~~~~~~~~Il~~L----~~~p~~iD~l~~~tgl~~~~v~~~L 68 (95) .+++-++.|+..- +..|.++++|+...|++...|..+- T Consensus 18 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie 59 (87) T d1ttya_ 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIE 59 (87) T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 399999999999727789996889999999598899999999 No 141 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=26.56 E-value=19 Score=14.86 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=35.2 Q ss_pred CCCHHHHHHHHHHCCC-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 9998999999985889-----889999999829999999999999999417 Q gi|254780305|r 31 YTQCERVRIKQSLNNV-----PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76 (95) Q Consensus 31 ~~~~~~~~Il~~L~~~-----p~~iD~l~~~tgl~~~~v~~~LleLEL~G~ 76 (95) ..++.+++|.+.+-.. -.++.+|++.|+.+.+.|....-.|-.+|+ T Consensus 15 ~Ls~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf 65 (83) T d2o3fa1 15 KLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGF 65 (83) T ss_dssp GSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSH T ss_pred HCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCH T ss_conf 578999999999982999998831999999979899899999999589989 No 142 >d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]} Probab=25.51 E-value=13 Score=15.70 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=25.1 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..=|..-+++++|+..+|++.+.++- T Consensus 13 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~ 42 (75) T d2id6a1 13 VEVFGKKGYDRATTDEIAEKAGVAKGLIFH 42 (75) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCTHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998393516799999884998889988 No 143 >d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]} Probab=25.39 E-value=20 Score=14.70 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=38.3 Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998588988999999982--------9999999999999999417986 Q gi|254780305|r 36 RVRIKQSLNNVPIHIDDIIHHT--------GIEAPVVYLVLLELDLAGRLCH 79 (95) Q Consensus 36 ~~~Il~~L~~~p~~iD~l~~~t--------gl~~~~v~~~LleLEL~G~i~~ 79 (95) .-.||..|...|.|=-+|.+.. +.+.++++..|-.||=+|.|.. T Consensus 3 ~~~iLg~L~~~~~~GYei~~~~~~~~~~~w~~s~g~iY~~L~kLe~~Gli~~ 54 (178) T d1yg2a_ 3 PHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTC 54 (178) T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEE T ss_conf 9999999860899899999999998488417997709999999997898477 No 144 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=24.89 E-value=21 Score=14.65 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=32.5 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 89999999858898899999998299999999999999994179 Q gi|254780305|r 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77 (95) Q Consensus 34 ~~~~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i 77 (95) -|+..-+..|-..-.+.++|+++.|.+.+.|+..|--+.+--.| T Consensus 17 ~e~A~a~~~l~~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v 60 (114) T d1r71a_ 17 REIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKI 60 (114) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHH T ss_conf 99999999998809989999999777299999999996799999 No 145 >d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]} Probab=22.18 E-value=23 Score=14.35 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=28.2 Q ss_pred HHCCCCCC------HHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 85889889------9999998299999999999999994179 Q gi|254780305|r 42 SLNNVPIH------IDDIIHHTGIEAPVVYLVLLELDLAGRL 77 (95) Q Consensus 42 ~L~~~p~~------iD~l~~~tgl~~~~v~~~LleLEL~G~i 77 (95) .=++++.. ++.|+.+||.++.++.+++-+|-.+|+= T Consensus 235 ~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~gf~ 276 (300) T d2duca1 235 KYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMN 276 (300) T ss_dssp HTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCT T ss_pred HCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 569756131067788887877487899999999999864769 No 146 >d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]} Probab=20.97 E-value=9.3 Score=16.52 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=25.4 Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999998588988999999982999999999 Q gi|254780305|r 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66 (95) Q Consensus 37 ~~Il~~L~~~p~~iD~l~~~tgl~~~~v~~ 66 (95) .+++..-|+.-+++++|++.+|++.+.++- T Consensus 6 ~~l~~~~G~~~~s~~~IA~~agvs~~~ly~ 35 (65) T d2np3a1 6 RVCFAERGFDATSLRRIAETAGVDQSLVHH 35 (65) T ss_dssp HHHC-------------------------- T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 999998790407799999987868879998 No 147 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Probab=20.80 E-value=25 Score=14.19 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.5 Q ss_pred CCCCCHHHH-HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 879998999-9999858898899999998299999999999 Q gi|254780305|r 29 PEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68 (95) Q Consensus 29 p~~~~~~~~-~Il~~L~~~p~~iD~l~~~tgl~~~~v~~~L 68 (95) |+-++.++. .+.+.+ ....++-+|++..|++.++++.-| T Consensus 3 ~~~lt~~q~~~a~~l~-~~G~s~~~iA~~~gVSr~TiYry~ 42 (47) T d1ijwc_ 3 PRAINKHEQEQISRLL-EKGHPRQQLAIIFGIGVSTLYRYF 42 (47) T ss_dssp CCSSCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHS T ss_pred CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 8859999999999999-889979999999796999998557 Done!