BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780305|ref|YP_003064718.1| hypothetical protein
CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
(95 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039982|gb|ACT56778.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 95
Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE
Sbjct: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ
Sbjct: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
>gi|163759336|ref|ZP_02166422.1| putative smf protein [Hoeflea phototrophica DFL-43]
gi|162283740|gb|EDQ34025.1| putative smf protein [Hoeflea phototrophica DFL-43]
Length = 383
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+R R+ ++L P +DDII HTG+ A VYLVL+ELDLAGRL HP G VSL P
Sbjct: 326 DRARVIEALGPSPSEVDDIIRHTGVAAATVYLVLIELDLAGRLHRHPGGMVSLAFDDP 383
>gi|218663674|ref|ZP_03519604.1| DNA processing chain A protein [Rhizobium etli IE4771]
Length = 147
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
F SS+++ ++ IT P +R+RI +L P+ IDD+I HTG+ A VYL+LL
Sbjct: 70 FPSSRAEEPAGESRPITMPP--GDSDRMRIIDALGPTPLEIDDVIRHTGLSASAVYLILL 127
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
ELD++GRL H G VSL++
Sbjct: 128 ELDISGRLHRHQGGLVSLSV 147
>gi|86357273|ref|YP_469165.1| DNA processing chain A protein [Rhizobium etli CFN 42]
gi|86281375|gb|ABC90438.1| probable DNA processing chain A protein [Rhizobium etli CFN 42]
Length = 380
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
F SS+++ ++ IT P +R+RI +L P+ IDD+I HTG+ A VYL+LL
Sbjct: 303 FPSSRAEAPAGESKPITMPP--GDSDRMRIIDALGPTPVEIDDVIRHTGLPASAVYLILL 360
Query: 70 ELDLAGRLCHHPEGKVSLT 88
ELD++GRL H G VSL+
Sbjct: 361 ELDISGRLHRHQGGLVSLS 379
>gi|209548899|ref|YP_002280816.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534655|gb|ACI54590.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 380
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI +L P+ IDDII HTG+ A VYL+LLELD+AGRL H G +SL+
Sbjct: 326 DRNRIIDALGPTPVEIDDIIRHTGLSASAVYLILLELDIAGRLHRHQGGLISLS 379
>gi|90417726|ref|ZP_01225638.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
gi|90337398|gb|EAS51049.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
Length = 376
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 39/60 (65%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
E + ER RI ++L PI +DDII HTG V LVLLELDLAGRL HP G VSL +
Sbjct: 317 EPAEGERERIVETLGPTPIDVDDIILHTGARPGAVQLVLLELDLAGRLERHPGGLVSLLL 376
>gi|190891322|ref|YP_001977864.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
gi|190696601|gb|ACE90686.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
Length = 380
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI +L P+ IDDII HTG+ A VYL+LLELD++GRL H G VSL+
Sbjct: 326 DRNRIIDALGPTPVEIDDIIRHTGLSASAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|150396156|ref|YP_001326623.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
gi|150027671|gb|ABR59788.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
Length = 383
Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R R+ ++L P+ IDD+I HTG+ AP ++LVL+ELDLAG+LC H VS+
Sbjct: 327 DRSRVVEALGPTPVEIDDLIRHTGLAAPQIHLVLVELDLAGQLCRHGGNLVSI 379
>gi|15888630|ref|NP_354311.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
gi|15156358|gb|AAK87096.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
Length = 380
Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER I +L P+ IDDII HTG A V+LVLLELD+AGRL H G+VSL
Sbjct: 324 ERSVIASALGPSPVEIDDIIRHTGFSAAAVHLVLLELDIAGRLNRHAGGRVSL 376
>gi|241204123|ref|YP_002975219.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858013|gb|ACS55680.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 380
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI +L P+ IDD+I HTG+ A VYL+LLELD++GRL H G VSL+
Sbjct: 326 DRNRIIDALGPTPVEIDDVIRHTGLSASAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|116251502|ref|YP_767340.1| smf protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115256150|emb|CAK07231.1| putative smf protein [Rhizobium leguminosarum bv. viciae 3841]
Length = 380
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI +L P+ IDD+I HTG+ A VYL+LLELD++GRL H G VSL+
Sbjct: 326 DRNRIIDALGPTPVEIDDVIRHTGLSASAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|222148310|ref|YP_002549267.1| DNA protecting protein DprA [Agrobacterium vitis S4]
gi|221735298|gb|ACM36261.1| DNA protecting protein DprA [Agrobacterium vitis S4]
Length = 383
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ+E+ + N P Q +R RI +L P+ +DDII HT +
Sbjct: 305 QPQVEEPVYEESETFNQ---------PPGEQ-DRSRIIDALGITPVEVDDIIRHTQLPPS 354
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
VYLV+LELD+AGRL HP G VS+
Sbjct: 355 AVYLVMLELDIAGRLHRHPGGLVSI 379
>gi|222085614|ref|YP_002544144.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
gi|221723062|gb|ACM26218.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
Length = 383
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 46/88 (52%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P E + F Q + + P +R +I +L P+ IDDII HTG
Sbjct: 294 LRPLAEPDLFRPQLAEAPVEKNDKALSPPPDDTDRDQIVDALGPTPVEIDDIIRHTGASV 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
V+ VLLELD+AGRL HP G VS++M
Sbjct: 354 SSVHSVLLELDMAGRLHRHPGGLVSISM 381
>gi|218674768|ref|ZP_03524437.1| DNA processing chain A protein [Rhizobium etli GR56]
Length = 380
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R+ I +L P+ IDD+I HTG+ A VYL+LLELD++GRL H G VSL+
Sbjct: 326 DRMHIIDALGPTPVEIDDVIRHTGLPASAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|260459178|ref|ZP_05807433.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
gi|259034732|gb|EEW35988.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P + +R ++ Q+L P+ +D+II HTG+ V++VLLELDLAGRL H G VSL
Sbjct: 321 PPPGESDRAKVIQALGPTPVPVDEIIRHTGLHPAQVFMVLLELDLAGRLERHAGGNVSL 379
>gi|227821656|ref|YP_002825626.1| DNA processing chain A [Sinorhizobium fredii NGR234]
gi|227340655|gb|ACP24873.1| DNA processing chain A [Sinorhizobium fredii NGR234]
Length = 386
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R + ++L P+ IDDII HTG+ A V+LVLLELDLAG+LC H VSL
Sbjct: 331 RALVVEALGPTPVEIDDIIRHTGLAASEVHLVLLELDLAGQLCRHGANLVSL 382
>gi|307301126|ref|ZP_07580895.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
gi|306904081|gb|EFN34667.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
Length = 383
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R R+ ++L P+ IDD+I +TG+ AP +++VL+ELDLAG+LC H VSL
Sbjct: 327 DRSRVVEALGPTPVAIDDLIRYTGLAAPQIHMVLVELDLAGQLCRHGGNLVSL 379
>gi|307317859|ref|ZP_07597297.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
gi|306896621|gb|EFN27369.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
Length = 383
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R R+ ++L P+ IDD+I +TG+ AP +++VL+ELDLAG+LC H VSL
Sbjct: 327 DRSRVVEALGPTPVAIDDLIRYTGLAAPQIHMVLVELDLAGQLCRHGGNLVSL 379
>gi|15965054|ref|NP_385407.1| hypothetical protein SMc01363 [Sinorhizobium meliloti 1021]
gi|15074233|emb|CAC45880.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 383
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R R+ ++L P+ IDD+I +TG+ AP +++VL+ELDLAG+LC H VSL
Sbjct: 327 DRSRVVEALGPTPVAIDDLIRYTGLAAPQIHMVLVELDLAGQLCRHGGNLVSL 379
>gi|13470875|ref|NP_102444.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
gi|14021618|dbj|BAB48230.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
Length = 377
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P + +R ++ ++L P+ +D+II HTG+ V++VLLELDLAGRL H G VSL
Sbjct: 314 PPPGESDRAKVIEALGPTPVPVDEIIRHTGLHPAQVFMVLLELDLAGRLERHAGGNVSL 372
>gi|325292667|ref|YP_004278531.1| DNA processing chain A [Agrobacterium sp. H13-3]
gi|325060520|gb|ADY64211.1| DNA processing chain A [Agrobacterium sp. H13-3]
Length = 379
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER + +L + P+ DDII HTG + V++VLLELD+AGRL H G+VSL
Sbjct: 324 ERSIVAAALGHSPVETDDIIRHTGFSSATVHMVLLELDIAGRLNRHAGGRVSL 376
>gi|319783706|ref|YP_004143182.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169594|gb|ADV13132.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 379
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + +R R+ ++L P+ +D+II HT + V++VLLELDLAGRL H G VSL
Sbjct: 314 PPPGESDRARVIEALGPTPVPVDEIIRHTRLHPAQVFMVLLELDLAGRLERHAGGNVSLV 373
Query: 89 M 89
+
Sbjct: 374 L 374
>gi|306845936|ref|ZP_07478503.1| DNA protecting protein DprA [Brucella sp. BO1]
gi|306273571|gb|EFM55416.1| DNA protecting protein DprA [Brucella sp. BO1]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|23500346|ref|NP_699786.1| DNA processing protein DprA [Brucella suis 1330]
gi|161620664|ref|YP_001594550.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|254702977|ref|ZP_05164805.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|260568110|ref|ZP_05838579.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261753586|ref|ZP_05997295.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|23463962|gb|AAN33791.1| DNA processing protein DprA, putative [Brucella suis 1330]
gi|161337475|gb|ABX63779.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|260154775|gb|EEW89856.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261743339|gb|EEY31265.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|294853600|ref|ZP_06794272.1| DNA processing protein [Brucella sp. NVSL 07-0026]
gi|294819255|gb|EFG36255.1| DNA processing protein [Brucella sp. NVSL 07-0026]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|256111481|ref|ZP_05452495.1| SMF protein [Brucella melitensis bv. 3 str. Ether]
gi|265992978|ref|ZP_06105535.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str. Ether]
gi|262763848|gb|EEZ09880.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str. Ether]
Length = 388
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|163844754|ref|YP_001622409.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
gi|163675477|gb|ABY39587.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|225686388|ref|YP_002734360.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|256262471|ref|ZP_05465003.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
gi|225642493|gb|ACO02406.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|263092207|gb|EEZ16504.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|254691038|ref|ZP_05154292.1| SMF protein [Brucella abortus bv. 6 str. 870]
Length = 381
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 317 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 372
>gi|326410760|gb|ADZ67824.1| DNA protecting protein DprA [Brucella melitensis M28]
gi|326554052|gb|ADZ88691.1| DNA protecting protein DprA [Brucella melitensis M5-90]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|254720411|ref|ZP_05182222.1| SMF protein [Brucella sp. 83/13]
gi|265985430|ref|ZP_06098165.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306839012|ref|ZP_07471833.1| DNA protecting protein DprA [Brucella sp. NF 2653]
gi|264664022|gb|EEZ34283.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306405918|gb|EFM62176.1| DNA protecting protein DprA [Brucella sp. NF 2653]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|17989012|ref|NP_541645.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|62317541|ref|YP_223394.1| DNA processing protein DprA [Brucella abortus bv. 1 str. 9-941]
gi|83269522|ref|YP_418813.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189022796|ref|YP_001932537.1| SMF protein [Brucella abortus S19]
gi|225629094|ref|ZP_03787127.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237817089|ref|ZP_04596081.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|254698822|ref|ZP_05160650.1| SMF protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254705901|ref|ZP_05167729.1| SMF protein [Brucella pinnipedialis M163/99/10]
gi|254711129|ref|ZP_05172940.1| SMF protein [Brucella pinnipedialis B2/94]
gi|254712412|ref|ZP_05174223.1| SMF protein [Brucella ceti M644/93/1]
gi|254715484|ref|ZP_05177295.1| SMF protein [Brucella ceti M13/05/1]
gi|254732269|ref|ZP_05190847.1| SMF protein [Brucella abortus bv. 4 str. 292]
gi|256015379|ref|YP_003105388.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|256029510|ref|ZP_05443124.1| SMF protein [Brucella pinnipedialis M292/94/1]
gi|256043499|ref|ZP_05446426.1| SMF protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256059205|ref|ZP_05449411.1| SMF protein [Brucella neotomae 5K33]
gi|256157705|ref|ZP_05455623.1| SMF protein [Brucella ceti M490/95/1]
gi|256253323|ref|ZP_05458859.1| SMF protein [Brucella ceti B1/94]
gi|256256223|ref|ZP_05461759.1| SMF protein [Brucella abortus bv. 9 str. C68]
gi|260167399|ref|ZP_05754210.1| DNA processing protein DprA, putative [Brucella sp. F5/99]
gi|260544777|ref|ZP_05820598.1| SMF protein [Brucella abortus NCTC 8038]
gi|260564694|ref|ZP_05835179.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260760064|ref|ZP_05872412.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260763303|ref|ZP_05875635.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260882451|ref|ZP_05894065.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|261217219|ref|ZP_05931500.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261220439|ref|ZP_05934720.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|261313331|ref|ZP_05952528.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261318720|ref|ZP_05957917.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261320090|ref|ZP_05959287.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261323154|ref|ZP_05962351.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261756809|ref|ZP_06000518.1| SMF protein [Brucella sp. F5/99]
gi|265986518|ref|ZP_06099075.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|265989917|ref|ZP_06102474.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str. Rev.1]
gi|265996210|ref|ZP_06108767.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|297249580|ref|ZP_06933281.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
gi|17984851|gb|AAL53909.1| smf protein [Brucella melitensis bv. 1 str. 16M]
gi|62197734|gb|AAX76033.1| hypothetical DprA, DNA processing protein [Brucella abortus bv. 1
str. 9-941]
gi|82939796|emb|CAJ12804.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189021370|gb|ACD74091.1| SMF protein [Brucella abortus S19]
gi|225615590|gb|EEH12639.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237787902|gb|EEP62118.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|255998039|gb|ACU49726.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|260098048|gb|EEW81922.1| SMF protein [Brucella abortus NCTC 8038]
gi|260152337|gb|EEW87430.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260670382|gb|EEX57322.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260673724|gb|EEX60545.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260871979|gb|EEX79048.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|260919023|gb|EEX85676.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|260922308|gb|EEX88876.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261292780|gb|EEX96276.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261297943|gb|EEY01440.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261299134|gb|EEY02631.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261302357|gb|EEY05854.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261736793|gb|EEY24789.1| SMF protein [Brucella sp. F5/99]
gi|262550507|gb|EEZ06668.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|263000586|gb|EEZ13276.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str. Rev.1]
gi|264658715|gb|EEZ28976.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|297173449|gb|EFH32813.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
Length = 393
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|306841750|ref|ZP_07474436.1| DNA protecting protein DprA [Brucella sp. BO2]
gi|306288155|gb|EFM59542.1| DNA protecting protein DprA [Brucella sp. BO2]
Length = 345
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 281 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 336
>gi|260756634|ref|ZP_05868982.1| DNA protecting protein DprA [Brucella abortus bv. 6 str. 870]
gi|260676742|gb|EEX63563.1| DNA protecting protein DprA [Brucella abortus bv. 6 str. 870]
Length = 343
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 279 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 334
>gi|114707187|ref|ZP_01440085.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
gi|114537383|gb|EAU40509.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
Length = 377
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
ER RI ++L P+ +DDI+ HTG V LV+LEL+LAGRL +G VS+ +
Sbjct: 323 ERDRIYEALGPTPVSVDDIVEHTGASPGAVQLVVLELELAGRLERQRDGTVSILL 377
>gi|304391708|ref|ZP_07373650.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
gi|303295937|gb|EFL90295.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
Length = 378
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
Q +R ++++SL++ P+ IDD+I HT + A V ++LLE+DLAG + H +VSL
Sbjct: 323 QSDREKLQRSLSHAPVDIDDLIRHTDLPAGAVQMLLLEMDLAGTIERHSGNRVSL 377
>gi|254695655|ref|ZP_05157483.1| SMF protein [Brucella abortus bv. 3 str. Tulya]
gi|261216055|ref|ZP_05930336.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
gi|260917662|gb|EEX84523.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
Length = 393
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L P+ +D ++ HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 329 TDRERDLVIDALGPAPVDVDTLVRHTGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|254699839|ref|ZP_05161667.1| SMF protein [Brucella suis bv. 5 str. 513]
gi|261750312|ref|ZP_05994021.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
gi|261740065|gb|EEY27991.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
Length = 393
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDL GRL +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLVGRLLRYPGNRVAI 384
>gi|148558431|ref|YP_001257589.1| SMF protein [Brucella ovis ATCC 25840]
gi|148369716|gb|ABQ62588.1| SMF protein [Brucella ovis ATCC 25840]
Length = 393
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T ER + +L VP+ +D ++ HTGIE + L+LLELDLAG L +P +V++
Sbjct: 329 TDRERDLVIDALGPVPVDVDTLVRHTGIETDAIQLILLELDLAGHLLRYPGNRVAI 384
>gi|296283690|ref|ZP_06861688.1| DNA processing chain A [Citromicrobium bathyomarinum JL354]
Length = 363
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + E V I Q L + P+ +D++I +G + V L LLEL++AGRL H GKVSL+
Sbjct: 305 DLAEAEPVEIAQLLTSAPVSVDELIRQSGAGSAAVQLALLELEIAGRLERHAGGKVSLS 363
>gi|91205528|ref|YP_537883.1| putative DNA processing protein DprA [Rickettsia bellii RML369-C]
gi|91069072|gb|ABE04794.1| Putative DNA processing protein DprA [Rickettsia bellii RML369-C]
Length = 225
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
++ D N K +N E ++ ER + + L+ VPI D + T + P++Y ++LEL+
Sbjct: 146 AELDANF-KRLNTIQVKEPSEKERAAVIELLSAVPIDFDYLQKMTELPLPIIYTIILELE 204
Query: 73 LAGRLCHHPEGKVSL 87
LAG+ HP K+SL
Sbjct: 205 LAGKAMRHPSNKISL 219
>gi|328543466|ref|YP_004303575.1| DNA protecting protein DprA [polymorphum gilvum SL003B-26A1]
gi|326413210|gb|ADZ70273.1| DNA protecting protein DprA, putative [Polymorphum gilvum
SL003B-26A1]
Length = 380
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E T R RI +L P+ ID++I TG+ A V++VLLEL+LAGRL H +VSL
Sbjct: 321 EPTDSLRDRIVSALGPTPVEIDELIRFTGLPARTVHVVLLELELAGRLERHRGQQVSL 378
>gi|149186760|ref|ZP_01865071.1| DNA processing chain A [Erythrobacter sp. SD-21]
gi|148829668|gb|EDL48108.1| DNA processing chain A [Erythrobacter sp. SD-21]
Length = 372
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E+ + E I L PI +D+++ +G A V L LLEL++AGRL H G+VSL+
Sbjct: 313 EFAEAEPADIASLLTTAPIAVDELVRQSGKGAAAVQLALLELEIAGRLERHAAGRVSLS 371
>gi|218513189|ref|ZP_03510029.1| DNA processing chain A protein [Rhizobium etli 8C-3]
Length = 352
Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+R RI +L P+ IDDII HTG+ A VYL+LLELD++
Sbjct: 313 DRNRIIDALGPTPVEIDDIIRHTGLSASAVYLILLELDIS 352
>gi|110633709|ref|YP_673917.1| DNA protecting protein DprA [Mesorhizobium sp. BNC1]
gi|110284693|gb|ABG62752.1| DNA protecting protein DprA [Chelativorans sp. BNC1]
Length = 378
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S +D T +++ T P+ + ER I Q+L P+ +D+IIHHTG+ A V LVLLELD
Sbjct: 301 STADLEETPDLSAT--PDPGENERSLILQALGAAPVAVDEIIHHTGLPAAQVLLVLLELD 358
Query: 73 LAGRLCHHPEGKVSL 87
LAGRL H GKVSL
Sbjct: 359 LAGRLERHAGGKVSL 373
>gi|146341416|ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
gi|146194222|emb|CAL78244.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
Length = 371
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P+ +R +I L P+ IDD+I +G+ V+ +VLLEL+LAGRL H G VSL
Sbjct: 312 PDPESHDRTQILGLLGPTPVSIDDLIRMSGLSPAVLRMVLLELELAGRLERHGGGMVSL 370
>gi|153010990|ref|YP_001372204.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
gi|151562878|gb|ABS16375.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
Length = 388
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P T+ +R + +L VP ID ++ HTG++ V L+LLELDLAGRL + +V+L
Sbjct: 326 PFATEEQRDIVIDALGPVPTDIDTLVRHTGMDTGAVQLILLELDLAGRLHRYAGNQVAL 384
>gi|86749541|ref|YP_486037.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
gi|86572569|gb|ABD07126.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
Length = 378
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 32/52 (61%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI L P+ IDD+I +GI VV VLLEL+LAGRL H G VSL
Sbjct: 326 RSRIVNLLGPSPVGIDDLIRLSGIAPAVVRTVLLELELAGRLERHGGGLVSL 377
>gi|83309780|ref|YP_420044.1| Rossmann fold nucleotide-binding protein [Magnetospirillum
magneticum AMB-1]
gi|82944621|dbj|BAE49485.1| Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magneticum AMB-1]
Length = 383
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R R+ ++L P+ +D+II + +V VLLE++LAGRL HP +VSL
Sbjct: 329 RARVAEALGPAPVMVDEIIRQCQLSPSMVSWVLLEIELAGRLERHPGNRVSL 380
>gi|67458923|ref|YP_246547.1| putative DNA processing protein DprA [Rickettsia felis URRWXCal2]
gi|67004456|gb|AAY61382.1| Putatie DNA processing protein DprA [Rickettsia felis URRWXCal2]
Length = 382
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+N + E +Q ER I + L++VPI + + T + P++Y V+LEL+LAG+ H
Sbjct: 315 VNTRYVKEPSQKERTAILELLSSVPIDFEFLQKETELSLPIIYTVILELELAGKAIRHAG 374
Query: 83 GKVSL 87
K+SL
Sbjct: 375 NKISL 379
>gi|91977499|ref|YP_570158.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
gi|91683955|gb|ABE40257.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
Length = 422
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 32/52 (61%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI L PI IDD+I +GI VV VLLEL+LAGRL H G VSL
Sbjct: 370 RGRIVNLLGPSPIGIDDLIRLSGIPPAVVRTVLLELELAGRLDRHGGGLVSL 421
>gi|46200754|ref|ZP_00056433.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum magnetotacticum
MS-1]
Length = 383
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 29 PEYTQCERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P+ ++ +R R + ++L P+ +D+II + +V VLLE++LAGRL HP +VS
Sbjct: 320 PDESELDRARSQVAEALGPAPVMVDEIIRQCQLSPSMVSWVLLEIELAGRLERHPGNRVS 379
Query: 87 L 87
L
Sbjct: 380 L 380
>gi|316933647|ref|YP_004108629.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
gi|315601361|gb|ADU43896.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
Length = 378
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 20 TKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T N H P E +R RI L P+ IDD+I +GI VV VLLEL+LAGR
Sbjct: 307 TPNREPEHAPPTGEPEPSDRSRILGLLGPSPVGIDDLIRLSGISPAVVRTVLLELELAGR 366
Query: 77 LCHHPEGKVSLT 88
L H VSL+
Sbjct: 367 LERHGGSLVSLS 378
>gi|295982522|pdb|3MAJ|A Chain A, Crystal Structure Of Putative Dna Processing Protein Dpra
Fr Rhodopseudomonas Palustris Cga009
Length = 382
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI L P+ IDD+I +GI VV +LLEL+LAGRL H VSL+
Sbjct: 329 DRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGGSLVSLS 382
>gi|192291901|ref|YP_001992506.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
gi|192285650|gb|ACF02031.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
Length = 378
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI L P+ IDD+I +GI VV +LLEL+LAGRL H VSL+
Sbjct: 325 DRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGGSLVSLS 378
>gi|39936183|ref|NP_948459.1| DNA processing protein DprA [Rhodopseudomonas palustris CGA009]
gi|39650038|emb|CAE28561.1| DNA processing chain A [Rhodopseudomonas palustris CGA009]
Length = 380
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R RI L P+ IDD+I +GI VV +LLEL+LAGRL H VSL+
Sbjct: 327 DRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGGSLVSLS 380
>gi|144898216|emb|CAM75080.1| DNA processing chain A [Magnetospirillum gryphiswaldense MSR-1]
Length = 377
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R + +SL +P+ +D +I + A VV +VLLEL+LAGRL HP +V+L
Sbjct: 321 RALVLESLGPMPVAVDLLIRECQLSASVVSMVLLELELAGRLERHPGQQVAL 372
>gi|241762041|ref|ZP_04760125.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241373507|gb|EER63094.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 385
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER I+ + + P+ ++++I +G+E ++ +LLE++LAGRL H G+VSL
Sbjct: 331 EREIIQSLIGSAPVGVNELIRQSGLENAIIQTILLEMELAGRLESHAGGRVSL 383
>gi|115525378|ref|YP_782289.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisA53]
gi|115519325|gb|ABJ07309.1| DNA protecting protein DprA [Rhodopseudomonas palustris BisA53]
Length = 372
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER RI L PI +DD++ G +V VLLEL+LAGRL H G VSL
Sbjct: 319 ERARIIALLGPSPIGLDDLVRLAGAPPAIVRTVLLELELAGRLERHGGGLVSL 371
>gi|90423747|ref|YP_532117.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
gi|90105761|gb|ABD87798.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
Length = 372
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R R+ L PI +DD++ G+ V VLLEL+LAGRL H G VSL
Sbjct: 319 DRARVTSLLGPSPIGLDDLVRLAGVSPAVARTVLLELELAGRLERHGGGLVSL 371
>gi|157827244|ref|YP_001496308.1| putative DNA processing protein DprA [Rickettsia bellii OSU 85-389]
gi|157802548|gb|ABV79271.1| Putative DNA processing protein DprA [Rickettsia bellii OSU 85-389]
Length = 223
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
++ D N K +N E ++ ER + L+ VPI D + T + P++Y ++LEL+
Sbjct: 146 AELDANF-KRLNTIQVKEPSEKERA--IELLSAVPIDFDYLQKMTELPLPIIYTIILELE 202
Query: 73 LAGRLCHHPEGKVSL 87
LAG+ HP K+SL
Sbjct: 203 LAGKAMRHPSNKISL 217
>gi|254501021|ref|ZP_05113172.1| DNA protecting protein DprA, putative [Labrenzia alexandrii DFL-11]
gi|222437092|gb|EEE43771.1| DNA protecting protein DprA, putative [Labrenzia alexandrii DFL-11]
Length = 378
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
R RI +L P+ +D++I + +V+++LLEL+LAGRL H K+SL +
Sbjct: 325 RARIISALGPTPVDLDELIRFAAVPPRMVHIILLELELAGRLERHRGNKISLLL 378
>gi|27380215|ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
gi|27353369|dbj|BAC50369.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 380
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R +I L VPI +DD++ +G +V VLLEL+LAGRL H G VSL
Sbjct: 327 DRDQITGLLGPVPIGLDDLVRMSGASPAIVRTVLLELELAGRLERHGGGLVSL 379
>gi|154253273|ref|YP_001414097.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
gi|154157223|gb|ABS64440.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
Length = 372
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI +L P +D+I+ P+V VLLEL+LAGRL P +VSL
Sbjct: 316 RTRILSALGPTPTPLDEIVRQASASVPLVRAVLLELELAGRLHRDPGDRVSL 367
>gi|332185639|ref|ZP_08387387.1| DNA protecting protein DprA [Sphingomonas sp. S17]
gi|332014617|gb|EGI56674.1| DNA protecting protein DprA [Sphingomonas sp. S17]
Length = 359
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +R R+ L V + +D++I +G +V VLLEL+LAGRL H G+V+L
Sbjct: 301 EANDADRRRVTDLLGPVAVTVDELIRQSGRPPAIVQTVLLELELAGRLERHAGGRVAL 358
>gi|56552090|ref|YP_162929.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543664|gb|AAV89818.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R I+ + + P+ ++++I +G+E ++ +LLE++LAGRL H G+VSL
Sbjct: 331 DREIIQSLIGSAPVGVNELIRQSGLENAIIQTILLEMELAGRLESHAGGRVSL 383
>gi|87199818|ref|YP_497075.1| DNA processing protein DprA, putative [Novosphingobium
aromaticivorans DSM 12444]
gi|87135499|gb|ABD26241.1| DNA protecting protein DprA [Novosphingobium aromaticivorans DSM
12444]
Length = 375
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E+ + L PI +D++I + A V + L+EL+LAGRL H G+VSL
Sbjct: 321 EQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELAGRLLRHAAGRVSL 373
>gi|209884919|ref|YP_002288776.1| SMF protein [Oligotropha carboxidovorans OM5]
gi|209873115|gb|ACI92911.1| SMF protein [Oligotropha carboxidovorans OM5]
Length = 377
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R RI L PI IDD++ + VV VLLEL+LAGRL H G VSL
Sbjct: 321 DRARIVGLLGPSPIGIDDLVRLSDSSPAVVRTVLLELELAGRLDRHGAGLVSL 373
>gi|92117808|ref|YP_577537.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
gi|91800702|gb|ABE63077.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
Length = 372
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R RI L VPI +DD+I +V VLLEL+LAGRL H G VS+
Sbjct: 319 DRSRIVGLLGPVPIGLDDLIRMADASPAIVRTVLLELELAGRLERHGGGLVSM 371
>gi|158424472|ref|YP_001525764.1| SMF protein [Azorhizobium caulinodans ORS 571]
gi|158331361|dbj|BAF88846.1| SMF protein [Azorhizobium caulinodans ORS 571]
Length = 374
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI + L+ VP +DD++ +G A V +VLLEL+LAGRL G V+L
Sbjct: 322 RARILELLSPVPTALDDLVRLSGASAAEVQVVLLELELAGRLERQRGGLVAL 373
>gi|85373787|ref|YP_457849.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
gi|84786870|gb|ABC63052.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
Length = 367
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E + E + L P+ +D++I +G A V L LLEL+++G+L H G+VS T
Sbjct: 308 ELAEAEPADVAGLLTTAPVAVDELIRQSGEPAAAVQLALLELEISGQLTRHAGGRVSRT 366
>gi|154247839|ref|YP_001418797.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
gi|154161924|gb|ABS69140.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
Length = 378
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R R+ L VP IDD++ +G V +VLLELDLAGRL G+V+L
Sbjct: 326 RARVVGLLGPVPTLIDDLVRLSGCSVAEVQIVLLELDLAGRLDRPGTGRVAL 377
>gi|288958693|ref|YP_003449034.1| DNA processing protein [Azospirillum sp. B510]
gi|288911001|dbj|BAI72490.1| DNA processing protein [Azospirillum sp. B510]
Length = 378
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 29 PEYTQCERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P+ + R R + ++L + P+ ID+++ + APVV V+LEL+LAGR+ P +VS
Sbjct: 317 PDESDLARARALVLENLGHSPVTIDELVRGCQLSAPVVLTVVLELELAGRVQRLPGHQVS 376
Query: 87 L 87
L
Sbjct: 377 L 377
>gi|4511994|gb|AAD21554.1| DNA processing chain A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R I+ + + P+ ++++I +G+E ++ +LLE++LAGRL H G+VSL
Sbjct: 331 DREIIQSLIGSGPVGVNELIRQSGLENAIIQTILLEMELAGRLESHAGGRVSL 383
>gi|75676200|ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255]
gi|74421070|gb|ABA05269.1| SMF protein [Nitrobacter winogradskyi Nb-255]
Length = 372
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R RI L PI +DD+I VV VLLEL+LAGRL H G VS+
Sbjct: 319 DRARIIALLGPAPIGLDDLIRMANAPPAVVRTVLLELELAGRLERHGGGLVSM 371
>gi|170746908|ref|YP_001753168.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
gi|170653430|gb|ACB22485.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
Length = 403
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P Q +R RI L P+ D++ G+ A +V VLLEL+L GR+ H G VSL
Sbjct: 342 PPEPQDDRARIVALLGPSPVGTDELARSAGVGARIVQSVLLELELDGRIERHGSGTVSL 400
>gi|299135144|ref|ZP_07028335.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
gi|298590121|gb|EFI50325.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
Length = 373
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 31/58 (53%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +R RI L PI IDD++ +V VLLEL++AGRL H G VSL
Sbjct: 315 EPQDTDRARIVGLLGPSPIGIDDLVRMAETSPAIVRTVLLELEMAGRLERHGGGMVSL 372
>gi|85716403|ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A]
gi|85696760|gb|EAQ34646.1| SMF protein [Nitrobacter sp. Nb-311A]
Length = 372
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI L PI DD+I + VV VLLEL+LAGRL H G VS+
Sbjct: 320 RARIVALLGPAPIGPDDLIRMADVPPAVVRTVLLELELAGRLERHGGGLVSM 371
>gi|118590183|ref|ZP_01547586.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
gi|118437155|gb|EAV43793.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
Length = 378
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
R R+ +L P+ +D++I +A V++VLLEL+LAGRL H K+S M
Sbjct: 325 RERVLAALGPTPVDMDELIRFADGDARSVHVVLLELELAGRLERHRGNKISALM 378
>gi|260752380|ref|YP_003225273.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258551743|gb|ACV74689.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 385
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R I+ + + + ++++I +G+E ++ +LLE++LAGRL H G+VSL
Sbjct: 331 DREIIQSLIGSASVGVNELIRQSGLENAIIQTILLEMELAGRLESHAGGRVSL 383
>gi|188582755|ref|YP_001926200.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
gi|179346253|gb|ACB81665.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
Length = 397
Score = 42.4 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R R+ L+ P+ D++ TG+ VV LLEL+L GR+ H G VSL
Sbjct: 341 DRTRLIARLSPTPVATDELARSTGLPVRVVQTTLLELELDGRIERHGSGTVSL 393
>gi|254562490|ref|YP_003069585.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
gi|254269768|emb|CAX25740.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
Length = 397
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P + +R R+ L+ P+ D++ TG+ +V LLEL+L GR+ H G VSL
Sbjct: 335 PPEPRDDRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIERHGSGTVSL 393
>gi|218531570|ref|YP_002422386.1| DNA protecting protein DprA [Methylobacterium chloromethanicum CM4]
gi|218523873|gb|ACK84458.1| DNA protecting protein DprA [Methylobacterium chloromethanicum CM4]
Length = 397
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P + +R R+ L+ P+ D++ TG+ +V LLEL+L GR+ H G VSL
Sbjct: 335 PPEPRDDRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIERHGSGTVSL 393
>gi|163852730|ref|YP_001640773.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
gi|163664335|gb|ABY31702.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
Length = 397
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P + +R R+ L+ P+ D++ TG+ +V LLEL+L GR+ H G VSL
Sbjct: 335 PPEPRDDRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIERHGSGTVSL 393
>gi|326387674|ref|ZP_08209280.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207720|gb|EGD58531.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
Length = 383
Score = 42.0 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I L P+ +D++I TG V + L+EL+LAGRL H G+VS+
Sbjct: 333 IAAMLGPAPVPVDELIRQTGAPPGSVQMALVELELAGRLHRHAGGRVSI 381
>gi|296445900|ref|ZP_06887851.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
gi|296256568|gb|EFH03644.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
Length = 412
Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
L P+ ID++I G+ A V+ LLELDLAGR+ H VSL
Sbjct: 367 LGPAPVTIDELIRAAGLPAREVHAALLELDLAGRVARHGANLVSL 411
>gi|197104784|ref|YP_002130161.1| dprA protein [Phenylobacterium zucineum HLK1]
gi|196478204|gb|ACG77732.1| dprA protein [Phenylobacterium zucineum HLK1]
Length = 362
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R R+ L+ P+ D+++ TG AP V+ L+EL LAGR P G VS
Sbjct: 311 RERVAALLSPTPVSRDELVRATGAPAPAVFAALVELSLAGRADLLPGGMVS 361
>gi|258541849|ref|YP_003187282.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256632927|dbj|BAH98902.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256635984|dbj|BAI01953.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-03]
gi|256639039|dbj|BAI05001.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-07]
gi|256642093|dbj|BAI08048.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-22]
gi|256645148|dbj|BAI11096.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-26]
gi|256648203|dbj|BAI14144.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-32]
gi|256651256|dbj|BAI17190.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654247|dbj|BAI20174.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-12]
Length = 214
Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 7 EQNFFSSQSDTNHTKNINIT-HYPEYTQCERVR--IKQSLNNVPIHIDDIIHHTGIEAPV 63
E+ FF+S + + + I + H+ + + VR + L+ PI +DD+I A
Sbjct: 122 ERAFFASPQNVDEKEPIALKPHFSAASTAQDVRENLLSLLSFTPIAVDDLIRRCQFSASA 181
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLT 88
V + L EL+L+G + + G V L
Sbjct: 182 VLVALTELELSGCVSTYSGGMVGLA 206
>gi|294084185|ref|YP_003550943.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663758|gb|ADE38859.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 367
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+C + I + + P+ IDDIIH + A +V+ LLEL+LAG + H +VS
Sbjct: 308 KCRNI-ITEGVGPDPVAIDDIIHLCDMPASIVWAALLELELAGVILRHHGNRVS 360
>gi|217968559|ref|YP_002353793.1| DNA protecting protein DprA [Thauera sp. MZ1T]
gi|217505886|gb|ACK52897.1| DNA protecting protein DprA [Thauera sp. MZ1T]
Length = 387
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
ER R+ +++ + P+ +D I G+ +Y +LL L+L GRL P G+
Sbjct: 333 ERTRVLEAIGHDPVDLDTIAARCGLTVDALYAILLPLELEGRLAKLPGGR 382
>gi|307292856|ref|ZP_07572702.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
gi|306880922|gb|EFN12138.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
Length = 360
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+R + L + +D++I +G+ +V VLLEL+LA RL H GKVS++
Sbjct: 307 DRAAVIGLLGMAAVPVDEVIRLSGLAPAIVQTVLLELELADRLERHAGGKVSIS 360
>gi|323136208|ref|ZP_08071290.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
gi|322398282|gb|EFY00802.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
Length = 424
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P+ +D++I G+ A V+ VL+ELDLAGRL H VSL
Sbjct: 378 PVAVDELIRIAGLPARDVHGVLVELDLAGRLERHGTNAVSL 418
>gi|323140195|ref|ZP_08075173.1| SMF family protein [Methylocystis sp. ATCC 49242]
gi|322394547|gb|EFX97170.1| SMF family protein [Methylocystis sp. ATCC 49242]
Length = 207
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
L P+ +D++I G+ A V+ VL+ELDLAGRL H VSL
Sbjct: 157 LGPSPVAVDELIRIAGLPARDVHGVLVELDLAGRLERHGTNAVSL 201
>gi|240140065|ref|YP_002964542.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
gi|240010039|gb|ACS41265.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
Length = 397
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P + +R R+ L+ P+ D++ TG+ +V LLEL+L G++ H G VSL
Sbjct: 335 PPEPRDDRERLIACLSPAPVGTDELARSTGLSVRIVQTTLLELELDGQIERHGSGTVSL 393
>gi|300022164|ref|YP_003754775.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
gi|299523985|gb|ADJ22454.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
Length = 399
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 42 SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+L+ PI +D I TG+ V + LLELDLAGR+ H VSL
Sbjct: 351 ALSPAPIAVDAIARGTGLAIQSVQIALLELDLAGRIERHGLSLVSL 396
>gi|307946437|ref|ZP_07661772.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
gi|307770101|gb|EFO29327.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
Length = 378
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
Y E R + +L P +D++I + A V ++LLEL+LAGRL H +SL
Sbjct: 317 YQEPDDSSRSAVLSALGPTPTDVDELIRFLCVPARSVNVILLELELAGRLERHRGNTISL 376
>gi|83594524|ref|YP_428276.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
gi|83577438|gb|ABC23989.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
Length = 374
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
R R+ ++L P+ +D++I + VV +VLLEL+LAGRL
Sbjct: 321 RPRVIEALGMSPVGVDEVIRLCTLPPAVVAVVLLELELAGRL 362
>gi|163792865|ref|ZP_02186841.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
gi|159181511|gb|EDP66023.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
Length = 379
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ H E R + L P+ +D++I + AP+V LLE +LAG + +P +
Sbjct: 311 VAHPLESDDTTRRTVLDVLGPEPVPVDELIRGCQLSAPIVATALLEAELAGLVDRYPGNQ 370
Query: 85 VSLTMHLPS 93
V+ M P+
Sbjct: 371 VARRMSTPA 379
>gi|182416693|ref|ZP_02948094.1| DNA uptake protein [Clostridium butyricum 5521]
gi|237667207|ref|ZP_04527191.1| DNA protecting protein DprA [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379455|gb|EDT76948.1| DNA uptake protein [Clostridium butyricum 5521]
gi|237655555|gb|EEP53111.1| DNA protecting protein DprA [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 353
Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
NI P ++ RI L +VP+HIDD+ T E +Y +L E+ +
Sbjct: 288 NIEIRPMIKSPDKRRILNCLTDVPMHIDDVFRKTNFERGALYALLFEMQI 337
>gi|85708361|ref|ZP_01039427.1| DNA processing chain A [Erythrobacter sp. NAP1]
gi|85689895|gb|EAQ29898.1| DNA processing chain A [Erythrobacter sp. NAP1]
Length = 384
Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
I + L PI +D++I +G + V++ LLEL+L G + G V LT
Sbjct: 335 ITRLLTTAPIGVDELIRQSGADPAAVHMTLLELELGGEVERGDGGMVRLT 384
>gi|89895301|ref|YP_518788.1| hypothetical protein DSY2555 [Desulfitobacterium hafniense Y51]
gi|219669735|ref|YP_002460170.1| DNA protecting protein DprA [Desulfitobacterium hafniense DCB-2]
gi|89334749|dbj|BAE84344.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539995|gb|ACL21734.1| DNA protecting protein DprA [Desulfitobacterium hafniense DCB-2]
Length = 389
Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
E+ +I L++VP HID I ++ + + L LLEL LAGR+ P
Sbjct: 333 EQQQILNQLSDVPTHIDQITMNSEVPPEQIPLALLELQLAGRIEQLP 379
>gi|49474246|ref|YP_032288.1| DNA processing chain A [Bartonella quintana str. Toulouse]
gi|49239750|emb|CAF26132.1| DNA processing chain A [Bartonella quintana str. Toulouse]
Length = 410
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 4 PQIEQNFFS-SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQI++ FS S +TN + +I ER + +L+ PI +D + H+G+
Sbjct: 321 PQIKKESFSLSNRETNSSSSIG-------DDSERAALLSALSTTPIDLDTLSTHSGVPLQ 373
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
+YL+L+EL+LAG+L H G VSL+
Sbjct: 374 NLYLLLVELELAGKLIRHSGGYVSLS 399
>gi|163868294|ref|YP_001609503.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
gi|161017950|emb|CAK01508.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
Length = 404
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 4 PQIEQNFFSSQSDTNHTK-NINITH----YPEYT--QCERVRIKQSLNNVPIHIDDIIHH 56
P + NFF S K N N + +P T R + +L+ PI +D + H
Sbjct: 302 PNSQLNFFEEPSSLKIEKENFNSAYEKNAHPSLTGDDAARAAVLSALSTTPIDLDTLSIH 361
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+G+ P +YL+L+EL+LAG+L H G VSL+
Sbjct: 362 SGVSLPTLYLLLVELELAGKLIRHSGGCVSLS 393
>gi|331269644|ref|YP_004396136.1| DNA uptake protein [Clostridium botulinum BKT015925]
gi|329126194|gb|AEB76139.1| DNA uptake protein [Clostridium botulinum BKT015925]
Length = 359
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
E ++ + +N+VPIH D+++ T I+ +Y VL EL L
Sbjct: 302 EETKVYKHINSVPIHFDEVLRLTNIDIKQLYEVLFELQL 340
>gi|312115161|ref|YP_004012757.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
gi|311220290|gb|ADP71658.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
Length = 487
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ Q L+ PI IDDI TG + V+ ++ LDLAGRL
Sbjct: 437 VMQLLSFSPIAIDDICRMTGKQTREVHAAIMSLDLAGRL 475
>gi|115353234|ref|YP_775073.1| DNA protecting protein DprA [Burkholderia ambifaria AMMD]
gi|115283222|gb|ABI88739.1| DNA protecting protein DprA [Burkholderia ambifaria AMMD]
Length = 422
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P T ER + +L P+ + + H+G+ V+Y LL L+LAGR+ P G+ +
Sbjct: 348 PPDTPAER-SVLAALGYGPVTYEWLAEHSGLSDDVLYSALLALELAGRVASVPGGRFARL 406
Query: 89 MHLPSP 94
P+P
Sbjct: 407 DAAPTP 412
>gi|240850661|ref|YP_002972061.1| DNA processing chain A [Bartonella grahamii as4aup]
gi|240267784|gb|ACS51372.1| DNA processing chain A [Bartonella grahamii as4aup]
Length = 404
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 4 PQIEQNFFSSQSDTNHTK-NINITHYPEYT------QCERVRIKQSLNNVPIHIDDIIHH 56
P + NFF S K N N+ + R + +L+ PI +D + H
Sbjct: 302 PNSQLNFFEEPSSLQLKKENFNLADEKNSSLSLAGDDAARAAVLSALSTTPIDLDTLSIH 361
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT-MHLPS-PQ 95
+G+ P +YL+L+ELDLAG+L H G VSL+ + LP PQ
Sbjct: 362 SGVSLPALYLLLVELDLAGKLIRHSGGCVSLSNLDLPQEPQ 402
>gi|298291505|ref|YP_003693444.1| DNA protecting protein DprA [Starkeya novella DSM 506]
gi|296928016|gb|ADH88825.1| DNA protecting protein DprA [Starkeya novella DSM 506]
Length = 369
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
PE ++ R + L VP+ +DD++ +G + ++LLEL+LAGRL HP G VSL
Sbjct: 310 PEPSEDARTHVLALLGPVPLPVDDLVVLSGASVGEIQILLLELELAGRLERHPGGAVSL 368
>gi|121602381|ref|YP_989130.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
gi|120614558|gb|ABM45159.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
Length = 396
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E+++ NH+ T P ER I +L+ PI +D + H+G+ +YL
Sbjct: 304 EESYPIQLQQENHSLPKPSTKAPFADDTERAAILSALSTTPIDLDTLSSHSGVPLQNLYL 363
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
+L+ELDLAG+L H G VSL+ P PQ
Sbjct: 364 LLIELDLAGKLTRHSGGYVSLSTENP-PQ 391
>gi|329114375|ref|ZP_08243137.1| Protein Smf [Acetobacter pomorum DM001]
gi|326696451|gb|EGE48130.1| Protein Smf [Acetobacter pomorum DM001]
Length = 412
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 7 EQNFFSSQSDTNHTKNINIT-HY--PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E FF+S + + + I + H+ P Q R + L+ PI +DD+I A
Sbjct: 320 EPAFFTSPQNVDEKEPIALKPHFSAPSTAQDVRENLLSLLSFTPIAVDDLIRRCQFSASA 379
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
V + L EL+L+G + + G V L
Sbjct: 380 VLVALTELELSGCVSTYSGGMVGL 403
>gi|310778327|ref|YP_003966660.1| DNA protecting protein DprA [Ilyobacter polytropus DSM 2926]
gi|309747650|gb|ADO82312.1| DNA protecting protein DprA [Ilyobacter polytropus DSM 2926]
Length = 357
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+++D++I TGI A + VL+EL+L G +C P GK
Sbjct: 315 MNLDELIMSTGIRAGELLAVLMELELKGLICGAPGGK 351
>gi|253682393|ref|ZP_04863190.1| DNA protecting protein DprA [Clostridium botulinum D str. 1873]
gi|253562105|gb|EES91557.1| DNA protecting protein DprA [Clostridium botulinum D str. 1873]
Length = 359
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++ ++ N+ SD + KN++I + ++ + +N+VPIH D+++ T I+
Sbjct: 280 IYDLLKLNYVEKTSD--NIKNMSI---------KETKVYKHINSVPIHFDEVLRLTNIDI 328
Query: 62 PVVYLVLLELDL 73
+Y VL EL L
Sbjct: 329 KQLYEVLFELQL 340
>gi|255524245|ref|ZP_05391204.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|296185366|ref|ZP_06853776.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|255512070|gb|EET88351.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|296050200|gb|EFG89624.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
Length = 359
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ T E+ +I S+ + P HIDDI T ++ +Y VL EL L
Sbjct: 298 QMTSIEK-KIYDSITDTPAHIDDIFERTNVDIKQLYEVLFELQL 340
>gi|159043687|ref|YP_001532481.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
gi|157911447|gb|ABV92880.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
Length = 379
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R R+ +L P+ D +I G+ A V L+EL+++G++ P G +SL
Sbjct: 326 RGRVLATLGATPLPEDQVIRALGLPAAQVNAALVELEMSGQITRAPGGMLSL 377
>gi|225181360|ref|ZP_03734804.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
gi|225167941|gb|EEG76748.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
Length = 357
Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S+ +T TK + ++ TQ + ++L P H D+I G+ AP + L+EL+
Sbjct: 289 SEQETAATKAVQLSD----TQAS---VLETLQYEPAHFDEIADRCGLPAPQLAATLVELE 341
Query: 73 LAGRLCHHP 81
LAG L P
Sbjct: 342 LAGLLRKLP 350
>gi|148284625|ref|YP_001248715.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
gi|146740064|emb|CAM80189.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 386
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T +R +K L++VP+ I+ I++ T + +V +++LEL+LAG
Sbjct: 324 TDDQRTIVKNILSSVPLDIEVIVNQTKLPMNIVNVIILELELAG 367
>gi|189183183|ref|YP_001936968.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
gi|189179954|dbj|BAG39734.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
Length = 386
Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T +R +K L++VP+ I+ I++ T + +V +++LEL+LAG
Sbjct: 324 TDDQRTIVKNILSSVPLDIEVIVNQTKLPMNIVNVIILELELAG 367
>gi|300854485|ref|YP_003779469.1| putative Smf protein [Clostridium ljungdahlii DSM 13528]
gi|300434600|gb|ADK14367.1| predicted Smf protein [Clostridium ljungdahlii DSM 13528]
Length = 366
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
C+ +I + ++P+HID+I T ++ +Y +L EL L G +
Sbjct: 304 CKEEKICNVIGHIPMHIDEISRITNVDIKRLYELLFELQLKGEI 347
>gi|170697717|ref|ZP_02888804.1| DNA protecting protein DprA [Burkholderia ambifaria IOP40-10]
gi|170137332|gb|EDT05573.1| DNA protecting protein DprA [Burkholderia ambifaria IOP40-10]
Length = 422
Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
I + P +T ER + +L P+ + + H+G+ V++ LL L+LAGR+ P G+
Sbjct: 344 IKNAPPHTPAER-SVLAALGYGPVTYEWLAEHSGLSDDVLHSALLALELAGRVASVPGGR 402
Query: 85 VS 86
+
Sbjct: 403 FA 404
>gi|150016069|ref|YP_001308323.1| DNA protecting protein DprA [Clostridium beijerinckii NCIMB 8052]
gi|149902534|gb|ABR33367.1| DNA protecting protein DprA [Clostridium beijerinckii NCIMB 8052]
Length = 351
Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
E+ I + + + PIHIDDI +T ++ +Y +L E+ + + P
Sbjct: 297 EKSEILELITDSPIHIDDIFKNTSVDRGALYALLFEMQIKSEIICLP 343
Searching..................................................done
Results from round 2
>gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039982|gb|ACT56778.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 95
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE
Sbjct: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ
Sbjct: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
>gi|222085614|ref|YP_002544144.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
gi|221723062|gb|ACM26218.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
Length = 383
Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 46/90 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P E + F Q + + P +R +I +L P+ IDDII HTG
Sbjct: 294 LRPLAEPDLFRPQLAEAPVEKNDKALSPPPDDTDRDQIVDALGPTPVEIDDIIRHTGASV 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
V+ VLLELD+AGRL HP G VS++M
Sbjct: 354 SSVHSVLLELDMAGRLHRHPGGLVSISMLD 383
>gi|86357273|ref|YP_469165.1| DNA processing chain A protein [Rhizobium etli CFN 42]
gi|86281375|gb|ABC90438.1| probable DNA processing chain A protein [Rhizobium etli CFN 42]
Length = 380
Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 2 VHPQIE-QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + F SS+++ ++ IT P +R+RI +L P+ IDD+I HTG+
Sbjct: 294 LAPLAQLELFPSSRAEAPAGESKPITMPP--GDSDRMRIIDALGPTPVEIDDVIRHTGLP 351
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
A VYL+LLELD++GRL H G VSL+
Sbjct: 352 ASAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|241204123|ref|YP_002975219.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858013|gb|ACS55680.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 380
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + F S + P +R RI +L P+ IDD+I HTG+ A
Sbjct: 294 LAPLAQFDLFPSSMAEEPAPDGKPMSVP-PGDSDRNRIIDALGPTPVEIDDVIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|116251502|ref|YP_767340.1| smf protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115256150|emb|CAK07231.1| putative smf protein [Rhizobium leguminosarum bv. viciae 3841]
Length = 380
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + F S + P +R RI +L P+ IDD+I HTG+ A
Sbjct: 294 LAPLAQFDLFPSSMAEKPAPDGKAMSVP-PGDSDRNRIIDALGPTPVEIDDVIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|218674768|ref|ZP_03524437.1| DNA processing chain A protein [Rhizobium etli GR56]
Length = 380
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 2 VHPQIE-QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + F SS ++ ++ IT P +R+ I +L P+ IDD+I HTG+
Sbjct: 294 LAPLAQLELFPSSGAEEPAGESRPITMPP--GDSDRMHIIDALGPTPVEIDDVIRHTGLP 351
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
A VYL+LLELD++GRL H G VSL+
Sbjct: 352 ASAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|222148310|ref|YP_002549267.1| DNA protecting protein DprA [Agrobacterium vitis S4]
gi|221735298|gb|ACM36261.1| DNA protecting protein DprA [Agrobacterium vitis S4]
Length = 383
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ+E+ + N + +R RI +L P+ +DDII HT +
Sbjct: 305 QPQVEEPVYEESETFNQ----------PPGEQDRSRIIDALGITPVEVDDIIRHTQLPPS 354
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
VYLV+LELD+AGRL HP G VS+
Sbjct: 355 AVYLVMLELDIAGRLHRHPGGLVSIA 380
>gi|209548899|ref|YP_002280816.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534655|gb|ACI54590.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 380
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S +R RI +L P+ IDDII HTG+ A
Sbjct: 294 LAPLAQFELFPSSMAEEP-PRDGGAMTMPPGDTDRNRIIDALGPTPVEIDDIIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD+AGRL H G +SL+
Sbjct: 353 SAVYLILLELDIAGRLHRHQGGLISLS 379
>gi|190891322|ref|YP_001977864.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
gi|190696601|gb|ACE90686.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
Length = 380
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S T+ P +R RI +L P+ IDDII HTG+ A
Sbjct: 294 LAPLAQFELFPSSMAEEPTRGGGAMTMP-PGDTDRNRIIDALGPTPVEIDDIIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|218663674|ref|ZP_03519604.1| DNA processing chain A protein [Rhizobium etli IE4771]
Length = 147
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 2 VHPQIE-QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + F SS+++ ++ IT P +R+RI +L P+ IDD+I HTG+
Sbjct: 61 LAPLAQFELFPSSRAEEPAGESRPITMPP--GDSDRMRIIDALGPTPLEIDDVIRHTGLS 118
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
A VYL+LLELD++GRL H G VSL++
Sbjct: 119 ASAVYLILLELDISGRLHRHQGGLVSLSV 147
>gi|15888630|ref|NP_354311.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
gi|15156358|gb|AAK87096.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
Length = 380
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P +E D + + ER I +L P+ IDDII HTG A
Sbjct: 294 LRPLMEPQLP---YDCKIEEPRSDEEMSPPGDDERSVIASALGPSPVEIDDIIRHTGFSA 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
V+LVLLELD+AGRL H G+VSL +
Sbjct: 351 AAVHLVLLELDIAGRLNRHAGGRVSLFVAD 380
>gi|163759336|ref|ZP_02166422.1| putative smf protein [Hoeflea phototrophica DFL-43]
gi|162283740|gb|EDQ34025.1| putative smf protein [Hoeflea phototrophica DFL-43]
Length = 383
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 44/83 (53%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
F + + + E +R R+ ++L P +DDII HTG+ A VYLVL+
Sbjct: 301 FSDDEPVMEEPGDDETDRFAEPGDDDRARVIEALGPSPSEVDDIIRHTGVAAATVYLVLI 360
Query: 70 ELDLAGRLCHHPEGKVSLTMHLP 92
ELDLAGRL HP G VSL P
Sbjct: 361 ELDLAGRLHRHPGGMVSLAFDDP 383
>gi|15965054|ref|NP_385407.1| hypothetical protein SMc01363 [Sinorhizobium meliloti 1021]
gi|15074233|emb|CAC45880.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 383
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + +R R+ ++L P+ IDD+I +TG+ A
Sbjct: 294 LAPLSRDDLFSRLEANEPSAEEPRPMPQPPDDTDRSRVVEALGPTPVAIDDLIRYTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
P +++VL+ELDLAG+LC H VSL
Sbjct: 354 PQIHMVLVELDLAGQLCRHGGNLVSLA 380
>gi|307317859|ref|ZP_07597297.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
gi|306896621|gb|EFN27369.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
Length = 383
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + +R R+ ++L P+ IDD+I +TG+ A
Sbjct: 294 LAPLSRDDLFSRLEANEPSAEEPRPMPQPPDDTDRSRVVEALGPTPVAIDDLIRYTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
P +++VL+ELDLAG+LC H VSL
Sbjct: 354 PQIHMVLVELDLAGQLCRHGGNLVSLA 380
>gi|319783706|ref|YP_004143182.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169594|gb|ADV13132.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 379
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + +R R+ ++L P+ +D+II HT + V++VLLELDLAGRL
Sbjct: 303 PFEEPPDFLAAPPPGESDRARVIEALGPTPVPVDEIIRHTRLHPAQVFMVLLELDLAGRL 362
Query: 78 CHHPEGKVSLTMHLPS 93
H G VSL + S
Sbjct: 363 ERHAGGNVSLVLGDSS 378
>gi|13470875|ref|NP_102444.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
gi|14021618|dbj|BAB48230.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
Length = 377
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + + + P + +R ++ ++L P+ +D+II HTG+ V++VLLEL
Sbjct: 297 RAPAVPPFEDPPDFSATPPPGESDRAKVIEALGPTPVPVDEIIRHTGLHPAQVFMVLLEL 356
Query: 72 DLAGRLCHHPEGKVSLTM 89
DLAGRL H G VSL
Sbjct: 357 DLAGRLERHAGGNVSLIF 374
>gi|260459178|ref|ZP_05807433.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
gi|259034732|gb|EEW35988.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + +R ++ Q+L P+ +D+II HTG+ V++VLLELDLAGRL
Sbjct: 310 PFEDPPDFSATPPPGESDRAKVIQALGPTPVPVDEIIRHTGLHPAQVFMVLLELDLAGRL 369
Query: 78 CHHPEGKVSLTMH 90
H G VSL
Sbjct: 370 ERHAGGNVSLLFE 382
>gi|325292667|ref|YP_004278531.1| DNA processing chain A [Agrobacterium sp. H13-3]
gi|325060520|gb|ADY64211.1| DNA processing chain A [Agrobacterium sp. H13-3]
Length = 379
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P +E + + ++ ER + +L + P+ DDII HTG +
Sbjct: 294 LRPLMEPQLPYDRKVEEPRSDEEMS---PPGDDERSIVAAALGHSPVETDDIIRHTGFSS 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
V++VLLELD+AGRL H G+VSL
Sbjct: 351 ATVHMVLLELDIAGRLNRHAGGRVSLLAD 379
>gi|150396156|ref|YP_001326623.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
gi|150027671|gb|ABR59788.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
Length = 383
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPE-YTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + FS + N + P +R R+ ++L P+ IDD+I HTG+
Sbjct: 294 LAPLSRDDLFS-RLHVNEPALEELRPVPRAPDDSDRSRVVEALGPTPVEIDDLIRHTGLA 352
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
AP ++LVL+ELDLAG+LC H VS+
Sbjct: 353 APQIHLVLVELDLAGQLCRHGGNLVSIA 380
>gi|316933647|ref|YP_004108629.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
gi|315601361|gb|ADU43896.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
Length = 378
Score = 97.4 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 19 HTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T N H P E +R RI L P+ IDD+I +GI VV VLLEL+LAG
Sbjct: 306 ETPNREPEHAPPTGEPEPSDRSRILGLLGPSPVGIDDLIRLSGISPAVVRTVLLELELAG 365
Query: 76 RLCHHPEGKVSLT 88
RL H VSL+
Sbjct: 366 RLERHGGSLVSLS 378
>gi|307301126|ref|ZP_07580895.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
gi|306904081|gb|EFN34667.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
Length = 383
Score = 97.4 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + +R R+ ++L P+ IDD+I +TG+ A
Sbjct: 294 LAPLSRDDLFSRLEANEPSAEEPRPMPMPPDDTDRSRVVEALGPTPVAIDDLIRYTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
P +++VL+ELDLAG+LC H VSL
Sbjct: 354 PQIHMVLVELDLAGQLCRHGGNLVSLA 380
>gi|90417726|ref|ZP_01225638.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
gi|90337398|gb|EAS51049.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
Length = 376
Score = 97.0 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 39/60 (65%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
E + ER RI ++L PI +DDII HTG V LVLLELDLAGRL HP G VSL +
Sbjct: 317 EPAEGERERIVETLGPTPIDVDDIILHTGARPGAVQLVLLELDLAGRLERHPGGLVSLLL 376
>gi|254501021|ref|ZP_05113172.1| DNA protecting protein DprA, putative [Labrenzia alexandrii DFL-11]
gi|222437092|gb|EEE43771.1| DNA protecting protein DprA, putative [Labrenzia alexandrii DFL-11]
Length = 378
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+IE Q D N + + E + R RI +L P+ +D++I + +V
Sbjct: 295 RIEPVLPFDQ-DLNEPEKDLFSAAQEPDESLRARIISALGPTPVDLDELIRFAAVPPRMV 353
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
+++LLEL+LAGRL H K+SL +
Sbjct: 354 HIILLELELAGRLERHRGNKISLLL 378
>gi|146341416|ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
gi|146194222|emb|CAL78244.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
Length = 371
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P +E+ S + + P+ +R +I L P+ IDD+I +G+
Sbjct: 290 VGPIMERPLPLSLREPDEE-----LFAPDPESHDRTQILGLLGPTPVSIDDLIRMSGLSP 344
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V+ +VLLEL+LAGRL H G VSL
Sbjct: 345 AVLRMVLLELELAGRLERHGGGMVSL 370
>gi|115525378|ref|YP_782289.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisA53]
gi|115519325|gb|ABJ07309.1| DNA protecting protein DprA [Rhodopseudomonas palustris BisA53]
Length = 372
Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 35/79 (44%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + E + ER RI L PI +DD++ G +V VL
Sbjct: 293 PVLQRPIELPSREPDQPAALDEPGEGERARIIALLGPSPIGLDDLVRLAGAPPAIVRTVL 352
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAGRL H G VSL
Sbjct: 353 LELELAGRLERHGGGLVSL 371
>gi|39936183|ref|NP_948459.1| DNA processing protein DprA [Rhodopseudomonas palustris CGA009]
gi|39650038|emb|CAE28561.1| DNA processing chain A [Rhodopseudomonas palustris CGA009]
Length = 380
Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 19 HTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
H P E +R RI L P+ IDD+I +GI VV +LLEL+LAG
Sbjct: 308 ELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAG 367
Query: 76 RLCHHPEGKVSLT 88
RL H VSL+
Sbjct: 368 RLERHGGSLVSLS 380
>gi|295982522|pdb|3MAJ|A Chain A, Crystal Structure Of Putative Dna Processing Protein Dpra
Fr Rhodopseudomonas Palustris Cga009
Length = 382
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 19 HTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
H P E +R RI L P+ IDD+I +GI VV +LLEL+LAG
Sbjct: 310 ELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAG 369
Query: 76 RLCHHPEGKVSLT 88
RL H VSL+
Sbjct: 370 RLERHGGSLVSLS 382
>gi|227821656|ref|YP_002825626.1| DNA processing chain A [Sinorhizobium fredii NGR234]
gi|227340655|gb|ACP24873.1| DNA processing chain A [Sinorhizobium fredii NGR234]
Length = 386
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTG 58
+ P + FS + + P + R + ++L P+ IDDII HTG
Sbjct: 294 LAPLSRDDLFSRLNAREPAVEPAPSGPPATATLGEGGRALVVEALGPTPVEIDDIIRHTG 353
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ A V+LVLLELDLAG+LC H VSL
Sbjct: 354 LAASEVHLVLLELDLAGQLCRHGANLVSLA 383
>gi|192291901|ref|YP_001992506.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
gi|192285650|gb|ACF02031.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
Length = 378
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 19 HTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
H P E +R RI L P+ IDD+I +GI VV +LLEL+LAG
Sbjct: 306 ELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLELELAG 365
Query: 76 RLCHHPEGKVSLT 88
RL H VSL+
Sbjct: 366 RLERHGGSLVSLS 378
>gi|328543466|ref|YP_004303575.1| DNA protecting protein DprA [polymorphum gilvum SL003B-26A1]
gi|326413210|gb|ADZ70273.1| DNA protecting protein DprA, putative [Polymorphum gilvum
SL003B-26A1]
Length = 380
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+IE + ++ E T R RI +L P+ ID++I TG+ A V
Sbjct: 297 RIEPVLPFEGEISEPDQSAPPE-PIEPTDSLRDRIVSALGPTPVEIDELIRFTGLPARTV 355
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
++VLLEL+LAGRL H +VSL
Sbjct: 356 HVVLLELELAGRLERHRGQQVSLV 379
>gi|46200754|ref|ZP_00056433.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum magnetotacticum
MS-1]
Length = 383
Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 29 PEYTQCERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P+ ++ +R R + ++L P+ +D+II + +V VLLE++LAGRL HP +VS
Sbjct: 320 PDESELDRARSQVAEALGPAPVMVDEIIRQCQLSPSMVSWVLLEIELAGRLERHPGNRVS 379
Query: 87 LTM 89
L +
Sbjct: 380 LLV 382
>gi|299135144|ref|ZP_07028335.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
gi|298590121|gb|EFI50325.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
Length = 373
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ ++ E +R RI L PI IDD++ +V VLLEL++AG
Sbjct: 301 ELPMEEDEAPHESREPQDTDRARIVGLLGPSPIGIDDLVRMAETSPAIVRTVLLELEMAG 360
Query: 76 RLCHHPEGKVSL 87
RL H G VSL
Sbjct: 361 RLERHGGGMVSL 372
>gi|91977499|ref|YP_570158.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
gi|91683955|gb|ABE40257.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
Length = 422
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q + + + E R RI L PI IDD+I +GI VV
Sbjct: 339 QAVAPIMDRPVELPGREPEHPAPASEPDASHRGRIVNLLGPSPIGIDDLIRLSGIPPAVV 398
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
VLLEL+LAGRL H G VSL
Sbjct: 399 RTVLLELELAGRLDRHGGGLVSLL 422
>gi|27380215|ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
gi|27353369|dbj|BAC50369.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 380
Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P +E+ + + + +R +I L VPI +DD++ +G
Sbjct: 299 VAPIMERPLVIPAREPDSGP-----FESDPQTHDRDQITGLLGPVPIGLDDLVRMSGASP 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
+V VLLEL+LAGRL H G VSL
Sbjct: 354 AIVRTVLLELELAGRLERHGGGLVSLL 380
>gi|83309780|ref|YP_420044.1| Rossmann fold nucleotide-binding protein [Magnetospirillum
magneticum AMB-1]
gi|82944621|dbj|BAE49485.1| Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magneticum AMB-1]
Length = 383
Score = 91.2 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + E E R R+ ++L P+ +D+II + +V
Sbjct: 298 DLLRRPLAEGKRADFRAPQPVEPDTSEMDQARARVAEALGPAPVMVDEIIRQCQLSPSMV 357
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
VLLE++LAGRL HP +VSL +
Sbjct: 358 SWVLLEIELAGRLERHPGNRVSLLV 382
>gi|90423747|ref|YP_532117.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
gi|90105761|gb|ABD87798.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
Length = 372
Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 34/80 (42%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + E +R R+ L PI +DD++ G+ V VL
Sbjct: 293 PILERPIELPSREPDEAAPIDEPGSGDRARVTSLLGPSPIGLDDLVRLAGVSPAVARTVL 352
Query: 69 LELDLAGRLCHHPEGKVSLT 88
LEL+LAGRL H G VSL
Sbjct: 353 LELELAGRLERHGGGLVSLL 372
>gi|153010990|ref|YP_001372204.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
gi|151562878|gb|ABS16375.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
Length = 388
Score = 90.1 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 2 VHPQIEQNFFSSQSDT-----NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
+ P N + + + + P T+ +R + +L VP ID ++ H
Sbjct: 294 LRPLAGPNAYQANIPAQPDLLSPALEEPESLQPFATEEQRDIVIDALGPVPTDIDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
TG++ V L+LLELDLAGRL + +V+L
Sbjct: 354 TGMDTGAVQLILLELDLAGRLHRYAGNQVALV 385
>gi|114707187|ref|ZP_01440085.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
gi|114537383|gb|EAU40509.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
Length = 377
Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P E + + + + E ER RI ++L P+ +DDI+ HTG
Sbjct: 292 LRPLDEGRRSRGNDSLDEPEVLET--FEEPAGDERDRIYEALGPTPVSVDDIVEHTGASP 349
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
V LV+LEL+LAGRL +G VS+ +
Sbjct: 350 GAVQLVVLELELAGRLERQRDGTVSILL 377
>gi|91205528|ref|YP_537883.1| putative DNA processing protein DprA [Rickettsia bellii RML369-C]
gi|91069072|gb|ABE04794.1| Putative DNA processing protein DprA [Rickettsia bellii RML369-C]
Length = 225
Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
++ D N K +N E ++ ER + + L+ VPI D + T + P++Y ++LEL+
Sbjct: 146 AELDANF-KRLNTIQVKEPSEKERAAVIELLSAVPIDFDYLQKMTELPLPIIYTIILELE 204
Query: 73 LAGRLCHHPEGKVSLTMH 90
LAG+ HP K+SL +
Sbjct: 205 LAGKAMRHPSNKISLIYN 222
>gi|92117808|ref|YP_577537.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
gi|91800702|gb|ABE63077.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
Length = 372
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P + + + E +R RI L VPI +DD+I
Sbjct: 290 VRPIMRRPIELPAEE----PGHAGPETEEPDASDRSRIVGLLGPVPIGLDDLIRMADASP 345
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
+V VLLEL+LAGRL H G VS+
Sbjct: 346 AIVRTVLLELELAGRLERHGGGLVSM 371
>gi|209884919|ref|YP_002288776.1| SMF protein [Oligotropha carboxidovorans OM5]
gi|209873115|gb|ACI92911.1| SMF protein [Oligotropha carboxidovorans OM5]
Length = 377
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 9 NFFSSQSDTNHTKNINIT-HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + ++ + E +R RI L PI IDD++ + VV V
Sbjct: 294 PIMARPIELPFEEDDSGRDESREPEDSDRARIVGLLGPSPIGIDDLVRLSDSSPAVVRTV 353
Query: 68 LLELDLAGRLCHHPEGKVSLTMH 90
LLEL+LAGRL H G VSL
Sbjct: 354 LLELELAGRLDRHGAGLVSLNWD 376
>gi|86749541|ref|YP_486037.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
gi|86572569|gb|ABD07126.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
Length = 378
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 38/84 (45%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q + + + + +R RI L P+ IDD+I +GI VV
Sbjct: 295 QAVAPILDRPIELPGREPDHPPPASDPDPSDRSRIVNLLGPSPVGIDDLIRLSGIAPAVV 354
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
VLLEL+LAGRL H G VSL
Sbjct: 355 RTVLLELELAGRLERHGGGLVSLL 378
>gi|85716403|ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A]
gi|85696760|gb|EAQ34646.1| SMF protein [Nitrobacter sp. Nb-311A]
Length = 372
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P + + + T E R RI L PI DD+I +
Sbjct: 290 VRPIMRRPVDLPAEE----PERGGTWTDEPAASARARIVALLGPAPIGPDDLIRMADVPP 345
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VV VLLEL+LAGRL H G VS+
Sbjct: 346 AVVRTVLLELELAGRLERHGGGLVSMA 372
>gi|332185639|ref|ZP_08387387.1| DNA protecting protein DprA [Sphingomonas sp. S17]
gi|332014617|gb|EGI56674.1| DNA protecting protein DprA [Sphingomonas sp. S17]
Length = 359
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ E +R R+ L V + +D++I +G +V VLLEL+
Sbjct: 284 PRMVRAPGSAYTPPPPDEANDADRRRVTDLLGPVAVTVDELIRQSGRPPAIVQTVLLELE 343
Query: 73 LAGRLCHHPEGKVSLT 88
LAGRL H G+V+L
Sbjct: 344 LAGRLERHAGGRVALA 359
>gi|67458923|ref|YP_246547.1| putative DNA processing protein DprA [Rickettsia felis URRWXCal2]
gi|67004456|gb|AAY61382.1| Putatie DNA processing protein DprA [Rickettsia felis URRWXCal2]
Length = 382
Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
D +N + E +Q ER I + L++VPI + + T + P++Y V+LEL+LAG
Sbjct: 308 DFVELGTVNTRYVKEPSQKERTAILELLSSVPIDFEFLQKETELSLPIIYTVILELELAG 367
Query: 76 RLCHHPEGKVSLT 88
+ H K+SL
Sbjct: 368 KAIRHAGNKISLV 380
>gi|158424472|ref|YP_001525764.1| SMF protein [Azorhizobium caulinodans ORS 571]
gi|158331361|dbj|BAF88846.1| SMF protein [Azorhizobium caulinodans ORS 571]
Length = 374
Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P +E+ +T + R RI + L+ VP +DD++ +G A
Sbjct: 288 LKPLLERPLPGGGDETFEAPRPPRAPEGGPDEGVRARILELLSPVPTALDDLVRLSGASA 347
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V +VLLEL+LAGRL G V+L
Sbjct: 348 AEVQVVLLELELAGRLERQRGGLVAL 373
>gi|75676200|ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255]
gi|74421070|gb|ABA05269.1| SMF protein [Nitrobacter winogradskyi Nb-255]
Length = 372
Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R RI L PI +DD+I VV VLLEL+LAGRL H G VS+
Sbjct: 318 SDRARIIALLGPAPIGLDDLIRMANAPPAVVRTVLLELELAGRLERHGGGLVSM 371
>gi|307946437|ref|ZP_07661772.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
gi|307770101|gb|EFO29327.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
Length = 378
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++E + +Q N Y E R + +L P +D++I + A V
Sbjct: 295 RLEPDLPFAQ-TINEDPTSTDAPYQEPDDSSRSAVLSALGPTPTDVDELIRFLCVPARSV 353
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
++LLEL+LAGRL H +SL
Sbjct: 354 NVILLELELAGRLERHRGNTISLL 377
>gi|254720411|ref|ZP_05182222.1| SMF protein [Brucella sp. 83/13]
gi|265985430|ref|ZP_06098165.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306839012|ref|ZP_07471833.1| DNA protecting protein DprA [Brucella sp. NF 2653]
gi|264664022|gb|EEZ34283.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306405918|gb|EFM62176.1| DNA protecting protein DprA [Brucella sp. NF 2653]
Length = 393
Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPG--DPTDDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|326410760|gb|ADZ67824.1| DNA protecting protein DprA [Brucella melitensis M28]
gi|326554052|gb|ADZ88691.1| DNA protecting protein DprA [Brucella melitensis M5-90]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|163844754|ref|YP_001622409.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
gi|163675477|gb|ABY39587.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|23500346|ref|NP_699786.1| DNA processing protein DprA [Brucella suis 1330]
gi|161620664|ref|YP_001594550.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|254702977|ref|ZP_05164805.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|260568110|ref|ZP_05838579.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261753586|ref|ZP_05997295.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|23463962|gb|AAN33791.1| DNA processing protein DprA, putative [Brucella suis 1330]
gi|161337475|gb|ABX63779.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|260154775|gb|EEW89856.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261743339|gb|EEY31265.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|294853600|ref|ZP_06794272.1| DNA processing protein [Brucella sp. NVSL 07-0026]
gi|294819255|gb|EFG36255.1| DNA processing protein [Brucella sp. NVSL 07-0026]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|306845936|ref|ZP_07478503.1| DNA protecting protein DprA [Brucella sp. BO1]
gi|306273571|gb|EFM55416.1| DNA protecting protein DprA [Brucella sp. BO1]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|304391708|ref|ZP_07373650.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
gi|303295937|gb|EFL90295.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
Length = 378
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
Q +R ++++SL++ P+ IDD+I HT + A V ++LLE+DLAG + H +VSL
Sbjct: 322 NQSDREKLQRSLSHAPVDIDDLIRHTDLPAGAVQMLLLEMDLAGTIERHSGNRVSLA 378
>gi|254695655|ref|ZP_05157483.1| SMF protein [Brucella abortus bv. 3 str. Tulya]
gi|261216055|ref|ZP_05930336.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
gi|260917662|gb|EEX84523.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L P+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPAPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|225686388|ref|YP_002734360.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|256262471|ref|ZP_05465003.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
gi|225642493|gb|ACO02406.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|263092207|gb|EEZ16504.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|17989012|ref|NP_541645.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|62317541|ref|YP_223394.1| DNA processing protein DprA [Brucella abortus bv. 1 str. 9-941]
gi|83269522|ref|YP_418813.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189022796|ref|YP_001932537.1| SMF protein [Brucella abortus S19]
gi|225629094|ref|ZP_03787127.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237817089|ref|ZP_04596081.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|254698822|ref|ZP_05160650.1| SMF protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254705901|ref|ZP_05167729.1| SMF protein [Brucella pinnipedialis M163/99/10]
gi|254711129|ref|ZP_05172940.1| SMF protein [Brucella pinnipedialis B2/94]
gi|254712412|ref|ZP_05174223.1| SMF protein [Brucella ceti M644/93/1]
gi|254715484|ref|ZP_05177295.1| SMF protein [Brucella ceti M13/05/1]
gi|254732269|ref|ZP_05190847.1| SMF protein [Brucella abortus bv. 4 str. 292]
gi|256015379|ref|YP_003105388.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|256029510|ref|ZP_05443124.1| SMF protein [Brucella pinnipedialis M292/94/1]
gi|256043499|ref|ZP_05446426.1| SMF protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256059205|ref|ZP_05449411.1| SMF protein [Brucella neotomae 5K33]
gi|256157705|ref|ZP_05455623.1| SMF protein [Brucella ceti M490/95/1]
gi|256253323|ref|ZP_05458859.1| SMF protein [Brucella ceti B1/94]
gi|256256223|ref|ZP_05461759.1| SMF protein [Brucella abortus bv. 9 str. C68]
gi|260167399|ref|ZP_05754210.1| DNA processing protein DprA, putative [Brucella sp. F5/99]
gi|260544777|ref|ZP_05820598.1| SMF protein [Brucella abortus NCTC 8038]
gi|260564694|ref|ZP_05835179.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260760064|ref|ZP_05872412.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260763303|ref|ZP_05875635.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260882451|ref|ZP_05894065.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|261217219|ref|ZP_05931500.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261220439|ref|ZP_05934720.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|261313331|ref|ZP_05952528.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261318720|ref|ZP_05957917.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261320090|ref|ZP_05959287.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261323154|ref|ZP_05962351.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261756809|ref|ZP_06000518.1| SMF protein [Brucella sp. F5/99]
gi|265986518|ref|ZP_06099075.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|265989917|ref|ZP_06102474.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str. Rev.1]
gi|265996210|ref|ZP_06108767.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|297249580|ref|ZP_06933281.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
gi|17984851|gb|AAL53909.1| smf protein [Brucella melitensis bv. 1 str. 16M]
gi|62197734|gb|AAX76033.1| hypothetical DprA, DNA processing protein [Brucella abortus bv. 1
str. 9-941]
gi|82939796|emb|CAJ12804.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189021370|gb|ACD74091.1| SMF protein [Brucella abortus S19]
gi|225615590|gb|EEH12639.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237787902|gb|EEP62118.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|255998039|gb|ACU49726.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|260098048|gb|EEW81922.1| SMF protein [Brucella abortus NCTC 8038]
gi|260152337|gb|EEW87430.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260670382|gb|EEX57322.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260673724|gb|EEX60545.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260871979|gb|EEX79048.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|260919023|gb|EEX85676.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|260922308|gb|EEX88876.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261292780|gb|EEX96276.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261297943|gb|EEY01440.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261299134|gb|EEY02631.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261302357|gb|EEY05854.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261736793|gb|EEY24789.1| SMF protein [Brucella sp. F5/99]
gi|262550507|gb|EEZ06668.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|263000586|gb|EEZ13276.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str. Rev.1]
gi|264658715|gb|EEZ28976.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|297173449|gb|EFH32813.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
Length = 393
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|254691038|ref|ZP_05154292.1| SMF protein [Brucella abortus bv. 6 str. 870]
Length = 381
Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 282 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 339
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 340 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 373
>gi|296283690|ref|ZP_06861688.1| DNA processing chain A [Citromicrobium bathyomarinum JL354]
Length = 363
Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ +S + + E V I Q L + P+ +D++I +G + V L LLEL
Sbjct: 287 APRSTFREPSAAFEAVPEDLAEAEPVEIAQLLTSAPVSVDELIRQSGAGSAAVQLALLEL 346
Query: 72 DLAGRLCHHPEGKVSLT 88
++AGRL H GKVSL+
Sbjct: 347 EIAGRLERHAGGKVSLS 363
>gi|256111481|ref|ZP_05452495.1| SMF protein [Brucella melitensis bv. 3 str. Ether]
gi|265992978|ref|ZP_06105535.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str. Ether]
gi|262763848|gb|EEZ09880.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str. Ether]
Length = 388
Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLAQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 385
>gi|157827244|ref|YP_001496308.1| putative DNA processing protein DprA [Rickettsia bellii OSU 85-389]
gi|157802548|gb|ABV79271.1| Putative DNA processing protein DprA [Rickettsia bellii OSU 85-389]
Length = 223
Score = 83.5 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
++ D N K +N E ++ ER + L+ VPI D + T + P++Y ++LEL+
Sbjct: 146 AELDANF-KRLNTIQVKEPSEKERA--IELLSAVPIDFDYLQKMTELPLPIIYTIILELE 202
Query: 73 LAGRLCHHPEGKVSLTMH 90
LAG+ HP K+SL +
Sbjct: 203 LAGKAMRHPSNKISLIYN 220
>gi|218513189|ref|ZP_03510029.1| DNA processing chain A protein [Rhizobium etli 8C-3]
Length = 352
Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S T+ P +R RI +L P+ IDDII HTG+ A
Sbjct: 281 LAPLAQFELFPSSMAEEPTRGGGAMTMP-PGDTDRNRIIDALGPTPVEIDDIIRHTGLSA 339
Query: 62 PVVYLVLLELDLA 74
VYL+LLELD++
Sbjct: 340 SAVYLILLELDIS 352
>gi|307292856|ref|ZP_07572702.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
gi|306880922|gb|EFN12138.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
Length = 360
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + +R + L + +D++I +G+ +V VLLEL+LA RL H GKVS++
Sbjct: 302 DVAERDRAAVIGLLGMAAVPVDEVIRLSGLAPAIVQTVLLELELADRLERHAGGKVSIS 360
>gi|56552090|ref|YP_162929.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543664|gb|AAV89818.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+E F S + + E +R I+ + + P+ ++++I +G+E ++
Sbjct: 304 LEPRF--SGLENGQIGYRSSPAIAEVKAKDREIIQSLIGSAPVGVNELIRQSGLENAIIQ 361
Query: 66 LVLLELDLAGRLCHHPEGKVSLTM 89
+LLE++LAGRL H G+VSL
Sbjct: 362 TILLEMELAGRLESHAGGRVSLLF 385
>gi|306841750|ref|ZP_07474436.1| DNA protecting protein DprA [Brucella sp. BO2]
gi|306288155|gb|EFM59542.1| DNA protecting protein DprA [Brucella sp. BO2]
Length = 345
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D N+ E T ER + +L VP+ +D ++
Sbjct: 246 LLPLIRPG--DPADDEPEQPNLLAQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 303
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 304 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 337
>gi|254699839|ref|ZP_05161667.1| SMF protein [Brucella suis bv. 5 str. 513]
gi|261750312|ref|ZP_05994021.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
gi|261740065|gb|EEY27991.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
Length = 393
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDL GRL +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLVGRLLRYPGNRVAIV 385
>gi|260756634|ref|ZP_05868982.1| DNA protecting protein DprA [Brucella abortus bv. 6 str. 870]
gi|260676742|gb|EEX63563.1| DNA protecting protein DprA [Brucella abortus bv. 6 str. 870]
Length = 343
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 244 LLPLIRPA--DPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 301
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAGRL +P +V++
Sbjct: 302 RHTGIETDAIQLILLELDLAGRLLRYPGNRVAIV 335
>gi|241762041|ref|ZP_04760125.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241373507|gb|EER63094.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 385
Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+E F S + + E ER I+ + + P+ ++++I +G+E ++
Sbjct: 304 LEPRF--SGLENGQIGYRSSPAIAEVKAKEREIIQSLIGSAPVGVNELIRQSGLENAIIQ 361
Query: 66 LVLLELDLAGRLCHHPEGKVSLTM 89
+LLE++LAGRL H G+VSL
Sbjct: 362 TILLEMELAGRLESHAGGRVSLLF 385
>gi|326387674|ref|ZP_08209280.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207720|gb|EGD58531.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
Length = 383
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 28 YPEYTQ--CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
P+Y I L P+ +D++I TG V + L+EL+LAGRL H G+V
Sbjct: 320 PPDYGDDPALTEEIAAMLGPAPVPVDELIRQTGAPPGSVQMALVELELAGRLHRHAGGRV 379
Query: 86 SL 87
S+
Sbjct: 380 SI 381
>gi|118590183|ref|ZP_01547586.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
gi|118437155|gb|EAV43793.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
Length = 378
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + R R+ +L P+ +D++I +A V++VLLEL+LAGRL H K
Sbjct: 314 PLSPSDPDEKLRERVLAALGPTPVDMDELIRFADGDARSVHVVLLELELAGRLERHRGNK 373
Query: 85 VSLTM 89
+S M
Sbjct: 374 ISALM 378
>gi|149186760|ref|ZP_01865071.1| DNA processing chain A [Erythrobacter sp. SD-21]
gi|148829668|gb|EDL48108.1| DNA processing chain A [Erythrobacter sp. SD-21]
Length = 372
Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S +S + E+ + E I L PI +D+++ +G A V L LLEL
Sbjct: 295 SPRSTFREPVSHFDFEPAEFAEAEPADIASLLTTAPIAVDELVRQSGKGAAAVQLALLEL 354
Query: 72 DLAGRLCHHPEGKVSLT 88
++AGRL H G+VSL+
Sbjct: 355 EIAGRLERHAAGRVSLS 371
>gi|148558431|ref|YP_001257589.1| SMF protein [Brucella ovis ATCC 25840]
gi|148369716|gb|ABQ62588.1| SMF protein [Brucella ovis ATCC 25840]
Length = 393
Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-------TQCERVRIKQSLNNVPIHIDDII 54
+ P I D ++ E T ER + +L VP+ +D ++
Sbjct: 294 LLPLIRPA--DPAGDEPKQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLV 351
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
HTGIE + L+LLELDLAG L +P +V++
Sbjct: 352 RHTGIETDAIQLILLELDLAGHLLRYPGNRVAIV 385
>gi|4511994|gb|AAD21554.1| DNA processing chain A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+E F S + + E +R I+ + + P+ ++++I +G+E ++
Sbjct: 304 LEPRF--SGLENGQIGYRSSPAIAEVKAKDREIIQSLIGSGPVGVNELIRQSGLENAIIQ 361
Query: 66 LVLLELDLAGRLCHHPEGKVSLTM 89
+LLE++LAGRL H G+VSL
Sbjct: 362 TILLEMELAGRLESHAGGRVSLLF 385
>gi|144898216|emb|CAM75080.1| DNA processing chain A [Magnetospirillum gryphiswaldense MSR-1]
Length = 377
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 25 ITHYPEYTQ--CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
IT P+ + R + +SL +P+ +D +I + A VV +VLLEL+LAGRL HP
Sbjct: 308 ITAPPDESALAHARALVLESLGPMPVAVDLLIRECQLSASVVSMVLLELELAGRLERHPG 367
Query: 83 GKVSLT 88
+V+L
Sbjct: 368 QQVALL 373
>gi|110633709|ref|YP_673917.1| DNA protecting protein DprA [Mesorhizobium sp. BNC1]
gi|110284693|gb|ABG62752.1| DNA protecting protein DprA [Chelativorans sp. BNC1]
Length = 378
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
S +D T +++ T P+ + ER I Q+L P+ +D+IIHHTG+ A V LVLL
Sbjct: 298 LPPSTADLEETPDLSAT--PDPGENERSLILQALGAAPVAVDEIIHHTGLPAAQVLLVLL 355
Query: 70 ELDLAGRLCHHPEGKVSLT 88
ELDLAGRL H GKVSL
Sbjct: 356 ELDLAGRLERHAGGKVSLL 374
>gi|260752380|ref|YP_003225273.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258551743|gb|ACV74689.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 385
Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+E F S + + E +R I+ + + + ++++I +G+E ++
Sbjct: 304 LEPRF--SGLENGQIGYRSSPAIAEVKAKDREIIQSLIGSASVGVNELIRQSGLENAIIQ 361
Query: 66 LVLLELDLAGRLCHHPEGKVSLTM 89
+LLE++LAGRL H G+VSL
Sbjct: 362 TILLEMELAGRLESHAGGRVSLLF 385
>gi|170746908|ref|YP_001753168.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
gi|170653430|gb|ACB22485.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
Length = 403
Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
++ + PE +R RI L P+ D++ G+ A +V VL
Sbjct: 323 PLPQRRAGASAPCPARDDRPPEPQD-DRARIVALLGPSPVGTDELARSAGVGARIVQSVL 381
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+L GR+ H G VSL
Sbjct: 382 LELELDGRIERHGSGTVSL 400
>gi|254562490|ref|YP_003069585.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
gi|254269768|emb|CAX25740.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
Length = 397
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
+I + ++ + PE +R R+ L+ P+ D++ TG+
Sbjct: 317 RAEIAPPLLPAAAE-------PVEAPPEPRD-DRARLIACLSPTPVGTDELARSTGLSVR 368
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
+V LLEL+L GR+ H G VSL
Sbjct: 369 IVQTTLLELELDGRIERHGSGTVSLV 394
>gi|163852730|ref|YP_001640773.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
gi|163664335|gb|ABY31702.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
Length = 397
Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
I PE +R R+ L+ P+ D++ TG+ +V LLEL+L GR+ H G
Sbjct: 331 PIEAPPEPRD-DRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIERHGSG 389
Query: 84 KVSLT 88
VSL
Sbjct: 390 TVSLV 394
>gi|218531570|ref|YP_002422386.1| DNA protecting protein DprA [Methylobacterium chloromethanicum CM4]
gi|218523873|gb|ACK84458.1| DNA protecting protein DprA [Methylobacterium chloromethanicum CM4]
Length = 397
Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ PE +R R+ L+ P+ D++ TG+ +V LLEL+L GR+ H G
Sbjct: 331 PVEAPPEPRD-DRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIERHGSG 389
Query: 84 KVSLT 88
VSL
Sbjct: 390 TVSLV 394
>gi|154247839|ref|YP_001418797.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
gi|154161924|gb|ABS69140.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
Length = 378
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
I + R R+ L VP IDD++ +G V +VLLELDLAGRL G
Sbjct: 314 PIMEPAMPGEDARARVVGLLGPVPTLIDDLVRLSGCSVAEVQIVLLELDLAGRLDRPGTG 373
Query: 84 KVSL 87
+V+L
Sbjct: 374 RVAL 377
>gi|188582755|ref|YP_001926200.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
gi|179346253|gb|ACB81665.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
Length = 397
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + E +R R+ L+ P+ D++ TG+ VV LLEL+L GR+
Sbjct: 326 PGADEPVETGSEPED-DRTRLIARLSPTPVATDELARSTGLPVRVVQTTLLELELDGRIE 384
Query: 79 HHPEGKVSLT 88
H G VSL
Sbjct: 385 RHGSGTVSLV 394
>gi|240140065|ref|YP_002964542.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
gi|240010039|gb|ACS41265.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
Length = 397
Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + PE +R R+ L+ P+ D++ TG+ +V LLEL
Sbjct: 319 ETTLPLLPAAAEPVEAPPEPRD-DRERLIACLSPAPVGTDELARSTGLSVRIVQTTLLEL 377
Query: 72 DLAGRLCHHPEGKVSLT 88
+L G++ H G VSL
Sbjct: 378 ELDGQIERHGSGTVSLV 394
>gi|85373787|ref|YP_457849.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
gi|84786870|gb|ABC63052.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
Length = 367
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 12 SSQSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
S +S + PE + E + L P+ +D++I +G A V L LLE
Sbjct: 289 SPRSSFREAAALEFDPAPEELAEAEPADVAGLLTTAPVAVDELIRQSGEPAAAVQLALLE 348
Query: 71 LDLAGRLCHHPEGKVS 86
L+++G+L H G+VS
Sbjct: 349 LEISGQLTRHAGGRVS 364
>gi|323136208|ref|ZP_08071290.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
gi|322398282|gb|EFY00802.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
Length = 424
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQ-------SLNNVPIHIDDIIHHTGI 59
E+ S + T P+ + R+ L P+ +D++I G+
Sbjct: 331 EEGPPSPLFAAPEPELGPETASPDPSAPVHGRVADPHEVVLSLLGPSPVAVDELIRIAGL 390
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
A V+ VL+ELDLAGRL H VSL +
Sbjct: 391 PARDVHGVLVELDLAGRLERHGTNAVSLVYN 421
>gi|148256077|ref|YP_001240662.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
gi|146408250|gb|ABQ36756.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
Length = 372
Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q + ++ P +R +I L P+ IDD+I +G+ V+
Sbjct: 289 QAVGPIMERPPSASLRESDEELFAPAPESHDRDQIIALLGPTPVSIDDLIRISGLSPAVL 348
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
+VLLEL+LAGRL H G VSL
Sbjct: 349 RVVLLELELAGRLERHGGGMVSLA 372
>gi|154253273|ref|YP_001414097.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
gi|154157223|gb|ABS64440.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
Length = 372
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R RI +L P +D+I+ P+V VLLEL+LAGRL P +VSL
Sbjct: 316 RTRILSALGPTPTPLDEIVRQASASVPLVRAVLLELELAGRLHRDPGDRVSLL 368
>gi|323140195|ref|ZP_08075173.1| SMF family protein [Methylocystis sp. ATCC 49242]
gi|322394547|gb|EFX97170.1| SMF family protein [Methylocystis sp. ATCC 49242]
Length = 207
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQ-------SLNNVPIHIDDIIHHTGI 59
E+ S + T P+ + R+ L P+ +D++I G+
Sbjct: 114 EEGPPSPLFAAPEPELGPETASPDPSAPVHGRVADPHEVVLSLLGPSPVAVDELIRIAGL 173
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
A V+ VL+ELDLAGRL H VSL +
Sbjct: 174 PARDVHGVLVELDLAGRLERHGTNAVSLVYN 204
>gi|87199818|ref|YP_497075.1| DNA processing protein DprA, putative [Novosphingobium
aromaticivorans DSM 12444]
gi|87135499|gb|ABD26241.1| DNA protecting protein DprA [Novosphingobium aromaticivorans DSM
12444]
Length = 375
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIE 60
Q + + P+ + + + L PI +D++I +
Sbjct: 287 QSPDDVVELLVGFEGQPRSTVREVPDDFASDSCDEQADVADLLTTAPIGVDELIRQSRAS 346
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
A V + L+EL+LAGRL H G+VSL
Sbjct: 347 AGAVQMALIELELAGRLLRHAAGRVSL 373
>gi|83594524|ref|YP_428276.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
gi|83577438|gb|ABC23989.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
Length = 374
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P E + + + + + T R R+ ++L P+ +D++I +
Sbjct: 292 IARPMAE-DKPQNYASAPPSPIADSTI-----DAARPRVIEALGMSPVGVDEVIRLCTLP 345
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
VV +VLLEL+LAGRL +V L
Sbjct: 346 PAVVAVVLLELELAGRLDRLVGNRVCL 372
>gi|288958693|ref|YP_003449034.1| DNA processing protein [Azospirillum sp. B510]
gi|288911001|dbj|BAI72490.1| DNA processing protein [Azospirillum sp. B510]
Length = 378
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
+ D E + + R + ++L + P+ ID+++ + APV
Sbjct: 294 PTLAERRRDLFSAAIHPPGKAAEPDESDLARARALVLENLGHSPVTIDELVRGCQLSAPV 353
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLT 88
V V+LEL+LAGR+ P +VSL
Sbjct: 354 VLTVVLELELAGRVQRLPGHQVSLA 378
>gi|294084185|ref|YP_003550943.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663758|gb|ADE38859.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 367
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 14 QSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + + PE R I + + P+ IDDIIH + A +V+ LL
Sbjct: 284 TASQPPPPPVQDANAPEPNSNAVNKCRNIITEGVGPDPVAIDDIIHLCDMPASIVWAALL 343
Query: 70 ELDLAGRLCHHPEGKVS 86
EL+LAG + H +VS
Sbjct: 344 ELELAGVILRHHGNRVS 360
>gi|296445900|ref|ZP_06887851.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
gi|296256568|gb|EFH03644.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
Length = 412
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L P+ ID++I G+ A V+ LLELDLAGR+ H VSL
Sbjct: 361 AHVVALLGPAPVTIDELIRAAGLPAREVHAALLELDLAGRVARHGANLVSLV 412
>gi|163792865|ref|ZP_02186841.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
gi|159181511|gb|EDP66023.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
Length = 379
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ H E R + L P+ +D++I + AP+V LLE +LAG + +P
Sbjct: 310 PVAHPLESDDTTRRTVLDVLGPEPVPVDELIRGCQLSAPIVATALLEAELAGLVDRYPGN 369
Query: 84 KVSLTMHLPS 93
+V+ M P+
Sbjct: 370 QVARRMSTPA 379
>gi|121602381|ref|YP_989130.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
gi|120614558|gb|ABM45159.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
Length = 396
Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E+++ NH+ T P ER I +L+ PI +D + H+G+ +YL
Sbjct: 304 EESYPIQLQQENHSLPKPSTKAPFADDTERAAILSALSTTPIDLDTLSSHSGVPLQNLYL 363
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
+L+ELDLAG+L H G VSL+ P PQ
Sbjct: 364 LLIELDLAGKLTRHSGGYVSLSTENP-PQ 391
>gi|217979954|ref|YP_002364101.1| DNA protecting protein DprA [Methylocella silvestris BL2]
gi|217505330|gb|ACK52739.1| DNA protecting protein DprA [Methylocella silvestris BL2]
Length = 422
Score = 67.7 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 9 NFFSSQSDTNHTKNINITH-YPEYT-QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
S ++ + P + + R+ L P+ +D+++ + A V
Sbjct: 341 PASSRRAALPPPADEPPREDAPAPSREAAFARVIALLGPSPVSVDELVRASEAPAREVRA 400
Query: 67 VLLELDLAGRLCHHPEGKVS 86
+L EL+L GRL H VS
Sbjct: 401 ILFELELQGRLERHGADLVS 420
>gi|197104784|ref|YP_002130161.1| dprA protein [Phenylobacterium zucineum HLK1]
gi|196478204|gb|ACG77732.1| dprA protein [Phenylobacterium zucineum HLK1]
Length = 362
Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
E R R+ L+ P+ D+++ TG AP V+ L+EL LAGR
Sbjct: 292 EPERPRFAGAPPVEPDDALRERVAALLSPTPVSRDELVRATGAPAPAVFAALVELSLAGR 351
Query: 77 LCHHPEGKVS 86
P G VS
Sbjct: 352 ADLLPGGMVS 361
>gi|260431072|ref|ZP_05785043.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414900|gb|EEX08159.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 378
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P + F++Q P+ + I L P+ D +I + A
Sbjct: 296 PPQAPDLFNAQVSPPPAPG---DMRPQPAVDLQATILSRLGPSPVAEDQLIRDVQVPASA 352
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLTM 89
V VL+EL+L GR+ P G +SL +
Sbjct: 353 VGPVLVELELQGRIQRQPGGLLSLAV 378
>gi|298291505|ref|YP_003693444.1| DNA protecting protein DprA [Starkeya novella DSM 506]
gi|296928016|gb|ADH88825.1| DNA protecting protein DprA [Starkeya novella DSM 506]
Length = 369
Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + PE ++ R + L VP+ +DD++ +G + ++LLEL+LAGRL H
Sbjct: 302 EEADAMDAPEPSEDARTHVLALLGPVPLPVDDLVVLSGASVGEIQILLLELELAGRLERH 361
Query: 81 PEGKVSL 87
P G VSL
Sbjct: 362 PGGAVSL 368
>gi|300022164|ref|YP_003754775.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
gi|299523985|gb|ADJ22454.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
Length = 399
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 2 VHPQIEQNFFSSQ------SDTNHTKNINI--------THYPEYTQCERVRIKQSLNNVP 47
+ P I Q F + + T + + + +L+ P
Sbjct: 297 LQPIIGQQAFRETVGETDFASASETPRTSPHPISPTVAVRRKPDGLADISAVLAALSPAP 356
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I +D I TG+ V + LLELDLAGR+ H VSL
Sbjct: 357 IAVDAIARGTGLAIQSVQIALLELDLAGRIERHGLSLVSL 396
>gi|148556726|ref|YP_001264308.1| DNA protecting protein DprA [Sphingomonas wittichii RW1]
gi|148501916|gb|ABQ70170.1| DNA protecting protein DprA [Sphingomonas wittichii RW1]
Length = 592
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCE---RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
S + N P + + R + L VP+ +D++I +G+ A +V +VL
Sbjct: 511 SPIAGVAARPADNFASAPAPAEADEPARAALTGLLGPVPLAVDELIRQSGVSAAMVQMVL 570
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+L GRL H G+VSL
Sbjct: 571 LELELGGRLDRHAGGRVSL 589
>gi|85708361|ref|ZP_01039427.1| DNA processing chain A [Erythrobacter sp. NAP1]
gi|85689895|gb|EAQ29898.1| DNA processing chain A [Erythrobacter sp. NAP1]
Length = 384
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E I + L PI +D++I +G + V++ LLEL+L G + G V LT
Sbjct: 331 EGEAITRLLTTAPIGVDELIRQSGADPAAVHMTLLELELGGEVERGDGGMVRLT 384
>gi|182680321|ref|YP_001834467.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636204|gb|ACB96978.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica ATCC
9039]
Length = 429
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ RI L P+ +D++ + VLL L+L GRL H VSL
Sbjct: 374 KERIIALLGPAPVSVDELARAAASPPGELQAVLLILELEGRLTRHGASLVSLL 426
>gi|294011703|ref|YP_003545163.1| DNA processing protein [Sphingobium japonicum UT26S]
gi|292675033|dbj|BAI96551.1| DNA processing protein [Sphingobium japonicum UT26S]
Length = 360
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + ER + L P+ +D++I +G+ VV VLLEL+LA RL H GKVSL+
Sbjct: 302 DVAERERASVVALLGPAPVPVDELIRLSGLGPAVVQTVLLELELAARLERHAGGKVSLS 360
>gi|103486697|ref|YP_616258.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
gi|98976774|gb|ABF52925.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
Length = 360
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E ER + L P+ +D+++ +G +A V LVLLEL+LAGR+ H K+SL
Sbjct: 302 EPANDERQALVDLLGPTPVTVDELVRQSGQDAAAVQLVLLELELAGRIERHAGAKISLL 360
>gi|240850661|ref|YP_002972061.1| DNA processing chain A [Bartonella grahamii as4aup]
gi|240267784|gb|ACS51372.1| DNA processing chain A [Bartonella grahamii as4aup]
Length = 404
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 4 PQIEQNFFSS-------QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
P + NFF + + N N + R + +L+ PI +D + H
Sbjct: 302 PNSQLNFFEEPSSLQLKKENFNLADEKNSSLSLAGDDAARAAVLSALSTTPIDLDTLSIH 361
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT-MHLPS-PQ 95
+G+ P +YL+L+ELDLAG+L H G VSL+ + LP PQ
Sbjct: 362 SGVSLPALYLLLVELDLAGKLIRHSGGCVSLSNLDLPQEPQ 402
>gi|326403290|ref|YP_004283371.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
gi|325050151|dbj|BAJ80489.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
Length = 373
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 10 FFSSQSDTNH-TKNINITHYPEYTQC-ERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVY 65
F ++ PE +R R I + L+ P+ +D++ H +
Sbjct: 288 FPDARIAAPPPGLGEPPDAAPETGDELDRARSEIPRLLSASPVSVDELARHCQFSTSALT 347
Query: 66 LVLLELDLAGRLCHHPEGKVSLT 88
VL EL+LAGR+ P +V L
Sbjct: 348 AVLTELELAGRIETLPGNRVCLL 370
>gi|148259743|ref|YP_001233870.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
gi|146401424|gb|ABQ29951.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
Length = 373
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 10 FFSSQSDTNH-TKNINITHYPEYTQC-ERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVY 65
F ++ PE +R R I + L+ P+ +D++ H +
Sbjct: 288 FPDARIAAPPPGLGEPPDAAPETGDELDRARSEIPRLLSASPVSVDELARHCQFSTSALT 347
Query: 66 LVLLELDLAGRLCHHPEGKVSLT 88
VL EL+LAGR+ P +V L
Sbjct: 348 AVLTELELAGRIETLPGNRVCLL 370
>gi|159043687|ref|YP_001532481.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
gi|157911447|gb|ABV92880.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
Length = 379
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R R+ +L P+ D +I G+ A V L+EL+++G++ P G +SL
Sbjct: 320 PSADELRGRVLATLGATPLPEDQVIRALGLPAAQVNAALVELEMSGQITRAPGGMLSL 377
>gi|94497602|ref|ZP_01304171.1| DNA processing chain A [Sphingomonas sp. SKA58]
gi|94423019|gb|EAT08051.1| DNA processing chain A [Sphingomonas sp. SKA58]
Length = 360
Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ Q ER + L +D++I +G+ VV VLLEL+LAG L H KVSL
Sbjct: 302 DVAQSERAAVIGLLGPAAAPVDELIRLSGLSPAVVQTVLLELELAGALERHAGAKVSL 359
>gi|114327469|ref|YP_744626.1| DNA processing protein [Granulibacter bethesdensis CGDNIH1]
gi|114315643|gb|ABI61703.1| DNA processing protein [Granulibacter bethesdensis CGDNIH1]
Length = 378
Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINI-THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ F S K T + +I L P+ +DD+I +
Sbjct: 289 PQTPDLFLSPSGPAPSAKQKPGGAFTVSETNGLKEKILLLLGPDPVAVDDLIRRCQLSPS 348
Query: 63 VVYLVLLELDLAGRLCHHPEGKVS 86
V LLE++L+ + P +V+
Sbjct: 349 EVVAALLEMELSAHVVSLPGNRVA 372
>gi|329114375|ref|ZP_08243137.1| Protein Smf [Acetobacter pomorum DM001]
gi|326696451|gb|EGE48130.1| Protein Smf [Acetobacter pomorum DM001]
Length = 412
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 7 EQNFFSSQSDTNHTKNI---NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E FF+S + + + I P Q R + L+ PI +DD+I A
Sbjct: 320 EPAFFTSPQNVDEKEPIALKPHFSAPSTAQDVRENLLSLLSFTPIAVDDLIRRCQFSASA 379
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLT 88
V + L EL+L+G + + G V L
Sbjct: 380 VLVALTELELSGCVSTYSGGMVGLA 404
>gi|220923237|ref|YP_002498539.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
gi|219947844|gb|ACL58236.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
Length = 391
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 7 EQNFFSSQSDTNHTK-NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
E +FF + P +R R+ L P+ ID + G+ A V
Sbjct: 310 ETDFFGDGAAPAPVPLGFEEAEAPIPG-SDRARLLALLGPAPVAIDALARQAGLPARAVQ 368
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
+LLEL+L G + H G VSL
Sbjct: 369 GLLLELELDGLVARHGGGTVSL 390
>gi|83945523|ref|ZP_00957870.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
gi|83851099|gb|EAP88957.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
Length = 372
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P++E+ S +D + + E R RI L+ P+ D++ T A
Sbjct: 291 RPKLEEP---SGADFE-DEFEDARALDEAVSDIRERIAGLLSPTPVSRDELARLTRAPAR 346
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
VV L+EL+LAGR P G V
Sbjct: 347 VVLAALVELELAGRCEIWPNGMV 369
>gi|254488483|ref|ZP_05101688.1| DNA processing protein [Roseobacter sp. GAI101]
gi|214045352|gb|EEB85990.1| DNA processing protein [Roseobacter sp. GAI101]
Length = 347
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 25 ITHYPEYTQCERV------RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
P T+ R +I L PI D +I A V VL++L+L G++
Sbjct: 277 PESAPAPTRSLRETAALHLQILSRLGPSPIAEDQLIRDLQASAAKVAPVLIDLELEGQIL 336
Query: 79 HHPEGKVS 86
P G VS
Sbjct: 337 RQPGGLVS 344
>gi|217968559|ref|YP_002353793.1| DNA protecting protein DprA [Thauera sp. MZ1T]
gi|217505886|gb|ACK52897.1| DNA protecting protein DprA [Thauera sp. MZ1T]
Length = 387
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
ER R+ +++ + P+ +D I G+ +Y +LL L+L GRL P G+
Sbjct: 331 DGERTRVLEAIGHDPVDLDTIAARCGLTVDALYAILLPLELEGRLAKLPGGR 382
>gi|170742467|ref|YP_001771122.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
gi|168196741|gb|ACA18688.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
Length = 391
Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E +FF+ + + + +R R+ L P+ +D + G+ A V
Sbjct: 310 ETDFFAQDPEPAAPEGLYEEAEEPPPPDDRARLLALLGPSPVAVDALGRQAGLSARSVQG 369
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LLEL+L G + H G VSL
Sbjct: 370 LLLELELDGLVTRHGGGSVSL 390
>gi|209543807|ref|YP_002276036.1| DNA protecting protein DprA [Gluconacetobacter diazotrophicus PAl
5]
gi|209531484|gb|ACI51421.1| DNA protecting protein DprA [Gluconacetobacter diazotrophicus PAl
5]
Length = 395
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEY------TQCE-RVRIKQSLNNVPIHIDDIIH 55
P+ Q P Q E R I L+ P +DD++
Sbjct: 292 QPESRQPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVR 351
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ VL EL+LAG + P G V L
Sbjct: 352 RCQFSTSAILTVLSELELAGNIETLPGGSVVL 383
>gi|162145885|ref|YP_001600343.1| DNA processing chain A [Gluconacetobacter diazotrophicus PAl 5]
gi|161784459|emb|CAP53989.1| putative DNA processing chain A [Gluconacetobacter diazotrophicus
PAl 5]
Length = 395
Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHY----PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
Q E +Q+ P R I L+ P +DD++
Sbjct: 297 QPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVRRCQFS 356
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
+ VL EL+LAG + P G V L
Sbjct: 357 TSAILTVLSELELAGNIETLPGGSVVL 383
>gi|254474217|ref|ZP_05087608.1| DNA processing chain A [Pseudovibrio sp. JE062]
gi|211956747|gb|EEA91956.1| DNA processing chain A [Pseudovibrio sp. JE062]
Length = 397
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPE---------YTQCERVRIKQSLNNVPIHID 51
++ P+I + Q T N P+ + +R+ + +L+ PI D
Sbjct: 296 IMEPKISMSLPLHQGIEEPTSNWPKLDSPDTNSPSPPLNANEQDRLAVIDALSETPIDQD 355
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+++ TG+ + L+LLE++LAGRL H K+S+
Sbjct: 356 ELLRFTGVSLQTLQLILLEIELAGRLERHKPNKLSM 391
>gi|163868294|ref|YP_001609503.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
gi|161017950|emb|CAK01508.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
Length = 404
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 4 PQIEQNFFSS-------QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
P + NFF + + N N R + +L+ PI +D + H
Sbjct: 302 PNSQLNFFEEPSSLKIEKENFNSAYEKNAHPSLTGDDAARAAVLSALSTTPIDLDTLSIH 361
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+G+ P +YL+L+EL+LAG+L H G VSL+
Sbjct: 362 SGVSLPTLYLLLVELELAGKLIRHSGGCVSLS 393
>gi|148284625|ref|YP_001248715.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
gi|146740064|emb|CAM80189.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 386
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q + K+ T +R +K L++VP+ I+ I++ T + +V +++LEL+L
Sbjct: 306 QENFTQYKDHGSYQSTTITDDQRTIVKNILSSVPLDIEVIVNQTKLPMNIVNVIILELEL 365
Query: 74 AGRLCHHPEGKVSLTMH 90
AG + K+ + +
Sbjct: 366 AGIVARCLGNKIVILYN 382
>gi|167645473|ref|YP_001683136.1| DNA protecting protein DprA [Caulobacter sp. K31]
gi|167347903|gb|ABZ70638.1| DNA protecting protein DprA [Caulobacter sp. K31]
Length = 366
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCE------RVRIKQSLNNVPIHIDDIIHHTGIEA 61
++ S S H + + E E R + + L+ P+ DD++ T
Sbjct: 280 EDVLRSLSGQAHLRERERPYAAEDDDAEIDHEALREEVARLLSPTPVSRDDLVRATRAPT 339
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVS 86
V L+EL LA R+ P G V+
Sbjct: 340 SAVMAALVELALAERVELLPGGMVA 364
>gi|189183183|ref|YP_001936968.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
gi|189179954|dbj|BAG39734.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
Length = 386
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q + K+ T +R +K L++VP+ I+ I++ T + +V +++LEL+L
Sbjct: 306 QENFTQYKDHGSYQSTTITDDQRTIVKNILSSVPLDIEVIVNQTKLPMNIVNVIILELEL 365
Query: 74 AGRLCHHPEGKVSLTMH 90
AG + K+ + +
Sbjct: 366 AGIVARCLGNKIVILYN 382
>gi|295690151|ref|YP_003593844.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
gi|295432054|gb|ADG11226.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
Length = 365
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
++ S + + + + E R R+ L+ P+ +D+I
Sbjct: 280 EDVLRSLAGEARLRERDRAYEAEPPSDLDPDALRERVAALLSPTPVPRNDLIRAVAAPTS 339
Query: 63 VVYLVLLELDLAGRLCHHPEGKVS 86
V L+EL LAGR G V+
Sbjct: 340 AVMAALVELSLAGRAEFLDGGLVA 363
>gi|83950056|ref|ZP_00958789.1| DNA processing protein DprA, putative [Roseovarius nubinhibens ISM]
gi|83837955|gb|EAP77251.1| DNA processing protein DprA, putative [Roseovarius nubinhibens ISM]
Length = 362
Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 24 NITHYPEYTQCERV------RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+I P + R +I L P+ D +I G+ A V L++L+LAGR+
Sbjct: 291 DIPAAPPEKRSLRDTAQLHSQILNRLGPSPLPEDQLIRDMGLGANAVAPALVDLELAGRI 350
Query: 78 CHHPEGKVS 86
G +S
Sbjct: 351 QRQAGGLLS 359
>gi|126729116|ref|ZP_01744930.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
gi|126710106|gb|EBA09158.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
Length = 372
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERV---------RIKQSLNNVPIHIDD 52
+ P ++ Q + + R RI L P+ D
Sbjct: 275 LPPLEKEGPAQPQLGLPDPEGAAVDAVKAPEPETRTLRQTADLHTRILDRLGPSPLAEDQ 334
Query: 53 IIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+I G + V L +L+L GR+ P G +SL
Sbjct: 335 LIRDLGAASSHVSPALTDLELEGRIRRQPGGFLSLV 370
>gi|254511723|ref|ZP_05123790.1| DNA protecting protein DprA [Rhodobacteraceae bacterium KLH11]
gi|221535434|gb|EEE38422.1| DNA protecting protein DprA [Rhodobacteraceae bacterium KLH11]
Length = 351
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 8 QNFFSSQSDTNHTK-NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ + + I L PI D +I A V
Sbjct: 269 PPISPKSVEQPPLPFATDTSKAKIPPNTLHQAILTRLGPSPIAEDQLIRDISASAGEVGP 328
Query: 67 VLLELDLAGRLCHHPEGKVSLT 88
VL++L+L G++ P G +SL+
Sbjct: 329 VLVDLELDGKILRQPGGLLSLS 350
>gi|83954521|ref|ZP_00963232.1| DNA processing protein DprA, putative [Sulfitobacter sp. NAS-14.1]
gi|83840805|gb|EAP79976.1| DNA processing protein DprA, putative [Sulfitobacter sp. NAS-14.1]
Length = 365
Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 16 DTNHTKNINITHYPEYTQ---CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ I+ P + I L P+ D ++ + + VL+EL+
Sbjct: 289 AAAASPPISQAAAPAPQRDIAALHTDILSRLGPSPVAEDQLLRDLAVAPGIATPVLVELE 348
Query: 73 LAGRLCHHPEGKVS 86
L G + H G VS
Sbjct: 349 LNGHILRHAGGLVS 362
>gi|83943948|ref|ZP_00956405.1| DNA processing protein DprA, putative [Sulfitobacter sp. EE-36]
gi|83845195|gb|EAP83075.1| DNA processing protein DprA, putative [Sulfitobacter sp. EE-36]
Length = 365
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L P+ D ++ + + VL+EL+L G + H G VS
Sbjct: 313 TDILSRLGPSPVAEDQLLRDLAVAPGIATPVLVELELNGHILRHAGGLVS 362
>gi|209964829|ref|YP_002297744.1| DNA processing protein DprA, putative [Rhodospirillum centenum SW]
gi|209958295|gb|ACI98931.1| DNA processing protein DprA, putative [Rhodospirillum centenum SW]
Length = 381
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ R + ++L+ P+ +D+++ + A VV VLLEL+LAGR+ HP G++SL
Sbjct: 326 ERARALVLEALSPTPVLVDEVVRGCQLSAGVVLTVLLELELAGRVQRHPGGQISL 380
>gi|49474246|ref|YP_032288.1| DNA processing chain A [Bartonella quintana str. Toulouse]
gi|49239750|emb|CAF26132.1| DNA processing chain A [Bartonella quintana str. Toulouse]
Length = 410
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 4 PQIEQNFFS-SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQI++ FS S +TN + +I ER + +L+ PI +D + H+G+
Sbjct: 321 PQIKKESFSLSNRETNSSSSI-------GDDSERAALLSALSTTPIDLDTLSTHSGVPLQ 373
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
+YL+L+EL+LAG+L H G VSL+
Sbjct: 374 NLYLLLVELELAGKLIRHSGGYVSLS 399
>gi|56697910|ref|YP_168281.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
gi|56679647|gb|AAV96313.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
Length = 382
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ PQ + + D T I L P+ D +I
Sbjct: 298 LTAPQPQPDL----CDLMQQPAPPAKRSLRETVALHSLILDRLGPSPVAEDQLIRDLAAS 353
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
V VL++L+L GR+ G +S
Sbjct: 354 PGEVAPVLVDLELEGRINRQAGGLLS 379
>gi|85705143|ref|ZP_01036243.1| DNA processing protein DprA, putative [Roseovarius sp. 217]
gi|85670465|gb|EAQ25326.1| DNA processing protein DprA, putative [Roseovarius sp. 217]
Length = 342
Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + Q++ T +I L P+ D +I A V
Sbjct: 261 KPAPAPQTEMPLDAAPVPPRSLRETASLHAQILNRLGPSPLAEDQLIRDLSTPAHKVAPA 320
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
LL+L+L GR+ HP G ++L
Sbjct: 321 LLDLELDGRITRHPGGLLALA 341
>gi|149915652|ref|ZP_01904178.1| DNA processing protein DprA, putative [Roseobacter sp. AzwK-3b]
gi|149810544|gb|EDM70387.1| DNA processing protein DprA, putative [Roseobacter sp. AzwK-3b]
Length = 357
Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
RI L P+ D +I G A V L +L+L GR+ P G +SL
Sbjct: 306 SRILSRLGPSPLAEDQLIRDLGAPAGQVTPALTDLELDGRIRRQPGGLLSLV 357
>gi|163745856|ref|ZP_02153215.1| DNA processing protein DprA, putative [Oceanibulbus indolifex
HEL-45]
gi|161380601|gb|EDQ05011.1| DNA processing protein DprA, putative [Oceanibulbus indolifex
HEL-45]
Length = 349
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCER-----------VRIKQSLNNVPIH 49
++ EQ+ + T P + RI L PI
Sbjct: 250 VLEILPEQDRQKDNAPAPVKPASGPTSAPPSRATQPRENTGSIAKLHARILSRLGPAPIA 309
Query: 50 IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
D +I + + V LL+L++ G++ P G +S
Sbjct: 310 EDQLIRDLQVPSTAVAPALLDLEMDGQIERQPGGLLS 346
>gi|221638586|ref|YP_002524848.1| DNA protecting protein DprA [Rhodobacter sphaeroides KD131]
gi|221159367|gb|ACM00347.1| DNA protecting protein DprA [Rhodobacter sphaeroides KD131]
Length = 372
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVS 86
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVS 369
>gi|77462726|ref|YP_352230.1| hypothetical protein RSP_2177 [Rhodobacter sphaeroides 2.4.1]
gi|77387144|gb|ABA78329.1| hypothetical protein RSP_2177 [Rhodobacter sphaeroides 2.4.1]
Length = 372
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVS 86
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVS 369
>gi|332557608|ref|ZP_08411930.1| hypothetical protein RSWS8N_01115 [Rhodobacter sphaeroides WS8N]
gi|332275320|gb|EGJ20635.1| hypothetical protein RSWS8N_01115 [Rhodobacter sphaeroides WS8N]
Length = 372
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVS 86
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVS 369
>gi|296535601|ref|ZP_06897782.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
gi|296264117|gb|EFH10561.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
Length = 364
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ + P + + ++ + + P+ +D+++ + A V
Sbjct: 280 PSAPRRTAGAARRPAPVEAALPLASPLDEAGQLLDLIGSSPVVVDELLRRCHLSAAAVQA 339
Query: 67 VLLELDLAGRLCHHPEGKV 85
+LL+L+L GR+ P +V
Sbjct: 340 LLLDLELEGRIQALPGNRV 358
>gi|319898957|ref|YP_004159050.1| DNA processing chain A [Bartonella clarridgeiae 73]
gi|319402921|emb|CBI76472.1| DNA processing chain A [Bartonella clarridgeiae 73]
Length = 383
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q K I ER + +L++ PI +D + ++G+ +YL+L+ELDL
Sbjct: 298 QEKARSPKRITNETPLIRDDIERAAVLAALSSTPIDLDTLSIYSGVPLQKLYLLLIELDL 357
Query: 74 AGRLCHHPEGKVSL-TMHLPS-PQ 95
AG+L H G VSL ++ LP PQ
Sbjct: 358 AGKLIRHSGGYVSLSSLDLPQEPQ 381
>gi|126461618|ref|YP_001042732.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17029]
gi|126103282|gb|ABN75960.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17029]
Length = 372
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVS 86
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVS 369
>gi|330827123|ref|YP_004390426.1| DNA protecting protein DprA [Alicycliphilus denitrificans K601]
gi|329312495|gb|AEB86910.1| DNA protecting protein DprA [Alicycliphilus denitrificans K601]
Length = 379
Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + P + +L P+ +D ++ TG+ A + + LLEL+
Sbjct: 301 EELRLPAAGQAPESDAPPPVAPTHQEVLDALGFDPLGLDALVARTGLPAATLQVRLLELE 360
Query: 73 LAGRLCHHPEGK 84
L G++ P G
Sbjct: 361 LEGQVARLPGGM 372
>gi|49475582|ref|YP_033623.1| DNA processing chain A [Bartonella henselae str. Houston-1]
gi|49238389|emb|CAF27616.1| DNA processing chain A [Bartonella henselae str. Houston-1]
Length = 410
Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 QNFFSSQSD---TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ S Q + N + + ER + +L+ PI +D + ++G+ +
Sbjct: 316 EELPSLQLEKDCFNSSDKKTKITSFVGDERERRAVLSALSTTPIDLDTLSTNSGVSLSNL 375
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
YL+L+EL+LAG+L H G VSL+
Sbjct: 376 YLLLVELELAGKLIRHSGGYVSLS 399
>gi|258541849|ref|YP_003187282.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256632927|dbj|BAH98902.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256635984|dbj|BAI01953.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-03]
gi|256639039|dbj|BAI05001.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-07]
gi|256642093|dbj|BAI08048.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-22]
gi|256645148|dbj|BAI11096.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-26]
gi|256648203|dbj|BAI14144.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-32]
gi|256651256|dbj|BAI17190.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654247|dbj|BAI20174.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-12]
Length = 214
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
E+ FF+S N + I P ++ Q R + L+ PI +DD+I A
Sbjct: 122 ERAFFAS--PQNVDEKEPIALKPHFSAASTAQDVRENLLSLLSFTPIAVDDLIRRCQFSA 179
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
V + L EL+L+G + + G V L
Sbjct: 180 SAVLVALTELELSGCVSTYSGGMVGLA 206
>gi|319404285|emb|CBI77878.1| DNA processing chain A [Bartonella rochalimae ATCC BAA-1498]
Length = 383
Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q +T+ K I ER + +L++ PI +D + ++G+ +YL+L+ELD
Sbjct: 307 PQENTSPPKQITNETSLIGDDIEREAVLSALSSTPIDLDTLSIYSGVSLQKLYLLLIELD 366
Query: 73 LAGRLCHHPEGKVSLT 88
LAG+L H G VSL+
Sbjct: 367 LAGKLIRHSGGYVSLS 382
>gi|114763467|ref|ZP_01442874.1| DNA processing protein DprA, putative [Pelagibaca bermudensis
HTCC2601]
gi|114544005|gb|EAU47016.1| DNA processing protein DprA, putative [Roseovarius sp. HTCC2601]
Length = 375
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCE--------RVRIKQSLNNVPIHIDDIIH 55
P + +SQ + + +I L P+ D +I
Sbjct: 283 PLEQPTASTSQQAARRRTDRAPVIPAPPPESRSLAETAQLHRQILDRLGPAPLAEDQLIR 342
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ V L +L++ GR+ P G +SL
Sbjct: 343 DLAAPSDAVAPALTDLEIDGRIRRQPGGLLSLV 375
>gi|319405728|emb|CBI79351.1| DNA processing chain A [Bartonella sp. AR 15-3]
Length = 383
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 18 NHTKNINITHYPEYTQC-ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
H+ N P ER + +L++ PI +D + ++G+ ++L+L+ELDLAG+
Sbjct: 311 AHSPNKITNETPLIGDDIERAAVLSALSSTPIDLDTLSIYSGVSLQKLHLLLIELDLAGK 370
Query: 77 LCHHPEGKVSLT 88
L H G VSL+
Sbjct: 371 LIRHSGGYVSLS 382
>gi|149200840|ref|ZP_01877815.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
gi|149145173|gb|EDM33199.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
Length = 356
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+I L P+ D +I A V LL+L+L GR+ HP G ++L
Sbjct: 304 AQILNRLGPSPLAEDQLIRDLATPAHRVAPALLDLELDGRITRHPGGLLALA 355
>gi|58039717|ref|YP_191681.1| DNA processing chain A [Gluconobacter oxydans 621H]
gi|58002131|gb|AAW61025.1| DNA processing chain A [Gluconobacter oxydans 621H]
Length = 394
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYP--EYTQCE-------RVRIKQSLNNVPIHIDD 52
+ P+ E + S + + + P T + + + L+ P+ +DD
Sbjct: 297 LPPREEAPWQRSSAHSPPLTGFSEPSTPWGSPTSEDWVEPDLAQKTVCSLLSVTPVAVDD 356
Query: 53 IIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ V L EL+L G + P G+V+L
Sbjct: 357 VVRRCQFSVSAVLATLAELELGGVVEFVPGGRVALL 392
>gi|319407290|emb|CBI80931.1| DNA processing chain A [Bartonella sp. 1-1C]
Length = 383
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ +T+ K I ER + +L++ PI +D + ++G+ +YL+L+ELD
Sbjct: 307 PRENTSPPKQITNETSLIGDDIEREAVLAALSSTPIDLDTLSIYSGVSLQKLYLLLIELD 366
Query: 73 LAGRLCHHPEGKVSLT 88
LAG+L H G VSL+
Sbjct: 367 LAGKLIRHSGGYVSLS 382
>gi|146278352|ref|YP_001168511.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
gi|145556593|gb|ABP71206.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
Length = 369
Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L VP+ D +I + A V L+ L+L GR+ P G VS
Sbjct: 317 SLILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALELEGRIQRDPGGLVS 366
>gi|206558866|ref|YP_002229626.1| SMF family protein [Burkholderia cenocepacia J2315]
gi|198034903|emb|CAR50775.1| SMF family protein [Burkholderia cenocepacia J2315]
Length = 437
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ T +I P ER + +L P+ + + H+G+ V++ LL L
Sbjct: 346 QANRTAATTAPASIEAAPPGNPSERA-VLAALGYGPVTYEWLAEHSGLSDDVLHGALLAL 404
Query: 72 DLAGRLCHHPEGKVSLTMHLPSP 94
+LAGR+ G+ + P+P
Sbjct: 405 ELAGRVASVAGGRFARLDAAPTP 427
>gi|160896284|ref|YP_001561866.1| DNA protecting protein DprA [Delftia acidovorans SPH-1]
gi|160361868|gb|ABX33481.1| DNA protecting protein DprA [Delftia acidovorans SPH-1]
Length = 405
Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E ++L + P+ +D+++ TG++A + LLEL+L GR+ P G
Sbjct: 345 AQDHENDATLRALAHDPLSLDELMDRTGMDAAALQAHLLELELEGRVERLPGGL 398
>gi|121611000|ref|YP_998807.1| DNA protecting protein DprA [Verminephrobacter eiseniae EF01-2]
gi|121555640|gb|ABM59789.1| DNA protecting protein DprA [Verminephrobacter eiseniae EF01-2]
Length = 399
Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T P + +L PI ID ++ TG+ + + LLEL+LAG +
Sbjct: 328 TPPTAGADAPAAGSAMDTPLLAALGFDPIGIDALLARTGMATAALQVALLELELAGSVAR 387
Query: 80 HPEGK 84
P G
Sbjct: 388 LPGGL 392
>gi|302036384|ref|YP_003796706.1| protein SMF, putative DNA protecting protein DprA [Candidatus
Nitrospira defluvii]
gi|300604448|emb|CBK40780.1| Protein SMF, putative DNA protecting protein DprA [Candidatus
Nitrospira defluvii]
Length = 378
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ++ F ++ + E + + +L+ +P +D++I +G+ A
Sbjct: 291 LLPQLDPAF-RARLAEGAG---TVAQPKEPFSLDETLVYDALSVLPQPVDEVIRRSGLPA 346
Query: 62 PVVYLVLLELDLAGRLCHHPEG 83
V +LL L+L + P
Sbjct: 347 AQVAAILLSLELKNCIRQLPGN 368
>gi|312115161|ref|YP_004012757.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
gi|311220290|gb|ADP71658.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
Length = 487
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ Q L+ PI IDDI TG + V+ ++ LDLAGRL + L
Sbjct: 435 ASVMQLLSFSPIAIDDICRMTGKQTREVHAAIMSLDLAGRLERRGSSHIVL 485
>gi|218779037|ref|YP_002430355.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01]
gi|218760421|gb|ACL02887.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01]
Length = 375
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVR-IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+++S T + +N P E + + ++L PIHID ++ G+ + LL
Sbjct: 293 PAARSATAMEEPLNPAPAPAMGLAEDEQTVLEALGPYPIHIDVLVQRLGMPVGALSASLL 352
Query: 70 ELDLAGRLCHHPEGKVS 86
+L+L G P S
Sbjct: 353 QLELKGLARQEPGKLFS 369
>gi|254251080|ref|ZP_04944398.1| hypothetical protein BDAG_00251 [Burkholderia dolosa AUO158]
gi|124893689|gb|EAY67569.1| hypothetical protein BDAG_00251 [Burkholderia dolosa AUO158]
Length = 440
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + N + P T ER + +L P+ + + H+G+
Sbjct: 339 IAPVSGEGKPAPTVSPNACAAPDAAQPPACTPSERA-VLAALGYGPVTYEWLAEHSGLSD 397
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
++ LL L+LAGR+ G+ + P+P
Sbjct: 398 DALHRALLALELAGRVASVAGGRFARLDAAPTP 430
>gi|297617128|ref|YP_003702287.1| DNA protecting protein DprA [Syntrophothermus lipocalidus DSM
12680]
gi|297144965|gb|ADI01722.1| DNA protecting protein DprA [Syntrophothermus lipocalidus DSM
12680]
Length = 366
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 30 EYTQCER----VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+R + L P+H+D ++ +G+ + +LLEL + G + P
Sbjct: 301 PLGDLDRSSEFDMVLDLLGTEPVHLDQLVRLSGLTPGQLSGMLLELQIRGIIEVLPGN 358
>gi|296117478|ref|ZP_06836065.1| putative DNA processing chain A [Gluconacetobacter hansenii ATCC
23769]
gi|295975999|gb|EFG82790.1| putative DNA processing chain A [Gluconacetobacter hansenii ATCC
23769]
Length = 375
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCER----VRIKQSLNNVPIHIDDIIHHTGIEA 61
+ F+ D + P + +R + + L+ P +DD++
Sbjct: 284 VPPPLFTPAPDPVPRGVEMAENMPSSPRMDRHGAHAAVLELLSFAPSSVDDLVRRCQFST 343
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
V VL E++++G + V L+ P+
Sbjct: 344 ATVLTVLSEMEMSGLIDILAGDMVVLSSAPPA 375
>gi|222832550|gb|EEE71027.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
E ++L + P+ +D+++ TG++A + LLEL+L GR+ P G H
Sbjct: 106 AQDHENDATLRALAHDPLSLDELMDRTGMDAAALQAHLLELELEGRVERLPGGLFQRLAH 165
>gi|254463451|ref|ZP_05076867.1| DNA protecting protein DprA [Rhodobacterales bacterium HTCC2083]
gi|206680040|gb|EDZ44527.1| DNA protecting protein DprA [Rhodobacteraceae bacterium HTCC2083]
Length = 356
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ+ ++ Q ++ T RI L PI D ++ G
Sbjct: 275 PQVVED---EQMPLRLAESTKPKRSLFETSKLLQRILDQLGPSPIAEDQLLRDIGAHTSK 331
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
V L L++ G++ P G +S
Sbjct: 332 VIPALTNLEMDGQIKRGPGGMIS 354
>gi|312797603|ref|YP_004030525.1| DNA processing protein [Burkholderia rhizoxinica HKI 454]
gi|312169378|emb|CBW76381.1| DNA processing protein [Burkholderia rhizoxinica HKI 454]
Length = 629
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ S++ + T R +++ + P+ ++ ++ T ++ + VL
Sbjct: 550 PWSSARRRPAYLAAARSTQANHAADAARRATLEAIGHDPVTLETLVQRTHLDCATLQAVL 609
Query: 69 LELDLAGRLCHHPEGK 84
LEL+LAG + P G+
Sbjct: 610 LELELAGTIVALPGGR 625
>gi|171319439|ref|ZP_02908544.1| DNA protecting protein DprA [Burkholderia ambifaria MEX-5]
gi|171095331|gb|EDT40312.1| DNA protecting protein DprA [Burkholderia ambifaria MEX-5]
Length = 425
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + I P T +R + +L P+ + + H+G+ V++ LL L+LAGR+
Sbjct: 340 PASASAEINDTPSDTPADRS-VLAALGYGPVTYEWLAEHSGLSDDVLHRALLALELAGRV 398
Query: 78 CHHPEGKVSLTMHLPSP 94
G+ + P+P
Sbjct: 399 ASVAGGRFARLDAAPTP 415
>gi|115353234|ref|YP_775073.1| DNA protecting protein DprA [Burkholderia ambifaria AMMD]
gi|115283222|gb|ABI88739.1| DNA protecting protein DprA [Burkholderia ambifaria AMMD]
Length = 422
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P T ER + +L P+ + + H+G+ V+Y LL L+LAGR+ P G+ +
Sbjct: 347 APPDTPAERS-VLAALGYGPVTYEWLAEHSGLSDDVLYSALLALELAGRVASVPGGRFAR 405
Query: 88 TMHLPSP 94
P+P
Sbjct: 406 LDAAPTP 412
>gi|160945997|ref|ZP_02093223.1| hypothetical protein FAEPRAM212_03530 [Faecalibacterium prausnitzii
M21/2]
gi|158443728|gb|EDP20733.1| hypothetical protein FAEPRAM212_03530 [Faecalibacterium prausnitzii
M21/2]
Length = 375
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ER R+ + P+ I+++ TG+ + L++L+L GR+ P +
Sbjct: 313 AKQPAPLSDTER-RVLACIGPKPVGIEELCVSTGLPMSALLGTLMKLELTGRVYKQPGQR 371
Query: 85 VSL 87
L
Sbjct: 372 YVL 374
>gi|88657722|ref|YP_507678.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599179|gb|ABD44648.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
Length = 375
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 3 HPQIEQNFF--SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P I+Q+ F +++SD N + N + I Q + + P I++II T +
Sbjct: 296 KPYIQQSIFDNTTKSDNNLFEINNA----------KDTILQYITHSPTEIEEIIASTNLN 345
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+EL+ A ++ P KV+L
Sbjct: 346 ISSILIALIELEAAQKIERFPNNKVAL 372
>gi|254294345|ref|YP_003060368.1| DNA protecting protein DprA [Hirschia baltica ATCC 49814]
gi|254042876|gb|ACT59671.1| DNA protecting protein DprA [Hirschia baltica ATCC 49814]
Length = 373
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 27/83 (32%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+N + + + +L+ P HID+++ V
Sbjct: 291 ENSIPPMLAEPEAPTFETLSMIDVSLSTIQSLTMALSPTPTHIDELVRVVRAPLREVNAA 350
Query: 68 LLELDLAGRLCHHPEGKVSLTMH 90
L EL+L G H G VS +
Sbjct: 351 LTELELDGIAQTHAGGYVSTVIE 373
>gi|319408534|emb|CBI82187.1| DNA processing chain A [Bartonella schoenbuchensis R1]
Length = 404
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
ER+ + +L+ PI +D + H+ I +YL+L+EL+LAG+L H +G VSL+
Sbjct: 337 NDSERLAVLSALSTTPIDLDTLSSHSNIPLQNLYLLLVELELAGKLIRHSDGCVSLSALN 396
Query: 92 P--SPQ 95
P +PQ
Sbjct: 397 PPQAPQ 402
>gi|126725956|ref|ZP_01741798.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
gi|126705160|gb|EBA04251.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
Length = 390
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNIN--ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P +Q N K T +P + + I L+ PI D +I +
Sbjct: 302 QPLSKQIESHETLSGNPIKETEYKPTVHPHQQKDVQSHIMALLSINPIAEDQLIRDLDLP 361
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
+ V LL+L+L G + G +S
Sbjct: 362 SATVSAKLLDLELEGAIMRQSGGLLS 387
>gi|300692921|ref|YP_003753916.1| smf, DNA processing chain A (drpA) [Ralstonia solanacearum PSI07]
gi|299079981|emb|CBJ52658.1| putative smf, DNA processing chain A (drpA) [Ralstonia solanacearum
PSI07]
Length = 401
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D + TG A ++ LL L+L GR+ P G+
Sbjct: 351 LLDALGFDPVDLDTLCERTGQTAAILSAQLLALELGGRIERQPGGR 396
>gi|119387028|ref|YP_918083.1| DNA protecting protein DprA [Paracoccus denitrificans PD1222]
gi|119377623|gb|ABL72387.1| DNA protecting protein DprA [Paracoccus denitrificans PD1222]
Length = 418
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
RI L P + +I G+ A V+ +L L+L+GR+ GK++L
Sbjct: 366 RILARLGPSPTEENMLIRDLGVPAAVLAPAILALELSGRVQRIAGGKLAL 415
>gi|254491244|ref|ZP_05104425.1| DNA protecting protein DprA, putative [Methylophaga thiooxidans
DMS010]
gi|224463757|gb|EEF80025.1| DNA protecting protein DprA, putative [Methylophaga thiooxydans
DMS010]
Length = 345
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+E + ++Q + + + + L PI +D +I ++G+ A V
Sbjct: 270 VETDLPAAQDSVSEKPER---------DGDYQILFEHLGFDPISVDSLIENSGLTADAVS 320
Query: 66 LVLLELDLAGRLCHHPEGK 84
+LL L+L G + P G+
Sbjct: 321 SMLLLLELQGEVESLPGGR 339
>gi|78067948|ref|YP_370717.1| SMF protein [Burkholderia sp. 383]
gi|77968693|gb|ABB10073.1| DNA protecting protein DprA [Burkholderia sp. 383]
Length = 448
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ + P + +L P+ + + H+G+ V++ LL L
Sbjct: 356 AAPATAPARDEAPSPAPPLPGTPSEQAVLAALGYGPVTYEWLAEHSGLSDDVLHRALLAL 415
Query: 72 DLAGRLCHHPEGKVS 86
+LAGR+ P G+ +
Sbjct: 416 ELAGRVASLPGGRFA 430
>gi|163733552|ref|ZP_02140995.1| DNA processing protein DprA, putative [Roseobacter litoralis Och
149]
gi|161393340|gb|EDQ17666.1| DNA processing protein DprA, putative [Roseobacter litoralis Och
149]
Length = 358
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ+ + + D+ T + R +I L+ P+ D +I + A
Sbjct: 276 PQLPIPAPTPRRDSPP-PAKMKTKLKQAAALHR-QILSRLSPAPVPEDQLIRDLAVTASE 333
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
LL+L++ G++ G +S
Sbjct: 334 AAPALLDLEMDGQITRQSGGMLS 356
>gi|120613317|ref|YP_972995.1| DNA protecting protein DprA [Acidovorax citrulli AAC00-1]
gi|120591781|gb|ABM35221.1| DNA protecting protein DprA [Acidovorax citrulli AAC00-1]
Length = 408
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCER-VRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
S+ S + + + + P+ + +SL P+ +D ++ TG++A + +
Sbjct: 324 PAAPSTASPSARPEGADGSEPPDRAASGPHADVLESLGFDPMGLDALVARTGLDASRLQV 383
Query: 67 VLLELDLAGRLCHHPEGK 84
LLEL+L G++ P G
Sbjct: 384 ALLELELEGQVARLPGGL 401
>gi|319764919|ref|YP_004128856.1| DNA protecting protein dpra [Alicycliphilus denitrificans BC]
gi|317119480|gb|ADV01969.1| DNA protecting protein DprA [Alicycliphilus denitrificans BC]
Length = 379
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + P + +L P+ +D ++ TG+ A + + LLEL+
Sbjct: 301 EELRLPAAEQAPASDAPPPAAPAHQEVLDALGFDPLGLDALVARTGLPAATLQVRLLELE 360
Query: 73 LAGRLCHHPEGK 84
L G++ P G
Sbjct: 361 LDGQVARLPGGL 372
>gi|222112557|ref|YP_002554821.1| DNA protecting protein dpra [Acidovorax ebreus TPSY]
gi|221732001|gb|ACM34821.1| DNA protecting protein DprA [Acidovorax ebreus TPSY]
Length = 386
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D ++ TG++A + + LLEL+L GR+ P G
Sbjct: 334 VLDALGFDPLGLDALVARTGLDAATLQVRLLELELEGRVARLPGGL 379
>gi|121596333|ref|YP_988229.1| Fis family transcriptional regulator [Acidovorax sp. JS42]
gi|120608413|gb|ABM44153.1| DNA protecting protein DprA [Acidovorax sp. JS42]
Length = 386
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D ++ TG++A + + LLEL+L GR+ P G
Sbjct: 334 VLDALGFDPLGLDALVARTGLDAATLQVRLLELELEGRVARLPGGL 379
>gi|116691146|ref|YP_836769.1| DNA protecting protein DprA [Burkholderia cenocepacia HI2424]
gi|116649235|gb|ABK09876.1| DNA protecting protein DprA [Burkholderia cenocepacia HI2424]
Length = 475
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T +I P T E+ + +L P+ + + H+G+ V++ LL L+LAG
Sbjct: 388 TAATTAPASIEAAPPGTPSEQA-VLTALGYGPVTYEWLAEHSGLSNDVLHGALLALELAG 446
Query: 76 RLCHHPEGKVSLTMHLPSP 94
R+ G+ + P+P
Sbjct: 447 RVASVAGGRFARLDAAPTP 465
>gi|170697717|ref|ZP_02888804.1| DNA protecting protein DprA [Burkholderia ambifaria IOP40-10]
gi|170137332|gb|EDT05573.1| DNA protecting protein DprA [Burkholderia ambifaria IOP40-10]
Length = 422
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + S + I + P +T ER + +L P+ + + H+G+ V++
Sbjct: 327 EPAAKAGSAVAAAASAEIKNAPPHTPAERS-VLAALGYGPVTYEWLAEHSGLSDDVLHSA 385
Query: 68 LLELDLAGRLCHHPEGKVS 86
LL L+LAGR+ P G+ +
Sbjct: 386 LLALELAGRVASVPGGRFA 404
>gi|89895301|ref|YP_518788.1| hypothetical protein DSY2555 [Desulfitobacterium hafniense Y51]
gi|219669735|ref|YP_002460170.1| DNA protecting protein DprA [Desulfitobacterium hafniense DCB-2]
gi|89334749|dbj|BAE84344.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539995|gb|ACL21734.1| DNA protecting protein DprA [Desulfitobacterium hafniense DCB-2]
Length = 389
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E+ +I L++VP HID I ++ + + L LLEL LAGR+ P L
Sbjct: 331 SSEQQQILNQLSDVPTHIDQITMNSEVPPEQIPLALLELQLAGRIEQLPGQLYVLA 386
>gi|107024059|ref|YP_622386.1| DNA processing protein DprA [Burkholderia cenocepacia AU 1054]
gi|105894248|gb|ABF77413.1| DNA protecting protein DprA [Burkholderia cenocepacia AU 1054]
Length = 475
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T +I P T E+ + +L P+ + + H+G+ V++ LL L+LAG
Sbjct: 388 TAATTAPASIEAAPPGTPSEQA-VLTALGYGPVTYEWLAEHSGLSNDVLHGALLALELAG 446
Query: 76 RLCHHPEGKVSLTMHLPSP 94
R+ G+ + P+P
Sbjct: 447 RVASVAGGRFARLDAAPTP 465
>gi|83748635|ref|ZP_00945653.1| Smf protein [Ralstonia solanacearum UW551]
gi|207741947|ref|YP_002258339.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum IPO1609]
gi|83724679|gb|EAP71839.1| Smf protein [Ralstonia solanacearum UW551]
gi|206593333|emb|CAQ60260.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum IPO1609]
Length = 403
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E + +L P+ +D + TG A + LL L+L GR+ P G+
Sbjct: 349 EETALLDALGFDPVDLDTLCQRTGQTAAPLSAQLLTLELEGRIERQPGGR 398
>gi|207727556|ref|YP_002255950.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum MolK2]
gi|206590793|emb|CAQ56405.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum MolK2]
Length = 403
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E + +L P+ +D + TG A + LL L+L GR+ P G+
Sbjct: 349 EETALLDALGFDPVDLDTLCQRTGQTAAPLSAQLLTLELEGRIERQPGGR 398
>gi|260427296|ref|ZP_05781275.1| protein smf [Citreicella sp. SE45]
gi|260421788|gb|EEX15039.1| protein smf [Citreicella sp. SE45]
Length = 398
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCER------VRIKQSLNNVPIHIDDIIHH 56
P + D + P + R I L VP+ D +I
Sbjct: 306 RPPAQAQLPLDLDDAVIDDTPVVPIAPPERRSLRETAALHAEILSRLGPVPVAEDQLIRD 365
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ V VL +L+L GR+ P G ++
Sbjct: 366 LAEPSDTVSPVLTDLELDGRIQRRPGGLLT 395
>gi|260575925|ref|ZP_05843920.1| DNA protecting protein DprA [Rhodobacter sp. SW2]
gi|259021851|gb|EEW25152.1| DNA protecting protein DprA [Rhodobacter sp. SW2]
Length = 378
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+I L P+ D +I + A +V LL L+L G+L G +S
Sbjct: 327 QILARLGPSPLAEDQLIRDLAVPAALVVPELLSLELEGKLLRQAGGLLS 375
>gi|170734477|ref|YP_001766424.1| DNA protecting protein DprA [Burkholderia cenocepacia MC0-3]
gi|169817719|gb|ACA92302.1| DNA protecting protein DprA [Burkholderia cenocepacia MC0-3]
Length = 422
Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T +I P T E+ + +L P+ + + H+G+ V++ LL L+LAGR
Sbjct: 336 AATTAPASIEAAPPGTPSEQA-VLAALGYGPVTYEWLAEHSGLSDDVLHGALLALELAGR 394
Query: 77 LCHHPEGKVSLTMHLPSP 94
+ G+ + P+P
Sbjct: 395 VASVAGGRFARLDAAPTP 412
>gi|94312498|ref|YP_585708.1| DNA processing protein DprA, putative [Cupriavidus metallidurans
CH34]
gi|93356350|gb|ABF10439.1| DNA processing protein (DprA/Smf type) [Cupriavidus metallidurans
CH34]
gi|222838659|gb|EEE77024.1| predicted protein [Populus trichocarpa]
Length = 371
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ F D ++ P+ +L P+ D + +G+ + +L
Sbjct: 291 DVFEEFGDPGGVASVAPVPVPDSAPVPGDPFGAALAYDPVTFDALCERSGLAPHMAAAML 350
Query: 69 LELDLAGRLCHHPEGK 84
LEL+L G + +
Sbjct: 351 LELELGGTVERMAGNR 366
>gi|330994161|ref|ZP_08318089.1| Protein smf [Gluconacetobacter sp. SXCC-1]
gi|329758628|gb|EGG75144.1| Protein smf [Gluconacetobacter sp. SXCC-1]
Length = 390
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCE---RVRIKQSLNNVPIHIDDIIHHTGIE 60
P + + + Q E I+ L+ P +DD++
Sbjct: 299 PVRNPAVPQRERAGTVLRAVPAPGPCPPAQGEGDLHEMIEGFLSFTPSPVDDLVRRCQFS 358
Query: 61 APVVYLVLLELDLAGRLCHHPEGKV 85
V L E+++AG + V
Sbjct: 359 TAAVLTALSEMEIAGTVEFLAGDMV 383
>gi|254246862|ref|ZP_04940183.1| SMF protein [Burkholderia cenocepacia PC184]
gi|124871638|gb|EAY63354.1| SMF protein [Burkholderia cenocepacia PC184]
Length = 475
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T +I P T E+ + +L P+ + + H+G+ V++ LL L+LAGR
Sbjct: 389 AATTAPASIEAAPPGTPSEQA-VLTALGYGPVTYEWLAEHSGLSDDVLHGALLALELAGR 447
Query: 77 LCHHPEGKVSLTMHLPSP 94
+ G+ + P+P
Sbjct: 448 VASVAGGRFARLDAAPTP 465
>gi|328905809|gb|EGG25585.1| transcriptional regulator, DeoR family [Propionibacterium sp.
P08]
Length = 252
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 10 IINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 66
>gi|58696725|ref|ZP_00372270.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
simulans]
gi|225630004|ref|YP_002726795.1| DNA processing chain A [Wolbachia sp. wRi]
gi|58537093|gb|EAL60213.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
simulans]
gi|225591985|gb|ACN95004.1| DNA processing chain A [Wolbachia sp. wRi]
Length = 362
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
Q + ++ + E Q + I +N+VP+ ID++I +G+ + + LL
Sbjct: 283 LPPQQKNLFDVEHYAVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIALMALL 342
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
EL+L ++ P K+SL
Sbjct: 343 ELELENKIERSPGNKISLIF 362
>gi|58698108|ref|ZP_00373031.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535354|gb|EAL59430.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 346
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
Q + ++ + E Q + I +N+VP+ ID++I +G+ + + LL
Sbjct: 267 LPPQQKNLFDVEHYAVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIALMALL 326
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
EL+L ++ P K+SL
Sbjct: 327 ELELENKIERSPGNKISLIF 346
>gi|301632279|ref|XP_002945218.1| PREDICTED: hypothetical protein LOC100495052 [Xenopus (Silurana)
tropicalis]
Length = 729
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E + + E + ++ P+ +D +I TG++ + +
Sbjct: 652 ELRLPAPAVAVQPAVSAEAQESVEP-------LLSAMGWDPVGLDALIARTGMDTATLQV 704
Query: 67 VLLELDLAGRLCHHPEG 83
LLE +LAGR+ P G
Sbjct: 705 ALLEHELAGRVARLPGG 721
>gi|297717816|gb|ADI50051.1| putative DNA processing protein DprA [Candidatus Odyssella
thessalonicensis L13]
Length = 361
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ P+ S + ++ P + I + L+ PI I+ I +
Sbjct: 274 ILKPEFNLTMLSEPEAEAYVASVEDFSVPA---SLKEEILRGLSETPIEINFIAQDFKLN 330
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + ++LEL+L G + G VS++
Sbjct: 331 SQEIMAIILELELEGLIVRQANGTVSIS 358
>gi|241766762|ref|ZP_04764592.1| DNA protecting protein DprA [Acidovorax delafieldii 2AN]
gi|241362868|gb|EER58607.1| DNA protecting protein DprA [Acidovorax delafieldii 2AN]
Length = 390
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E + + Q++ P+ +D ++ TG++ + +
Sbjct: 306 ELRLPGPVQASAAAPTNMAPPNAAPPPPAESPLLQAMGFDPVGLDTLMARTGMDTATMQV 365
Query: 67 VLLELDLAGRLCHHPEGK 84
LLEL+LAG + P G+
Sbjct: 366 QLLELELAGAVARLPGGR 383
>gi|91781429|ref|YP_556635.1| SMF protein [Burkholderia xenovorans LB400]
gi|91685383|gb|ABE28583.1| DNA protecting protein DprA [Burkholderia xenovorans LB400]
Length = 421
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P Q +S +D+ N H P + ER + +L + P ++ + T +E
Sbjct: 335 KPATAQTAETSAADSATAPNPAPAHRPVDPEAER--LLTALGHSPTTLEILATRTEMEDA 392
Query: 63 VVYLVLLELDLAGRLCHHPEGK 84
+ LL+L+LAG++ P G+
Sbjct: 393 TLQSTLLQLELAGQVTVLPGGR 414
>gi|314929122|gb|EFS92953.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL044PA1]
Length = 244
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 2 IINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 58
>gi|239818073|ref|YP_002946983.1| DNA protecting protein DprA [Variovorax paradoxus S110]
gi|239804650|gb|ACS21717.1| DNA protecting protein DprA [Variovorax paradoxus S110]
Length = 382
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + + + N N P + + +L P+ +D + TG A +
Sbjct: 303 PSLHTGSAAAPASANGNAGGAPASEEP----LLDALGFDPVSLDALSARTGWSAAALQAR 358
Query: 68 LLELDLAGRLCHHPEGK 84
LLEL+L G + P G
Sbjct: 359 LLELELDGHVARLPGGL 375
>gi|121999102|ref|YP_001003889.1| DNA protecting protein DprA [Halorhodospira halophila SL1]
gi|121590507|gb|ABM63087.1| DNA protecting protein DprA [Halorhodospira halophila SL1]
Length = 388
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
N + RI ++L + P+ +D + +G+ + +LL ++L G L P
Sbjct: 318 NAPSESTSPAADPDEARILEALGHDPLTLDTLQQRSGLTLDRLSSILLTMELKGLLTAVP 377
Query: 82 EGK 84
G+
Sbjct: 378 GGR 380
>gi|254449997|ref|ZP_05063434.1| DNA protecting protein DprA [Octadecabacter antarcticus 238]
gi|198264403|gb|EDY88673.1| DNA protecting protein DprA [Octadecabacter antarcticus 238]
Length = 336
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 21 KNINITHYPEY-----TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + P+ T I L+ P+ D +I G + +L++L+L G
Sbjct: 263 PKLPLEPVPQPRGLRETALLHADILDRLSPAPMAEDQLIRSLGAAPTAIAPLLMDLELDG 322
Query: 76 RLCHHPEGKVS 86
++ G ++
Sbjct: 323 KVIRQAGGILA 333
>gi|326319400|ref|YP_004237072.1| DNA protecting protein DprA [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323376236|gb|ADX48505.1| DNA protecting protein DprA [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 403
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCER---------VRIKQSLNNVPIHIDDIIHH 56
++ + + + P E + ++L P+ +D ++
Sbjct: 309 VQDVLEELRLPAAPSSALLPAGPPGAGNDEPPGRAASGPHADVLEALGFDPMGLDALVAR 368
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGK 84
TG++A + + LLEL+L G++ P G
Sbjct: 369 TGLDASRLQVALLELELEGQVARLPGGL 396
>gi|134297377|ref|YP_001121112.1| DNA protecting protein DprA [Burkholderia vietnamiensis G4]
gi|134140534|gb|ABO56277.1| DNA protecting protein DprA [Burkholderia vietnamiensis G4]
Length = 449
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+D P ER + +L P+ + + H+ + V++ LL L+LA
Sbjct: 362 ADAPAVPPR-TACAPANDPAERA-VLAALGYGPVTYEWLAEHSDLPDDVLHRALLALELA 419
Query: 75 GRLCHHPEGKVSLTMHLPSP 94
GR+ G+ + P+P
Sbjct: 420 GRVASVAGGRFARLDLAPTP 439
>gi|172062106|ref|YP_001809758.1| DNA protecting protein DprA [Burkholderia ambifaria MC40-6]
gi|171994623|gb|ACB65542.1| DNA protecting protein DprA [Burkholderia ambifaria MC40-6]
Length = 422
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P T ER + +L P+ + + H+G+ V++ LL L+LAGR+ G+ +
Sbjct: 347 VPPDTPAERS-VLAALGYGPVTYEWLAEHSGLSDDVLHSALLALELAGRVASVAGGRFA 404
>gi|73543092|ref|YP_297612.1| SMF protein [Ralstonia eutropha JMP134]
gi|72120505|gb|AAZ62768.1| SMF protein [Ralstonia eutropha JMP134]
Length = 379
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
P + L + P+ +D + +G+ + LLEL+L GR
Sbjct: 311 PGKVAVAVPPMRSTPDDPLLAVLTHDPVTLDTLCERSGLAPETLATRLLELELEGRAERL 370
Query: 81 PEGK 84
P
Sbjct: 371 PGNL 374
>gi|190571736|ref|YP_001976094.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019224|ref|ZP_03335031.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190358008|emb|CAQ55476.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995333|gb|EEB55974.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 361
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
Q + + ++ + E Q + I +N+VP+ ID++I +G+ A + + LL
Sbjct: 282 LPPQQKNLFNVEHYAVNQKQEKLQQAKYVIVDHINSVPVDIDELILASGLSANIALMALL 341
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
EL+L ++ P K+SL
Sbjct: 342 ELELENKIERSPGNKISLIF 361
>gi|17544787|ref|NP_518189.1| SMF protein [Ralstonia solanacearum GMI1000]
gi|17427076|emb|CAD13596.1| putative smf protein (predicted rossmann fold nucleotide-binding
protein involved in dna uptake) [Ralstonia solanacearum
GMI1000]
Length = 401
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D + TG A + LL L+LAG + P G+
Sbjct: 351 LLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGR 396
>gi|314970931|gb|EFT15029.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA3]
Length = 135
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 10 IINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 66
>gi|299068357|emb|CBJ39581.1| putative smf, DNA processing chain A (drpA) [Ralstonia solanacearum
CMR15]
Length = 401
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D + TG A + LL L+LAG + P G+
Sbjct: 351 LLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGR 396
>gi|89055649|ref|YP_511100.1| DNA processing protein DprA, putative [Jannaschia sp. CCS1]
gi|88865198|gb|ABD56075.1| DNA protecting protein DprA [Jannaschia sp. CCS1]
Length = 402
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCE---RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ D + + RI L P+ D +I +
Sbjct: 322 PAQSGDAPSAVVHELQRPTPAAAKDGGLEGRILAHLGPTPVAEDQMIRDLNATPREMAQA 381
Query: 68 LLELDLAGRLCHHPEGKVS 86
L L+++GR+ G VS
Sbjct: 382 LAVLEMSGRVTRSAGGMVS 400
>gi|89071023|ref|ZP_01158240.1| DNA processing protein DprA, putative [Oceanicola granulosus
HTCC2516]
gi|89043411|gb|EAR49628.1| DNA processing protein DprA, putative [Oceanicola granulosus
HTCC2516]
Length = 356
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
RI + L P+ D +I + A + L EL+L G + P G +S
Sbjct: 305 RILEKLGPSPLAEDQLIRDLAVTATALAPALTELELDGAVTRQPGGLLS 353
>gi|225677140|ref|ZP_03788139.1| DNA processing chain A [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225590807|gb|EEH12035.1| DNA processing chain A [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 362
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
Q + ++ + E Q + I +N+VP+ ID++I +G+ + + LL
Sbjct: 283 LPPQQKNLFDVEHHFVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIALMALL 342
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
EL+L ++ P K+SL
Sbjct: 343 ELELENKIERSPGNKISLIF 362
>gi|58616939|ref|YP_196138.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
gi|58416551|emb|CAI27664.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
Length = 375
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q + + P+ I++II T + + L+EL+ + ++ P KV L
Sbjct: 318 DNAKNLILQHITHSPVEIEEIITSTNLSISTTLIALMELETSHKIERLPNNKVML 372
>gi|42520001|ref|NP_965916.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409738|gb|AAS13850.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 362
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
Q + ++ + E Q + I +N+VP+ ID++I +G+ + + LL
Sbjct: 283 LPPQQKNLFDVEHHFVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIALMALL 342
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
EL+L ++ P K+SL
Sbjct: 343 ELELENKIERSPGNKISLIF 362
>gi|223937270|ref|ZP_03629176.1| SMF family protein [bacterium Ellin514]
gi|223894055|gb|EEF60510.1| SMF family protein [bacterium Ellin514]
Length = 252
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + ++ + ++ +L+N +ID+II H+G+ + V
Sbjct: 168 LSEFEYLFPSTNRPPGASETGVLPALNLSENEQKVYDALSNEESNIDEIIRHSGLPSSAV 227
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ LL L++ RL GK+ L
Sbjct: 228 SVALLGLEMK-RLIRQLPGKMFL 249
>gi|114799220|ref|YP_760845.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
gi|114739394|gb|ABI77519.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
Length = 371
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E R++++L+ + +D+I G+ A +L+EL+LAG P G +
Sbjct: 315 PSELARVREALSPHAMPLDEIARAAGVSAARAGAILMELELAGEAITFPGGMAA 368
>gi|313835145|gb|EFS72859.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA2]
Length = 127
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 2 IINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 58
>gi|84685604|ref|ZP_01013501.1| DNA processing protein DprA, putative [Maritimibacter alkaliphilus
HTCC2654]
gi|84666270|gb|EAQ12743.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2654]
Length = 375
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L P+ D ++ + A V L +L+L G + P G +S
Sbjct: 325 ILDRLGPSPVSEDQLVRDLAMPAGDVASELTDLELEGHVSRAPGGLIS 372
>gi|163742204|ref|ZP_02149592.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
2.10]
gi|161384534|gb|EDQ08915.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
2.10]
Length = 355
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERV---------RIKQSLNNVPIHID 51
+V ++ ++ + +T P + +R RI L P D
Sbjct: 247 VVAELSDRPVPPPEAAASA----RLTELPPPPKEQRSLSDTAALHQRILDRLGPAPTAED 302
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
++ I + + L +L+L+G + G + L PQ
Sbjct: 303 QLVRDLAIPSRDLAPALTDLELSGAVARAAGGLLILGDFDREPQ 346
>gi|114321777|ref|YP_743460.1| DNA protecting protein DprA [Alkalilimnicola ehrlichii MLHE-1]
gi|114228171|gb|ABI57970.1| DNA protecting protein DprA [Alkalilimnicola ehrlichii MLHE-1]
Length = 379
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
++Q + D + E + +++ + P+ +D ++ G+ A V
Sbjct: 292 VQQALPLAIPDRTAGVTADNGGSDAGPDPEYAALLEAMGHDPVALDTLVGRCGLTADAVS 351
Query: 66 LVLLELDLAGRLCHHPEGK 84
+LL L+L GR+ P G+
Sbjct: 352 SMLLLLELQGRVQALPGGR 370
>gi|110679407|ref|YP_682414.1| DNA processing protein DprA, putative [Roseobacter denitrificans
OCh 114]
gi|109455523|gb|ABG31728.1| DNA processing protein DprA, putative [Roseobacter denitrificans
OCh 114]
Length = 389
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCE--RVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E +S + Q +I L+ P+ D +I + A
Sbjct: 306 ELPLPASATARPKETARPTKIKTTLKQAAALHRQILSKLSPAPVPEDQLIRDLAVSASEA 365
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
LL+L+L G++ G +S
Sbjct: 366 APALLDLELDGQIKREAGGMLS 387
>gi|73666848|ref|YP_302864.1| SMF protein [Ehrlichia canis str. Jake]
gi|72393989|gb|AAZ68266.1| SMF protein [Ehrlichia canis str. Jake]
Length = 374
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q +++ PI I++II T + + + L EL+ + ++ P KV+L
Sbjct: 321 KDIILQHISHSPIEIEEIITSTNLNISNILIALTELEESKKIERFPNNKVAL 372
>gi|113869637|ref|YP_728126.1| Smf protein [Ralstonia eutropha H16]
gi|113528413|emb|CAJ94758.1| Smf protein [Ralstonia eutropha H16]
Length = 399
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +L P+ +D + +G V LLEL+LAG P
Sbjct: 349 LLAALGYDPVTLDALCERSGQPPEAVAARLLELELAGHAERLPGN 393
>gi|56477102|ref|YP_158691.1| SMF protein, Rossmann fold nucleotide-binding protein involved in
DNA uptake [Aromatoleum aromaticum EbN1]
gi|56313145|emb|CAI07790.1| SMF protein, Rossmann fold nucleotide-binding protein involved in
DNA uptake [Aromatoleum aromaticum EbN1]
Length = 390
Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ P E +R+ +L + + ID + +G+ +Y +LL L
Sbjct: 314 RTRETRPADPPFEPRTPPPAASAEEIRVLDTLGHEALDIDTLTARSGLTLDALYAILLAL 373
Query: 72 DLAGRLCHHPEGK 84
+L G + P G+
Sbjct: 374 ELEGHVTRLPGGR 386
>gi|84516624|ref|ZP_01003983.1| DNA processing protein DprA, putative [Loktanella vestfoldensis
SKA53]
gi|84509660|gb|EAQ06118.1| DNA processing protein DprA, putative [Loktanella vestfoldensis
SKA53]
Length = 336
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P I + I Q L P+ D ++ + A
Sbjct: 258 KPVITTPVPRQAPQARPALRNIAALH--------AMILQRLGPAPVAEDQLLRDLAVSAT 309
Query: 63 VVYLVLLELDLAGRLCHHPEGKVS 86
V L++L+L G++ G ++
Sbjct: 310 DVGPALVDLELDGKITRQAGGLLA 333
>gi|314987079|gb|EFT31171.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA2]
gi|314990721|gb|EFT34812.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA3]
Length = 253
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|158522455|ref|YP_001530325.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3]
gi|158511281|gb|ABW68248.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3]
Length = 389
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+N + + VR+ Q+L P+HID+I + +LL+L+L G +
Sbjct: 306 ENKHAGKPTPGLDTDEVRVLQTLEPYPVHIDEIAQKAAMAPGKTAGILLQLELKGFVTQE 365
Query: 81 PEGK 84
P +
Sbjct: 366 PGKR 369
>gi|254477402|ref|ZP_05090788.1| DNA protecting protein DprA [Ruegeria sp. R11]
gi|214031645|gb|EEB72480.1| DNA protecting protein DprA [Ruegeria sp. R11]
Length = 362
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 32/83 (38%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
HP + ++ + + + + T I L P+ D ++ + A
Sbjct: 273 HPASLPDVTNTTAPPDLPPPPSEQRSLQETAALHQEILDRLGPSPLTEDQLLRDLSLAAK 332
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
+ VL +L+L+G + P G +
Sbjct: 333 DLSPVLTDLELSGDITRQPGGML 355
>gi|313764990|gb|EFS36354.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL013PA1]
gi|313815450|gb|EFS53164.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL059PA1]
gi|314916245|gb|EFS80076.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA4]
gi|314917515|gb|EFS81346.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA1]
gi|314921849|gb|EFS85680.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA3]
gi|314930888|gb|EFS94719.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL067PA1]
gi|314955318|gb|EFS99723.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL027PA1]
gi|314959190|gb|EFT03292.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA1]
gi|315099311|gb|EFT71287.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL059PA2]
gi|315102351|gb|EFT74327.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL046PA1]
gi|327454283|gb|EGF00938.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA3]
gi|327456348|gb|EGF03003.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL083PA2]
gi|328756041|gb|EGF69657.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA1]
gi|328758887|gb|EGF72503.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL025PA2]
Length = 252
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|289424388|ref|ZP_06426171.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK187]
gi|289155085|gb|EFD03767.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK187]
gi|313771172|gb|EFS37138.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL074PA1]
gi|313792536|gb|EFS40622.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA1]
gi|313803537|gb|EFS44719.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA2]
gi|313811802|gb|EFS49516.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL083PA1]
gi|313829015|gb|EFS66729.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL063PA2]
gi|313832338|gb|EFS70052.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL007PA1]
gi|313832797|gb|EFS70511.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL056PA1]
gi|313839656|gb|EFS77370.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL086PA1]
gi|314964247|gb|EFT08347.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA1]
gi|314975230|gb|EFT19325.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL053PA1]
gi|314977645|gb|EFT21740.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL045PA1]
gi|314985170|gb|EFT29262.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA1]
gi|315081613|gb|EFT53589.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL078PA1]
gi|315097130|gb|EFT69106.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL038PA1]
gi|315109833|gb|EFT81809.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL030PA2]
gi|327332534|gb|EGE74269.1| transcriptional regulator [Propionibacterium acnes HL096PA2]
gi|327334592|gb|EGE76303.1| transcriptional regulator [Propionibacterium acnes HL097PA1]
gi|327446688|gb|EGE93342.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL043PA2]
gi|327448870|gb|EGE95524.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL043PA1]
gi|327457380|gb|EGF04035.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL092PA1]
gi|328759732|gb|EGF73328.1| transcriptional regulator [Propionibacterium acnes HL099PA1]
Length = 252
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|254447541|ref|ZP_05061007.1| DNA protecting protein DprA [gamma proteobacterium HTCC5015]
gi|198262884|gb|EDY87163.1| DNA protecting protein DprA [gamma proteobacterium HTCC5015]
Length = 373
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + Q++ P+ +D ++ T +A + +LL L+L GR+ P G+
Sbjct: 314 PPLDSDHEALLQAMGFDPVTLDALVQQTDFDASELASMLLILELEGRVSAEPGGR 368
>gi|313115002|ref|ZP_07800495.1| DNA protecting protein DprA [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622693|gb|EFQ06155.1| DNA protecting protein DprA [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 378
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
PE ++ + P+ I+++ +G+ V+ L++L+L+GR+ P +
Sbjct: 315 TAKQPEPLSENERKVLSCIGPQPLGIEELCVRSGLPTAVLLGTLMKLELSGRVLCMPGKR 374
>gi|315083115|gb|EFT55091.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL027PA2]
gi|328757941|gb|EGF71557.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL020PA1]
Length = 253
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|289427481|ref|ZP_06429194.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J165]
gi|289159411|gb|EFD07602.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J165]
gi|313806890|gb|EFS45388.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA2]
gi|313814189|gb|EFS51903.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL025PA1]
gi|314980223|gb|EFT24317.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL072PA2]
gi|315088047|gb|EFT60023.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL072PA1]
gi|327333707|gb|EGE75424.1| transcriptional regulator [Propionibacterium acnes HL096PA3]
gi|327444434|gb|EGE91088.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL013PA2]
Length = 252
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|254440562|ref|ZP_05054056.1| DNA protecting protein DprA, putative [Octadecabacter antarcticus
307]
gi|198256008|gb|EDY80322.1| DNA protecting protein DprA, putative [Octadecabacter antarcticus
307]
Length = 344
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 21 KNINITHYPEY-----TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + P+ T I L+ P+ D +I G + +L++L+L G
Sbjct: 271 PELPLEPVPQPRGLRETALLHADILDRLSPAPMAEDQLIRSLGGAPTAIAPLLMDLELDG 330
Query: 76 RLCHHPEGKVS 86
++ G ++
Sbjct: 331 KVIRQAGGILA 341
>gi|295129562|ref|YP_003580225.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK137]
gi|291375552|gb|ADD99406.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK137]
Length = 252
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|50841523|ref|YP_054750.1| transcriptional regulator [Propionibacterium acnes KPA171202]
gi|50839125|gb|AAT81792.1| transcriptional regulator [Propionibacterium acnes KPA171202]
gi|313817674|gb|EFS55388.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL046PA2]
gi|313821499|gb|EFS59213.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA1]
gi|313824556|gb|EFS62270.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA2]
gi|314926301|gb|EFS90132.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA3]
gi|314961694|gb|EFT05795.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA2]
gi|315086644|gb|EFT58620.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA3]
gi|315107465|gb|EFT79441.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL030PA1]
Length = 252
Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|57238947|ref|YP_180083.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|58578880|ref|YP_197092.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|57161026|emb|CAH57932.1| putative DNA processing protein chain A [Ehrlichia ruminantium str.
Welgevonden]
gi|58417506|emb|CAI26710.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
Length = 375
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q + + P+ I++II T + + L+EL+ + ++ P KV L
Sbjct: 318 DNAKNLILQHITHSPVKIEEIITSTNLSISTTLIALMELETSHKIERLPNNKVML 372
>gi|163859049|ref|YP_001633347.1| hypothetical protein Bpet4728 [Bordetella petrii DSM 12804]
gi|163262777|emb|CAP45080.1| conserved hypothetical protein [Bordetella petrii]
Length = 371
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
Q+ + Q + + ++L + P+H+D + TG++ +
Sbjct: 291 QDITDELGGGAPVASRETPSARAAAQPD-TPLLRALGHDPLHLDALQARTGLDVATLNAQ 349
Query: 68 LLELDLAGRLCHHPEGK 84
LLEL+LAGR+ G+
Sbjct: 350 LLELELAGRVARLDGGR 366
>gi|309780260|ref|ZP_07675011.1| SMF family protein [Ralstonia sp. 5_7_47FAA]
gi|308920963|gb|EFP66609.1| SMF family protein [Ralstonia sp. 5_7_47FAA]
Length = 401
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D + TG A + LL L+L R+ P G+
Sbjct: 349 TALLGALGFDPVDLDTLCERTGQAAAALSSQLLALELDSRVERQPGGR 396
>gi|315079027|gb|EFT51039.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL053PA2]
Length = 244
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 2 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 58
>gi|282853073|ref|ZP_06262410.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|282582526|gb|EFB87906.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|314922714|gb|EFS86545.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL001PA1]
gi|314982942|gb|EFT27034.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA3]
gi|315091247|gb|EFT63223.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA4]
gi|315105202|gb|EFT77178.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA2]
Length = 252
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|314965799|gb|EFT09898.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA2]
gi|315094483|gb|EFT66459.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL060PA1]
gi|327328977|gb|EGE70737.1| transcriptional regulator [Propionibacterium acnes HL103PA1]
Length = 280
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|319785848|ref|YP_004145323.1| DNA protecting protein DprA [Pseudoxanthomonas suwonensis 11-1]
gi|317464360|gb|ADV26092.1| DNA protecting protein DprA [Pseudoxanthomonas suwonensis 11-1]
Length = 375
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ T + R+ ++L + PI +D ++ TG+ + +LL ++L GR
Sbjct: 297 APEGASAGGTETAPPLSADHQRLWRALGHDPIPMDVLVERTGLTPASLSSMLLAMELDGR 356
Query: 77 L 77
+
Sbjct: 357 V 357
>gi|300705528|ref|YP_003747131.1| smf, DNA processing chain a (drpa) [Ralstonia solanacearum
CFBP2957]
gi|299073192|emb|CBJ44550.1| putative smf, DNA processing chain A (drpA) [Ralstonia solanacearum
CFBP2957]
Length = 403
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+ +D + TG A + LL L+L GR+ G+
Sbjct: 353 LLDALGFDPVDLDTLCQRTGQTAAPLSAQLLALELEGRIERLAGGR 398
>gi|193214336|ref|YP_001995535.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110]
gi|193087813|gb|ACF13088.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110]
Length = 386
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 19 HTKNINITHYPEYT-QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+N + P+ + E I +N PI ID+++ +G+ + L EL+L ++
Sbjct: 315 FEENGHRPLPPQESLSQEESDILALINASPIQIDELVEKSGMAVSDLQCTLFELELKHQV 374
Query: 78 CHHPE 82
P
Sbjct: 375 EQLPG 379
>gi|163738379|ref|ZP_02145794.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
BS107]
gi|161388300|gb|EDQ12654.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
BS107]
Length = 355
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVR---------IKQSLNNVPIHID 51
+V ++ ++ + +T P + +R I L P D
Sbjct: 247 VVAELSDRPVPPPEAAASA----RLTELPPPPKEQRSLSDTAALHQLILDRLGPAPTAED 302
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
++ I + + L +L+L+G + G + P P+
Sbjct: 303 QLVRDLAIPSRDLAPALTDLELSGAVARAAGGLLIRGDFDPDPK 346
>gi|57234466|ref|YP_181459.1| DNA processing protein DprA, putative [Dehalococcoides ethenogenes
195]
gi|57224914|gb|AAW39971.1| DNA processing protein DprA, putative [Dehalococcoides ethenogenes
195]
Length = 406
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ PE Q E I L PIHID + G+ +V L ++L G++
Sbjct: 328 VPDNTTKAVPE-NQTE-SLILDKLGYEPIHIDQLCRECGLGIALVSSTLAIMELRGQV-R 384
Query: 80 HPEGK 84
G
Sbjct: 385 SAGGM 389
>gi|270308041|ref|YP_003330099.1| Rossmann fold DNA uptake nucleotide-binding protein
[Dehalococcoides sp. VS]
gi|270153933|gb|ACZ61771.1| Rossmann fold DNA uptake nucleotide-binding protein
[Dehalococcoides sp. VS]
Length = 373
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ T I L PIHID I G+ +V L ++L G++ G
Sbjct: 297 DNTLASAPENQTESLILDKLGYEPIHIDQICRECGLGIALVSSTLAIMELRGQV-RSAGG 355
Query: 84 K 84
Sbjct: 356 M 356
>gi|292493777|ref|YP_003529216.1| DNA protecting protein DprA [Nitrosococcus halophilus Nc4]
gi|291582372|gb|ADE16829.1| DNA protecting protein DprA [Nitrosococcus halophilus Nc4]
Length = 368
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
S +D + E + L P+ ID ++ G+ A V +L
Sbjct: 284 PLVGSMADLQPQEKHKKIE-ESSRDPEYQILLDCLGYDPLPIDTLVERCGLTAEAVSSML 342
Query: 69 LELDLAGRLCHHPEGK 84
L L+L GR+ P G+
Sbjct: 343 LMLELQGRITALPGGR 358
>gi|332285820|ref|YP_004417731.1| hypothetical protein PT7_2567 [Pusillimonas sp. T7-7]
gi|330429773|gb|AEC21107.1| hypothetical protein PT7_2567 [Pusillimonas sp. T7-7]
Length = 389
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 3 HPQIEQN--FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P++ T + PE RI +++ P+ +D + T +
Sbjct: 299 QPKLTPGAALAGPPKSTAAAASSQPEASPEPNSQ---RILEAMGYDPVDLDTLQRRTQLN 355
Query: 61 APVVYLVLLELDLAGRLCHHPEGK 84
+ LL L+LA + +G+
Sbjct: 356 LSTLNSSLLMLELAETIARQDDGR 379
>gi|126737264|ref|ZP_01752999.1| DNA processing protein DprA, putative [Roseobacter sp. SK209-2-6]
gi|126721849|gb|EBA18552.1| DNA processing protein DprA, putative [Roseobacter sp. SK209-2-6]
Length = 423
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCE-------RVRIKQSLNNVPIHIDDI 53
++ + S+ + ++ P + +I L P+ D +
Sbjct: 321 LLQMPPAPRSPAGPSNAEARQLLSSLPVPPPEKRNLQETNALHQQILNRLGTTPVPADLL 380
Query: 54 IHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ P L +L+L GR+ P G ++
Sbjct: 381 MRDLNATPPQFGSALTDLELDGRIERLPGGLLT 413
>gi|319796459|ref|YP_004158099.1| DNA protecting protein dpra [Variovorax paradoxus EPS]
gi|315598922|gb|ADU39988.1| DNA protecting protein DprA [Variovorax paradoxus EPS]
Length = 383
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 28/77 (36%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ ++ + + H + +L P+ +D + TG A +
Sbjct: 300 EELPPLRTGNAASAQSSNGHAGNEAAVSEDPLLDALGFEPVSLDALSARTGWSAAALQAR 359
Query: 68 LLELDLAGRLCHHPEGK 84
+LEL+L G + P G
Sbjct: 360 MLELELDGHISRLPGGL 376
>gi|261856670|ref|YP_003263953.1| DNA protecting protein DprA [Halothiobacillus neapolitanus c2]
gi|261837139|gb|ACX96906.1| DNA protecting protein DprA [Halothiobacillus neapolitanus c2]
Length = 384
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E+ +I L P D +I +G+ V +LL L+LAG + P G
Sbjct: 328 DPEQQKILDCLGFDPQSADTLIASSGLTPAEVSSILLMLELAGHVTTLPGGL 379
>gi|297570259|ref|YP_003691603.1| DNA protecting protein DprA [Desulfurivibrio alkaliphilus AHT2]
gi|296926174|gb|ADH86984.1| DNA protecting protein DprA [Desulfurivibrio alkaliphilus AHT2]
Length = 381
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
E + L++ P I++II G+ A V VLLEL+L G + P
Sbjct: 323 PPLTNEAATVLAVLDDYPKAIEEIITQAGMAARQVNAVLLELELQGLIESEPG 375
>gi|209515835|ref|ZP_03264697.1| DNA protecting protein DprA [Burkholderia sp. H160]
gi|209503683|gb|EEA03677.1| DNA protecting protein DprA [Burkholderia sp. H160]
Length = 409
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ R+ +L + P ++ + T +E ++ VLL L+LAG + P G+ H
Sbjct: 352 SDTERLLAALGHSPTTLEILAARTEMEDAALHAVLLRLELAGEVTLLPGGRFMRAHHD 409
>gi|167834977|ref|ZP_02461860.1| DNA protecting protein DprA [Burkholderia thailandensis MSMB43]
Length = 396
Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 28/52 (53%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ R+ ++ P+ ++ + T + + ++ LL+L+LAGR+ P G+
Sbjct: 320 DDDARRLLAAIGYGPVPLELLAQRTALSSGALHRRLLQLELAGRIAALPGGR 371
>gi|225181360|ref|ZP_03734804.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
gi|225167941|gb|EEG76748.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
Length = 357
Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ ++L P H D+I G+ AP + L+EL+LAG L P
Sbjct: 306 ASVLETLQYEPAHFDEIADRCGLPAPQLAATLVELELAGLLRKLPGN 352
>gi|74316030|ref|YP_313770.1| SMF protein [Thiobacillus denitrificans ATCC 25259]
gi|74055525|gb|AAZ95965.1| SMF protein [Thiobacillus denitrificans ATCC 25259]
Length = 320
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
P + E + +L+ P +D + TG+ + LL L+L GR+ P G+
Sbjct: 259 PPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLLALELDGRIAALPGGR 315
>gi|187922315|ref|YP_001893957.1| DNA protecting protein DprA [Burkholderia phytofirmans PsJN]
gi|187713509|gb|ACD14733.1| DNA protecting protein DprA [Burkholderia phytofirmans PsJN]
Length = 422
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P S+++ E R+ +L + P ++ + T +E
Sbjct: 339 LQPTEASPAVSAEAPLAA------ATPCPPANPEAQRLLAALGHSPTTLEILATRTEMED 392
Query: 62 PVVYLVLLELDLAGRLCHHPEGK 84
+ LL+L+LAG + P G+
Sbjct: 393 ADLQTALLQLELAGHVTMLPGGR 415
>gi|225075474|ref|ZP_03718673.1| hypothetical protein NEIFLAOT_00479 [Neisseria flavescens
NRL30031/H210]
gi|224953193|gb|EEG34402.1| hypothetical protein NEIFLAOT_00479 [Neisseria flavescens
NRL30031/H210]
Length = 396
Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q E+ +++D + N+ P + + +++ PIH D + T A V
Sbjct: 316 QTERLQPKTRADEPQRPSENLPAAPSTS-----ALLEAMGYDPIHPDILAQQTNTAAADV 370
Query: 65 YLVLLELDLAGRLCHHPEGK 84
Y LLE +L G + P G+
Sbjct: 371 YAQLLEYELDGIVAALPGGR 390
>gi|186474805|ref|YP_001856275.1| DNA protecting protein DprA [Burkholderia phymatum STM815]
gi|184191264|gb|ACC69229.1| DNA protecting protein DprA [Burkholderia phymatum STM815]
Length = 389
Score = 42.3 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYT-QCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ E S H+ +I+ + R+ +L + P ++ + T ++
Sbjct: 300 PQTESVPRRCASPQTHSGDIDSRRENGPDLPDDARRLLDALGHSPTTLEILAERTDMDDT 359
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTMH 90
++ LL L+LAG LC P G+ +H
Sbjct: 360 LLQSTLLRLELAGELCALPGGRYVRAVH 387
>gi|314969050|gb|EFT13148.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA1]
Length = 252
Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
I SL P +D ++ TG + L +L+ G+L G
Sbjct: 10 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVRGG 54
>gi|34499722|ref|NP_903937.1| smf protein [Chromobacterium violaceum ATCC 12472]
gi|34105573|gb|AAQ61927.1| smf protein [Chromobacterium violaceum ATCC 12472]
Length = 359
Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ E + S+ P+ D + G+ VY +LLEL+LAGR+ P G+
Sbjct: 300 EEPETPPLLNSMGWEPVLADALAGTLGLTPGEVYAMLLELELAGRVASLPGGR 352
>gi|166713740|ref|ZP_02244947.1| DNA processing chain A [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 380
Score = 41.9 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ T + + R+ Q+L + PI +D ++ TG+ A + +LL
Sbjct: 302 RERLAAPTELPRKTTAGAGPARSDPDYQRLWQALGHDPIPMDSLVQRTGLTAAALSSMLL 361
Query: 70 ELDLAG 75
++L G
Sbjct: 362 IMELEG 367
>gi|15837526|ref|NP_298214.1| DNA processing chain A [Xylella fastidiosa 9a5c]
gi|9105845|gb|AAF83734.1|AE003931_11 DNA processing chain A [Xylella fastidiosa 9a5c]
Length = 387
Score = 41.9 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ D P + + Q+L + P+ +D +I TG+ A + +LL L
Sbjct: 311 RERLDAPSWPVAPSLSTPNSNDPKYHTLWQALAHDPMSMDSLIERTGLTAATLSSMLLTL 370
Query: 72 DLAGRL 77
+L G++
Sbjct: 371 ELEGKV 376
>gi|86137984|ref|ZP_01056560.1| DNA processing protein DprA, putative [Roseobacter sp. MED193]
gi|85825576|gb|EAQ45775.1| DNA processing protein DprA, putative [Roseobacter sp. MED193]
Length = 368
Score = 41.9 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L P D ++ + L EL+L G++ P G ++
Sbjct: 317 ILAGLGPSPTASDQLMRDLDLSPQAFAPALTELELEGKISRIPGGLLA 364
>gi|77166459|ref|YP_344984.1| SMF protein [Nitrosococcus oceani ATCC 19707]
gi|254435425|ref|ZP_05048932.1| DNA protecting protein DprA, putative [Nitrosococcus oceani AFC27]
gi|76884773|gb|ABA59454.1| DNA protecting protein DprA [Nitrosococcus oceani ATCC 19707]
gi|207088536|gb|EDZ65808.1| DNA protecting protein DprA, putative [Nitrosococcus oceani AFC27]
Length = 368
Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E + L P+ ID ++ G+ A V +LL L+L GR+ P G+
Sbjct: 306 DDLEYQLLLDCLGYDPLPIDLLVERCGLTAEAVSSMLLILELQGRITALPGGR 358
>gi|326791406|ref|YP_004309227.1| DNA protecting protein DprA [Clostridium lentocellum DSM 5427]
gi|326542170|gb|ADZ84029.1| DNA protecting protein DprA [Clostridium lentocellum DSM 5427]
Length = 362
Score = 41.9 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V IE+ F + K + E Q ER + ++ PI ++++++ T +
Sbjct: 277 VEDVIEELPFDLRIKYEEIKKNKTKKHYELAQEER-IVYAYVSQEPIFLNELVNSTQLSY 335
Query: 62 PVVYLVLLELDLAGRLCHHPEGK 84
+Y LL+L++ G + P +
Sbjct: 336 KSIYKGLLQLEIKGLIKRLPGER 358
>gi|288941785|ref|YP_003444025.1| DNA protecting protein DprA [Allochromatium vinosum DSM 180]
gi|288897157|gb|ADC62993.1| DNA protecting protein DprA [Allochromatium vinosum DSM 180]
Length = 377
Score = 41.9 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ+ ++ T + E+ R+ +SL + P+++D++ TG+
Sbjct: 292 LAPQLRAELAAADRSTPGARRAAAPPP--DLPPEQARLLESLGHDPVNLDELTERTGLAV 349
Query: 62 PVVYLVLLELDLAGRLCHHPEGK 84
+ +LL ++L G + P G+
Sbjct: 350 EQISSMLLLMELEGHVSCLPGGR 372
>gi|146329048|ref|YP_001209084.1| DNA processing protein DprA [Dichelobacter nodosus VCS1703A]
gi|146232518|gb|ABQ13496.1| DNA processing protein DprA [Dichelobacter nodosus VCS1703A]
Length = 382
Score = 41.9 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 2 VHPQIEQNFFSSQSDTNH--TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGI 59
+ P + N Q H +N TH R+ + P +DD++ T +
Sbjct: 291 LLPLAKANVELQQQFQPHHLPQNEPQTHQEYPANSLENRLLNIMGYDPWRVDDLVEKTHL 350
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGK 84
A + +LL L+L G + G+
Sbjct: 351 TAAEISAMLLMLELDGAVASLSGGR 375
>gi|238021547|ref|ZP_04601973.1| hypothetical protein GCWU000324_01447 [Kingella oralis ATCC 51147]
gi|237866161|gb|EEP67203.1| hypothetical protein GCWU000324_01447 [Kingella oralis ATCC 51147]
Length = 389
Score = 41.9 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHY-PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P+ + + T PE + + PIH D + T
Sbjct: 301 LKPKTHAAKPKPTLSQPLSTELPTTTPSPEPESTNEHPLLTKMGYDPIHPDTLAEQTEQP 360
Query: 61 APVVYLVLLELDLAGRLCHHPEGK 84
A +Y L E +L G + G+
Sbjct: 361 AADIYAQLTEWELDGIVASMAGGR 384
>gi|329851389|ref|ZP_08266146.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
gi|328840235|gb|EGF89807.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
Length = 372
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+++ P+ D++I G V L EL++AG + G V+
Sbjct: 323 RLRELAGATPVSRDELIRLAGAPVHVALSALCELEIAGLITEVEGGYVA 371
>gi|255261380|ref|ZP_05340722.1| DNA protecting protein DprA [Thalassiobium sp. R2A62]
gi|255103715|gb|EET46389.1| DNA protecting protein DprA [Thalassiobium sp. R2A62]
Length = 100
Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ Q + E T I L P+ + +I A +V L
Sbjct: 22 PAPTPQLELP--PQSEPRRLSE-TAALHSEILNRLGPSPLAENQLIRDLKSAAAIVTPAL 78
Query: 69 LELDLAGRLCHHPEGKVSLTMH 90
++L+L G++ G ++L++
Sbjct: 79 IDLELEGKITRQSGGLIALSVQ 100
>gi|332525406|ref|ZP_08401566.1| putative SMF protein [Rubrivivax benzoatilyticus JA2]
gi|332108675|gb|EGJ09899.1| putative SMF protein [Rubrivivax benzoatilyticus JA2]
Length = 365
Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L + P +D ++ TG + LLEL+L G+L P G
Sbjct: 304 PDADTPADPVLAALGHEPATLDALLARTGWPTAELSARLLELELDGQLARLPGGL 358
>gi|294507187|ref|YP_003571245.1| SMF protein [Salinibacter ruber M8]
gi|294343515|emb|CBH24293.1| SMF protein [Salinibacter ruber M8]
Length = 331
Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 21 KNINITHYPEYTQC---ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ I+ + T+ E R+ +L+ P+HID + TG+ LLEL+ G +
Sbjct: 261 ETISPGAGRDPTEELSGEAERLYDALSETPVHIDALCEETGLSPSEALPTLLELEFQGWV 320
Query: 78 CHHPE 82
Sbjct: 321 RQLAG 325
>gi|328954307|ref|YP_004371641.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109]
gi|328454631|gb|AEB10460.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109]
Length = 366
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + P + I L+N P+ +DD+I +G+ A V L L+L G +
Sbjct: 297 SPMMAEAKVPTPSARIEDPIIAHLSNAPVQLDDLIRTSGLAAGEVMSRLTLLELQGLVRE 356
Query: 80 HPE 82
P
Sbjct: 357 LPG 359
>gi|220933380|ref|YP_002512279.1| smf protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219994690|gb|ACL71292.1| smf protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 375
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
E + ++ P+ +D ++ TG+ V +LL ++L G++ G+ H P
Sbjct: 316 DSEHQALLDAMGYDPVTVDRLVSRTGLTVAAVSSMLLIMELRGQVVSLSGGR--YVRHQP 373
Query: 93 SP 94
P
Sbjct: 374 EP 375
>gi|224826192|ref|ZP_03699295.1| DNA protecting protein DprA [Lutiella nitroferrum 2002]
gi|224601829|gb|EEG08009.1| DNA protecting protein DprA [Lutiella nitroferrum 2002]
Length = 366
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
L P+ +D + + A VY +LLEL+L GR+ P G+
Sbjct: 320 LGYDPVDVDSLAARLELTAGEVYAMLLELELEGRVASLPGGR 361
>gi|304309701|ref|YP_003809299.1| SMF protein [gamma proteobacterium HdN1]
gi|301795434|emb|CBL43632.1| SMF protein [gamma proteobacterium HdN1]
Length = 419
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P+ E F ++++ T T E RI L P +DD++ T +
Sbjct: 335 EPETEDLFTTAEAHTPKGLQ-ATTKPSENHDTPEGRILALLYAEPHSVDDLVERTELGTA 393
Query: 63 VVYLVLLELDLAGRLCHHPE 82
+ L+ L+L GR+
Sbjct: 394 EINATLMMLELEGRIVQMSG 413
>gi|119896389|ref|YP_931602.1| putative DNA processing protein DrpA [Azoarcus sp. BH72]
gi|119668802|emb|CAL92715.1| putative DNA processing protein DrpA [Azoarcus sp. BH72]
Length = 372
Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + + P+ I+ ++ +G+ +Y +LL ++L GR+ +
Sbjct: 323 VLALIGHEPVDIELLVQRSGLTVDALYAILLPMELDGRIGRCAGSR 368
>gi|182416693|ref|ZP_02948094.1| DNA uptake protein [Clostridium butyricum 5521]
gi|237667207|ref|ZP_04527191.1| DNA protecting protein DprA [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379455|gb|EDT76948.1| DNA uptake protein [Clostridium butyricum 5521]
gi|237655555|gb|EEP53111.1| DNA protecting protein DprA [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 353
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ NI P ++ RI L +VP+HIDD+ T E +Y +L E+ + + P
Sbjct: 286 DHNIEIRPMIKSPDKRRILNCLTDVPMHIDDVFRKTNFERGALYALLFEMQIKDEIICLP 345
Query: 82 EG 83
Sbjct: 346 GN 347
>gi|319639529|ref|ZP_07994276.1| SMF-family protein [Neisseria mucosa C102]
gi|317399100|gb|EFV79774.1| SMF-family protein [Neisseria mucosa C102]
Length = 396
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ +D + N + +++ PIH D + T A VY LLE
Sbjct: 322 PKAIADEPQRPSEN-----PPAASSTSTLLEAMGYDPIHSDILAQQTNTAAADVYAQLLE 376
Query: 71 LDLAGRLCHHPEGK 84
+L G + P G+
Sbjct: 377 YELDGIVAALPGGR 390
>gi|126733565|ref|ZP_01749312.1| DNA processing protein DprA, putative [Roseobacter sp. CCS2]
gi|126716431|gb|EBA13295.1| DNA processing protein DprA, putative [Roseobacter sp. CCS2]
Length = 379
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L + PI D ++ + A + VL++L+L G++ G ++
Sbjct: 327 SEILSRLGSAPIAEDQLLRDIKVAATEIAPVLVDLELEGKITRQSGGLLA 376
>gi|16126686|ref|NP_421250.1| dprA protein [Caulobacter crescentus CB15]
gi|221235465|ref|YP_002517902.1| DNA processing protein [Caulobacter crescentus NA1000]
gi|13423992|gb|AAK24418.1| dprA protein [Caulobacter crescentus CB15]
gi|220964638|gb|ACL95994.1| DNA processing protein [Caulobacter crescentus NA1000]
Length = 365
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
++ S S H + + + R R+ L+ P+ +D++ A
Sbjct: 280 EDVLRSLSGQTHLREQDRAYEALPDMDIDHDALRERVAALLSPTPVSRNDLVRAAAAPAS 339
Query: 63 VVYLVLLELDLAGRLCHHPEGKVS 86
V L+EL LA R G V+
Sbjct: 340 AVMAALVELSLARRAELLDGGMVA 363
>gi|254483307|ref|ZP_05096538.1| DNA protecting protein DprA [marine gamma proteobacterium HTCC2148]
gi|214036402|gb|EEB77078.1| DNA protecting protein DprA [marine gamma proteobacterium HTCC2148]
Length = 301
Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
++ PE + + + L I +D ++ +G+ V L L+LAGR+
Sbjct: 232 ELSQVSTIPSPESISEQDCLLLELLGFEVISLDQLVVASGLPVGQVMGELSSLELAGRVN 291
Query: 79 HHPEGKV 85
P G +
Sbjct: 292 RCPGGYI 298
>gi|302342564|ref|YP_003807093.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
gi|301639177|gb|ADK84499.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
Length = 376
Score = 41.6 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
++ + ++ ER + + P H+D +I +G++A V LL L+L
Sbjct: 303 RAPSPARPRALLSQDDGLLPEERA-LLALVGPEPTHVDQLIRRSGLDAQSVAHHLLNLEL 361
Query: 74 AGRLCHHPEGKVSLT 88
A R+ + L
Sbjct: 362 AERVRQLAGKRYELA 376
>gi|95929065|ref|ZP_01311810.1| DNA processing protein DprA, putative [Desulfuromonas acetoxidans
DSM 684]
gi|95134966|gb|EAT16620.1| DNA processing protein DprA, putative [Desulfuromonas acetoxidans
DSM 684]
Length = 363
Score = 41.6 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ + F + T P + + + L P H+D + +G+
Sbjct: 277 QPQDILDHFGLTEHNIAVEENEPTVPPLSNSQD--MVLRKLGKTPRHLDKLATESGLTPM 334
Query: 63 VVYLVLLELDLAGRLCHHPEG 83
V ++L L+L G P G
Sbjct: 335 EVSAIVLHLELLGLAQSLPGG 355
>gi|33599233|ref|NP_886793.1| hypothetical protein BB0244 [Bordetella bronchiseptica RB50]
gi|33575279|emb|CAE30742.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 370
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+H+D + TG++A + LLEL+L GR+ G+
Sbjct: 320 LLDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGR 365
>gi|33594956|ref|NP_882599.1| hypothetical protein BPP0240 [Bordetella parapertussis 12822]
gi|33565032|emb|CAE39981.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 370
Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+H+D + TG++A + LLEL+L GR+ G+
Sbjct: 320 LLDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGR 365
>gi|33591759|ref|NP_879403.1| hypothetical protein BP0555 [Bordetella pertussis Tohama I]
gi|33571402|emb|CAE44883.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381176|gb|AEE66023.1| hypothetical protein BPTD_0564 [Bordetella pertussis CS]
Length = 370
Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L P+H+D + TG++A + LLEL+L GR+ G+
Sbjct: 320 LLDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGR 365
>gi|118578968|ref|YP_900218.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
gi|118501678|gb|ABK98160.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
Length = 371
Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
S + E + + L P+HIDDII T + A V +LL
Sbjct: 297 VPSGAVSPPPEPRVFALTPREAG------VYELLARGPLHIDDIIVQTELTAAEVSSMLL 350
Query: 70 ELDLAGRLCHHPE 82
L+L G + P
Sbjct: 351 HLELKGAVTPLPG 363
>gi|114570266|ref|YP_756946.1| DNA protecting protein DprA [Maricaulis maris MCS10]
gi|114340728|gb|ABI66008.1| DNA protecting protein DprA [Maricaulis maris MCS10]
Length = 387
Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R++ L+ P+ D++ + V +L+E++++G + P+G V
Sbjct: 333 ERLRALLSPAPVSGDELARAADLPIGEVQAMLMEMEMSGEIATLPDGLV 381
>gi|295696103|ref|YP_003589341.1| DNA protecting protein DprA [Bacillus tusciae DSM 2912]
gi|295411705|gb|ADG06197.1| DNA protecting protein DprA [Bacillus tusciae DSM 2912]
Length = 384
Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 28/79 (35%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
E + + + I + R+ +L D I TG+ +
Sbjct: 297 AEYPHWPAALAASADGEIENQVPRRTVDSDSRRVLAALEEGCRTPDLIAGRTGLRLEHIS 356
Query: 66 LVLLELDLAGRLCHHPEGK 84
VL +L+LAGR+ P G
Sbjct: 357 RVLTDLELAGRIYREPGGL 375
>gi|71898891|ref|ZP_00681058.1| SMF protein [Xylella fastidiosa Ann-1]
gi|71731303|gb|EAO33367.1| SMF protein [Xylella fastidiosa Ann-1]
Length = 381
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ D + P + + Q+L + P+ +D +I TG+ A + +LL L
Sbjct: 305 RERLDAPSWPGAPLLSTPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLTAATLSSMLLTL 364
Query: 72 DLAGRL 77
+L G++
Sbjct: 365 ELEGKV 370
>gi|84501687|ref|ZP_00999859.1| DNA processing protein DprA, putative [Oceanicola batsensis
HTCC2597]
gi|84390308|gb|EAQ02867.1| DNA processing protein DprA, putative [Oceanicola batsensis
HTCC2597]
Length = 77
Score = 41.2 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
D T + R I L PI D +I A V + +L++
Sbjct: 2 LDLPETPAPEARDPAQTAALHRE-ILDRLGPAPIAEDQLIRDLSRAARHVTPAITQLEMQ 60
Query: 75 GRLCHHPEGKVSL 87
GR+ G ++L
Sbjct: 61 GRVRRQAGGLLAL 73
>gi|296134587|ref|YP_003641829.1| DNA protecting protein DprA [Thiomonas intermedia K12]
gi|295794709|gb|ADG29499.1| DNA protecting protein DprA [Thiomonas intermedia K12]
Length = 379
Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ T P E I ++L DD+ TG A + LLEL
Sbjct: 301 RPAAKTTTEDASPAAEAPPEGDTE-CDILRALGYDIRSFDDLSARTGWPADRLGARLLEL 359
Query: 72 DLAGRLCHHPEGK 84
+L G++ P G+
Sbjct: 360 ELQGQVARLPGGR 372
>gi|261368262|ref|ZP_05981145.1| DNA protecting protein DprA [Subdoligranulum variabile DSM 15176]
gi|282569777|gb|EFB75312.1| DNA protecting protein DprA [Subdoligranulum variabile DSM 15176]
Length = 366
Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 20/70 (28%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+ P + + L ID + TG+ A V EL+L
Sbjct: 293 LAAGAEEKEPAEFSPASVSADARAVYAKLGPTAQGIDALCAATGLPANRVLAACTELELF 352
Query: 75 GRLCHHPEGK 84
G P +
Sbjct: 353 GGAQAQPGRR 362
>gi|83814168|ref|YP_445312.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
gi|83755562|gb|ABC43675.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
Length = 388
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
E E R+ +L+ P+HID + TG+ LLEL+ G +
Sbjct: 328 PTEELSGEAERLYDALSETPVHIDALCEETGLSPSEALPTLLELEFQGWVRQLAG 382
>gi|325925738|ref|ZP_08187113.1| putative Rossmann fold nucleotide-binding protein involved in DNA
uptake [Xanthomonas perforans 91-118]
gi|325543866|gb|EGD15274.1| putative Rossmann fold nucleotide-binding protein involved in DNA
uptake [Xanthomonas perforans 91-118]
Length = 264
Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ ++ + P + + R+ Q+L + P +D ++ TG+ A + +LL +
Sbjct: 188 AAPTELPSKATTSAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTGLTAAALSSMLLIM 247
Query: 72 DLAG 75
+L G
Sbjct: 248 ELEG 251
>gi|167585075|ref|ZP_02377463.1| DNA protecting protein DprA [Burkholderia ubonensis Bu]
Length = 327
Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 11 FSSQSDTNHTKNINITHYPEY----TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
D + + P + +L P+ + + +G+ ++
Sbjct: 229 PEDVLDEYGLRAESPGDAPPAAATSGDAAEQAVLAALGYGPVTYEWLAERSGLSDDALHR 288
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
LL L+LAGR+ G+ +PQ
Sbjct: 289 ALLALELAGRVASVAGGRFVRLGGPAAPQ 317
>gi|296161361|ref|ZP_06844168.1| DNA protecting protein DprA [Burkholderia sp. Ch1-1]
gi|295888347|gb|EFG68158.1| DNA protecting protein DprA [Burkholderia sp. Ch1-1]
Length = 421
Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E R+ +L + P ++ + T +E + LL+L+LAG++ P G+
Sbjct: 363 DPEAERLLTALGHSPTTLEILATRTEMEDAALQSTLLQLELAGQVTVLPGGR 414
>gi|150016069|ref|YP_001308323.1| DNA protecting protein DprA [Clostridium beijerinckii NCIMB 8052]
gi|149902534|gb|ABR33367.1| DNA protecting protein DprA [Clostridium beijerinckii NCIMB 8052]
Length = 351
Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
H + + PE ++ I + + + PIHIDDI +T ++ +Y +L E+ +
Sbjct: 282 LSLEHIEIQPMNFTPEKSE-----ILELITDSPIHIDDIFKNTSVDRGALYALLFEMQIK 336
Query: 75 GRLCHHPEG 83
+ P
Sbjct: 337 SEIICLPGN 345
>gi|99082178|ref|YP_614332.1| DNA processing protein DprA, putative [Ruegeria sp. TM1040]
gi|99038458|gb|ABF65070.1| DNA processing protein DprA putative [Ruegeria sp. TM1040]
Length = 382
Score = 40.8 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 18 NHTKNINITHYPEYTQCE-------RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ P + +I L P +I G A V VL +
Sbjct: 304 PQRPSVQDLPSPPPERRNLRQTAALHQQILDRLAAAPTPEGQLIKDLGSPARKVRTVLTD 363
Query: 71 LDLAGRLCHHPEGKV 85
L+L+G + P G +
Sbjct: 364 LELSGEIGREPGGVI 378
>gi|28199636|ref|NP_779950.1| DNA processing chain A [Xylella fastidiosa Temecula1]
gi|182682381|ref|YP_001830541.1| DNA protecting protein DprA [Xylella fastidiosa M23]
gi|28057751|gb|AAO29599.1| DNA processing chain A [Xylella fastidiosa Temecula1]
gi|182632491|gb|ACB93267.1| DNA protecting protein DprA [Xylella fastidiosa M23]
gi|307578663|gb|ADN62632.1| DNA protecting protein DprA [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 381
Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ D + P + + Q+L + P+ +D +I TG+ A + +LL L
Sbjct: 305 RERLDAPSWPVAPLLSTPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLTAATLSSMLLTL 364
Query: 72 DLAGRL 77
+L G++
Sbjct: 365 ELEGKV 370
>gi|194367359|ref|YP_002029969.1| DNA protecting protein DprA [Stenotrophomonas maltophilia R551-3]
gi|194350163|gb|ACF53286.1| DNA protecting protein DprA [Stenotrophomonas maltophilia R551-3]
Length = 375
Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 1 MVHPQIEQNFFSSQSD-TNHTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ P + Q QS T+ P + + ++L++ P +D +I
Sbjct: 285 LLAPALRQQLPGLQSRLATPTEQAPPALLPARWADDPDYQCLWRALDHNPSGMDSLITRC 344
Query: 58 GIEAPVVYLVLLELDLAG 75
G+ A V +LL ++LAG
Sbjct: 345 GLTASQVSSMLLAMELAG 362
>gi|114776898|ref|ZP_01451941.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1]
gi|114552984|gb|EAU55415.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1]
Length = 369
Score = 40.4 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 34/91 (37%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + E+ + T ++ E I ++ +H+D + G+
Sbjct: 276 ILLERAEELLVQLGLHADKTTQLHAGKQYHPADAEEAGILMAMRGEAVHLDLLAETCGLT 335
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
P + +LL L+L G + P + L L
Sbjct: 336 LPELSPILLRLELQGVIERLPGSRYLLATEL 366
>gi|91790470|ref|YP_551422.1| DNA processing protein DprA [Polaromonas sp. JS666]
gi|91699695|gb|ABE46524.1| DNA protecting protein DprA [Polaromonas sp. JS666]
Length = 374
Score = 40.4 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ +L + +D + TG++ + LLEL+L+G++ P G
Sbjct: 322 LMTALGFDAVSLDALQARTGLDTARLQADLLELELSGQVTRLPGGL 367
>gi|94266973|ref|ZP_01290622.1| SMF protein [delta proteobacterium MLMS-1]
gi|93452328|gb|EAT02959.1| SMF protein [delta proteobacterium MLMS-1]
Length = 381
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + + + I T E + +L+ P I++II +
Sbjct: 293 LASPLTARFLPAKPAAASSAAAITTTPEATPANAEEQALLATLDGYPRDIEEIIAACRLP 352
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
AP V +LLEL++ G + P
Sbjct: 353 APKVNALLLELEIRGLVESAPG 374
>gi|94263095|ref|ZP_01286914.1| SMF protein [delta proteobacterium MLMS-1]
gi|93456638|gb|EAT06746.1| SMF protein [delta proteobacterium MLMS-1]
Length = 381
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + + + T E + +L+ P I++II +
Sbjct: 293 LASPLTARFLPAKPATASSAAAPTTTPEATPANAEEQALLATLDGYPRDIEEIIAACRLP 352
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
AP V +LLEL++ G + P
Sbjct: 353 APKVNALLLELEIRGLVESAPG 374
>gi|298370610|ref|ZP_06981925.1| smf protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298281220|gb|EFI22710.1| smf protein [Neisseria sp. oral taxon 014 str. F0314]
Length = 393
Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ P+H D + A VY LLEL+L G++ G+
Sbjct: 342 LLDAMGYDPVHPDTLAQQLQFPAADVYAELLELELDGKVASLAGGR 387
>gi|224369818|ref|YP_002603982.1| DprA [Desulfobacterium autotrophicum HRM2]
gi|223692535|gb|ACN15818.1| DprA [Desulfobacterium autotrophicum HRM2]
Length = 372
Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I L P+HID I+ T ++ + LL+L+L G + P S+
Sbjct: 321 IVTILEPYPLHIDKIVEKTDLDIASISAALLDLELKGMVRQLPGKLFSI 369
>gi|71276451|ref|ZP_00652727.1| SMF protein [Xylella fastidiosa Dixon]
gi|71901276|ref|ZP_00683375.1| SMF protein [Xylella fastidiosa Ann-1]
gi|170731002|ref|YP_001776435.1| DNA processing chain A [Xylella fastidiosa M12]
gi|71162767|gb|EAO12493.1| SMF protein [Xylella fastidiosa Dixon]
gi|71728967|gb|EAO31099.1| SMF protein [Xylella fastidiosa Ann-1]
gi|167965795|gb|ACA12805.1| DNA processing chain A [Xylella fastidiosa M12]
Length = 381
Score = 40.4 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ D + P + + Q+L + P+ +D +I TG+ A + +LL L
Sbjct: 305 RERLDAPSWPVAPLLSTPNSKDPKYHTLWQALAHDPMSMDSLIGRTGLTAATLSSMLLTL 364
Query: 72 DLAGRL 77
+L G++
Sbjct: 365 ELEGKV 370
>gi|261380552|ref|ZP_05985125.1| DNA processing protein DprA [Neisseria subflava NJ9703]
gi|284796520|gb|EFC51867.1| DNA processing protein DprA [Neisseria subflava NJ9703]
Length = 396
Score = 40.4 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ +D + N++ P + + +++ PIH D + T A VY LLE
Sbjct: 322 PKTIADEPQRPSENLSAAPSTS-----ALLEAMGYDPIHPDILAQQTNTAAADVYAQLLE 376
Query: 71 LDLAGRLCHHPEGK 84
+L G + P G+
Sbjct: 377 YELDGIVAALPGGR 390
>gi|88811386|ref|ZP_01126641.1| SMF protein [Nitrococcus mobilis Nb-231]
gi|88791275|gb|EAR22387.1| SMF protein [Nitrococcus mobilis Nb-231]
Length = 371
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
R+ +L P+ D ++ TG+ + +LL+L+L G + P G+
Sbjct: 317 RVLAALGYDPVPADVLLQRTGLTPDTLSAMLLQLELMGYVATCPGGR 363
>gi|300770008|ref|ZP_07079887.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762484|gb|EFK59301.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33861]
Length = 370
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + ++ P E+ +I Q L P ID+I H + + + LLEL+
Sbjct: 290 EQEQQQKPSAQLSLLPPQLSEEQEKIYQFLQQQNPAPIDEIAIHCALPQSQLAISLLELE 349
Query: 73 LAGRLCHHPE 82
+ G + P
Sbjct: 350 MEGIILSMPG 359
>gi|258517150|ref|YP_003193372.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
gi|257780855|gb|ACV64749.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
Length = 368
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+N + P +Q E+ I L+ +P ++ + G + +L ++L G++
Sbjct: 299 EAHRNKRVNEIPPLSQIEKE-IYDHLSPIPQSVEQLAGILGSNPSALLRILCAMELEGKI 357
Query: 78 CHHPEGKV 85
G V
Sbjct: 358 ELLAGGMV 365
>gi|227538460|ref|ZP_03968509.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241646|gb|EEI91661.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33300]
Length = 370
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + ++ P E+ +I Q L P ID+I H + + + LLEL+
Sbjct: 290 EQEQQQKPSAQLSLLPPQLSEEQEKIYQFLQQQNPAPIDEIAIHCALPQSQLAISLLELE 349
Query: 73 LAGRLCHHPE 82
+ G + P
Sbjct: 350 MEGIILSMPG 359
>gi|254524568|ref|ZP_05136623.1| DNA processing chain A [Stenotrophomonas sp. SKA14]
gi|219722159|gb|EED40684.1| DNA processing chain A [Stenotrophomonas sp. SKA14]
Length = 375
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 1 MVHPQIEQNFFSSQSDT-NHTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ P + Q QS T+ P + + ++L++ P +D +I
Sbjct: 285 LLAPALRQQLPGLQSRLGTPTEQAPPALLPARWADDPDYQCLWRALDHNPSGMDSLITRC 344
Query: 58 GIEAPVVYLVLLELDLAG 75
G+ AP V +LL ++LAG
Sbjct: 345 GLTAPQVSSMLLAMELAG 362
>gi|125972980|ref|YP_001036890.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405]
gi|256004777|ref|ZP_05429752.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360]
gi|281417191|ref|ZP_06248211.1| DNA protecting protein DprA [Clostridium thermocellum JW20]
gi|125713205|gb|ABN51697.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405]
gi|255991227|gb|EEU01334.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360]
gi|281408593|gb|EFB38851.1| DNA protecting protein DprA [Clostridium thermocellum JW20]
gi|316940784|gb|ADU74818.1| DNA protecting protein DprA [Clostridium thermocellum DSM 1313]
Length = 370
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
F + + KN+ + ++ + L +HID+I TG +V +L+
Sbjct: 291 FIEENTKVSFNKNLQDERILRGLDNDEKKVVECLKLESMHIDNIARKTGFGIQLVNSILV 350
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
L+L G + P L +
Sbjct: 351 MLELKGVVEQLPGKIFKLKL 370
>gi|220931596|ref|YP_002508504.1| DNA protecting protein DprA [Halothermothrix orenii H 168]
gi|219992906|gb|ACL69509.1| DNA protecting protein DprA [Halothermothrix orenii H 168]
Length = 409
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P E+ S + N +T E ++ L +HI+ II TG +A
Sbjct: 316 PTAEKPLIKSYNRKNTGDKSTVTEDYSSLSPEEKKVVSILQGEDLHINQIITLTGFDASQ 375
Query: 64 VYLVLLELDLAG 75
V +LL L+L G
Sbjct: 376 VNKILLNLELKG 387
>gi|307728141|ref|YP_003905365.1| DNA protecting protein DprA [Burkholderia sp. CCGE1003]
gi|307582676|gb|ADN56074.1| DNA protecting protein DprA [Burkholderia sp. CCGE1003]
Length = 433
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + R+ +L + P ++ + T ++ V+ LL+L+LAG + P G+
Sbjct: 371 EPDAQRLLAALGHAPTSLEILATRTEMDYAVLQATLLQLELAGHVSALPGGR 422
>gi|332531649|ref|ZP_08407546.1| DNA protecting protein dpra [Hylemonella gracilis ATCC 19624]
gi|332039012|gb|EGI75441.1| DNA protecting protein dpra [Hylemonella gracilis ATCC 19624]
Length = 416
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + +L P+ +D + TG + L+ L+L G + P G +
Sbjct: 357 GSEPQDALLAALGADPVSLDALQARTGWPTAQLQAKLMALELNGEVARMPGGLL 410
>gi|254415891|ref|ZP_05029648.1| DNA protecting protein DprA, putative [Microcoleus chthonoplastes
PCC 7420]
gi|196177318|gb|EDX72325.1| DNA protecting protein DprA, putative [Microcoleus chthonoplastes
PCC 7420]
Length = 374
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
PE ++ Q L P +D I+ TG+ V VLL+L+L G
Sbjct: 308 EPEPVKATPKLAPEL-----AKVFQVLGIEPTPLDVIVQETGMTVAEVSGVLLQLELEGL 362
Query: 77 LCHHPE 82
+ P
Sbjct: 363 VSQLPG 368
>gi|92114982|ref|YP_574910.1| DNA processing protein DprA, putative [Chromohalobacter salexigens
DSM 3043]
gi|91798072|gb|ABE60211.1| DNA protecting protein DprA [Chromohalobacter salexigens DSM 3043]
Length = 371
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q + E + L+ P +D ++ + ++ + LLEL+L
Sbjct: 295 QWQAPQAVVASTDDMTEAANAPADPLLALLDTAPTPLDVLVERSELDVGGCQMRLLELEL 354
Query: 74 AGRLCHHPEGKVSLTMH 90
AG+ G V H
Sbjct: 355 AGQAAQVSGGWVRRATH 371
>gi|78049484|ref|YP_365659.1| DNA processing chain A [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78037914|emb|CAJ25659.1| DNA processing chain A [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 381
Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ ++ + P + + R+ Q+L + P +D ++ TG+ + +LL +
Sbjct: 305 AAPTELPSKATTSAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTGLTVAALSSMLLIM 364
Query: 72 DLAG 75
+L G
Sbjct: 365 ELEG 368
>gi|221214667|ref|ZP_03587637.1| DNA protecting protein DprA [Burkholderia multivorans CGD1]
gi|221165557|gb|EED98033.1| DNA protecting protein DprA [Burkholderia multivorans CGD1]
Length = 510
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +L P+ + + G+ ++ LL L+LAGR+ P G+ P+P
Sbjct: 445 VLTALGYGPVTYEWLAERCGLPDDTLHRALLALELAGRVAPLPGGRYGRLDGPPNP 500
>gi|188993327|ref|YP_001905337.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
B100]
gi|167735087|emb|CAP53299.1| DNA processing chain A [Xanthomonas campestris pv. campestris]
Length = 378
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 9 NFFSSQSDTNHTKNINITHY-PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + + + P + + R+ +L + P +D ++ TG+ A + +
Sbjct: 298 DALRQRLTAPTEQARTVPQPTPRRSDPDYQRLWHALGHDPTPMDSLLERTGLTAAALSSM 357
Query: 68 LLELDLAG 75
LL ++L G
Sbjct: 358 LLIMELEG 365
>gi|190576009|ref|YP_001973854.1| putative Smf protein [Stenotrophomonas maltophilia K279a]
gi|190013931|emb|CAQ47571.1| putative Smf protein [Stenotrophomonas maltophilia K279a]
Length = 375
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 1 MVHPQIEQNFFSSQSDT-NHTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ P + Q QS T+ P + + ++L++ P +D +I
Sbjct: 285 LLAPALRQQLPGLQSRLGTPTEQAPPALLPARWADDPDYQCLWRALDHDPSSMDSLITRC 344
Query: 58 GIEAPVVYLVLLELDLAG 75
G+ AP V +LL ++LAG
Sbjct: 345 GLTAPQVSSMLLAMELAG 362
>gi|21233179|ref|NP_639096.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66770119|ref|YP_244881.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
8004]
gi|21115029|gb|AAM43008.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66575451|gb|AAY50861.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
8004]
Length = 378
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 9 NFFSSQSDTNHTKNINITHY-PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + + + P + + R+ +L + P +D ++ TG+ A + +
Sbjct: 298 DALRQRLTAPTEQARTVPQPTPRRSDPDYQRLWHALGHDPTPMDSLLERTGLTAAALSSM 357
Query: 68 LLELDLAG 75
LL ++L G
Sbjct: 358 LLIMELEG 365
>gi|221201857|ref|ZP_03574894.1| DNA protecting protein DprA [Burkholderia multivorans CGD2M]
gi|221207637|ref|ZP_03580645.1| DNA protecting protein DprA [Burkholderia multivorans CGD2]
gi|221172483|gb|EEE04922.1| DNA protecting protein DprA [Burkholderia multivorans CGD2]
gi|221178277|gb|EEE10687.1| DNA protecting protein DprA [Burkholderia multivorans CGD2M]
Length = 478
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +L P+ + + G+ ++ LL L+LAGR+ P G+ P+P
Sbjct: 413 VLTALGYGPVTYEWLAERCGLPDDALHRALLALELAGRVAPLPGGRYGRLDGPPNP 468
>gi|192360468|ref|YP_001984037.1| smf protein [Cellvibrio japonicus Ueda107]
gi|190686633|gb|ACE84311.1| smf protein [Cellvibrio japonicus Ueda107]
Length = 387
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 31/72 (43%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S+ + ++ +++ P++ID ++ T ++A ++ L+ L
Sbjct: 309 SAVKQVQPLPTASTNMPLAELDPAATQLLEAMGYDPVNIDTLVERTSLDAGIIAAQLVSL 368
Query: 72 DLAGRLCHHPEG 83
+L+G +C G
Sbjct: 369 ELSGAICTIAGG 380
>gi|170079101|ref|YP_001735739.1| DNA protecting protein [Synechococcus sp. PCC 7002]
gi|169886770|gb|ACB00484.1| DNA protecting protein [Synechococcus sp. PCC 7002]
Length = 381
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ+ +F + + + E + + Q++ P D I+ +G+ A
Sbjct: 301 PQLSLSFPEPAVEPTPQPSTDFRQISP----ELLPLWQAIAPEPTAFDLIVVQSGMGADQ 356
Query: 64 VYLVLLELDLAGRLCHHPEGK 84
V LL+ +L G + P +
Sbjct: 357 VSATLLQWELEGFITQLPGMR 377
>gi|325983535|ref|YP_004295937.1| DNA protecting protein DprA [Nitrosomonas sp. AL212]
gi|325533054|gb|ADZ27775.1| DNA protecting protein DprA [Nitrosomonas sp. AL212]
Length = 365
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S T + E + L ++ID + +G+ A VV +LL L+
Sbjct: 289 SHLALIDTPSDRKKESSPGQSTENSLLLSHLGYDTVNIDTLCARSGLTAEVVSAMLLTLE 348
Query: 73 LAGRLCHHPEG 83
L G++ P G
Sbjct: 349 LDGQISSLPGG 359
>gi|289664811|ref|ZP_06486392.1| DNA processing chain A [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 254
Score = 39.2 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + R+ Q+L + P +D ++ TG+ A + +LL ++L G
Sbjct: 198 SDPDYQRLWQALGHDPTSMDSLVQRTGLTAAALSSMLLIMELEG 241
>gi|307543966|ref|YP_003896445.1| DNA processing protein [Halomonas elongata DSM 2581]
gi|307215990|emb|CBV41260.1| K04096 DNA processing protein [Halomonas elongata DSM 2581]
Length = 366
Score = 39.2 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
P+ + L++ P +D ++ TG+ P LL L+L GR
Sbjct: 294 APVVNRRAPEAAPDADP-----VLAWLSDTPTPVDALVDLTGLAVPDCQRRLLALELEGR 348
Query: 77 LCHHPEGKVSL 87
G V L
Sbjct: 349 ASQAAGGWVRL 359
>gi|75909996|ref|YP_324292.1| SMF protein [Anabaena variabilis ATCC 29413]
gi|75703721|gb|ABA23397.1| SMF protein [Anabaena variabilis ATCC 29413]
Length = 372
Score = 39.2 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D ++ E R+ +++ + D II TG+ A V LL+L+
Sbjct: 297 PQLDVVDKSSVPEQLSLPTLSPELQRVLDTISFDALPFDLIIQQTGMNAGSVSSALLQLE 356
Query: 73 LAGRLCHHPEGK 84
L G + P +
Sbjct: 357 LMGIVSQLPGMR 368
>gi|294625232|ref|ZP_06703872.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600460|gb|EFF44557.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 381
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
P + + R+ Q+L + P +D ++ TG+ A + +LL ++L G
Sbjct: 322 PARSDPDYQRLWQALGHDPTPMDSLVQRTGLTAATLSSMLLIMELEG 368
>gi|188574931|ref|YP_001911860.1| DNA protecting protein DprA [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519383|gb|ACD57328.1| DNA protecting protein DprA [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 311
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ T + + R+ Q+L + P +D ++ T + A + +LL
Sbjct: 233 RERLAAPTELPRKTTAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTELTAAALSSMLL 292
Query: 70 ELDLAG 75
++L G
Sbjct: 293 IMELEG 298
>gi|117926935|ref|YP_867552.1| DNA protecting protein DprA [Magnetococcus sp. MC-1]
gi|117610691|gb|ABK46146.1| DNA protecting protein DprA [Magnetococcus sp. MC-1]
Length = 365
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ +L + + +D ++ + + LL+L+L G + G ++L
Sbjct: 310 ASVVAALGDGALTVDGLLRLCHLTPAELSSTLLQLELCGIITREMGGTLALV 361
>gi|325518085|gb|EGC97880.1| SMF protein [Burkholderia sp. TJI49]
Length = 116
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +L P+ + + H+G+ ++ LL L+LAG + P G+ + +P+P
Sbjct: 51 VLAALGYGPVTYEWLAEHSGLPDDDLHRALLALELAGHVAPLPGGRFARLDAVPTP 106
>gi|171915689|ref|ZP_02931159.1| hypothetical protein VspiD_31000 [Verrucomicrobium spinosum DSM
4136]
Length = 345
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEA 61
P+++ S D N+ +T RV I +L PIH ++ TG
Sbjct: 151 RPRVQLRGMSGPPDHRQIANLVVTLRSLIGVSARVEIILALAGGSPIHASELARMTGYAP 210
Query: 62 PVVYLVLLELDLAGRL 77
+ +L E+ L+G L
Sbjct: 211 RTLQTLLQEMTLSGHL 226
>gi|152980408|ref|YP_001351831.1| DNA processing protein [Janthinobacterium sp. Marseille]
gi|151280485|gb|ABR88895.1| DNA processing protein [Janthinobacterium sp. Marseille]
Length = 371
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 9/72 (12%), Positives = 20/72 (27%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + S+ + D + ++ ++ LL L+
Sbjct: 295 EELEYAVIPAAPGERATPPADAPYAHVLHSMGYDAVDADTLAQRCQLDIAEIHTHLLTLE 354
Query: 73 LAGRLCHHPEGK 84
L G P G
Sbjct: 355 LDGHTEILPGGL 366
>gi|285019620|ref|YP_003377331.1| DNA processing chain a protein [Xanthomonas albilineans GPE PC73]
gi|283474838|emb|CBA17337.1| putative dna processing chain a protein [Xanthomonas albilineans]
Length = 384
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ P++ + + Q+L + P+ +D +I +G+ A V +LL ++L G
Sbjct: 315 QGTTVERRTTPDFPNPDYQNLWQALGHDPLCMDSLITRSGLTAAAVSSMLLTMELDG 371
>gi|148265710|ref|YP_001232416.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
gi|146399210|gb|ABQ27843.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
Length = 359
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 15 SDTNHTKNINITHYPEYTQC---ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + P + + I L P+HIDDII + + V +LL L
Sbjct: 283 EELPQRSKVVAHADPLPSFSLTPQEAGIYTLLAESPLHIDDIIVKSELTVGDVSAILLRL 342
Query: 72 DLAGRLCHHPEGKVSLT 88
+L G + P ++T
Sbjct: 343 ELKGAVMQLPGKHFAIT 359
>gi|289667881|ref|ZP_06488956.1| DNA processing chain A [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 251
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + R+ Q+L + P +D ++ TG+ A + +LL ++L G
Sbjct: 195 SDPDYQRLWQALGHDPTSMDSLVQRTGLTAAALSSMLLIMELEG 238
>gi|58580206|ref|YP_199222.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84622201|ref|YP_449573.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58424800|gb|AAW73837.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84366141|dbj|BAE67299.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 380
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ T + + R+ Q+L + P +D ++ T + A + +LL
Sbjct: 302 RERLAAPTELPRKTTAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTELTAAALSSMLL 361
Query: 70 ELDLAG 75
++L G
Sbjct: 362 IMELEG 367
>gi|134093406|ref|YP_001098481.1| putative nucleotide-binding protein involved in DNA uptake (Smf
protein) [Herminiimonas arsenicoxydans]
gi|133737309|emb|CAL60352.1| putative DNA protecting protein DprA [Herminiimonas arsenicoxydans]
Length = 372
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 26/77 (33%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
Q+ N + +I Q+L P+ D + ++ ++
Sbjct: 291 QDILEELQYALPAANAASKSVAPALDAQAQQILQALGFDPVDADTLAARCQLDMATLHAQ 350
Query: 68 LLELDLAGRLCHHPEGK 84
LL L+L+ +L P
Sbjct: 351 LLMLELSNQLEILPGAL 367
>gi|224535809|ref|ZP_03676348.1| hypothetical protein BACCELL_00673 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522532|gb|EEF91637.1| hypothetical protein BACCELL_00673 [Bacteroides cellulosilyticus
DSM 14838]
Length = 81
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 31 YTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
Y + + RI + + +DDII H+G + VY L EL+ +G L
Sbjct: 7 YKEIDTQRIIDYIGTFANGVSVDDIILHSGADKLRVYPALFELEQSGWLE 56
>gi|254430794|ref|ZP_05044497.1| bacterial regulatory protein, ArsR family [Cyanobium sp. PCC
7001]
gi|197625247|gb|EDY37806.1| bacterial regulatory protein, ArsR family [Cyanobium sp. PCC
7001]
Length = 101
Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP-EGKV 85
++ +++ R+ + ++L + P+++ ++ TG+ +V L L +AG + P V
Sbjct: 7 YFKVFSEPNRLAVLEALRHGPLNVTAVVERTGLSQALVSKHLKLLTIAGVVQRRPEGALV 66
Query: 86 SLTMHLPS 93
++ P+
Sbjct: 67 YYAVNDPA 74
>gi|87124524|ref|ZP_01080373.1| Bacterial regulatory proteins, ArsR family protein [Synechococcus
sp. RS9917]
gi|86168096|gb|EAQ69354.1| Bacterial regulatory proteins, ArsR family protein [Synechococcus
sp. RS9917]
Length = 101
Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ +++ R+ + ++L + PI++ ++ TG+ +V L L +AG + PEG S
Sbjct: 7 YFKVFSEPNRLAVLEALRDGPINVTAVVEKTGLSQALVSKHLKLLTIAGVVERRPEG--S 64
Query: 87 LTMHL 91
L +
Sbjct: 65 LVFYD 69
>gi|222054654|ref|YP_002537016.1| DNA protecting protein DprA [Geobacter sp. FRC-32]
gi|221563943|gb|ACM19915.1| DNA protecting protein DprA [Geobacter sp. FRC-32]
Length = 359
Score = 38.9 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
I L P+HIDDII + + P + +LL L+L G + P S+T
Sbjct: 309 IFTLLAESPLHIDDIIVRSELTVPDLSAILLRLELKGAVVQLPGKHFSIT 358
>gi|218440245|ref|YP_002378574.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424]
gi|218172973|gb|ACK71706.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424]
Length = 374
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + ++ +++ D I+ TG+ V +LL+L+L G + P +
Sbjct: 314 PTPQLEPQLAQVFEAVGIEATPFDLIVQQTGLSTGEVSGILLQLELLGIVSQLPGMR 370
>gi|237746965|ref|ZP_04577445.1| DNA processing protein [Oxalobacter formigenes HOxBLS]
gi|229378316|gb|EEO28407.1| DNA processing protein [Oxalobacter formigenes HOxBLS]
Length = 373
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 26/79 (32%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ Q+ N + + I + P+ D + I+A +
Sbjct: 287 ETSQDVLEELKHYNSVSESSDRKMEPENTSLQEDILLQMGFDPVDSDTLCERCEIDAASL 346
Query: 65 YLVLLELDLAGRLCHHPEG 83
+ LL L+LAG + G
Sbjct: 347 NVELLSLELAGEVESLAGG 365
>gi|307151412|ref|YP_003886796.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822]
gi|306981640|gb|ADN13521.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822]
Length = 402
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
Q + + I P+ + + + Q++ P D I+ TG+ V LL+L
Sbjct: 327 EKQKQLSIFEQTPIKAMPDLS-IQLTEVLQAVGVEPTAFDLIVQKTGLCTGEVSAALLQL 385
Query: 72 DLAGRLCHHPEGK 84
+L G + P +
Sbjct: 386 ELFGVIAQLPGMR 398
>gi|294338533|emb|CAZ86862.1| Protein smf (DNA-processing chain A) [Thiomonas sp. 3As]
Length = 379
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ T P E I ++L DD+ TG A + LLEL
Sbjct: 301 RPAAKTTTADASPAAEAPPECDTE-CDILRTLGYDIRSFDDLSARTGWPADRLGARLLEL 359
Query: 72 DLAGRLCHHPEGK 84
+L G++ P G+
Sbjct: 360 ELEGQVARLPGGR 372
>gi|89902621|ref|YP_525092.1| DNA processing protein DprA [Rhodoferax ferrireducens T118]
gi|89347358|gb|ABD71561.1| DNA processing protein DprA, putative [Rhodoferax ferrireducens
T118]
Length = 409
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ P+ +D + GI+ + L+ L+L G L P G
Sbjct: 355 AVLLDAIGFDPVGLDALQARCGIDTAGLQAQLMTLELDGLLVRLPGGL 402
>gi|153869947|ref|ZP_01999450.1| DNA processing chain A [Beggiatoa sp. PS]
gi|152073589|gb|EDN70552.1| DNA processing chain A [Beggiatoa sp. PS]
Length = 420
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + +R+ L P ID+++ +G+ A + +LL L+L G + G
Sbjct: 361 EPDYIRLLGYLEAGPTSIDNLVEQSGLTAGDISSMLLILELRGLVATQSGGL 412
>gi|301058272|ref|ZP_07199312.1| DNA protecting protein DprA [delta proteobacterium NaphS2]
gi|300447606|gb|EFK11331.1| DNA protecting protein DprA [delta proteobacterium NaphS2]
Length = 369
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+T + + + +++ + + N P+HID I ++A V +VLL+++L G
Sbjct: 297 ETGTIDRNQKSLPSGHMEGVELKLYEIIGNYPMHIDQIARTGDMDAGQVAMVLLKMELNG 356
Query: 76 RLCHHPE 82
+ P
Sbjct: 357 TVRQLPG 363
>gi|294101717|ref|YP_003553575.1| transcriptional regulator, IclR family [Aminobacterium
colombiense DSM 12261]
gi|293616697|gb|ADE56851.1| transcriptional regulator, IclR family [Aminobacterium
colombiense DSM 12261]
Length = 259
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 39 IKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
I ++L P+ I +I TG+ + ++L L+ G L P+
Sbjct: 17 IVEALGKEKTPLGIGEISRLTGLSKSTTHRLVLTLESRGWLKRLPDN 63
>gi|148269810|ref|YP_001244270.1| DNA protecting protein DprA [Thermotoga petrophila RKU-1]
gi|147735354|gb|ABQ46694.1| DNA protecting protein DprA [Thermotoga petrophila RKU-1]
Length = 337
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
++ +I L + P +D+++ G V V+ E++L G
Sbjct: 275 RIASPSLDDDKKKIYDLLRSSPKTVDELVEELGWSVSEVLRVISEMELMG 324
>gi|281412306|ref|YP_003346385.1| DNA protecting protein DprA [Thermotoga naphthophila RKU-10]
gi|281373409|gb|ADA66971.1| DNA protecting protein DprA [Thermotoga naphthophila RKU-10]
Length = 337
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
++ +I L + P +D+++ G V V+ E++L G
Sbjct: 275 RIASPSLDDDKKKIYDLLRSSPKTVDELVEELGWSVSEVLRVISEMELMG 324
>gi|325913840|ref|ZP_08176199.1| DNA protecting protein DprA [Xanthomonas vesicatoria ATCC 35937]
gi|325539915|gb|EGD11552.1| DNA protecting protein DprA [Xanthomonas vesicatoria ATCC 35937]
Length = 378
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 9 NFFSSQSDTN-HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
N + + R+ Q+L + P +D ++ TG+ A + +
Sbjct: 298 NALRERLAAPTQVPRTTRAITSTRPDPDYQRLWQALGHDPTPMDSLVERTGLTAAALSSM 357
Query: 68 LLELDLAG 75
LL ++L G
Sbjct: 358 LLIMELEG 365
>gi|325924331|ref|ZP_08185875.1| DNA protecting protein DprA [Xanthomonas gardneri ATCC 19865]
gi|325545196|gb|EGD16506.1| DNA protecting protein DprA [Xanthomonas gardneri ATCC 19865]
Length = 378
Score = 38.5 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ +D T T P+ + R+ Q+L + P +D ++ TG+ A + +LL +
Sbjct: 305 AAPTDQARTAPKASTARPDP---DYQRLWQALGHDPTPMDALVERTGLTAATLSSMLLIM 361
Query: 72 DLAG 75
+L G
Sbjct: 362 ELEG 365
>gi|308188322|ref|YP_003932453.1| Protein smf [Pantoea vagans C9-1]
gi|308058832|gb|ADO11004.1| Protein smf [Pantoea vagans C9-1]
Length = 374
Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+Q+D +++ + P + ++ + +D + G PV+ LL
Sbjct: 290 LPVAQADEIYSEVRDDAPLPF------ADVLANVGDDVTPVDVVAERAGQSVPVISAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|15643022|ref|NP_228064.1| DNA processing chain A [Thermotoga maritima MSB8]
gi|170288496|ref|YP_001738734.1| DNA protecting protein DprA [Thermotoga sp. RQ2]
gi|4980749|gb|AAD35341.1|AE001708_9 DNA processing chain A [Thermotoga maritima MSB8]
gi|170175999|gb|ACB09051.1| DNA protecting protein DprA [Thermotoga sp. RQ2]
Length = 337
Score = 38.5 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
++ +I L + P +D+++ G V V+ E++L G
Sbjct: 275 RIASPSLDDDKKKIYDLLRSSPKTVDELVEELGWSVSEVLRVISEMELMG 324
>gi|254463787|ref|ZP_05077198.1| DNA protecting protein DprA [Rhodobacterales bacterium Y4I]
gi|206684695|gb|EDZ45177.1| DNA protecting protein DprA [Rhodobacterales bacterium Y4I]
Length = 365
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L P +++ + + L +L+L G + P G + S
Sbjct: 309 QILGRLGPSPTSETELMRGLALPPHELAPALTDLELEGAILRQPGGLLCKAFPDDS 364
>gi|302877265|ref|YP_003845829.1| DNA protecting protein DprA [Gallionella capsiferriformans ES-2]
gi|302580054|gb|ADL54065.1| DNA protecting protein DprA [Gallionella capsiferriformans ES-2]
Length = 360
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ T + + + P+ ID + +G+ + +LL L+L G + P G
Sbjct: 295 PPVQAAKPTPAPHAVLLEQMGFDPVGIDALCLRSGLTVSQLSAMLLTLELEGCIATLPGG 354
Query: 84 K 84
Sbjct: 355 L 355
>gi|332711096|ref|ZP_08431030.1| DNA protecting protein DprA [Lyngbya majuscula 3L]
gi|332350078|gb|EGJ29684.1| DNA protecting protein DprA [Lyngbya majuscula 3L]
Length = 377
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 13 SQSDTNHTKNINITHYPEYT-QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ D + + P T + ++ ++ P D I+ +EA V LL+L
Sbjct: 298 PELDPHSALEQPLPALPVPTLEPALAKVLDAIAFEPTSFDIIVQQAALEAGSVSSALLQL 357
Query: 72 DLAGRLCHHPEGK 84
+L G + P +
Sbjct: 358 ELMGLVSQAPGMR 370
>gi|206890890|ref|YP_002248891.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742828|gb|ACI21885.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 368
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCER----VRIKQSLNNVPIHIDDIIHHTGIE 60
++E + K I E T+ +R +I ++ N P+++D+II TG+
Sbjct: 281 KVEDILEEIEQFIPLLKKITTELSNETTKTDRLDNDEKIVFNILNEPLYLDEIILKTGMN 340
Query: 61 APVVYLVLLELDLAGRLCHHPEGKV 85
V +LL L++ G + V
Sbjct: 341 TAKVLEILLSLEIDGLINKIEGKYV 365
>gi|91203661|emb|CAJ71314.1| strongly similar to competence protein DprA [Candidatus Kuenenia
stuttgartiensis]
Length = 367
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+I L++ PI+ID+II T + + +V L+ L++
Sbjct: 317 KIFSLLSSAPIYIDEIIQSTKLPSSIVSSTLMILEI 352
>gi|91774545|ref|YP_544301.1| DNA processing protein DprA, putative [Methylobacillus flagellatus
KT]
gi|91708532|gb|ABE48460.1| DNA protecting protein DprA [Methylobacillus flagellatus KT]
Length = 336
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 8 QNFFSSQSDTN-HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
Q+ F + T P + + + ++L P+ +D + +G+ +
Sbjct: 256 QDIFEEMKMFPKPIPDAIDTVQPAGSVHDP--LLEALGYDPVSLDTLAARSGLTTERLSA 313
Query: 67 VLLELDLAGRLCHHPEGK 84
+LL L+L G++ P G+
Sbjct: 314 MLLVLELEGKVTSLPGGR 331
>gi|284044019|ref|YP_003394359.1| DeoR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283948240|gb|ADB50984.1| transcriptional regulator, DeoR family [Conexibacter woesei DSM
14684]
Length = 254
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
Q + RI ++L P + + G+ V LLEL+ GRL G VS H
Sbjct: 3 AQQRQDRIARTLRAEGPAAVSTLAERLGVSQATVRRDLLELERQGRLTRVYGGAVSSAEH 62
Query: 91 L 91
Sbjct: 63 D 63
>gi|183982751|ref|YP_001851042.1| acyl-CoA transferase/dehydratase [Mycobacterium marinum M]
gi|183176077|gb|ACC41187.1| acyl-CoA transferase/dehydratase [Mycobacterium marinum M]
Length = 812
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 1 MVHPQIEQNFFSSQSDTN--HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDII 54
M HP I + + H P+ Q R + L+ P I+ +I
Sbjct: 731 MTHPLIARPLPAETGPAPFRHIPQSPQRPAPQPGQDTREICAELLDMSPEEIEFLI 786
>gi|147677580|ref|YP_001211795.1| Rossmann fold nucleotide-binding protein [Pelotomaculum
thermopropionicum SI]
gi|146273677|dbj|BAF59426.1| predicted Rossmann fold nucleotide-binding protein [Pelotomaculum
thermopropionicum SI]
Length = 367
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 15 SDTNHTKNINITHYPEYTQC-----ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
D +N+ E + E + L+ P+ +D+II +G+ L+
Sbjct: 284 LDEIGLENLFPVKKDEPGEAVKMSREEEAVYSLLSVDPVPLDEIIGRSGLTPQKAMAALM 343
Query: 70 ELDLAGRLCHHPE 82
L+L G P
Sbjct: 344 YLELKGLARQMPG 356
>gi|294664415|ref|ZP_06729772.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292605821|gb|EFF49115.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 138
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
P + + R+ Q+L + P +D ++ TG+ A + +LL ++L G
Sbjct: 79 PARSDPDYQRLWQALGHDPTPMDSLVQRTGLTAATLSSMLLIMELEG 125
>gi|77918023|ref|YP_355838.1| Rossmann-fold nucleotide-binding protein [Pelobacter carbinolicus
DSM 2380]
gi|77544106|gb|ABA87668.1| DNA protecting protein DprA [Pelobacter carbinolicus DSM 2380]
Length = 366
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
++ Q+L + P+H+D++ G+ V +LL L+L
Sbjct: 313 KVYQALQDTPLHVDELARKCGLTPMEVSAILLHLEL 348
>gi|257789779|ref|YP_003180385.1| transcriptional regulator, TrmB [Eggerthella lenta DSM 2243]
gi|257473676|gb|ACV53996.1| transcriptional regulator, TrmB [Eggerthella lenta DSM 2243]
Length = 371
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +Q ++ P +Q ER + L+ + + D+ TG+
Sbjct: 277 PQHGAPAHRAQGMDMQAQHAMAPLIPPLSQRERDFLPIFLSEGALGVTDLSRLTGVPQSS 336
Query: 64 VYLVLLELDLAGRLCHHPEGK 84
Y+ L +L+ AG + K
Sbjct: 337 TYVALSKLEEAGLIEKTVGQK 357
>gi|314922642|gb|EFS86473.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL001PA1]
Length = 268
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVKSTGVSAMTIYRDLASLESSGVLQRHRGRVVAVA 69
>gi|282853012|ref|ZP_06262349.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|282582465|gb|EFB87845.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|314965725|gb|EFT09824.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA2]
gi|314982866|gb|EFT26958.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA3]
gi|315091177|gb|EFT63153.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA4]
gi|315094405|gb|EFT66381.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL060PA1]
gi|315105128|gb|EFT77104.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA2]
gi|327328903|gb|EGE70663.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL103PA1]
Length = 268
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVKSTGVSAMTIYRDLASLESSGVLQRHRGRVVAVA 69
>gi|317489242|ref|ZP_07947759.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
gi|325832279|ref|ZP_08165278.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Eggerthella sp. HGA1]
gi|316911643|gb|EFV33235.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
gi|325486115|gb|EGC88569.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Eggerthella sp. HGA1]
Length = 382
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 31/81 (38%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +Q ++ P +Q ER + L+ + + D+ TG+
Sbjct: 288 PQHGAPAHRAQGMDMQAQHAMAPLIPPLSQRERDFLPIFLSEGALGVTDLSRLTGVPQSS 347
Query: 64 VYLVLLELDLAGRLCHHPEGK 84
Y+ L +L+ AG + K
Sbjct: 348 TYVALSKLEEAGLIEKTVGQK 368
>gi|313835211|gb|EFS72925.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA2]
gi|314929183|gb|EFS93014.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL044PA1]
gi|314970866|gb|EFT14964.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA3]
Length = 278
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 39 VSVEDLVEATGVSAMTIYRDLASLEASGVLQRHRGRVVAVA 79
>gi|320161003|ref|YP_004174227.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
gi|319994856|dbj|BAJ63627.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
Length = 370
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+I ++L P+HID+I + V +L ++L G L H + +++
Sbjct: 303 PADPLEEKILKALEQQPLHIDEISIAIDLPVEQVSAILTFMELKG-LVRHLGTMIYASLY 361
Query: 91 LPS 93
S
Sbjct: 362 DSS 364
>gi|161526294|ref|YP_001581306.1| DNA protecting protein DprA [Burkholderia multivorans ATCC 17616]
gi|189348992|ref|YP_001944620.1| DNA processing protein [Burkholderia multivorans ATCC 17616]
gi|160343723|gb|ABX16809.1| DNA protecting protein DprA [Burkholderia multivorans ATCC 17616]
gi|189333014|dbj|BAG42084.1| DNA processing protein [Burkholderia multivorans ATCC 17616]
Length = 425
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +L P+ + + G+ ++ LL L+LAGR+ G+ P+P
Sbjct: 360 VLTALGYGPVTYEWLAERCGLPDDTLHRALLALELAGRVAPLAGGRYGRLDGPPNP 415
>gi|328905756|gb|EGG25532.1| DeoR family transcriptional regulator [Propionibacterium sp. P08]
Length = 271
Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 32 VSVEDLVEATGVSAMTIYRDLASLEASGVLQRHRGRVVAVA 72
>gi|289432565|ref|YP_003462438.1| DNA protecting protein DprA [Dehalococcoides sp. GT]
gi|288946285|gb|ADC73982.1| DNA protecting protein DprA [Dehalococcoides sp. GT]
Length = 373
Score = 38.1 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + N T I L P+HID I + +V L ++
Sbjct: 286 EELNISLFSEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGTLAIME 345
Query: 73 LAGRLCHHPEGK 84
L G++ G
Sbjct: 346 LKGQV-RSTGGM 356
>gi|73748517|ref|YP_307756.1| putative DNA processing protein DprA [Dehalococcoides sp. CBDB1]
gi|73660233|emb|CAI82840.1| putative DNA processing protein DprA [Dehalococcoides sp. CBDB1]
Length = 383
Score = 38.1 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + N T I L P+HID I + +V L ++
Sbjct: 296 EELNISLFSEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGTLAIME 355
Query: 73 LAGRLCHHPEGK 84
L G++ G
Sbjct: 356 LKGQV-RSTGGM 366
>gi|325109981|ref|YP_004271049.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305]
gi|324970249|gb|ADY61027.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305]
Length = 389
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P+ E S +D N + Q + I L++ P+HID +I +G+E
Sbjct: 304 RPRTEGTAVSPAADPNGQEVRAPRELVLSDQQK--AILNLLHDEPVHIDRVIDQSGLEPS 361
Query: 63 VVYLVLLELDLAGRLCHHPEGKVS 86
V L L++ + P +S
Sbjct: 362 RVLSTLTVLEMKRLVKRLPGNYLS 385
>gi|258517114|ref|YP_003193336.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771]
gi|257780819|gb|ACV64713.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771]
Length = 748
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+N + P +Q E+ I L+ +P ++ + G + +L ++L G++
Sbjct: 679 EAHRNKRVNEIPPLSQIEKE-IYDHLSPIPQSVEQLAGILGSNPSALLRILCVMELEGKI 737
Query: 78 CHHPEGK 84
G
Sbjct: 738 ELFAGGM 744
>gi|147669298|ref|YP_001214116.1| DNA protecting protein DprA [Dehalococcoides sp. BAV1]
gi|146270246|gb|ABQ17238.1| DNA protecting protein DprA [Dehalococcoides sp. BAV1]
Length = 373
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + N T I L P+HID I + +V L ++
Sbjct: 286 EELNISLFSEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGTLAIME 345
Query: 73 LAGRLCHHPEGK 84
L G++ G
Sbjct: 346 LKGQV-RSTGGM 356
>gi|255531337|ref|YP_003091709.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
gi|255344321|gb|ACU03647.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
Length = 363
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
K+ + P E +I L PI ID+I + + LL L++ G L
Sbjct: 296 KSSSQLQLPVGLSDEEQKIVNILTATPIGIDEIGQQLNFSQSKLAMHLLSLEMQGILVAL 355
Query: 81 PE 82
P
Sbjct: 356 PG 357
>gi|240170501|ref|ZP_04749160.1| acyl-CoA transferase/dehydratase [Mycobacterium kansasii ATCC
12478]
Length = 797
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 1 MVHPQIEQNFFSSQSDTN--HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTG 58
MVHP I + + H + P+ Q R ++ L P HI+ +I
Sbjct: 731 MVHPLIARQMPAETGPAPFRHIPHAPQRPAPQAGQDTRAICQELLGMSPEHIEQLIAEGV 790
Query: 59 IEAPV 63
+ A
Sbjct: 791 LFAAA 795
>gi|332830027|gb|EGK02655.1| hypothetical protein HMPREF9455_00905 [Dysgonomonas gadei ATCC
BAA-286]
Length = 373
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 35 ERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E I L + +HID + I A ++ LLEL++ G + + P +L
Sbjct: 319 EEKIITDKLGTIDSLHIDQLARELNIPAYQLFTTLLELEMKGLIKNLPGNMYALA 373
>gi|146308631|ref|YP_001189096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
ymp]
gi|189040321|sp|A4XYE8|RLME_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|145576832|gb|ABP86364.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas mendocina ymp]
Length = 207
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHI---DDIIHHTGIEAP----VVYLV 67
+ + ++ RI +++ P+ + D + +G+ A +YL
Sbjct: 82 LEMDSIPDVTFIQGDFTDDAVFARILEAIGENPVDLVISDMAPNMSGVRAADQPRAMYLC 141
Query: 68 LLELDLAGRLCHHPEG 83
L LDLAGR+
Sbjct: 142 ELALDLAGRVLRPGGD 157
>gi|119509167|ref|ZP_01628318.1| SMF protein [Nodularia spumigena CCY9414]
gi|119466333|gb|EAW47219.1| SMF protein [Nodularia spumigena CCY9414]
Length = 372
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ DT T I E ++ ++ + + D ++ TG+ V LL+L+
Sbjct: 297 PKIDTIDTPPIPEQLNLPKLSSELQQVMDAIASDVLPFDYLVQKTGMNTGSVSSALLQLE 356
Query: 73 LAGRLCHHPEGK 84
L G + P +
Sbjct: 357 LMGLVSQLPGMR 368
>gi|293602355|ref|ZP_06684801.1| DNA protecting protein DprA [Achromobacter piechaudii ATCC 43553]
gi|292819117|gb|EFF78152.1| DNA protecting protein DprA [Achromobacter piechaudii ATCC 43553]
Length = 370
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ P+H+D I +GI + L+EL+L GRL +G+
Sbjct: 320 VLDAMGYDPLHLDAIFARSGIAIDALQAQLVELELQGRLARLDDGR 365
>gi|241760431|ref|ZP_04758525.1| DNA protecting protein DprA [Neisseria flavescens SK114]
gi|241319100|gb|EER55593.1| DNA protecting protein DprA [Neisseria flavescens SK114]
Length = 396
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ D + N+ P + + +++ PIH D + T A VY LLE
Sbjct: 322 PKTIVDEPQRPSENLPAAPLTS-----ALLEAMGYDPIHPDILAQQTNTAAADVYAQLLE 376
Query: 71 LDLAGRLCHHPEGK 84
+L G + P G+
Sbjct: 377 YELDGIVAALPGGR 390
>gi|186682634|ref|YP_001865830.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102]
gi|186465086|gb|ACC80887.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102]
Length = 371
Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D T P + E + + + + D I+ TG+ A V LL+L+
Sbjct: 297 PQIDRVETSTAPEQLMPTLSP-ELQTVMDAFTSDALPFDFIVEQTGMAAGSVSGALLQLE 355
Query: 73 LAGRLCHHPEGK 84
L G + P +
Sbjct: 356 LMGLVLQLPGMR 367
>gi|221135273|ref|ZP_03561576.1| hypothetical protein GHTCC_10125 [Glaciecola sp. HTCC2999]
Length = 370
Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAP 62
E + S+ + ++ + E + S+ I++I H+ + P
Sbjct: 282 EIDDIESEMMEVEKPRHHPIYFSTKNKTEENLSPSNLLDSVGYEITAIENIAAHSSLPLP 341
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTMH 90
V LLE +L+G++ G V L
Sbjct: 342 QVLAQLLEFELSGKVAAVAGGYVKLRSD 369
>gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
Length = 382
Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
K I T E I + P+HID + TGIE + + L E++L
Sbjct: 310 ATPEKTIPDTPVRVPLTPEETIILDHFSEEPLHIDMLAEKTGIEPSELLVHLFEMELKNL 369
Query: 77 LCHHPEGK 84
+ P
Sbjct: 370 IEQQPGQM 377
>gi|17228820|ref|NP_485368.1| DNA processing protein [Nostoc sp. PCC 7120]
gi|17130672|dbj|BAB73282.1| DNA processing protein [Nostoc sp. PCC 7120]
Length = 372
Score = 37.7 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
D ++ E R+ +++ + D II TG+ A V LL+L+
Sbjct: 297 PHLDVVDKSSVPEQLSLPTLSPELQRVLDTISFDALPFDLIIQQTGMNAGSVSSALLQLE 356
Query: 73 LAGRLCHHPEGK 84
L G + P +
Sbjct: 357 LMGIVSQLPGMR 368
>gi|304399255|ref|ZP_07381121.1| DNA protecting protein DprA [Pantoea sp. aB]
gi|304353181|gb|EFM17562.1| DNA protecting protein DprA [Pantoea sp. aB]
Length = 374
Score = 37.3 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++Q+D +++ + P + ++ + +D + G PV+ LL
Sbjct: 290 LPATQADEIYSEVSDDAPLPF------ADVLANVGDDVTPVDVVAERAGQSVPVISAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|253700153|ref|YP_003021342.1| DNA protecting protein DprA [Geobacter sp. M21]
gi|251775003|gb|ACT17584.1| DNA protecting protein DprA [Geobacter sp. M21]
Length = 359
Score = 37.3 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V +E+ Q++ K + P+ + + L + IDDII + + A
Sbjct: 278 VEDILEELGLEPQANLPLPKPSSFELTPQEAE-----LYALLCQGALQIDDIIVQSALTA 332
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
V LL L++ G + P + ++
Sbjct: 333 SEVSATLLRLEMKGAIVQLPGKRFAVA 359
>gi|114462408|gb|ABI75144.1| SMF protein [Anabaena circinalis AWQC131C]
Length = 310
Score = 37.3 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQI+ + + N+ +I L + D II TG+ A +
Sbjct: 235 PQIDIETETPLVKSPPIPNLAPEL---------QQIINILAVDALSFDFIIQKTGMNAAI 285
Query: 64 VYLVLLELDLAGRLCHHPEGK 84
V LL+L+L G + P +
Sbjct: 286 VSSSLLQLELMGLVTQLPGMR 306
>gi|264668112|gb|ACY71500.1| SMF protein [Anabaena circinalis AWQC310F]
Length = 208
Score = 37.3 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQI+ + + N+ +I L + D II TG+ A +
Sbjct: 133 PQIDIETETPLVKSPPIPNLAPEL---------QQIINILAIDALSFDFIIQKTGMNAAI 183
Query: 64 VYLVLLELDLAGRLCHHPEGK 84
V LL+L+L G + P +
Sbjct: 184 VSSSLLQLELMGLVTQLPGMR 204
>gi|300115534|ref|YP_003762109.1| DNA protecting protein DprA [Nitrosococcus watsonii C-113]
gi|299541471|gb|ADJ29788.1| DNA protecting protein DprA [Nitrosococcus watsonii C-113]
Length = 368
Score = 37.3 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
E + + L P+ ID ++ G+ A V +LL L+L G + P G
Sbjct: 306 DDPEYRLLLECLGYDPLPIDRLVERCGLTAEAVSSMLLVLELQGCITALPGG 357
>gi|291612478|ref|YP_003522635.1| DNA protecting protein DprA [Sideroxydans lithotrophicus ES-1]
gi|291582590|gb|ADE10248.1| DNA protecting protein DprA [Sideroxydans lithotrophicus ES-1]
Length = 354
Score = 37.3 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
L P+ +D ++ +G+ + +LL+L+L G + P G
Sbjct: 308 LGFEPLDVDALMQLSGLTIAELSAILLQLELDGHIASLPGGL 349
>gi|254422740|ref|ZP_05036458.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335]
gi|196190229|gb|EDX85193.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335]
Length = 411
Score = 37.3 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNV-----------PIHIDDIIHHTGIEAPVV 64
DT N+ + E + + L V P +D I+ T +E +V
Sbjct: 328 DTKAVGNLETSEALEINSTDLKKAISELTPVLANVLEAVAIEPTIVDYIVQQTQMETGIV 387
Query: 65 YLVLLELDLAGRLCHHPE 82
L +L+L+G + P
Sbjct: 388 LSALFQLELSGMVIQLPG 405
>gi|53803082|ref|YP_115235.1| DNA processing protein DprA [Methylococcus capsulatus str. Bath]
gi|53756843|gb|AAU91134.1| putative DNA processing protein DprA [Methylococcus capsulatus str.
Bath]
Length = 364
Score = 37.3 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 23/67 (34%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
E RI + P +D ++ TG A ++ L+ L++ G
Sbjct: 292 AGFVDRQERLPVVPPADAEAARILAHIAYAPTSVDTLVAATGYTANLIASKLVLLEMEGH 351
Query: 77 LCHHPEG 83
+ P G
Sbjct: 352 VAAAPGG 358
>gi|299531888|ref|ZP_07045288.1| DNA protecting protein DprA [Comamonas testosteroni S44]
gi|298720063|gb|EFI61020.1| DNA protecting protein DprA [Comamonas testosteroni S44]
Length = 397
Score = 36.9 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S++++ N P+ + Q+L + P+ ++ + TG +A + L+EL
Sbjct: 324 STRAEPAQEAAKNKASTPD------NPLLQALGHDPMTLESLSDRTGWDAAHLQAQLMEL 377
Query: 72 DLAGRLCHHPEGK 84
+L G + P G
Sbjct: 378 ELDGLVARLPGGL 390
>gi|294789444|ref|ZP_06754681.1| putative DNA processing protein DprA [Simonsiella muelleri ATCC
29453]
gi|294482657|gb|EFG30347.1| putative DNA processing protein DprA [Simonsiella muelleri ATCC
29453]
Length = 421
Score = 36.9 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ N +H D I T I +Y +LLE +LAG + G+
Sbjct: 371 VLNAMGNEIVHPDFIAEKTNIPTDEIYAILLECELAGWVMATAGGR 416
>gi|152994061|ref|YP_001338896.1| DNA protecting protein DprA [Marinomonas sp. MWYL1]
gi|150834985|gb|ABR68961.1| DNA protecting protein DprA [Marinomonas sp. MWYL1]
Length = 442
Score = 36.9 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVL 68
+ +++ N H + + + ++ P+ D +I + ++A ++ VL
Sbjct: 364 NQTAESMPVLVSNQVHALPESTSDNAKAVIAIMEQEAQPMDFDALIRQSKMDAGLMMQVL 423
Query: 69 LELDLAGRLCHHPE 82
+EL+L G + +
Sbjct: 424 MELELYGCVENREG 437
>gi|294678614|ref|YP_003579229.1| DNA protecting protein DprA [Rhodobacter capsulatus SB 1003]
gi|294477434|gb|ADE86822.1| DNA protecting protein DprA [Rhodobacter capsulatus SB 1003]
Length = 383
Score = 36.9 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
L P D +I GI+A + ++ L++ G + HP G +S
Sbjct: 338 LGPAPTPEDTVIRDLGIDAATLSREVIGLEIEGEITRHPGGLLS 381
>gi|21244527|ref|NP_644109.1| DNA processing chain A [Xanthomonas axonopodis pv. citri str. 306]
gi|21110199|gb|AAM38645.1| DNA processing chain A [Xanthomonas axonopodis pv. citri str. 306]
Length = 381
Score = 36.9 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
P + + R+ Q+L++ P +D ++ TG+ A + +LL ++L G
Sbjct: 322 PARSDPDYQRLWQALDHDPTPMDSLVQRTGLTAAALSSMLLIMELEG 368
>gi|264680867|ref|YP_003280777.1| DNA protecting protein DprA [Comamonas testosteroni CNB-2]
gi|262211383|gb|ACY35481.1| DNA protecting protein DprA [Comamonas testosteroni CNB-2]
Length = 397
Score = 36.9 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S++++ N P+ + Q+L + P+ ++ + TG +A + L+EL
Sbjct: 324 STRAEPAQEAAKNKASTPD------NPLLQALGHDPMTLESLSDRTGWDAAHLQAQLMEL 377
Query: 72 DLAGRLCHHPEGK 84
+L G + P G
Sbjct: 378 ELDGLVARLPGGL 390
>gi|258545463|ref|ZP_05705697.1| DNA processing protein DprA [Cardiobacterium hominis ATCC 15826]
gi|258519296|gb|EEV88155.1| DNA processing protein DprA [Cardiobacterium hominis ATCC 15826]
Length = 369
Score = 36.9 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
+E+ + ++++ + + E T + + +++ P +DD++ +
Sbjct: 284 QDVLEELYPLARANLE-MQIQSAPPAAETTDNDSHPLLEAMGFDPCRVDDLVARLDLTPA 342
Query: 63 VVYLVLLELDLAGRLCHHPEGK 84
+ +L+ +L GR+ P G
Sbjct: 343 EISAMLIIFELDGRVAALPGGM 364
>gi|299138372|ref|ZP_07031551.1| DNA protecting protein DprA [Acidobacterium sp. MP5ACTX8]
gi|298599618|gb|EFI55777.1| DNA protecting protein DprA [Acidobacterium sp. MP5ACTX8]
Length = 403
Score = 36.9 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIH--HTGIEAPVVYLVLLELDLAGRLCHHP 81
P ++ ER+ ++ + + +D++I + + V+ L EL+LAGR+ P
Sbjct: 336 EAAAMPPMSEQERLVMQHLRQDEALQLDELIERLEPKMVSGEVFTALFELELAGRVKQMP 395
Query: 82 E 82
Sbjct: 396 G 396
>gi|320103360|ref|YP_004178951.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644]
gi|319750642|gb|ADV62402.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644]
Length = 453
Score = 36.9 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIK-QSLNNVPIHIDDIIHHTGIEAPVVYL 66
Q SS S +++ P ER RI +++ +HID II +G++
Sbjct: 371 QPDPSSNSHSHNRGASTEPVPPGLILSERERIVWETIGTATLHIDAIIAQSGLDPGSAMA 430
Query: 67 VLLELDLAGRLCHHPEGKVS 86
L L+L + P +
Sbjct: 431 TLATLELRRLIGRQPGQMFA 450
>gi|332996762|gb|EGK16387.1| DNA protecting protein DprA [Shigella flexneri K-272]
gi|333014513|gb|EGK33861.1| DNA protecting protein DprA [Shigella flexneri K-227]
Length = 374
Score = 36.9 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G AP V LL
Sbjct: 290 LPDAPENSFYSPDQQDVALPFPE------LLANVGDEVTPVDVVAERAGQPAPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|257091702|ref|YP_003165343.1| DNA protecting protein DprA [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044226|gb|ACV33414.1| DNA protecting protein DprA [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 363
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 42 SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
++ P +D++ +G+ A V ++LL L+L G++ P G
Sbjct: 314 AMGFDPCSLDELTQRSGLTADAVSVILLHLELDGQVACLPGG 355
>gi|300854485|ref|YP_003779469.1| putative Smf protein [Clostridium ljungdahlii DSM 13528]
gi|300434600|gb|ADK14367.1| predicted Smf protein [Clostridium ljungdahlii DSM 13528]
Length = 366
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
C+ +I + ++P+HID+I T ++ +Y +L EL L G +
Sbjct: 303 SCKEEKICNVIGHIPMHIDEISRITNVDIKRLYELLFELQLKGEIMCLAGN 353
>gi|124265474|ref|YP_001019478.1| putative SMF protein [Methylibium petroleiphilum PM1]
gi|124258249|gb|ABM93243.1| putative SMF protein [Methylibium petroleiphilum PM1]
Length = 365
Score = 36.5 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + + +L + P+ +D + G + LL L+L+G +
Sbjct: 297 PDRPSPTTSSPSVEDP--VLAALGHDPVTLDALSARIGWPPAELSARLLALELSGDVVRL 354
Query: 81 PEGK 84
P
Sbjct: 355 PGQL 358
>gi|188535242|ref|YP_001909039.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Erwinia tasmaniensis Et1/99]
gi|188030284|emb|CAO98173.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Erwinia tasmaniensis Et1/99]
Length = 374
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
F+ ++ + + +P+ + ++ + +D + G P + L
Sbjct: 291 PVFAPVTNNSAGSSNPPLPFPD--------VLANVGDEVTPVDVVAERAGQPVPAIVAKL 342
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAG + P G V L
Sbjct: 343 LELELAGWIAAVPGGYVRL 361
>gi|82701529|ref|YP_411095.1| DNA processing protein DprA, putative [Nitrosospira multiformis
ATCC 25196]
gi|82409594|gb|ABB73703.1| DNA protecting protein DprA [Nitrosospira multiformis ATCC 25196]
Length = 372
Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + PE + R + + L++ I +D + +G+ V +LL L+
Sbjct: 296 LEEFGCPSGIPILVPEGGEAAREEFLLLKHLSHDIIDVDTLCLRSGLTVETVSAMLLTLE 355
Query: 73 LAGRLCHHPEGK 84
L G + P G+
Sbjct: 356 LDGIIASLPGGR 367
>gi|327334524|gb|EGE76235.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL097PA1]
Length = 268
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVELTGVSAMTIYRDLAILESSGVLQRHRGRVVAVA 69
>gi|16329968|ref|NP_440696.1| hypothetical protein slr1197 [Synechocystis sp. PCC 6803]
gi|3914979|sp|P73345|SMF_SYNY3 RecName: Full=Protein smf
gi|1652454|dbj|BAA17376.1| slr1197 [Synechocystis sp. PCC 6803]
Length = 398
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
T +T PE + +I ++ P +D I+ T + V LL+L+
Sbjct: 323 PTLTTGARGKQPLTEPPEDLEPTLKKILAAVQEEPTALDQIVAVTALAIGDVSAGLLQLE 382
Query: 73 LAGRLCHHPEGK 84
+ G + P +
Sbjct: 383 ILGLVSQEPGMR 394
>gi|161831372|ref|YP_001595979.1| DNA protecting protein DprA [Coxiella burnetii RSA 331]
gi|161763239|gb|ABX78881.1| DNA protecting protein DprA [Coxiella burnetii RSA 331]
Length = 296
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + ID +I +G A +V +LL ++L G + P G +
Sbjct: 241 DKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSRPGGVI 293
>gi|323359718|ref|YP_004226114.1| Rossmann fold nucleotide-binding protein [Microbacterium testaceum
StLB037]
gi|323276089|dbj|BAJ76234.1| predicted Rossmann fold nucleotide-binding protein [Microbacterium
testaceum StLB037]
Length = 387
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 25 ITHYPEYTQC-----------ERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELD 72
I H PE + R+ +L++ V DDI +G+ + V L
Sbjct: 310 IGHSPEPDAGATSRGGEGRTDDTTRLFDALSSRVARGADDIARRSGLSSAQVQTQLGLAQ 369
Query: 73 LAGRLCHHPEG 83
LAGR+ +G
Sbjct: 370 LAGRVVRDEDG 380
>gi|322420083|ref|YP_004199306.1| DNA protecting protein DprA [Geobacter sp. M18]
gi|320126470|gb|ADW14030.1| DNA protecting protein DprA [Geobacter sp. M18]
Length = 359
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 13 SQSDTNHTKNINITHYP-EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + P + + L + IDDII + + A V LL L
Sbjct: 283 EELSIEPLATHPLQKPPCFPLTPQEAELYALLCQGVLQIDDIIVQSALTAGEVSATLLRL 342
Query: 72 DLAGRLCHHPEGKVSLT 88
+L G + P + S+
Sbjct: 343 ELKGIVTQLPGKRFSVV 359
>gi|29655281|ref|NP_820973.1| DNA protecting protein DprA [Coxiella burnetii RSA 493]
gi|29542553|gb|AAO91487.1| DNA processing protein [Coxiella burnetii RSA 493]
Length = 308
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + ID +I +G A +V +LL ++L G + P G +
Sbjct: 253 DKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSRPGGVI 305
>gi|226362833|ref|YP_002780611.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
gi|226241318|dbj|BAH51666.1| putative IclR family transcriptional regulator [Rhodococcus
opacus B4]
Length = 264
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 18 NHTKNINITHYPEYTQCER--VRIKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + E T R + + + ++++ TGI V ++ E++
Sbjct: 2 SPVERNTSEVGDEPTSVVRRMSDLLAAFGPTDTTLGVNELTRRTGIPKATVSRLVKEMEG 61
Query: 74 AGRLCHHPEGKVSLTMHL 91
G L KV L + L
Sbjct: 62 VGFLER-SGVKVGLGLRL 78
>gi|212213457|ref|YP_002304393.1| DNA processing protein [Coxiella burnetii CbuG_Q212]
gi|212011867|gb|ACJ19248.1| DNA processing protein [Coxiella burnetii CbuG_Q212]
Length = 308
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + ID +I +G A +V +LL ++L G + P G +
Sbjct: 253 DKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSTPGGVI 305
>gi|118473710|ref|YP_886267.1| DNA-binding HTH domain-containing protein [Mycobacterium smegmatis
str. MC2 155]
gi|118174997|gb|ABK75893.1| DNA-binding HTH domain containing protein, putative [Mycobacterium
smegmatis str. MC2 155]
Length = 888
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 40 KQSLNNVPIHIDDIIHHTGIEAPVV------YLVLLELDLAGRLCHHPEG 83
+L +P+ DD++ TG+ V + + LA RL H G
Sbjct: 134 VDAL-PIPLAADDVVELTGLPVAAVVELARLRGITIHPTLADRLTRHAGG 182
>gi|78222110|ref|YP_383857.1| SMF protein [Geobacter metallireducens GS-15]
gi|78193365|gb|ABB31132.1| DNA protecting protein DprA [Geobacter metallireducens GS-15]
Length = 358
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ L P+HID+II + + + +LL L+L G + P
Sbjct: 309 VFALLAPEPLHIDEIIAKSALTVGELSAMLLRLELKGAVTQLPG 352
>gi|169830783|ref|YP_001716765.1| DNA protecting protein DprA [Candidatus Desulforudis audaxviator
MP104C]
gi|169637627|gb|ACA59133.1| DNA protecting protein DprA [Candidatus Desulforudis audaxviator
MP104C]
Length = 394
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ T++ + + E+ R+ + L + +I TG+ AP VL L++
Sbjct: 314 TALFPETESGEAEAVAQLSGEEK-RVLEILQGQSLSDQALIRLTGLAAPQTAAVLAYLEI 372
Query: 74 AGRLCHHPEGK 84
G + P G
Sbjct: 373 KGFVRRAPGGL 383
>gi|254880958|ref|ZP_05253668.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319639966|ref|ZP_07994693.1| DNA processing Smf-like protein [Bacteroides sp. 3_1_40A]
gi|254833751|gb|EET14060.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317388244|gb|EFV69096.1| DNA processing Smf-like protein [Bacteroides sp. 3_1_40A]
Length = 371
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
K + +P+ ++ E RI + L +P + I+ ++ T I + +L EL++ G +
Sbjct: 302 KTVQRELFPDLSEEE-ERIVKRLGKMPEGLQINTLVIDTNIPVNRMSALLFELEMKGVIR 360
Query: 79 HHPEGKVSLTM 89
G L M
Sbjct: 361 ALAGGVYRLIM 371
>gi|168752266|ref|ZP_02777288.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4113]
gi|168758513|ref|ZP_02783520.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4401]
gi|168769147|ref|ZP_02794154.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4486]
gi|168777857|ref|ZP_02802864.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4196]
gi|168783852|ref|ZP_02808859.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4076]
gi|195939833|ref|ZP_03085215.1| hypothetical protein EscherichcoliO157_26116 [Escherichia coli
O157:H7 str. EC4024]
gi|208808566|ref|ZP_03250903.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4206]
gi|208812997|ref|ZP_03254326.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4045]
gi|208818340|ref|ZP_03258660.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4042]
gi|209395952|ref|YP_002272742.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4115]
gi|254795222|ref|YP_003080059.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. TW14359]
gi|187766998|gb|EDU30842.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4196]
gi|188013853|gb|EDU51975.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4113]
gi|188998884|gb|EDU67870.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4076]
gi|189354674|gb|EDU73093.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4401]
gi|189361780|gb|EDU80199.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4486]
gi|208728367|gb|EDZ77968.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4206]
gi|208734274|gb|EDZ82961.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4045]
gi|208738463|gb|EDZ86145.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4042]
gi|209157352|gb|ACI34785.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4115]
gi|209757372|gb|ACI76998.1| hypothetical protein ECs4151 [Escherichia coli]
gi|209757376|gb|ACI77000.1| hypothetical protein ECs4151 [Escherichia coli]
gi|254594622|gb|ACT73983.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
gi|326344521|gb|EGD68270.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Escherichia coli O157:H7 str. 1125]
Length = 374
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFPE------LLANVGDEVTPVDVVAERAGRPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|164685831|ref|ZP_01945729.2| DNA protecting protein DprA [Coxiella burnetii 'MSU Goat Q177']
gi|165918185|ref|ZP_02218271.1| DNA protecting protein DprA [Coxiella burnetii RSA 334]
gi|164601347|gb|EAX33608.2| DNA protecting protein DprA [Coxiella burnetii 'MSU Goat Q177']
gi|165918045|gb|EDR36649.1| DNA protecting protein DprA [Coxiella burnetii RSA 334]
Length = 296
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + ID +I +G A +V +LL ++L G + P G +
Sbjct: 241 DKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSTPGGVI 293
>gi|212219505|ref|YP_002306292.1| DNA processing protein [Coxiella burnetii CbuK_Q154]
gi|212013767|gb|ACJ21147.1| DNA processing protein [Coxiella burnetii CbuK_Q154]
Length = 308
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + ID +I +G A +V +LL ++L G + P G +
Sbjct: 253 DKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSTPGGVI 305
>gi|169831256|ref|YP_001717238.1| selenocysteine-specific translation elongation factor [Candidatus
Desulforudis audaxviator MP104C]
gi|169638100|gb|ACA59606.1| selenocysteine-specific translation elongation factor [Candidatus
Desulforudis audaxviator MP104C]
Length = 635
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
P++ +++ TG+E V V EL+ G L P G
Sbjct: 391 GPAPLNENEVAQGTGLEPDTVAAVCRELEAGGALRRLPGG 430
>gi|294777365|ref|ZP_06742816.1| DNA protecting protein DprA [Bacteroides vulgatus PC510]
gi|294448433|gb|EFG16982.1| DNA protecting protein DprA [Bacteroides vulgatus PC510]
Length = 371
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
K + +P+ ++ E RI + L +P + I+ ++ T I + +L EL++ G +
Sbjct: 302 KTVQRELFPDLSEEE-ERIVKRLGKMPEGLQINTLVIDTNIPVNRMSALLFELEMKGVIR 360
Query: 79 HHPEGKVSLTM 89
G L M
Sbjct: 361 ALAGGVYRLIM 371
>gi|209364274|ref|YP_001425403.2| DNA processing protein [Coxiella burnetii Dugway 5J108-111]
gi|207082207|gb|ABS77073.2| DNA processing protein [Coxiella burnetii Dugway 5J108-111]
Length = 308
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + ID +I +G A +V +LL ++L G + P G +
Sbjct: 253 DKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSTPGGVI 305
>gi|94499924|ref|ZP_01306460.1| Smf protein [Oceanobacter sp. RED65]
gi|94428125|gb|EAT13099.1| Smf protein [Oceanobacter sp. RED65]
Length = 391
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
D++++K PE Q E ++ + L+ + ++ +I HTG+ + +LL+++L
Sbjct: 314 DSHNSKPKVSREIPEGMQPEHYQVYRFLDQGGVGMEQLIQHTGLSVSKLNELLLDMEL 371
>gi|212692602|ref|ZP_03300730.1| hypothetical protein BACDOR_02099 [Bacteroides dorei DSM 17855]
gi|237709086|ref|ZP_04539567.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752610|ref|ZP_06088179.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212664887|gb|EEB25459.1| hypothetical protein BACDOR_02099 [Bacteroides dorei DSM 17855]
gi|229456782|gb|EEO62503.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263235796|gb|EEZ21291.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 371
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
K + +P+ ++ E RI + L +P + I+ ++ T I + +L EL++ G +
Sbjct: 302 KTVQRELFPDLSEEE-ERIVKRLGKIPEGLQINTLVIDTNIPVNRMSALLFELEMKGVIR 360
Query: 79 HHPEGKVSLTM 89
G L M
Sbjct: 361 ALAGGVYRLIM 371
>gi|145220350|ref|YP_001131059.1| DNA protecting protein DprA [Prosthecochloris vibrioformis DSM 265]
gi|145206514|gb|ABP37557.1| DNA protecting protein DprA [Chlorobium phaeovibrioides DSM 265]
Length = 291
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 27/67 (40%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T E + +++ PIHID++ +GI+ + L+L +L++
Sbjct: 217 TRPGATAETRRPAAPFSAEESALLKAMGEEPIHIDELAQKSGIDYAGLLLLLFDLEMKSA 276
Query: 77 LCHHPEG 83
+ P
Sbjct: 277 IEQQPGQ 283
>gi|253997895|ref|YP_003049958.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4]
gi|253984574|gb|ACT49431.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4]
Length = 371
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + ++ + PI ID + +G+ + + +LL L+L ++ P G+
Sbjct: 312 DPEETPHTQLLACMGYDPISIDALQQSSGLTSDSLSAMLLVLELENKVVALPGGR 366
>gi|222625026|gb|EEE59158.1| hypothetical protein OsJ_11077 [Oryza sativa Japonica Group]
Length = 796
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--------IHIDDII 54
Q QN Q+ + K+ L P + +DD+
Sbjct: 706 QAQANQNMPR-QAAAPREHLPPPPPLTTLPTSDSGSAKERLPPTPKKQPEPPVVTLDDLF 764
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T + YL L E ++A +L +GK
Sbjct: 765 RKTHSSPRIYYLPLSEEEVAAKLASQGKGK 794
>gi|313199960|ref|YP_004038618.1| DNA protecting protein dpra [Methylovorus sp. MP688]
gi|312439276|gb|ADQ83382.1| DNA protecting protein DprA [Methylovorus sp. MP688]
Length = 371
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + ++ + PI ID + +G+ + + +LL L+L ++ P G+
Sbjct: 312 DPEETPHTQLLTCMGYDPISIDALQQSSGLTSDSLSAMLLVLELENKVAALPGGR 366
>gi|237749119|ref|ZP_04579599.1| DNA processing protein [Oxalobacter formigenes OXCC13]
gi|229380481|gb|EEO30572.1| DNA processing protein [Oxalobacter formigenes OXCC13]
Length = 375
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
E+ I + P+ D + ++A + + LL L+L+G + P G
Sbjct: 319 EQKLILAQMGYDPVDADILSERCDMDAASLSVELLNLELSGNVESLPGG 367
>gi|304321726|ref|YP_003855369.1| DNA processing protein [Parvularcula bermudensis HTCC2503]
gi|303300628|gb|ADM10227.1| DNA processing protein [Parvularcula bermudensis HTCC2503]
Length = 371
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ P+ T+ + R++ L+ P D ++ TG+ + LL+L L G + G
Sbjct: 300 SPYEAPQITEDLKERVRNLLSVTPTSRDVLLRETGLAPGTLADCLLDLLLDGHIEEVGGG 359
Query: 84 KVSLTM 89
+L++
Sbjct: 360 AYALSI 365
>gi|33864461|ref|NP_896021.1| ArsR family regulatory protein [Prochlorococcus marinus str. MIT
9313]
gi|124024609|ref|YP_001018916.1| regulatory proteins, ArsR family protein [Prochlorococcus marinus
str. MIT 9303]
gi|33641241|emb|CAE22371.1| Bacterial regulatory proteins, ArsR family [Prochlorococcus
marinus str. MIT 9313]
gi|123964895|gb|ABM79651.1| Bacterial regulatory proteins, ArsR family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 101
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 31/59 (52%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
++ +++ R+ + ++L + P+++ ++ T + +V L L +AG + PEG
Sbjct: 5 AEYFKVFSEPNRLAVLEALRSGPLNVTAVVEKTDLSQALVSKHLKLLTIAGVVHRRPEG 63
>gi|218192947|gb|EEC75374.1| hypothetical protein OsI_11837 [Oryza sativa Indica Group]
Length = 797
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--------IHIDDII 54
Q QN Q+ + K+ L P + +DD+
Sbjct: 707 QAQANQNMPR-QAAAPREHLPPPPPLTTLPTSDSGSAKERLPPTPKKQPEPPVVTLDDLF 765
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T + YL L E ++A +L +GK
Sbjct: 766 RKTHSSPRIYYLPLSEEEVAAKLASQGKGK 795
>gi|83642945|ref|YP_431380.1| DNA uptake Rossmann fold nucleotide-binding protein [Hahella
chejuensis KCTC 2396]
gi|83630988|gb|ABC26955.1| predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Hahella chejuensis KCTC 2396]
Length = 389
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 26/73 (35%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + ++ + + + + D ++ TG+ + VL+EL+
Sbjct: 313 AAEEFPGQQSQPEPASLRPLSEQAEAVLKGMGYDCTPPDALVERTGLSIAEIRSVLIELE 372
Query: 73 LAGRLCHHPEGKV 85
L G + G +
Sbjct: 373 LEGWVQEVAGGFI 385
>gi|221069821|ref|ZP_03545926.1| DNA protecting protein DprA [Comamonas testosteroni KF-1]
gi|220714844|gb|EED70212.1| DNA protecting protein DprA [Comamonas testosteroni KF-1]
Length = 397
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ + Q+ +I+ +P + Q+L + P+ ++ + TG +A
Sbjct: 317 LQGLEPAPIQAEQAQEATGNKTSISEHP---------LLQALGHDPMTLESLSDRTGWDA 367
Query: 62 PVVYLVLLELDLAGRLCHHPEGK 84
+ L+EL+ G + P G
Sbjct: 368 AHLQAQLMELEFDGLVARLPGGL 390
>gi|108804233|ref|YP_644170.1| DNA processing protein DprA [Rubrobacter xylanophilus DSM 9941]
gi|108765476|gb|ABG04358.1| DNA processing protein DprA, putative [Rubrobacter xylanophilus DSM
9941]
Length = 368
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +L P D++ G+ V L L+L G + G
Sbjct: 314 AAVLGALGFEPAPADEVAQRCGLAMGQVLSALSMLELKGYVVRDAGG 360
>gi|226324651|ref|ZP_03800169.1| hypothetical protein COPCOM_02436 [Coprococcus comes ATCC 27758]
gi|225207099|gb|EEG89453.1| hypothetical protein COPCOM_02436 [Coprococcus comes ATCC 27758]
Length = 365
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + + L P +DD+ TG+ V + + L L G
Sbjct: 309 ETKENLVYSKLGLYPRGLDDLQRETGLTPQEVMGICVSLQLKG 351
>gi|331007628|ref|ZP_08330770.1| Rossmann fold nucleotide-binding protein [gamma proteobacterium
IMCC1989]
gi|330418568|gb|EGG93092.1| Rossmann fold nucleotide-binding protein [gamma proteobacterium
IMCC1989]
Length = 391
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
QS T T+ PE ++V + L P ID +I T + + LL L++
Sbjct: 323 QSTTAQTEKKR----PELEPKDKVLLAH-LGFAPTSIDQLIETTQLSHADISDALLTLEI 377
Query: 74 AGRLCHHPEG 83
G + H G
Sbjct: 378 NGWIKHSAWG 387
>gi|187476713|ref|YP_784736.1| Smf protein [Bordetella avium 197N]
gi|115421299|emb|CAJ47804.1| Smf protein [Bordetella avium 197N]
Length = 373
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
I S + P TQ + +L + P H D + +G++A +
Sbjct: 293 ITDELSSPRQPAPSPPAQPRAEPPPGTQA----LLTALGHDPQHADSLAAASGLDAATLG 348
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L EL++AG + +G+ L
Sbjct: 349 AQLTELEVAGWIARLDDGRYQL 370
>gi|108708492|gb|ABF96287.1| SAP domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|108708493|gb|ABF96288.1| SAP domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 715
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--------IHIDDII 54
Q QN Q+ + K+ L P + +DD+
Sbjct: 625 QAQANQNMPR-QAAAPREHLPPPPPLTTLPTSDSGSAKERLPPTPKKQPEPPVVTLDDLF 683
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T + YL L E ++A +L +GK
Sbjct: 684 RKTHSSPRIYYLPLSEEEVAAKLASQGKGK 713
>gi|88606798|ref|YP_505506.1| putative DNA processing protein DprA [Anaplasma phagocytophilum HZ]
gi|88597861|gb|ABD43331.1| putative DNA processing protein DprA [Anaplasma phagocytophilum HZ]
Length = 344
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
DT + N T P + I ++L+ P +IDD++ ++ V+ LLEL+LAG
Sbjct: 273 DTQKRTSKNTTTTPV-----QDLILKNLSISPTNIDDLVICCNLDVSVLLAALLELELAG 327
Query: 76 RLCHHPEGKVSL 87
R+ P + +L
Sbjct: 328 RVERLPGNRFAL 339
>gi|115379506|ref|ZP_01466600.1| topoisomerase [Stigmatella aurantiaca DW4/3-1]
gi|310822350|ref|YP_003954708.1| smf family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363484|gb|EAU62625.1| topoisomerase [Stigmatella aurantiaca DW4/3-1]
gi|309395422|gb|ADO72881.1| SMF family protein [Stigmatella aurantiaca DW4/3-1]
Length = 373
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 41 QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ L+ VP ++++ + + L+EL+L+G L HP
Sbjct: 326 EVLDRVPRTFEEVLAAVRLSPAALASALVELELSGLLIQHPG 367
>gi|197119085|ref|YP_002139512.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
gi|197088445|gb|ACH39716.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
Length = 359
Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V +E+ Q++ K + P+ + + + +L IDDII + + A
Sbjct: 278 VEDILEELGLEPQANLPLPKPSSFELNPQEAELYALICQGAL-----QIDDIIVQSALTA 332
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
V LL L++ G + P + ++
Sbjct: 333 SEVSATLLRLEMKGAIVQLPGKRFAVA 359
>gi|254420463|ref|ZP_05034187.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
gi|196186640|gb|EDX81616.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
Length = 356
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 20 TKNINITHYPEYTQCERV---RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T + +Y + + R+ L+ P D+I V LLEL LAGR
Sbjct: 286 TLRAPPSEPMDYGEVDDAFLDRVAALLSPTPTPRDEIARALNAPMGQVAAALLELSLAGR 345
Query: 77 LCHHPEGKVSL 87
P G S+
Sbjct: 346 AELLPGGLASI 356
>gi|167630278|ref|YP_001680777.1| DNA processing protein dpra, putative [Heliobacterium modesticaldum
Ice1]
gi|167593018|gb|ABZ84766.1| DNA processing protein dpra, putative [Heliobacterium modesticaldum
Ice1]
Length = 378
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ SD ++N + ++ ER RI + L+ P D++ G+ V L
Sbjct: 305 PAHSSDEQLSENR---LSSDQSEAER-RILEILDWEPRSADELAARLGLSGSEVAAALTL 360
Query: 71 LDLAGRLCHHPEG 83
L+L GR+ G
Sbjct: 361 LELKGRVQMERGG 373
>gi|194333226|ref|YP_002015086.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271]
gi|194311044|gb|ACF45439.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271]
Length = 382
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
E +I +L + P+HID + T I A + + L EL++ + P
Sbjct: 327 SKEEQQILHTLGDKPLHIDLLAEKTAIPASSLLIRLFELEIKNLVEQLPGQ 377
>gi|170782785|ref|YP_001711119.1| transcription-repair coupling factor [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157355|emb|CAQ02542.1| transcription-repair coupling factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 1210
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL----NNVPIHIDDIIHHTGIEAP 62
E+ S + + ++ P T + R+ + L P+ +D+++ + +
Sbjct: 1060 EEYVDSERLRLEAYQKLSTAASPTATDDQIDRVIEELSDRYGEPPVEVDNLVRVSRLRRV 1119
Query: 63 VVYLVLLELDLAGRLCH 79
L E+ GR
Sbjct: 1120 AQRAGLSEVVAMGRNLR 1136
>gi|115453295|ref|NP_001050248.1| Os03g0383800 [Oryza sativa Japonica Group]
gi|113548719|dbj|BAF12162.1| Os03g0383800 [Oryza sativa Japonica Group]
Length = 288
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--------IHIDDII 54
Q QN Q+ + K+ L P + +DD+
Sbjct: 198 QAQANQNMPR-QAAAPREHLPPPPPLTTLPTSDSGSAKERLPPTPKKQPEPPVVTLDDLF 256
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T + YL L E ++A +L +GK
Sbjct: 257 RKTHSSPRIYYLPLSEEEVAAKLASQGKGK 286
>gi|22298974|ref|NP_682221.1| SMF protein [Thermosynechococcus elongatus BP-1]
gi|22295155|dbj|BAC08983.1| SMF protein [Thermosynechococcus elongatus BP-1]
Length = 355
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 19 HTKNINITHYPEYTQC---ERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLE 70
HT ++ T + + + +I +++ + + DDI+ ++ VV L+
Sbjct: 276 HTPPLDPTPFSAPSPTLSLPQQQILEAIQQLSQGSQSVAFDDIVQRVCLDTGVVMAELIH 335
Query: 71 LDLAGRLCHHPEGK 84
L+L G + P +
Sbjct: 336 LELMGYVEQQPGNR 349
>gi|259418008|ref|ZP_05741927.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
gi|259346914|gb|EEW58728.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
Length = 382
Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 21 KNINITHYPEYTQCE-------RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+IN P + +I L P +I A + VL +L+L
Sbjct: 307 PHINDLPSPPPERRSLRQTAALHQQILDRLAVAPTPEGQLIDDLDTPARKIRTVLTDLEL 366
Query: 74 AGRLCHHPEGKV 85
+G + P G +
Sbjct: 367 SGEIGRGPGGVI 378
>gi|81299514|ref|YP_399722.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC
7942]
gi|81168395|gb|ABB56735.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC
7942]
Length = 402
Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ S+ + + E+ ++ L++ PI DDI+ +G++
Sbjct: 322 LDPQSPPLMPSA------VPSQEVEEAIADLSPEQAQVYALLSDQPISKDDIVEQSGLDF 375
Query: 62 PVVYLVLLELDLAGRLC 78
V + L L++ G
Sbjct: 376 HQVQIHLTHLEILGLAE 392
>gi|56750836|ref|YP_171537.1| DNA processing protein [Synechococcus elongatus PCC 6301]
gi|56685795|dbj|BAD79017.1| DNA processing protein [Synechococcus elongatus PCC 6301]
Length = 406
Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ S+ + + E+ ++ L++ PI DDI+ +G++
Sbjct: 326 LDPQSPPLMPSA------VPSQEVEEAIADLSPEQAQVYALLSDQPISKDDIVEQSGLDF 379
Query: 62 PVVYLVLLELDLAGRLC 78
V + L L++ G
Sbjct: 380 HQVQIHLTHLEILGLAE 396
>gi|187930744|ref|YP_001901231.1| DNA protecting protein DprA [Ralstonia pickettii 12J]
gi|187727634|gb|ACD28799.1| DNA protecting protein DprA [Ralstonia pickettii 12J]
Length = 402
Score = 34.6 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
P + E + +L P+ +D + TG A + LL L+L GR+ P G+
Sbjct: 343 PAPSASE-AALLDALGFDPVDLDTLCERTGQGAAALSAQLLALELDGRVERRPGGR 397
>gi|148658666|ref|YP_001278871.1| DNA protecting protein DprA [Roseiflexus sp. RS-1]
gi|148570776|gb|ABQ92921.1| DNA protecting protein DprA [Roseiflexus sp. RS-1]
Length = 360
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 20/63 (31%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
D + + + + P+HIDD+ T + V L L+
Sbjct: 284 EALDMSTAASQQEVRAALPDDPVEAAVLALVGYEPLHIDDLQRRTSMPVHEVSATLTVLE 343
Query: 73 LAG 75
L G
Sbjct: 344 LKG 346
>gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
tepidum TLS]
gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
tepidum TLS]
Length = 399
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 1 MVHPQIEQNFFSSQ---SDTNHTKNINITHYPEYTQC-----ERVRIKQSLNNVPIHIDD 52
++ + FS++ ++ N ++ + +PE ++ E I ++L + +HID
Sbjct: 302 LIQQNHAKPVFSAEDILAELNPAQHPALKTHPEASEPFDLNIEESCIVEALQSGAMHIDL 361
Query: 53 IIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
I TG++ + + L EL+L + P
Sbjct: 362 IAEKTGLKIDALLVHLFELELKRIIEQEPGQ 392
>gi|310816234|ref|YP_003964198.1| DNA processing protein DprA, putative [Ketogulonicigenium vulgare
Y25]
gi|308754969|gb|ADO42898.1| DNA processing protein DprA, putative [Ketogulonicigenium vulgare
Y25]
Length = 358
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELD 72
D + P RI ++ P+ + ++ T GI+A + L L++L+
Sbjct: 280 SIDAPPPQAALALSAPLSLADPSARILAQISASPVP-EHVLRDTLGIDARSLSLALIDLE 338
Query: 73 LAGRLCHHPEGKVSL 87
L G + G V+L
Sbjct: 339 LDGAIHRPSSGLVAL 353
>gi|83638356|gb|ABC33890.1| putative regulatory protein [Rhodococcus sp. T104]
Length = 261
Score = 34.2 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 18 NHTKNINITHYPEYTQCER--VRIKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + E T R + + + ++++ TGI V ++ E++
Sbjct: 2 SPVERNTSPPGGEPTSVVRRMSDLFAAFGPTDTALGVNELTRRTGIPKATVSRLVKEMEG 61
Query: 74 AGRLCHHPEGKVSLTMHL 91
G L KV L + L
Sbjct: 62 VGFLER-RGAKVGLGLRL 78
>gi|302548540|ref|ZP_07300882.1| IclR family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302466158|gb|EFL29251.1| IclR family transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length = 258
Score = 34.2 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 30 EYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + R+ L + + D+ TG+ + LEL AG L P+G
Sbjct: 7 QPGRSVSARLFDVLFAFRPGRSRLTLADLTRETGLPHATARRLTLELVEAGALDRAPDGS 66
Query: 85 VSLTMHL 91
S+ + L
Sbjct: 67 FSVGLRL 73
>gi|156740191|ref|YP_001430320.1| DNA protecting protein DprA [Roseiflexus castenholzii DSM 13941]
gi|156231519|gb|ABU56302.1| DNA protecting protein DprA [Roseiflexus castenholzii DSM 13941]
Length = 360
Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + P+HIDD+ T + V L L+L G
Sbjct: 302 PDDPVEAAVLALVGYEPLHIDDLQRRTSMPVYEVSAALAVLELKG 346
>gi|268317536|ref|YP_003291255.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
gi|262335070|gb|ACY48867.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
Length = 385
Score = 34.2 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ +L PIHID + TG++ + LL+L+ G L GK
Sbjct: 334 QLYDALEPEPIHIDVLCERTGLDPSTALVYLLQLEFKG-LVRQLAGK 379
>gi|312130376|ref|YP_003997716.1| DNA protecting protein dpra [Leadbetterella byssophila DSM 17132]
gi|311906922|gb|ADQ17363.1| DNA protecting protein DprA [Leadbetterella byssophila DSM 17132]
Length = 359
Score = 34.2 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ER I+ N I ID++ T I + LLEL+ G + P K SL
Sbjct: 299 PKWENESERSLIEIIANYREIGIDELSWRTEIPLNQLASHLLELEFKGVVKQLPGKKFSL 358
Query: 88 T 88
Sbjct: 359 A 359
>gi|39997645|ref|NP_953596.1| DNA processing protein DprA [Geobacter sulfurreducens PCA]
gi|39984537|gb|AAR35923.1| DNA processing protein DprA [Geobacter sulfurreducens PCA]
gi|298506585|gb|ADI85308.1| DNA uptake/processing protein SMF [Geobacter sulfurreducens KN400]
Length = 356
Score = 34.2 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ P+HID+II + + V +LL L+L G + P
Sbjct: 305 AALMAMFGADPLHIDEIIAKSALTVGEVSAMLLRLELKGVVTQLPG 350
>gi|303240294|ref|ZP_07326813.1| DNA protecting protein DprA [Acetivibrio cellulolyticus CD2]
gi|302592204|gb|EFL61933.1| DNA protecting protein DprA [Acetivibrio cellulolyticus CD2]
Length = 369
Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+I + L P HID I + TG+ V+ V++ L+L G + P L +
Sbjct: 318 KIVECLKLEPTHIDIIANKTGLNIKVINSVIVMLELKGLVEQLPGKVYKLKL 369
>gi|329889387|ref|ZP_08267730.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
gi|328844688|gb|EGF94252.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
Length = 362
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 14 QSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ P+ RI+ L+ PI D++ G+ LLEL
Sbjct: 288 TLREPPADSPFAAGSPDQIDDAVLDRIEALLSPTPIGRDELARAAGLSIAETAAALLELH 347
Query: 73 LAGRLCHHPEGKVS 86
LAGR P G S
Sbjct: 348 LAGRATLLPGGLAS 361
>gi|317486705|ref|ZP_07945522.1| DNA protecting protein DprA [Bilophila wadsworthia 3_1_6]
gi|316922088|gb|EFV43357.1| DNA protecting protein DprA [Bilophila wadsworthia 3_1_6]
Length = 429
Score = 33.9 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERV----RIKQSLNNVPIHIDDIIHHTG 58
P +S ++ P Q +R RI L P IDD+ G
Sbjct: 341 QPDSAPRPYSLDVPQEPFQSAPAA-PPPLRQPDRSTLEGRILTLLAQSPRAIDDVCQSLG 399
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ L++ G + P+ + +LT
Sbjct: 400 CDPGEAGSTLIILEVRGLIRQRPDLRYALT 429
>gi|116747661|ref|YP_844348.1| DNA protecting protein DprA [Syntrophobacter fumaroxidans MPOB]
gi|116696725|gb|ABK15913.1| DNA protecting protein DprA [Syntrophobacter fumaroxidans MPOB]
Length = 386
Score = 33.9 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P I +S + + + ++ + L+ P HID+I T
Sbjct: 297 LRPLIR------RSAAPPGEPDERETPVSGLEPDELQALRELDGNPRHIDEIARSTQWPV 350
Query: 62 PVVYLVLLELDLAGRLCHHPE 82
V VL L+L G P
Sbjct: 351 GKVMAVLSNLELKGVARQLPG 371
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.302 0.137 0.369
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,796,756,939
Number of Sequences: 14124377
Number of extensions: 65750514
Number of successful extensions: 192205
Number of sequences better than 10.0: 606
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 191497
Number of HSP's gapped (non-prelim): 757
length of query: 95
length of database: 4,842,793,630
effective HSP length: 64
effective length of query: 31
effective length of database: 3,938,833,502
effective search space: 122103838562
effective search space used: 122103838562
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.7 bits)
S2: 76 (33.9 bits)