BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780305|ref|YP_003064718.1| hypothetical protein
CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
(95 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|222085614|ref|YP_002544144.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
gi|221723062|gb|ACM26218.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
Length = 383
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 46/88 (52%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P E + F Q + + P +R +I +L P+ IDDII HTG
Sbjct: 294 LRPLAEPDLFRPQLAEAPVEKNDKALSPPPDDTDRDQIVDALGPTPVEIDDIIRHTGASV 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
V+ VLLELD+AGRL HP G VS++M
Sbjct: 354 SSVHSVLLELDMAGRLHRHPGGLVSISM 381
>gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039982|gb|ACT56778.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 95
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE
Sbjct: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ
Sbjct: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
>gi|15965054|ref|NP_385407.1| hypothetical protein SMc01363 [Sinorhizobium meliloti 1021]
gi|15074233|emb|CAC45880.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 383
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + +R R+ ++L P+ IDD+I +TG+ A
Sbjct: 294 LAPLSRDDLFSRLEANEPSAEEPRPMPQPPDDTDRSRVVEALGPTPVAIDDLIRYTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
P +++VL+ELDLAG+LC H VSL
Sbjct: 354 PQIHMVLVELDLAGQLCRHGGNLVSLAT 381
>gi|307317859|ref|ZP_07597297.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
gi|306896621|gb|EFN27369.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
Length = 383
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + +R R+ ++L P+ IDD+I +TG+ A
Sbjct: 294 LAPLSRDDLFSRLEANEPSAEEPRPMPQPPDDTDRSRVVEALGPTPVAIDDLIRYTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
P +++VL+ELDLAG+LC H VSL
Sbjct: 354 PQIHMVLVELDLAGQLCRHGGNLVSLAT 381
>gi|86357273|ref|YP_469165.1| DNA processing chain A protein [Rhizobium etli CFN 42]
gi|86281375|gb|ABC90438.1| probable DNA processing chain A protein [Rhizobium etli CFN 42]
Length = 380
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S P +R+RI +L P+ IDD+I HTG+ A
Sbjct: 294 LAPLAQLELFPSSRAEAPAGESKPITMP-PGDSDRMRIIDALGPTPVEIDDVIRHTGLPA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|222148310|ref|YP_002549267.1| DNA protecting protein DprA [Agrobacterium vitis S4]
gi|221735298|gb|ACM36261.1| DNA protecting protein DprA [Agrobacterium vitis S4]
Length = 383
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 44/87 (50%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + T + +R RI +L P+ +DDII HT +
Sbjct: 294 LSPLSSIDLFSQPQVEEPVYEESETFNQPPGEQDRSRIIDALGITPVEVDDIIRHTQLPP 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYLV+LELD+AGRL HP G VS+
Sbjct: 354 SAVYLVMLELDIAGRLHRHPGGLVSIA 380
>gi|241204123|ref|YP_002975219.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858013|gb|ACS55680.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 380
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + F S + P +R RI +L P+ IDD+I HTG+ A
Sbjct: 294 LAPLAQFDLFPSSMAEEPAPDGKPMSVP-PGDSDRNRIIDALGPTPVEIDDVIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|116251502|ref|YP_767340.1| smf protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115256150|emb|CAK07231.1| putative smf protein [Rhizobium leguminosarum bv. viciae 3841]
Length = 380
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + F S + +R RI +L P+ IDD+I HTG+ A
Sbjct: 294 LAPLAQFDLFPSSMAEKPAPDGK-AMSVPPGDSDRNRIIDALGPTPVEIDDVIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|209548899|ref|YP_002280816.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534655|gb|ACI54590.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 380
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S ++ +R RI +L P+ IDDII HTG+ A
Sbjct: 294 LAPLAQFELFPSSMAEEPPRDG-GAMTMPPGDTDRNRIIDALGPTPVEIDDIIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD+AGRL H G +SL+
Sbjct: 353 SAVYLILLELDIAGRLHRHQGGLISLS 379
>gi|190891322|ref|YP_001977864.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
gi|190696601|gb|ACE90686.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
Length = 380
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S T+ +R RI +L P+ IDDII HTG+ A
Sbjct: 294 LAPLAQFELFPSSMAEEPTRGG-GAMTMPPGDTDRNRIIDALGPTPVEIDDIIRHTGLSA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|218674768|ref|ZP_03524437.1| DNA processing chain A protein [Rhizobium etli GR56]
Length = 380
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S P +R+ I +L P+ IDD+I HTG+ A
Sbjct: 294 LAPLAQLELFPSSGAEEPAGESRPITMP-PGDSDRMHIIDALGPTPVEIDDVIRHTGLPA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
VYL+LLELD++GRL H G VSL+
Sbjct: 353 SAVYLILLELDISGRLHRHQGGLVSLS 379
>gi|150396156|ref|YP_001326623.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
gi|150027671|gb|ABR59788.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
Length = 383
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS +R R+ ++L P+ IDD+I HTG+ A
Sbjct: 294 LAPLSRDDLFSRLHVNEPALEELRPVPRAPDDSDRSRVVEALGPTPVEIDDLIRHTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
P ++LVL+ELDLAG+LC H VS+
Sbjct: 354 PQIHLVLVELDLAGQLCRHGGNLVSIAT 381
>gi|218663674|ref|ZP_03519604.1| DNA processing chain A protein [Rhizobium etli IE4771]
Length = 147
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S P +R+RI +L P+ IDD+I HTG+ A
Sbjct: 61 LAPLAQFELFPSSRAEEPAGESRPITMP-PGDSDRMRIIDALGPTPLEIDDVIRHTGLSA 119
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
VYL+LLELD++GRL H G VSL++
Sbjct: 120 SAVYLILLELDISGRLHRHQGGLVSLSV 147
>gi|15888630|ref|NP_354311.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
gi|15156358|gb|AAK87096.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
Length = 380
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P +E + ++ ER I +L P+ IDDII HTG A
Sbjct: 294 LRPLMEPQLPYDCKIEEPRSDEEMS---PPGDDERSVIASALGPSPVEIDDIIRHTGFSA 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V+LVLLELD+AGRL H G+VSL
Sbjct: 351 AAVHLVLLELDIAGRLNRHAGGRVSL 376
>gi|307301126|ref|ZP_07580895.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
gi|306904081|gb|EFN34667.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
Length = 383
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + FS + +R R+ ++L P+ IDD+I +TG+ A
Sbjct: 294 LAPLSRDDLFSRLEANEPSAEEPRPMPMPPDDTDRSRVVEALGPTPVAIDDLIRYTGLAA 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
P +++VL+ELDLAG+LC H VSL
Sbjct: 354 PQIHMVLVELDLAGQLCRHGGNLVSLAT 381
>gi|163759336|ref|ZP_02166422.1| putative smf protein [Hoeflea phototrophica DFL-43]
gi|162283740|gb|EDQ34025.1| putative smf protein [Hoeflea phototrophica DFL-43]
Length = 383
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + E +R R+ ++L P +DDII HTG+ A
Sbjct: 294 LAPSSRLFSDDEPVMEEPGDD-ETDRFAEPGDDDRARVIEALGPSPSEVDDIIRHTGVAA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
VYLVL+ELDLAGRL HP G VSL P
Sbjct: 353 ATVYLVLIELDLAGRLHRHPGGMVSLAFDDP 383
>gi|325292667|ref|YP_004278531.1| DNA processing chain A [Agrobacterium sp. H13-3]
gi|325060520|gb|ADY64211.1| DNA processing chain A [Agrobacterium sp. H13-3]
Length = 379
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P +E + + ++ ER + +L + P+ DDII HTG +
Sbjct: 294 LRPLMEPQLPYDRKVEEPRSDEEMS---PPGDDERSIVAAALGHSPVETDDIIRHTGFSS 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V++VLLELD+AGRL H G+VSL
Sbjct: 351 ATVHMVLLELDIAGRLNRHAGGRVSL 376
>gi|13470875|ref|NP_102444.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
gi|14021618|dbj|BAB48230.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
Length = 377
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + + + P + +R ++ ++L P+ +D+II HTG+ V++VLLEL
Sbjct: 297 RAPAVPPFEDPPDFSATPPPGESDRAKVIEALGPTPVPVDEIIRHTGLHPAQVFMVLLEL 356
Query: 72 DLAGRLCHHPEGKVSL 87
DLAGRL H G VSL
Sbjct: 357 DLAGRLERHAGGNVSL 372
>gi|260459178|ref|ZP_05807433.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
gi|259034732|gb|EEW35988.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + + P + +R ++ Q+L P+ +D+II HTG+
Sbjct: 297 IAPLTGMRAPEMPPFEDPP---DFSATPPPGESDRAKVIQALGPTPVPVDEIIRHTGLHP 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
V++VLLELDLAGRL H G VSL
Sbjct: 354 AQVFMVLLELDLAGRLERHAGGNVSLLFEN 383
>gi|146341416|ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
gi|146194222|emb|CAL78244.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
Length = 371
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P +E+ S + P+ +R +I L P+ IDD+I +G+ V
Sbjct: 292 PIMERPLPLSL-----REPDEELFAPDPESHDRTQILGLLGPTPVSIDDLIRMSGLSPAV 346
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +VLLEL+LAGRL H G VSL
Sbjct: 347 LRMVLLELELAGRLERHGGGMVSL 370
>gi|46200754|ref|ZP_00056433.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum magnetotacticum
MS-1]
Length = 383
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + E + E R ++ ++L P+ +D+II + +V
Sbjct: 298 DLLRRPLAEGKRADFRASGPVEPDESELDRARSQVAEALGPAPVMVDEIIRQCQLSPSMV 357
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
VLLE++LAGRL HP +VSL +
Sbjct: 358 SWVLLEIELAGRLERHPGNRVSLLV 382
>gi|83309780|ref|YP_420044.1| Rossmann fold nucleotide-binding protein [Magnetospirillum
magneticum AMB-1]
gi|82944621|dbj|BAE49485.1| Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magneticum AMB-1]
Length = 383
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + E E R R+ ++L P+ +D+II + +V
Sbjct: 298 DLLRRPLAEGKRADFRAPQPVEPDTSEMDQARARVAEALGPAPVMVDEIIRQCQLSPSMV 357
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
VLLE++LAGRL HP +VSL +
Sbjct: 358 SWVLLEIELAGRLERHPGNRVSLLV 382
>gi|158424472|ref|YP_001525764.1| SMF protein [Azorhizobium caulinodans ORS 571]
gi|158331361|dbj|BAF88846.1| SMF protein [Azorhizobium caulinodans ORS 571]
Length = 374
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P +E+ +T + R RI + L+ VP +DD++ +G A
Sbjct: 288 LKPLLERPLPGGGDETFEAPRPPRAPEGGPDEGVRARILELLSPVPTALDDLVRLSGASA 347
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V +VLLEL+LAGRL G V+L
Sbjct: 348 AEVQVVLLELELAGRLERQRGGLVAL 373
>gi|90417726|ref|ZP_01225638.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
gi|90337398|gb|EAS51049.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
Length = 376
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P ++ + + E + ER RI ++L PI +DDII HTG
Sbjct: 292 LRPMDDRMGWMPPAIEEPPSGQET---DEPAEGERERIVETLGPTPIDVDDIILHTGARP 348
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
V LVLLELDLAGRL HP G VSL +
Sbjct: 349 GAVQLVLLELDLAGRLERHPGGLVSLLL 376
>gi|328543466|ref|YP_004303575.1| DNA protecting protein DprA [polymorphum gilvum SL003B-26A1]
gi|326413210|gb|ADZ70273.1| DNA protecting protein DprA, putative [Polymorphum gilvum
SL003B-26A1]
Length = 380
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ +IE + ++ E T R RI +L P+ ID++I TG+ A
Sbjct: 294 LAGRIEPVLPFEGEISEPDQSAPPEP-IEPTDSLRDRIVSALGPTPVEIDELIRFTGLPA 352
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V++VLLEL+LAGRL H +VSL
Sbjct: 353 RTVHVVLLELELAGRLERHRGQQVSL 378
>gi|227821656|ref|YP_002825626.1| DNA processing chain A [Sinorhizobium fredii NGR234]
gi|227340655|gb|ACP24873.1| DNA processing chain A [Sinorhizobium fredii NGR234]
Length = 386
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT---QCERVRIKQSLNNVPIHIDDIIHHTG 58
+ P + FS + + P + R + ++L P+ IDDII HTG
Sbjct: 294 LAPLSRDDLFSRLNAREPAVEPAPSGPPATATLGEGGRALVVEALGPTPVEIDDIIRHTG 353
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ A V+LVLLELDLAG+LC H VSL
Sbjct: 354 LAASEVHLVLLELDLAGQLCRHGANLVSLA 383
>gi|319783706|ref|YP_004143182.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169594|gb|ADV13132.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 379
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + + P + +R R+ ++L P+ +D+II HT + V++VLLEL
Sbjct: 297 RAPDVPPFEEPPDFLAAPPPGESDRARVIEALGPTPVPVDEIIRHTRLHPAQVFMVLLEL 356
Query: 72 DLAGRLCHHPEGKVSLTM 89
DLAGRL H G VSL +
Sbjct: 357 DLAGRLERHAGGNVSLVL 374
>gi|91977499|ref|YP_570158.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
gi|91683955|gb|ABE40257.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
Length = 422
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P +++ + H E R RI L PI IDD+I +GI
Sbjct: 341 VAPIMDRPVELPGREPEH-----PAPASEPDASHRGRIVNLLGPSPIGIDDLIRLSGIPP 395
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
VV VLLEL+LAGRL H G VSL
Sbjct: 396 AVVRTVLLELELAGRLDRHGGGLVSL 421
>gi|295982522|pdb|3MAJ|A Chain A, Crystal Structure Of Putative Dna Processing Protein Dpra
Fr Rhodopseudomonas Palustris Cga009
Length = 382
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + + E +R RI L P+ IDD+I +GI VV +LL
Sbjct: 304 ILERPIELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILL 363
Query: 70 ELDLAGRLCHHPEGKVSLT 88
EL+LAGRL H VSL+
Sbjct: 364 ELELAGRLERHGGSLVSLS 382
>gi|39936183|ref|NP_948459.1| DNA processing protein DprA [Rhodopseudomonas palustris CGA009]
gi|39650038|emb|CAE28561.1| DNA processing chain A [Rhodopseudomonas palustris CGA009]
Length = 380
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + + E +R RI L P+ IDD+I +GI VV +LL
Sbjct: 302 ILERPIELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILL 361
Query: 70 ELDLAGRLCHHPEGKVSLT 88
EL+LAGRL H VSL+
Sbjct: 362 ELELAGRLERHGGSLVSLS 380
>gi|192291901|ref|YP_001992506.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
gi|192285650|gb|ACF02031.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
Length = 378
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + + E +R RI L P+ IDD+I +GI VV +LL
Sbjct: 300 ILERPIELPGREPEHAPPEGEPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILL 359
Query: 70 ELDLAGRLCHHPEGKVSLT 88
EL+LAGRL H VSL+
Sbjct: 360 ELELAGRLERHGGSLVSLS 378
>gi|163792865|ref|ZP_02186841.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
gi|159181511|gb|EDP66023.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
Length = 379
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ H E R + L P+ +D++I + AP+V LLE +LAG + +
Sbjct: 307 DPEPVAHPLESDDTTRRTVLDVLGPEPVPVDELIRGCQLSAPIVATALLEAELAGLVDRY 366
Query: 81 PEGKVSLTMHLPS 93
P +V+ M P+
Sbjct: 367 PGNQVARRMSTPA 379
>gi|316933647|ref|YP_004108629.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
gi|315601361|gb|ADU43896.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
Length = 378
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+T + + + E +R RI L P+ IDD+I +GI VV VLL
Sbjct: 300 ILERPVETPNREPEHAPPTGEPEPSDRSRILGLLGPSPVGIDDLIRLSGISPAVVRTVLL 359
Query: 70 ELDLAGRLCHHPEGKVSLT 88
EL+LAGRL H VSL+
Sbjct: 360 ELELAGRLERHGGSLVSLS 378
>gi|146329048|ref|YP_001209084.1| DNA processing protein DprA [Dichelobacter nodosus VCS1703A]
gi|146232518|gb|ABQ13496.1| DNA processing protein DprA [Dichelobacter nodosus VCS1703A]
Length = 382
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 2 VHPQIEQNFFSSQSDTNH--TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGI 59
+ P + N Q H +N TH R+ + P +DD++ T +
Sbjct: 291 LLPLAKANVELQQQFQPHHLPQNEPQTHQEYPANSLENRLLNIMGYDPWRVDDLVEKTHL 350
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
A + +LL L+L G + G+ +
Sbjct: 351 TAAEISAMLLMLELDGAVASLSGGRYQRS 379
>gi|307946437|ref|ZP_07661772.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
gi|307770101|gb|EFO29327.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
Length = 378
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ ++E + +Q+ N Y E R + +L P +D++I + A
Sbjct: 292 LAGRLEPDLPFAQTI-NEDPTSTDAPYQEPDDSSRSAVLSALGPTPTDVDELIRFLCVPA 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V ++LLEL+LAGRL H +SL
Sbjct: 351 RSVNVILLELELAGRLERHRGNTISL 376
>gi|332185639|ref|ZP_08387387.1| DNA protecting protein DprA [Sphingomonas sp. S17]
gi|332014617|gb|EGI56674.1| DNA protecting protein DprA [Sphingomonas sp. S17]
Length = 359
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + E +R R+ L V + +D++I +G +V
Sbjct: 276 LEQIRPIDPRMVRAPGSAYTPPPPDEANDADRRRVTDLLGPVAVTVDELIRQSGRPPAIV 335
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
VLLEL+LAGRL H G+V+L
Sbjct: 336 QTVLLELELAGRLERHAGGRVALA 359
>gi|115525378|ref|YP_782289.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisA53]
gi|115519325|gb|ABJ07309.1| DNA protecting protein DprA [Rhodopseudomonas palustris BisA53]
Length = 372
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 35/79 (44%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + E + ER RI L PI +DD++ G +V VL
Sbjct: 293 PVLQRPIELPSREPDQPAALDEPGEGERARIIALLGPSPIGLDDLVRLAGAPPAIVRTVL 352
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAGRL H G VSL
Sbjct: 353 LELELAGRLERHGGGLVSL 371
>gi|218779037|ref|YP_002430355.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01]
gi|218760421|gb|ACL02887.1| DNA protecting protein DprA [Desulfatibacillum alkenivorans AK-01]
Length = 375
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCE-RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+++S T + +N P E + ++L PIHID ++ G+ + L
Sbjct: 292 EPAARSATAMEEPLNPAPAPAMGLAEDEQTVLEALGPYPIHIDVLVQRLGMPVGALSASL 351
Query: 69 LELDLAGRLCHHPEGKVSLTMHL 91
L+L+L G P S L
Sbjct: 352 LQLELKGLARQEPGKLFSRGTSL 374
>gi|92117808|ref|YP_577537.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
gi|91800702|gb|ABE63077.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
Length = 372
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P + + + H E +R RI L VPI +DD+I
Sbjct: 290 VRPIMRRPIELPAEEPGHAGPE----TEEPDASDRSRIVGLLGPVPIGLDDLIRMADASP 345
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
+V VLLEL+LAGRL H G VS+
Sbjct: 346 AIVRTVLLELELAGRLERHGGGLVSM 371
>gi|260431072|ref|ZP_05785043.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414900|gb|EEX08159.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 378
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P + F++Q P+ + I L P+ D +I + A
Sbjct: 296 PPQAPDLFNAQVSPPPAPGD---MRPQPAVDLQATILSRLGPSPVAEDQLIRDVQVPASA 352
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLTM 89
V VL+EL+L GR+ P G +SL +
Sbjct: 353 VGPVLVELELQGRIQRQPGGLLSLAV 378
>gi|254501021|ref|ZP_05113172.1| DNA protecting protein DprA, putative [Labrenzia alexandrii DFL-11]
gi|222437092|gb|EEE43771.1| DNA protecting protein DprA, putative [Labrenzia alexandrii DFL-11]
Length = 378
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
IE Q D N + + E + R RI +L P+ +D++I + +V+
Sbjct: 296 IEPVLPFDQ-DLNEPEKDLFSAAQEPDESLRARIISALGPTPVDLDELIRFAAVPPRMVH 354
Query: 66 LVLLELDLAGRLCHHPEGKVSLTM 89
++LLEL+LAGRL H K+SL +
Sbjct: 355 IILLELELAGRLERHRGNKISLLL 378
>gi|144898216|emb|CAM75080.1| DNA processing chain A [Magnetospirillum gryphiswaldense MSR-1]
Length = 377
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + R + +SL +P+ +D +I + A VV
Sbjct: 290 DLLRRPLAEDRRGPFEAAITAPPDESALAHARALVLESLGPMPVAVDLLIRECQLSASVV 349
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+VLLEL+LAGRL HP +V+L
Sbjct: 350 SMVLLELELAGRLERHPGQQVAL 372
>gi|114707187|ref|ZP_01440085.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
gi|114537383|gb|EAU40509.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
Length = 377
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P E S+ + + + + + E ER RI ++L P+ +DDI+ HTG
Sbjct: 292 LRPLDEG--RRSRGNDSLDEPEVLETFEEPAGDERDRIYEALGPTPVSVDDIVEHTGASP 349
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTM 89
V LV+LEL+LAGRL +G VS+ +
Sbjct: 350 GAVQLVVLELELAGRLERQRDGTVSILL 377
>gi|299135144|ref|ZP_07028335.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
gi|298590121|gb|EFI50325.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
Length = 373
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ D ++ E +R RI L PI IDD++ +V
Sbjct: 298 RPIELPMEEDEAPHESR------EPQDTDRARIVGLLGPSPIGIDDLVRMAETSPAIVRT 351
Query: 67 VLLELDLAGRLCHHPEGKVSLT 88
VLLEL++AGRL H G VSL
Sbjct: 352 VLLELEMAGRLERHGGGMVSLN 373
>gi|85716403|ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A]
gi|85696760|gb|EAQ34646.1| SMF protein [Nitrobacter sp. Nb-311A]
Length = 372
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 32/84 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ T E R RI L PI DD+I + VV
Sbjct: 289 AVRPIMRRPVDLPAEEPERGGTWTDEPAASARARIVALLGPAPIGPDDLIRMADVPPAVV 348
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
VLLEL+LAGRL H G VS+
Sbjct: 349 RTVLLELELAGRLERHGGGLVSMA 372
>gi|90423747|ref|YP_532117.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
gi|90105761|gb|ABD87798.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
Length = 372
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + E +R R+ L PI +DD++ G+ V VL
Sbjct: 293 PILERPIELPSREPDEAAPIDEPGSGDRARVTSLLGPSPIGLDDLVRLAGVSPAVARTVL 352
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAGRL H G VSL
Sbjct: 353 LELELAGRLERHGGGLVSL 371
>gi|218531570|ref|YP_002422386.1| DNA protecting protein DprA [Methylobacterium chloromethanicum CM4]
gi|218523873|gb|ACK84458.1| DNA protecting protein DprA [Methylobacterium chloromethanicum CM4]
Length = 397
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ PE +R R+ L+ P+ D++ TG+ +V LLEL+L GR+
Sbjct: 326 PAAAEPVEAPPEPRD-DRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIE 384
Query: 79 HHPEGKVSL 87
H G VSL
Sbjct: 385 RHGSGTVSL 393
>gi|254562490|ref|YP_003069585.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
gi|254269768|emb|CAX25740.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
Length = 397
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ PE +R R+ L+ P+ D++ TG+ +V LLEL+L GR+
Sbjct: 326 PAAAEPVEAPPEPRD-DRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIE 384
Query: 79 HHPEGKVSL 87
H G VSL
Sbjct: 385 RHGSGTVSL 393
>gi|153010990|ref|YP_001372204.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
gi|151562878|gb|ABS16375.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
Length = 388
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 2 VHPQI-----EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
+ P + N + + + P T+ +R + +L VP ID ++ H
Sbjct: 294 LRPLAGPNAYQANIPAQPDLLSPALEEPESLQPFATEEQRDIVIDALGPVPTDIDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TG++ V L+LLELDLAGRL + +V+L
Sbjct: 354 TGMDTGAVQLILLELDLAGRLHRYAGNQVAL 384
>gi|294084185|ref|YP_003550943.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663758|gb|ADE38859.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 367
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 14 QSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + + PE R I + + P+ IDDIIH + A +V+ LL
Sbjct: 284 TASQPPPPPVQDANAPEPNSNAVNKCRNIITEGVGPDPVAIDDIIHLCDMPASIVWAALL 343
Query: 70 ELDLAGRLCHHPEGKVS 86
EL+LAG + H +VS
Sbjct: 344 ELELAGVILRHHGNRVS 360
>gi|27380215|ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
gi|27353369|dbj|BAC50369.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 380
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P +E+ + + + +R +I L VPI +DD++ +G
Sbjct: 299 VAPIMERPLVIPA-----REPDSGPFESDPQTHDRDQITGLLGPVPIGLDDLVRMSGASP 353
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
+V VLLEL+LAGRL H G VSL
Sbjct: 354 AIVRTVLLELELAGRLERHGGGLVSL 379
>gi|218513189|ref|ZP_03510029.1| DNA processing chain A protein [Rhizobium etli 8C-3]
Length = 352
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F S T+ +R RI +L P+ IDDII HTG+ A
Sbjct: 281 LAPLAQFELFPSSMAEEPTRGG-GAMTMPPGDTDRNRIIDALGPTPVEIDDIIRHTGLSA 339
Query: 62 PVVYLVLLELDLA 74
VYL+LLELD++
Sbjct: 340 SAVYLILLELDIS 352
>gi|163852730|ref|YP_001640773.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
gi|163664335|gb|ABY31702.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
Length = 397
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
I PE +R R+ L+ P+ D++ TG+ +V LLEL+L GR+
Sbjct: 326 PAAAEPIEAPPEPRD-DRARLIACLSPTPVGTDELARSTGLSVRIVQTTLLELELDGRIE 384
Query: 79 HHPEGKVSL 87
H G VSL
Sbjct: 385 RHGSGTVSL 393
>gi|114327469|ref|YP_744626.1| DNA processing protein [Granulibacter bethesdensis CGDNIH1]
gi|114315643|gb|ABI61703.1| DNA processing protein [Granulibacter bethesdensis CGDNIH1]
Length = 378
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 8 QNFFSSQSDTNHTKNINI--THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ F S S + T + +I L P+ +DD+I + V
Sbjct: 292 PDLFLSPSGPAPSAKQKPGGAFTVSETNGLKEKILLLLGPDPVAVDDLIRRCQLSPSEVV 351
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
LLE++L+ + P +V+
Sbjct: 352 AALLEMELSAHVVSLPGNRVAR 373
>gi|114321777|ref|YP_743460.1| DNA protecting protein DprA [Alkalilimnicola ehrlichii MLHE-1]
gi|114228171|gb|ABI57970.1| DNA protecting protein DprA [Alkalilimnicola ehrlichii MLHE-1]
Length = 379
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
++Q + D + E + +++ + P+ +D ++ G+ A V
Sbjct: 292 VQQALPLAIPDRTAGVTADNGGSDAGPDPEYAALLEAMGHDPVALDTLVGRCGLTADAVS 351
Query: 66 LVLLELDLAGRLCHHPEGKVSLT 88
+LL L+L GR+ P G+ T
Sbjct: 352 SMLLLLELQGRVQALPGGRYQRT 374
>gi|238021547|ref|ZP_04601973.1| hypothetical protein GCWU000324_01447 [Kingella oralis ATCC 51147]
gi|237866161|gb|EEP67203.1| hypothetical protein GCWU000324_01447 [Kingella oralis ATCC 51147]
Length = 389
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINIT-HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P+ + + T PE + + PIH D + T
Sbjct: 301 LKPKTHAAKPKPTLSQPLSTELPTTTPSPEPESTNEHPLLTKMGYDPIHPDTLAEQTEQP 360
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
A +Y L E +L G + G+
Sbjct: 361 AADIYAQLTEWELDGIVASMAGGRYQR 387
>gi|254491244|ref|ZP_05104425.1| DNA protecting protein DprA, putative [Methylophaga thiooxidans
DMS010]
gi|224463757|gb|EEF80025.1| DNA protecting protein DprA, putative [Methylophaga thiooxydans
DMS010]
Length = 345
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + + + L PI +D +I ++G+ A V +LL L+L G +
Sbjct: 275 PAAQDSVSEKPERDGDYQILFEHLGFDPISVDSLIENSGLTADAVSSMLLLLELQGEVES 334
Query: 80 HPEGKVSLT 88
P G+ T
Sbjct: 335 LPGGRYVRT 343
>gi|209884919|ref|YP_002288776.1| SMF protein [Oligotropha carboxidovorans OM5]
gi|209873115|gb|ACI92911.1| SMF protein [Oligotropha carboxidovorans OM5]
Length = 377
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 33/81 (40%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ E +R RI L PI IDD++ + VV V
Sbjct: 294 PIMARPIELPFEEDDSGRDESREPEDSDRARIVGLLGPSPIGIDDLVRLSDSSPAVVRTV 353
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
LLEL+LAGRL H G VSL
Sbjct: 354 LLELELAGRLDRHGAGLVSLN 374
>gi|330827123|ref|YP_004390426.1| DNA protecting protein DprA [Alicycliphilus denitrificans K601]
gi|329312495|gb|AEB86910.1| DNA protecting protein DprA [Alicycliphilus denitrificans K601]
Length = 379
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ P + +L P+ +D ++ TG+ A + + LLEL+L G++
Sbjct: 306 PAAGQAPESDAPPPVAPTHQEVLDALGFDPLGLDALVARTGLPAATLQVRLLELELEGQV 365
Query: 78 CHHPEGKVSL 87
P G
Sbjct: 366 ARLPGGMFQR 375
>gi|240140065|ref|YP_002964542.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
gi|240010039|gb|ACS41265.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
Length = 397
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ PE +R R+ L+ P+ D++ TG+ +V LLEL+L G++
Sbjct: 326 PAAAEPVEAPPEPRD-DRERLIACLSPAPVGTDELARSTGLSVRIVQTTLLELELDGQIE 384
Query: 79 HHPEGKVSL 87
H G VSL
Sbjct: 385 RHGSGTVSL 393
>gi|261856670|ref|YP_003263953.1| DNA protecting protein DprA [Halothiobacillus neapolitanus c2]
gi|261837139|gb|ACX96906.1| DNA protecting protein DprA [Halothiobacillus neapolitanus c2]
Length = 384
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
DT+ + + + E+ +I L P D +I +G+ V +LL
Sbjct: 306 LRQTDDTSLFEPESSPALAAHLDPEQQKILDCLGFDPQSADTLIASSGLTPAEVSSILLM 365
Query: 71 LDLAGRLCHHPEGKVSLT 88
L+LAG + P G T
Sbjct: 366 LELAGHVTTLPGGLYVRT 383
>gi|121999102|ref|YP_001003889.1| DNA protecting protein DprA [Halorhodospira halophila SL1]
gi|121590507|gb|ABM63087.1| DNA protecting protein DprA [Halorhodospira halophila SL1]
Length = 388
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
F + + P + RI ++L + P+ +D + +G+ + +LL
Sbjct: 307 EFPGTVCEAPVNAPSESTSPA-ADPDEARILEALGHDPLTLDTLQQRSGLTLDRLSSILL 365
Query: 70 ELDLAGRLCHHPEGKVSL 87
++L G L P G+
Sbjct: 366 TMELKGLLTAVPGGRYQR 383
>gi|254447541|ref|ZP_05061007.1| DNA protecting protein DprA [gamma proteobacterium HTCC5015]
gi|198262884|gb|EDY87163.1| DNA protecting protein DprA [gamma proteobacterium HTCC5015]
Length = 373
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ+ ++ + + Q++ P+ +D ++ T +A
Sbjct: 288 LAPQLRARL--AEGVETSVSASEALSADPPLDSDHEALLQAMGFDPVTLDALVQQTDFDA 345
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +LL L+L GR+ P G+
Sbjct: 346 SELASMLLILELEGRVSAEPGGRYQR 371
>gi|188582755|ref|YP_001926200.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
gi|179346253|gb|ACB81665.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
Length = 397
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + E +R R+ L+ P+ D++ TG+ VV LLEL+L GR+
Sbjct: 326 PGADEPVETGSEPED-DRTRLIARLSPTPVATDELARSTGLPVRVVQTTLLELELDGRIE 384
Query: 79 HHPEGKVSL 87
H G VSL
Sbjct: 385 RHGSGTVSL 393
>gi|88811386|ref|ZP_01126641.1| SMF protein [Nitrococcus mobilis Nb-231]
gi|88791275|gb|EAR22387.1| SMF protein [Nitrococcus mobilis Nb-231]
Length = 371
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
T+ + R+ +L P+ D ++ TG+ + +LL+L+
Sbjct: 292 PPFAGAMTERPADSGKTPSLDWGYRRVLAALGYDPVPADVLLQRTGLTPDTLSAMLLQLE 351
Query: 73 LAGRLCHHPEGKVSL 87
L G + P G+ +
Sbjct: 352 LMGYVATCPGGRYAR 366
>gi|292493777|ref|YP_003529216.1| DNA protecting protein DprA [Nitrosococcus halophilus Nc4]
gi|291582372|gb|ADE16829.1| DNA protecting protein DprA [Nitrosococcus halophilus Nc4]
Length = 368
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L P+ ID ++ G+ A V +LL L+L GR+ P G+
Sbjct: 307 DPEYQILLDCLGYDPLPIDTLVERCGLTAEAVSSMLLMLELQGRITALPGGRY 359
>gi|77166459|ref|YP_344984.1| SMF protein [Nitrosococcus oceani ATCC 19707]
gi|254435425|ref|ZP_05048932.1| DNA protecting protein DprA, putative [Nitrosococcus oceani AFC27]
gi|76884773|gb|ABA59454.1| DNA protecting protein DprA [Nitrosococcus oceani ATCC 19707]
gi|207088536|gb|EDZ65808.1| DNA protecting protein DprA, putative [Nitrosococcus oceani AFC27]
Length = 368
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ E + L P+ ID ++ G+ A V +LL L+L GR+
Sbjct: 294 CQEAPQKIEASTDDLEYQLLLDCLGYDPLPIDLLVERCGLTAEAVSSMLLILELQGRITA 353
Query: 80 HPEGKV 85
P G+
Sbjct: 354 LPGGRY 359
>gi|223937270|ref|ZP_03629176.1| SMF family protein [bacterium Ellin514]
gi|223894055|gb|EEF60510.1| SMF family protein [bacterium Ellin514]
Length = 252
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 31/81 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + ++ + ++ +L+N +ID+II H+G+ + V
Sbjct: 168 LSEFEYLFPSTNRPPGASETGVLPALNLSENEQKVYDALSNEESNIDEIIRHSGLPSSAV 227
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
+ LL L++ + P
Sbjct: 228 SVALLGLEMKRLIRQLPGKMF 248
>gi|288958693|ref|YP_003449034.1| DNA processing protein [Azospirillum sp. B510]
gi|288911001|dbj|BAI72490.1| DNA processing protein [Azospirillum sp. B510]
Length = 378
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIE 60
+ D E + + R + ++L + P+ ID+++ +
Sbjct: 291 LRAPTLAERRRDLFSAAIHPPGKAAEPDESDLARARALVLENLGHSPVTIDELVRGCQLS 350
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
APVV V+LEL+LAGR+ P +VSL
Sbjct: 351 APVVLTVVLELELAGRVQRLPGHQVSLA 378
>gi|83594524|ref|YP_428276.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
gi|83577438|gb|ABC23989.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
Length = 374
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ P I + + N+ R R+ ++L P+ +D++I +
Sbjct: 287 ILSPLIARPM-AEDKPQNYASAPPSPIADSTIDAARPRVIEALGMSPVGVDEVIRLCTLP 345
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
VV +VLLEL+LAGRL +V L
Sbjct: 346 PAVVAVVLLELELAGRLDRLVGNRVCL 372
>gi|189499391|ref|YP_001958861.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
gi|189494832|gb|ACE03380.1| DNA protecting protein DprA [Chlorobium phaeobacteroides BS1]
Length = 382
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 25/71 (35%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
K I T E I + P+HID + TGIE + + L E++L
Sbjct: 309 PATPEKTIPDTPVRVPLTPEETIILDHFSEEPLHIDMLAEKTGIEPSELLVHLFEMELKN 368
Query: 76 RLCHHPEGKVS 86
+ P
Sbjct: 369 LIEQQPGQMFC 379
>gi|225075474|ref|ZP_03718673.1| hypothetical protein NEIFLAOT_00479 [Neisseria flavescens
NRL30031/H210]
gi|224953193|gb|EEG34402.1| hypothetical protein NEIFLAOT_00479 [Neisseria flavescens
NRL30031/H210]
Length = 396
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P+ Q + P + +++ PIH D + T A
Sbjct: 310 VKPKNNQTERLQPKTRADEPQRPSENLPAAPST--SALLEAMGYDPIHPDILAQQTNTAA 367
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
VY LLE +L G + P G+
Sbjct: 368 ADVYAQLLEYELDGIVAALPGGRYQR 393
>gi|217968559|ref|YP_002353793.1| DNA protecting protein DprA [Thauera sp. MZ1T]
gi|217505886|gb|ACK52897.1| DNA protecting protein DprA [Thauera sp. MZ1T]
Length = 387
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER R+ +++ + P+ +D I G+ +Y +LL L+L GRL P G+
Sbjct: 330 LDGERTRVLEAIGHDPVDLDTIAARCGLTVDALYAILLPLELEGRLAKLPGGRFQR 385
>gi|254695655|ref|ZP_05157483.1| SMF protein [Brucella abortus bv. 3 str. Tulya]
gi|261216055|ref|ZP_05930336.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
gi|260917662|gb|EEX84523.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
Length = 393
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L P+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPAPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|294507187|ref|YP_003571245.1| SMF protein [Salinibacter ruber M8]
gi|294343515|emb|CBH24293.1| SMF protein [Salinibacter ruber M8]
Length = 331
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E E R+ +L+ P+HID + TG+ LLEL+ G + +
Sbjct: 271 PTEELSGEAERLYDALSETPVHIDALCEETGLSPSEALPTLLELEFQGWVRQLAGKQFRR 330
Query: 88 T 88
+
Sbjct: 331 S 331
>gi|256828287|ref|YP_003157015.1| DNA protecting protein DprA [Desulfomicrobium baculatum DSM 4028]
gi|256577463|gb|ACU88599.1| DNA protecting protein DprA [Desulfomicrobium baculatum DSM 4028]
Length = 367
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ E E+ + + L +H+D + TG A V LL ++L G +
Sbjct: 296 PEAPVPEFLPREPDDPEQRVVHRLLAAGEALHVDTLTRRTGWAANKVSSTLLFMELQGLV 355
Query: 78 CHHPEGKVSLTM 89
P L
Sbjct: 356 RQLPGMYYVLAT 367
>gi|170746908|ref|YP_001753168.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
gi|170653430|gb|ACB22485.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
Length = 403
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 34/82 (41%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
N + P Q +R RI L P+ D++ G+ A +V
Sbjct: 319 APLNPLPQRRAGASAPCPARDDRPPEPQDDRARIVALLGPSPVGTDELARSAGVGARIVQ 378
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
VLLEL+L GR+ H G VSL
Sbjct: 379 SVLLELELDGRIERHGSGTVSL 400
>gi|254720411|ref|ZP_05182222.1| SMF protein [Brucella sp. 83/13]
gi|265985430|ref|ZP_06098165.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306839012|ref|ZP_07471833.1| DNA protecting protein DprA [Brucella sp. NF 2653]
gi|264664022|gb|EEZ34283.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306405918|gb|EFM62176.1| DNA protecting protein DprA [Brucella sp. NF 2653]
Length = 393
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPGDPTDDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|86749541|ref|YP_486037.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
gi|86572569|gb|ABD07126.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
Length = 378
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 32/52 (61%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI L P+ IDD+I +GI VV VLLEL+LAGRL H G VSL
Sbjct: 326 RSRIVNLLGPSPVGIDDLIRLSGIAPAVVRTVLLELELAGRLERHGGGLVSL 377
>gi|297717816|gb|ADI50051.1| putative DNA processing protein DprA [Candidatus Odyssella
thessalonicensis L13]
Length = 361
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ P+ S + ++ P + E I + L+ PI I+ I +
Sbjct: 274 ILKPEFNLTMLSEPEAEAYVASVEDFSVPASLKEE---ILRGLSETPIEINFIAQDFKLN 330
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ + ++LEL+L G + G VS++
Sbjct: 331 SQEIMAIILELELEGLIVRQANGTVSIST 359
>gi|118590183|ref|ZP_01547586.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
gi|118437155|gb|EAV43793.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
Length = 378
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 2 VHPQIEQN-FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + F S+T + + R R+ +L P+ +D++I +
Sbjct: 296 LAPTLPFGRQFREDSETTPLSPSD------PDEKLRERVLAALGPTPVDMDELIRFADGD 349
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
A V++VLLEL+LAGRL H K+S M
Sbjct: 350 ARSVHVVLLELELAGRLERHRGNKISALM 378
>gi|163844754|ref|YP_001622409.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
gi|163675477|gb|ABY39587.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
Length = 393
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|326410760|gb|ADZ67824.1| DNA protecting protein DprA [Brucella melitensis M28]
gi|326554052|gb|ADZ88691.1| DNA protecting protein DprA [Brucella melitensis M5-90]
Length = 393
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|23500346|ref|NP_699786.1| DNA processing protein DprA [Brucella suis 1330]
gi|161620664|ref|YP_001594550.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|254702977|ref|ZP_05164805.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|260568110|ref|ZP_05838579.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261753586|ref|ZP_05997295.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|23463962|gb|AAN33791.1| DNA processing protein DprA, putative [Brucella suis 1330]
gi|161337475|gb|ABX63779.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|260154775|gb|EEW89856.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261743339|gb|EEY31265.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
Length = 393
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|78067948|ref|YP_370717.1| SMF protein [Burkholderia sp. 383]
gi|77968693|gb|ABB10073.1| DNA protecting protein DprA [Burkholderia sp. 383]
Length = 448
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 13 SQSDTNHTKNINITHYPE-YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ T ++ + P + +L P+ + + H+G+ V++ LL L
Sbjct: 356 AAPATAPARDEAPSPAPPLPGTPSEQAVLAALGYGPVTYEWLAEHSGLSDDVLHRALLAL 415
Query: 72 DLAGRLCHHPEGKVSLTMHLPSP 94
+LAGR+ P G+ + +P
Sbjct: 416 ELAGRVASLPGGRFARLDAARTP 438
>gi|294853600|ref|ZP_06794272.1| DNA processing protein [Brucella sp. NVSL 07-0026]
gi|294819255|gb|EFG36255.1| DNA processing protein [Brucella sp. NVSL 07-0026]
Length = 393
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|256111481|ref|ZP_05452495.1| SMF protein [Brucella melitensis bv. 3 str. Ether]
gi|265992978|ref|ZP_06105535.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str. Ether]
gi|262763848|gb|EEZ09880.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str. Ether]
Length = 388
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQ-----NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + T ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLAQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|306845936|ref|ZP_07478503.1| DNA protecting protein DprA [Brucella sp. BO1]
gi|306273571|gb|EFM55416.1| DNA protecting protein DprA [Brucella sp. BO1]
Length = 393
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|225686388|ref|YP_002734360.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|256262471|ref|ZP_05465003.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
gi|225642493|gb|ACO02406.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|263092207|gb|EEZ16504.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
Length = 393
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|75676200|ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255]
gi|74421070|gb|ABA05269.1| SMF protein [Nitrobacter winogradskyi Nb-255]
Length = 372
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 32/83 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ E +R RI L PI +DD+I VV
Sbjct: 289 AVRPIIRRPVDLPAEEPEPGEPWTEEPAASDRARIIALLGPAPIGLDDLIRMANAPPAVV 348
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
VLLEL+LAGRL H G VS+
Sbjct: 349 RTVLLELELAGRLERHGGGLVSM 371
>gi|319639529|ref|ZP_07994276.1| SMF-family protein [Neisseria mucosa C102]
gi|317399100|gb|EFV79774.1| SMF-family protein [Neisseria mucosa C102]
Length = 396
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P+ +Q + P + + +++ PIH D + T A
Sbjct: 310 VKPKNDQTKRLQPKAIADEPQRPSENPPAASST--STLLEAMGYDPIHSDILAQQTNTAA 367
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
VY LLE +L G + P G+
Sbjct: 368 ADVYAQLLEYELDGIVAALPGGRYQR 393
>gi|17989012|ref|NP_541645.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|62317541|ref|YP_223394.1| DNA processing protein DprA [Brucella abortus bv. 1 str. 9-941]
gi|83269522|ref|YP_418813.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189022796|ref|YP_001932537.1| SMF protein [Brucella abortus S19]
gi|225629094|ref|ZP_03787127.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237817089|ref|ZP_04596081.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|254698822|ref|ZP_05160650.1| SMF protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254705901|ref|ZP_05167729.1| SMF protein [Brucella pinnipedialis M163/99/10]
gi|254711129|ref|ZP_05172940.1| SMF protein [Brucella pinnipedialis B2/94]
gi|254712412|ref|ZP_05174223.1| SMF protein [Brucella ceti M644/93/1]
gi|254715484|ref|ZP_05177295.1| SMF protein [Brucella ceti M13/05/1]
gi|254732269|ref|ZP_05190847.1| SMF protein [Brucella abortus bv. 4 str. 292]
gi|256015379|ref|YP_003105388.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|256029510|ref|ZP_05443124.1| SMF protein [Brucella pinnipedialis M292/94/1]
gi|256043499|ref|ZP_05446426.1| SMF protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256059205|ref|ZP_05449411.1| SMF protein [Brucella neotomae 5K33]
gi|256157705|ref|ZP_05455623.1| SMF protein [Brucella ceti M490/95/1]
gi|256253323|ref|ZP_05458859.1| SMF protein [Brucella ceti B1/94]
gi|256256223|ref|ZP_05461759.1| SMF protein [Brucella abortus bv. 9 str. C68]
gi|260167399|ref|ZP_05754210.1| DNA processing protein DprA, putative [Brucella sp. F5/99]
gi|260544777|ref|ZP_05820598.1| SMF protein [Brucella abortus NCTC 8038]
gi|260564694|ref|ZP_05835179.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260760064|ref|ZP_05872412.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260763303|ref|ZP_05875635.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260882451|ref|ZP_05894065.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|261217219|ref|ZP_05931500.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261220439|ref|ZP_05934720.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|261313331|ref|ZP_05952528.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261318720|ref|ZP_05957917.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261320090|ref|ZP_05959287.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261323154|ref|ZP_05962351.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261756809|ref|ZP_06000518.1| SMF protein [Brucella sp. F5/99]
gi|265986518|ref|ZP_06099075.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|265989917|ref|ZP_06102474.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str. Rev.1]
gi|265996210|ref|ZP_06108767.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|297249580|ref|ZP_06933281.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
gi|17984851|gb|AAL53909.1| smf protein [Brucella melitensis bv. 1 str. 16M]
gi|62197734|gb|AAX76033.1| hypothetical DprA, DNA processing protein [Brucella abortus bv. 1
str. 9-941]
gi|82939796|emb|CAJ12804.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189021370|gb|ACD74091.1| SMF protein [Brucella abortus S19]
gi|225615590|gb|EEH12639.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237787902|gb|EEP62118.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|255998039|gb|ACU49726.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|260098048|gb|EEW81922.1| SMF protein [Brucella abortus NCTC 8038]
gi|260152337|gb|EEW87430.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260670382|gb|EEX57322.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260673724|gb|EEX60545.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260871979|gb|EEX79048.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|260919023|gb|EEX85676.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|260922308|gb|EEX88876.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261292780|gb|EEX96276.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261297943|gb|EEY01440.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261299134|gb|EEY02631.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261302357|gb|EEY05854.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261736793|gb|EEY24789.1| SMF protein [Brucella sp. F5/99]
gi|262550507|gb|EEZ06668.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|263000586|gb|EEZ13276.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str. Rev.1]
gi|264658715|gb|EEZ28976.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|297173449|gb|EFH32813.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
Length = 393
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 384
>gi|258545463|ref|ZP_05705697.1| DNA processing protein DprA [Cardiobacterium hominis ATCC 15826]
gi|258519296|gb|EEV88155.1| DNA processing protein DprA [Cardiobacterium hominis ATCC 15826]
Length = 369
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++P N E T + + +++ P +DD++ +
Sbjct: 290 LYPLARANLEMQIQSAPPAA--------ETTDNDSHPLLEAMGFDPCRVDDLVARLDLTP 341
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L+ +L GR+ P G
Sbjct: 342 AEISAMLIIFELDGRVAALPGGMFQR 367
>gi|126729116|ref|ZP_01744930.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
gi|126710106|gb|EBA09158.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
Length = 372
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 30/85 (35%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ+ + T T RI L P+ D +I G +
Sbjct: 285 QPQLGLPDPEGAAVDAVKAPEPETRTLRQTADLHTRILDRLGPSPLAEDQLIRDLGAASS 344
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
V L +L+L GR+ P G +SL
Sbjct: 345 HVSPALTDLELEGRIRRQPGGFLSL 369
>gi|300115534|ref|YP_003762109.1| DNA protecting protein DprA [Nitrosococcus watsonii C-113]
gi|299541471|gb|ADJ29788.1| DNA protecting protein DprA [Nitrosococcus watsonii C-113]
Length = 368
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ E + + L P+ ID ++ G+ A V +LL L+L G +
Sbjct: 295 QESPKEIEASTDDPEYRLLLECLGYDPLPIDRLVERCGLTAEAVSSMLLVLELQGCITAL 354
Query: 81 PEGKV 85
P G
Sbjct: 355 PGGHY 359
>gi|85705143|ref|ZP_01036243.1| DNA processing protein DprA, putative [Roseovarius sp. 217]
gi|85670465|gb|EAQ25326.1| DNA processing protein DprA, putative [Roseovarius sp. 217]
Length = 342
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPE----YTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ ++ P T +I L P+ D +I
Sbjct: 254 LPQIPLLKPAPAPQTEMPLDAAPVPPRSLRETASLHAQILNRLGPSPLAEDQLIRDLSTP 313
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
A V LL+L+L GR+ HP G ++L
Sbjct: 314 AHKVAPALLDLELDGRITRHPGGLLALA 341
>gi|296134587|ref|YP_003641829.1| DNA protecting protein DprA [Thiomonas intermedia K12]
gi|295794709|gb|ADG29499.1| DNA protecting protein DprA [Thiomonas intermedia K12]
Length = 379
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 28/74 (37%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ T++ + I ++L DD+ TG A + LLEL+L
Sbjct: 302 PAAKTTTEDASPAAEAPPEGDTECDILRALGYDIRSFDDLSARTGWPADRLGARLLELEL 361
Query: 74 AGRLCHHPEGKVSL 87
G++ P G+
Sbjct: 362 QGQVARLPGGRFQR 375
>gi|222112557|ref|YP_002554821.1| DNA protecting protein dpra [Acidovorax ebreus TPSY]
gi|221732001|gb|ACM34821.1| DNA protecting protein DprA [Acidovorax ebreus TPSY]
Length = 386
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + +L P+ +D ++ TG++A + + LLEL+L GR+ P G
Sbjct: 323 SEEPLAPSYQCVLDALGFDPLGLDALVARTGLDAATLQVRLLELELEGRVARLPGGLFQR 382
Query: 88 T 88
T
Sbjct: 383 T 383
>gi|254691038|ref|ZP_05154292.1| SMF protein [Brucella abortus bv. 6 str. 870]
Length = 381
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 282 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 341
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 342 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 372
>gi|313115002|ref|ZP_07800495.1| DNA protecting protein DprA [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622693|gb|EFQ06155.1| DNA protecting protein DprA [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 378
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 31/82 (37%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ + PE ++ + P+ I+++ +G+ V+
Sbjct: 296 SAADLLGPLGLRLQSAAAVTAKQPEPLSENERKVLSCIGPQPLGIEELCVRSGLPTAVLL 355
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L++L+L+GR+ P + +
Sbjct: 356 GTLMKLELSGRVLCMPGKRYVI 377
>gi|197104784|ref|YP_002130161.1| dprA protein [Phenylobacterium zucineum HLK1]
gi|196478204|gb|ACG77732.1| dprA protein [Phenylobacterium zucineum HLK1]
Length = 362
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
E R R+ L+ P+ D+++ TG AP V+ L+EL LAGR
Sbjct: 292 EPERPRFAGAPPVEPDDALRERVAALLSPTPVSRDELVRATGAPAPAVFAALVELSLAGR 351
Query: 77 LCHHPEGKVS 86
P G VS
Sbjct: 352 ADLLPGGMVS 361
>gi|116747661|ref|YP_844348.1| DNA protecting protein DprA [Syntrophobacter fumaroxidans MPOB]
gi|116696725|gb|ABK15913.1| DNA protecting protein DprA [Syntrophobacter fumaroxidans MPOB]
Length = 386
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P I +S + + + ++ + L+ P HID+I T
Sbjct: 297 LRPLIR------RSAAPPGEPDERETPVSGLEPDELQALRELDGNPRHIDEIARSTQWPV 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
V VL L+L G P
Sbjct: 351 GKVMAVLSNLELKGVARQLPGKYF 374
>gi|239818073|ref|YP_002946983.1| DNA protecting protein DprA [Variovorax paradoxus S110]
gi|239804650|gb|ACS21717.1| DNA protecting protein DprA [Variovorax paradoxus S110]
Length = 382
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + S + +L P+ +D + TG A +
Sbjct: 299 LEELPSLHTGSAAAPASANGNAGGAP---ASEEPLLDALGFDPVSLDALSARTGWSAAAL 355
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
LLEL+L G + P G
Sbjct: 356 QARLLELELDGHVARLPGGLFQRA 379
>gi|193214336|ref|YP_001995535.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110]
gi|193087813|gb|ACF13088.1| DNA protecting protein DprA [Chloroherpeton thalassium ATCC 35110]
Length = 386
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 29/83 (34%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E +SQ + E E I +N PI ID+++ +G+ +
Sbjct: 302 LNELQPHTSQINLFEENGHRPLPPQESLSQEESDILALINASPIQIDELVEKSGMAVSDL 361
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L EL+L ++ P
Sbjct: 362 QCTLFELELKHQVEQLPGKFFKR 384
>gi|304399255|ref|ZP_07381121.1| DNA protecting protein DprA [Pantoea sp. aB]
gi|304353181|gb|EFM17562.1| DNA protecting protein DprA [Pantoea sp. aB]
Length = 374
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++Q+D +++ + P + ++ + +D + G PV+ LL
Sbjct: 290 LPATQADEIYSEVSDDAPLPFAD------VLANVGDDVTPVDVVAERAGQSVPVISAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|298370610|ref|ZP_06981925.1| smf protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298281220|gb|EFI22710.1| smf protein [Neisseria sp. oral taxon 014 str. F0314]
Length = 393
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 5 QIEQNFFSSQSDTNHT---KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
I+++ ++ + Q + ++ P+H D + A
Sbjct: 305 AIKRDTSETRKPEPPATVGRPSENVGTEAGRQAASSPLLDAMGYDPVHPDTLAQQLQFPA 364
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
VY LLEL+L G++ G+
Sbjct: 365 ADVYAELLELELDGKVASLAGGRYQR 390
>gi|83814168|ref|YP_445312.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
gi|83755562|gb|ABC43675.1| DNA processing protein DprA [Salinibacter ruber DSM 13855]
Length = 388
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E E R+ +L+ P+HID + TG+ LLEL+ G + +
Sbjct: 328 PTEELSGEAERLYDALSETPVHIDALCEETGLSPSEALPTLLELEFQGWVRQLAGKQFRR 387
Query: 88 T 88
+
Sbjct: 388 S 388
>gi|297617128|ref|YP_003702287.1| DNA protecting protein DprA [Syntrophothermus lipocalidus DSM
12680]
gi|297144965|gb|ADI01722.1| DNA protecting protein DprA [Syntrophothermus lipocalidus DSM
12680]
Length = 366
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L P+H+D ++ +G+ + +LLEL + G + P
Sbjct: 308 SSEFDMVLDLLGTEPVHLDQLVRLSGLTPGQLSGMLLELQIRGIIEVLPGNYF 360
>gi|167585075|ref|ZP_02377463.1| DNA protecting protein DprA [Burkholderia ubonensis Bu]
Length = 327
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 29/89 (32%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
++ + + +L P+ + + +G+ ++
Sbjct: 229 PEDVLDEYGLRAESPGDAPPAAATSGDAAEQAVLAALGYGPVTYEWLAERSGLSDDALHR 288
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
LL L+LAGR+ G+ +PQ
Sbjct: 289 ALLALELAGRVASVAGGRFVRLGGPAAPQ 317
>gi|308188322|ref|YP_003932453.1| Protein smf [Pantoea vagans C9-1]
gi|308058832|gb|ADO11004.1| Protein smf [Pantoea vagans C9-1]
Length = 374
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+Q+D +++ + P + ++ + +D + G PV+ LL
Sbjct: 290 LPVAQADEIYSEVRDDAPLPFAD------VLANVGDDVTPVDVVAERAGQSVPVISAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|148558431|ref|YP_001257589.1| SMF protein [Brucella ovis ATCC 25840]
gi|148369716|gb|ABQ62588.1| SMF protein [Brucella ovis ATCC 25840]
Length = 393
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQ-----NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + T ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPKQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAG L +P +V++
Sbjct: 354 TGIETDAIQLILLELDLAGHLLRYPGNRVAI 384
>gi|134297377|ref|YP_001121112.1| DNA protecting protein DprA [Burkholderia vietnamiensis G4]
gi|134140534|gb|ABO56277.1| DNA protecting protein DprA [Burkholderia vietnamiensis G4]
Length = 449
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + P + +L P+ + + H+ + V+
Sbjct: 351 AASPDTDTDTVADAPAVPPRTACAPA-NDPAERAVLAALGYGPVTYEWLAEHSDLPDDVL 409
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ LL L+LAGR+ G+ + P+P
Sbjct: 410 HRALLALELAGRVASVAGGRFARLDLAPTP 439
>gi|159901058|ref|YP_001547305.1| DNA protecting protein DprA [Herpetosiphon aurantiacus ATCC 23779]
gi|159894097|gb|ABX07177.1| DNA protecting protein DprA [Herpetosiphon aurantiacus ATCC 23779]
Length = 369
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 29/91 (31%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P Q + + + + L+ P HID++ G+ A
Sbjct: 275 PLRSVEQLLEQLNLHQAQAQQTVSTIVPETPAEALLLPHLSGQPTHIDELGRSCGLAAHD 334
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ L ++L G + H L P+P
Sbjct: 335 LAATLGLMELKGMVRHVGGMHYVLARETPAP 365
>gi|120613317|ref|YP_972995.1| DNA protecting protein DprA [Acidovorax citrulli AAC00-1]
gi|120591781|gb|ABM35221.1| DNA protecting protein DprA [Acidovorax citrulli AAC00-1]
Length = 408
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIE 60
E ++ S + + E + +SL P+ +D ++ TG++
Sbjct: 318 LEELRLPAAPSTASPSARPEGADGSEPPDRAASGPHADVLESLGFDPMGLDALVARTGLD 377
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
A + + LLEL+L G++ P G
Sbjct: 378 ASRLQVALLELELEGQVARLPGGLFQR 404
>gi|306841750|ref|ZP_07474436.1| DNA protecting protein DprA [Brucella sp. BO2]
gi|306288155|gb|EFM59542.1| DNA protecting protein DprA [Brucella sp. BO2]
Length = 345
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQ-----NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + + T ER + +L VP+ +D ++ H
Sbjct: 246 LLPLIRPGDPADDEPEQPNLLAQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 305
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 306 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 336
>gi|326387674|ref|ZP_08209280.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207720|gb|EGD58531.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
Length = 383
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + E I L P+ +D++I TG V + L+EL+LAGRL
Sbjct: 314 AAFDGAPPDYGDDPALTEE--IAAMLGPAPVPVDELIRQTGAPPGSVQMALVELELAGRL 371
Query: 78 CHHPEGKVSL 87
H G+VS+
Sbjct: 372 HRHAGGRVSI 381
>gi|115353234|ref|YP_775073.1| DNA protecting protein DprA [Burkholderia ambifaria AMMD]
gi|115283222|gb|ABI88739.1| DNA protecting protein DprA [Burkholderia ambifaria AMMD]
Length = 422
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
++ + +L P+ + + H+G+ V+Y LL L+LAGR+ P
Sbjct: 341 SPVSEGAPPDTPAERSVLAALGYGPVTYEWLAEHSGLSDDVLYSALLALELAGRVASVPG 400
Query: 83 GKVSLTMHLPSP 94
G+ + P+P
Sbjct: 401 GRFARLDAAPTP 412
>gi|163733552|ref|ZP_02140995.1| DNA processing protein DprA, putative [Roseobacter litoralis Och
149]
gi|161393340|gb|EDQ17666.1| DNA processing protein DprA, putative [Roseobacter litoralis Och
149]
Length = 358
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ+ + + D+ + +I L+ P+ D +I + A
Sbjct: 275 APQLPIPAPTPRRDSPPPAKMKTKLKQAA--ALHRQILSRLSPAPVPEDQLIRDLAVTAS 332
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
LL+L++ G++ G +S +
Sbjct: 333 EAAPALLDLEMDGQITRQSGGMLSRS 358
>gi|91774545|ref|YP_544301.1| DNA processing protein DprA, putative [Methylobacillus flagellatus
KT]
gi|91708532|gb|ABE48460.1| DNA protecting protein DprA [Methylobacillus flagellatus KT]
Length = 336
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 27/69 (39%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + + ++L P+ +D + +G+ + +LL L+L G++
Sbjct: 266 PKPIPDAIDTVQPAGSVHDPLLEALGYDPVSLDTLAARSGLTTERLSAMLLVLELEGKVT 325
Query: 79 HHPEGKVSL 87
P G+
Sbjct: 326 SLPGGRFQR 334
>gi|149200840|ref|ZP_01877815.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
gi|149145173|gb|EDM33199.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
Length = 356
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + P T + +I L P+ D +I A V
Sbjct: 272 DALPQAASIATASQTELPLRPTPTLRDIAGLHAQILNRLGPSPLAEDQLIRDLATPAHRV 331
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
LL+L+L GR+ HP G ++L
Sbjct: 332 APALLDLELDGRITRHPGGLLALA 355
>gi|121596333|ref|YP_988229.1| Fis family transcriptional regulator [Acidovorax sp. JS42]
gi|120608413|gb|ABM44153.1| DNA protecting protein DprA [Acidovorax sp. JS42]
Length = 386
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + +L P+ +D ++ TG++A + + LLEL+L GR+ P G
Sbjct: 322 ASEEPLAPSYQCVLDALGFDPLGLDALVARTGLDAATLQVRLLELELEGRVARLPGGLFQ 381
Query: 87 L 87
Sbjct: 382 R 382
>gi|304391708|ref|ZP_07373650.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
gi|303295937|gb|EFL90295.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
Length = 378
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
Q +R ++++SL++ P+ IDD+I HT + A V ++LLE+DLAG + H +VSL
Sbjct: 323 QSDREKLQRSLSHAPVDIDDLIRHTDLPAGAVQMLLLEMDLAGTIERHSGNRVSLA 378
>gi|75909996|ref|YP_324292.1| SMF protein [Anabaena variabilis ATCC 29413]
gi|75703721|gb|ABA23397.1| SMF protein [Anabaena variabilis ATCC 29413]
Length = 372
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D ++ E R+ +++ + D II TG+ A V LL+L+
Sbjct: 297 PQLDVVDKSSVPEQLSLPTLSPELQRVLDTISFDALPFDLIIQQTGMNAGSVSSALLQLE 356
Query: 73 LAGRLCHHPEGKV 85
L G + P +
Sbjct: 357 LMGIVSQLPGMRY 369
>gi|294338533|emb|CAZ86862.1| Protein smf (DNA-processing chain A) [Thiomonas sp. 3As]
Length = 379
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ T P E I ++L DD+ TG A + LLEL
Sbjct: 301 RPAAKTTTADASPAAEAPPECDTE-CDILRTLGYDIRSFDDLSARTGWPADRLGARLLEL 359
Query: 72 DLAGRLCHHPEGKVSL 87
+L G++ P G+
Sbjct: 360 ELEGQVARLPGGRFQR 375
>gi|91781429|ref|YP_556635.1| SMF protein [Burkholderia xenovorans LB400]
gi|91685383|gb|ABE28583.1| DNA protecting protein DprA [Burkholderia xenovorans LB400]
Length = 421
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 35/89 (39%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P+ + S + N E R+ +L + P ++ + T +E
Sbjct: 332 VRPKPATAQTAETSAADSATAPNPAPAHRPVDPEAERLLTALGHSPTTLEILATRTEMED 391
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ LL+L+LAG++ P G+ H
Sbjct: 392 ATLQSTLLQLELAGQVTVLPGGRFMRASH 420
>gi|254699839|ref|ZP_05161667.1| SMF protein [Brucella suis bv. 5 str. 513]
gi|261750312|ref|ZP_05994021.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
gi|261740065|gb|EEY27991.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
Length = 393
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 294 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 353
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDL GRL +P +V++
Sbjct: 354 TGIETDAIQLILLELDLVGRLLRYPGNRVAI 384
>gi|296283690|ref|ZP_06861688.1| DNA processing chain A [Citromicrobium bathyomarinum JL354]
Length = 363
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+S + + E V I Q L + P+ +D++I +G + V L LLEL+
Sbjct: 288 PRSTFREPSAAFEAVPEDLAEAEPVEIAQLLTSAPVSVDELIRQSGAGSAAVQLALLELE 347
Query: 73 LAGRLCHHPEGKVSLT 88
+AGRL H GKVSL+
Sbjct: 348 IAGRLERHAGGKVSLS 363
>gi|268608877|ref|ZP_06142604.1| DNA protecting protein DprA [Ruminococcus flavefaciens FD-1]
Length = 422
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P+ + S + N + + T E T + RI L + +H D+I I++
Sbjct: 337 RPKKAKEEIPSVPEENRVADADDTDNDELTD-IQQRIVTELRDGSLHADEICRRLDIDSA 395
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
+ L EL++ G + P L
Sbjct: 396 ELMTELTELEIVGAVRSLPGKMYEL 420
>gi|296117478|ref|ZP_06836065.1| putative DNA processing chain A [Gluconacetobacter hansenii ATCC
23769]
gi|295975999|gb|EFG82790.1| putative DNA processing chain A [Gluconacetobacter hansenii ATCC
23769]
Length = 375
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCER----VRIKQSLNNVPIHIDDIIHHTGIEA 61
+ F+ D + P + +R + + L+ P +DD++
Sbjct: 284 VPPPLFTPAPDPVPRGVEMAENMPSSPRMDRHGAHAAVLELLSFAPSSVDDLVRRCQFST 343
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
V VL E++++G + V L+ P+
Sbjct: 344 ATVLTVLSEMEMSGLIDILAGDMVVLSSAPPA 375
>gi|260756634|ref|ZP_05868982.1| DNA protecting protein DprA [Brucella abortus bv. 6 str. 870]
gi|260676742|gb|EEX63563.1| DNA protecting protein DprA [Brucella abortus bv. 6 str. 870]
Length = 343
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHH 56
+ P I + I PE ER + +L VP+ +D ++ H
Sbjct: 244 LLPLIRPADPAGDEPEQPDLLTQIDEEPEQLQAITTDRERDLVIDALGPVPVDVDTLVRH 303
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
TGIE + L+LLELDLAGRL +P +V++
Sbjct: 304 TGIETDAIQLILLELDLAGRLLRYPGNRVAI 334
>gi|307292856|ref|ZP_07572702.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
gi|306880922|gb|EFN12138.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
Length = 360
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + +R + L + +D++I +G+ +V VLLEL+LA RL H GK
Sbjct: 297 EPPSSDVAERDRAAVIGLLGMAAVPVDEVIRLSGLAPAIVQTVLLELELADRLERHAGGK 356
Query: 85 VSLT 88
VS++
Sbjct: 357 VSIS 360
>gi|254488483|ref|ZP_05101688.1| DNA processing protein [Roseobacter sp. GAI101]
gi|214045352|gb|EEB85990.1| DNA processing protein [Roseobacter sp. GAI101]
Length = 347
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 29/83 (34%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ T T ++I L PI D +I A V
Sbjct: 264 ADAVQPRQAELGLPESAPAPTRSLRETAALHLQILSRLGPSPIAEDQLIRDLQASAAKVA 323
Query: 66 LVLLELDLAGRLCHHPEGKVSLT 88
VL++L+L G++ P G VS T
Sbjct: 324 PVLIDLELEGQILRQPGGLVSRT 346
>gi|317049805|ref|YP_004117453.1| DNA protecting protein DprA [Pantoea sp. At-9b]
gi|316951422|gb|ADU70897.1| DNA protecting protein DprA [Pantoea sp. At-9b]
Length = 374
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIE 60
HP + S + + + + ++ + +D + G
Sbjct: 275 HPDHILDDLHSTLNWLPATQPETIYSQDSDDVPLPFADVLANVGDEVTPVDVVAERAGQP 334
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
PV+ LLEL+LAG + P G V L
Sbjct: 335 VPVISAQLLELELAGWIAAVPGGYVRL 361
>gi|160945997|ref|ZP_02093223.1| hypothetical protein FAEPRAM212_03530 [Faecalibacterium prausnitzii
M21/2]
gi|158443728|gb|EDP20733.1| hypothetical protein FAEPRAM212_03530 [Faecalibacterium prausnitzii
M21/2]
Length = 375
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ P R+ + P+ I+++ TG+ + L++L+L GR+
Sbjct: 305 TRQASPAAAKQPAPLSDTERRVLACIGPKPVGIEELCVSTGLPMSALLGTLMKLELTGRV 364
Query: 78 CHHPEGKVSL 87
P + L
Sbjct: 365 YKQPGQRYVL 374
>gi|148265710|ref|YP_001232416.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
gi|146399210|gb|ABQ27843.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
Length = 359
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 29/81 (35%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
++ + + I L P+HIDDII + + V +
Sbjct: 279 EDILEELPQRSKVVAHADPLPSFSLTPQEAGIYTLLAESPLHIDDIIVKSELTVGDVSAI 338
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
LL L+L G + P ++T
Sbjct: 339 LLRLELKGAVMQLPGKHFAIT 359
>gi|220933380|ref|YP_002512279.1| smf protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219994690|gb|ACL71292.1| smf protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 375
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
E + ++ P+ +D ++ TG+ V +LL ++L G++ G+
Sbjct: 313 SEMDSEHQALLDAMGYDPVTVDRLVSRTGLTVAAVSSMLLIMELRGQVVSLSGGRYVR-- 370
Query: 90 HLPSP 94
H P P
Sbjct: 371 HQPEP 375
>gi|302342564|ref|YP_003807093.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
gi|301639177|gb|ADK84499.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
Length = 376
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + + + E + + P H+D +I +G++A V LL L+LA
Sbjct: 304 APSPARPRALLSQDDGLLPEERALLALVGPEPTHVDQLIRRSGLDAQSVAHHLLNLELAE 363
Query: 76 RLCHHPEGKVSLT 88
R+ + L
Sbjct: 364 RVRQLAGKRYELA 376
>gi|222832550|gb|EEE71027.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S E ++L + P+ +D+++ TG++A + LLEL+
Sbjct: 88 PLSKPVPAAAAAAAAVQSAQDHENDATLRALAHDPLSLDELMDRTGMDAAALQAHLLELE 147
Query: 73 LAGRLCHHPEGKVSLTMHL 91
L GR+ P G H
Sbjct: 148 LEGRVERLPGGLFQRLAHA 166
>gi|224369818|ref|YP_002603982.1| DprA [Desulfobacterium autotrophicum HRM2]
gi|223692535|gb|ACN15818.1| DprA [Desulfobacterium autotrophicum HRM2]
Length = 372
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP-------EYTQCERVRIKQSLNNVPIHIDDIIHHT 57
+ ++ HT+ ++ P + + I L P+HID I+ T
Sbjct: 280 ETHRDVIQELHHMVHTEPLDPLTKPRGKNENKKELTRVELAIVTILEPYPLHIDKIVEKT 339
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
++ + LL+L+L G + P S+
Sbjct: 340 DLDIASISAALLDLELKGMVRQLPGKLFSIKEE 372
>gi|158522455|ref|YP_001530325.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3]
gi|158511281|gb|ABW68248.1| DNA protecting protein DprA [Desulfococcus oleovorans Hxd3]
Length = 389
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P++ ++ + ++ P + VR+ Q+L P+HID+I +
Sbjct: 286 ISPRLAAGPATAPAASDRADENKHAGKPTPGLDTDEVRVLQTLEPYPVHIDEIAQKAAMA 345
Query: 61 APVVYLVLLELDLAGRLCHHPEGKV 85
+LL+L+L G + P +
Sbjct: 346 PGKTAGILLQLELKGFVTQEPGKRF 370
>gi|84685604|ref|ZP_01013501.1| DNA processing protein DprA, putative [Maritimibacter alkaliphilus
HTCC2654]
gi|84666270|gb|EAQ12743.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2654]
Length = 375
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 24/69 (34%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T T I L P+ D ++ + A V L +L+L G +
Sbjct: 306 PSAPAETRTLAETAALHQLILDRLGPSPVSEDQLVRDLAMPAGDVASELTDLELEGHVSR 365
Query: 80 HPEGKVSLT 88
P G +S T
Sbjct: 366 APGGLISRT 374
>gi|114763467|ref|ZP_01442874.1| DNA processing protein DprA, putative [Pelagibaca bermudensis
HTCC2601]
gi|114544005|gb|EAU47016.1| DNA processing protein DprA, putative [Roseovarius sp. HTCC2601]
Length = 375
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 4 PQIEQNFFSSQSD-TNHTKNINITHYPEYTQCE-------RVRIKQSLNNVPIHIDDIIH 55
P + +SQ T + P +I L P+ D +I
Sbjct: 283 PLEQPTASTSQQAARRRTDRAPVIPAPPPESRSLAETAQLHRQILDRLGPAPLAEDQLIR 342
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ V L +L++ GR+ P G +SL
Sbjct: 343 DLAAPSDAVAPALTDLEIDGRIRRQPGGLLSL 374
>gi|114776898|ref|ZP_01451941.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1]
gi|114552984|gb|EAU55415.1| DNA processing protein DprA [Mariprofundus ferrooxydans PV-1]
Length = 369
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
E I ++ +H+D + G+ P + +LL L+L G + P + L
Sbjct: 306 PADAEEAGILMAMRGEAVHLDLLAETCGLTLPELSPILLRLELQGVIERLPGSRYLLATE 365
Query: 91 L 91
L
Sbjct: 366 L 366
>gi|307151412|ref|YP_003886796.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822]
gi|306981640|gb|ADN13521.1| DNA protecting protein DprA [Cyanothece sp. PCC 7822]
Length = 402
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 27/81 (33%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
N + + + + Q++ P D I+ TG+ V
Sbjct: 322 PNLDTEKQKQLSIFEQTPIKAMPDLSIQLTEVLQAVGVEPTAFDLIVQKTGLCTGEVSAA 381
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
LL+L+L G + P + T
Sbjct: 382 LLQLELFGVIAQLPGMRYQRT 402
>gi|221638586|ref|YP_002524848.1| DNA protecting protein DprA [Rhodobacter sphaeroides KD131]
gi|221159367|gb|ACM00347.1| DNA protecting protein DprA [Rhodobacter sphaeroides KD131]
Length = 372
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVSL 87
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVSR 370
>gi|270308041|ref|YP_003330099.1| Rossmann fold DNA uptake nucleotide-binding protein
[Dehalococcoides sp. VS]
gi|270153933|gb|ACZ61771.1| Rossmann fold DNA uptake nucleotide-binding protein
[Dehalococcoides sp. VS]
Length = 373
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ T I L PIHID I G+ +V L ++L G++
Sbjct: 294 SAQDNTLASAPENQTESLILDKLGYEPIHIDQICRECGLGIALVSSTLAIMELRGQV-RS 352
Query: 81 PEGK 84
G
Sbjct: 353 AGGM 356
>gi|241766762|ref|ZP_04764592.1| DNA protecting protein DprA [Acidovorax delafieldii 2AN]
gi|241362868|gb|EER58607.1| DNA protecting protein DprA [Acidovorax delafieldii 2AN]
Length = 390
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 30/83 (36%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + + Q++ P+ +D ++ TG++ +
Sbjct: 304 LEELRLPGPVQASAAAPTNMAPPNAAPPPPAESPLLQAMGFDPVGLDTLMARTGMDTATM 363
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ LLEL+LAG + P G+
Sbjct: 364 QVQLLELELAGAVARLPGGRFQR 386
>gi|291619141|ref|YP_003521883.1| Smf [Pantoea ananatis LMG 20103]
gi|291154171|gb|ADD78755.1| Smf [Pantoea ananatis LMG 20103]
Length = 376
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIE 60
HP + + + + + ++ + +D + G
Sbjct: 277 HPNNIIEDLRAMLNWLPVTQSDEIYSDASDDAPLPFAELLANVGDEVTPVDVVAERAGQP 336
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
PV+ LLEL+LAG + P G V L
Sbjct: 337 VPVITAQLLELELAGWIAAVPGGYVRL 363
>gi|326319400|ref|YP_004237072.1| DNA protecting protein DprA [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323376236|gb|ADX48505.1| DNA protecting protein DprA [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 403
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S+ N + ++L P+ +D ++ TG++A + + LLEL
Sbjct: 324 SALLPAGPPGAGNDEPPGRAASGPHADVLEALGFDPMGLDALVARTGLDASRLQVALLEL 383
Query: 72 DLAGRLCHHPEGKVSL 87
+L G++ P G
Sbjct: 384 ELEGQVARLPGGLFQR 399
>gi|301632279|ref|XP_002945218.1| PREDICTED: hypothetical protein LOC100495052 [Xenopus (Silurana)
tropicalis]
Length = 729
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
Q+ + E + + ++ P+ +D +I TG++ + +
Sbjct: 647 QDVLEELRLPAPAVAVQPAVSAEAQESVE-PLLSAMGWDPVGLDALIARTGMDTATLQVA 705
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLE +LAGR+ P G
Sbjct: 706 LLEHELAGRVARLPGGSFQR 725
>gi|288941785|ref|YP_003444025.1| DNA protecting protein DprA [Allochromatium vinosum DSM 180]
gi|288897157|gb|ADC62993.1| DNA protecting protein DprA [Allochromatium vinosum DSM 180]
Length = 377
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ+ + +D + P E+ R+ +SL + P+++D++ TG+
Sbjct: 292 LAPQLRAEL--AAADRSTPGARRAAAPPPDLPPEQARLLESLGHDPVNLDELTERTGLAV 349
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ +LL ++L G + P G+ +
Sbjct: 350 EQISSMLLLMELEGHVSCLPGGRYTRA 376
>gi|149915652|ref|ZP_01904178.1| DNA processing protein DprA, putative [Roseobacter sp. AzwK-3b]
gi|149810544|gb|EDM70387.1| DNA processing protein DprA, putative [Roseobacter sp. AzwK-3b]
Length = 357
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 4 PQIEQN--FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
P ++ Q +T + RI L P+ D +I G A
Sbjct: 271 PAVQPPDKPLQHQGETRPAPPPPDRRSLQDIAALHSRILSRLGPSPLAEDQLIRDLGAPA 330
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V L +L+L GR+ P G +SL
Sbjct: 331 GQVTPALTDLELDGRIRRQPGGLLSL 356
>gi|77462726|ref|YP_352230.1| hypothetical protein RSP_2177 [Rhodobacter sphaeroides 2.4.1]
gi|77387144|gb|ABA78329.1| hypothetical protein RSP_2177 [Rhodobacter sphaeroides 2.4.1]
Length = 372
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVSL 87
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVSR 370
>gi|186474805|ref|YP_001856275.1| DNA protecting protein DprA [Burkholderia phymatum STM815]
gi|184191264|gb|ACC69229.1| DNA protecting protein DprA [Burkholderia phymatum STM815]
Length = 389
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVR-IKQSLNNVPIHIDDIIHHTGIEAP 62
PQ E S H+ +I+ + R + +L + P ++ + T ++
Sbjct: 300 PQTESVPRRCASPQTHSGDIDSRRENGPDLPDDARRLLDALGHSPTTLEILAERTDMDDT 359
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTMH 90
++ LL L+LAG LC P G+ +H
Sbjct: 360 LLQSTLLRLELAGELCALPGGRYVRAVH 387
>gi|327395470|dbj|BAK12892.1| protein Smf [Pantoea ananatis AJ13355]
Length = 374
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIE 60
HP + + + + + ++ + +D + G
Sbjct: 275 HPNNIIEDLRAMLNWLPVTQSDEIYSDASDDAPLPFAELLANVGDEVTPVDVVAERAGQP 334
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
PV+ LLEL+LAG + P G V L
Sbjct: 335 VPVITAQLLELELAGWIAAVPGGYVRL 361
>gi|253997895|ref|YP_003049958.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4]
gi|253984574|gb|ACT49431.1| DNA protecting protein DprA [Methylovorus sp. SIP3-4]
Length = 371
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E SQ ++ H PE + ++ + PI ID + +G+ + +
Sbjct: 291 EMAPLHSQQQQASQEDAFEGHDPE--ETPHTQLLACMGYDPISIDALQQSSGLTSDSLSA 348
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LL L+L ++ P G+
Sbjct: 349 MLLVLELENKVVALPGGRYQR 369
>gi|221214667|ref|ZP_03587637.1| DNA protecting protein DprA [Burkholderia multivorans CGD1]
gi|221165557|gb|EED98033.1| DNA protecting protein DprA [Burkholderia multivorans CGD1]
Length = 510
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ +L P+ + + G+ ++ LL L+LAGR+ P G+
Sbjct: 437 PACPAEQAVLTALGYGPVTYEWLAERCGLPDDTLHRALLALELAGRVAPLPGGRYGRLDG 496
Query: 91 LPSP 94
P+P
Sbjct: 497 PPNP 500
>gi|148658666|ref|YP_001278871.1| DNA protecting protein DprA [Roseiflexus sp. RS-1]
gi|148570776|gb|ABQ92921.1| DNA protecting protein DprA [Roseiflexus sp. RS-1]
Length = 360
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 22/78 (28%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
D + + + + P+HIDD+ T + V L
Sbjct: 282 ILEALDMSTAASQQEVRAALPDDPVEAAVLALVGYEPLHIDDLQRRTSMPVHEVSATLTV 341
Query: 71 LDLAGRLCHHPEGKVSLT 88
L+L G + L
Sbjct: 342 LELKGFVRQCAPMCYVLA 359
>gi|329114375|ref|ZP_08243137.1| Protein Smf [Acetobacter pomorum DM001]
gi|326696451|gb|EGE48130.1| Protein Smf [Acetobacter pomorum DM001]
Length = 412
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 7 EQNFFSSQSDTNHTKNI---NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E FF+S + + + I P Q R + L+ PI +DD+I A
Sbjct: 320 EPAFFTSPQNVDEKEPIALKPHFSAPSTAQDVRENLLSLLSFTPIAVDDLIRRCQFSASA 379
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLT 88
V + L EL+L+G + + G V L
Sbjct: 380 VLVALTELELSGCVSTYSGGMVGLA 404
>gi|332557608|ref|ZP_08411930.1| hypothetical protein RSWS8N_01115 [Rhodobacter sphaeroides WS8N]
gi|332275320|gb|EGJ20635.1| hypothetical protein RSWS8N_01115 [Rhodobacter sphaeroides WS8N]
Length = 372
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVSL 87
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVSR 370
>gi|261823199|ref|YP_003261305.1| DNA protecting protein DprA [Pectobacterium wasabiae WPP163]
gi|261607212|gb|ACX89698.1| DNA protecting protein DprA [Pectobacterium wasabiae WPP163]
Length = 373
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 30/80 (37%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ S I++ E + + ++ + +D + G P V
Sbjct: 281 EQLVSELQWLPMESGQTISNEEENGELPFADVLANVGDEVTPVDVVAERAGQPVPEVVTK 340
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V L
Sbjct: 341 LLELELAGWIAAVPGGYVRL 360
>gi|126461618|ref|YP_001042732.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17029]
gi|126103282|gb|ABN75960.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17029]
Length = 372
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 27/75 (36%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + + RI L VP+ D +I + A V L+ L+
Sbjct: 296 PAARSPEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALE 355
Query: 73 LAGRLCHHPEGKVSL 87
L GR+ P G VS
Sbjct: 356 LEGRIQRDPGGLVSR 370
>gi|217979954|ref|YP_002364101.1| DNA protecting protein DprA [Methylocella silvestris BL2]
gi|217505330|gb|ACK52739.1| DNA protecting protein DprA [Methylocella silvestris BL2]
Length = 422
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 17 TNHTKNINITHYPEYT-QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
P + + R+ L P+ +D+++ + A V +L EL+L G
Sbjct: 350 PPPADEPPREDAPAPSREAAFARVIALLGPSPVSVDELVRASEAPAREVRAILFELELQG 409
Query: 76 RLCHHPEGKVS 86
RL H VS
Sbjct: 410 RLERHGADLVS 420
>gi|222054654|ref|YP_002537016.1| DNA protecting protein DprA [Geobacter sp. FRC-32]
gi|221563943|gb|ACM19915.1| DNA protecting protein DprA [Geobacter sp. FRC-32]
Length = 359
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I L P+HIDDII + + P + +LL L+L G + P S+T
Sbjct: 301 SLTPQEAGIFTLLAESPLHIDDIIVRSELTVPDLSAILLRLELKGAVVQLPGKHFSIT 358
>gi|206558866|ref|YP_002229626.1| SMF family protein [Burkholderia cenocepacia J2315]
gi|198034903|emb|CAR50775.1| SMF family protein [Burkholderia cenocepacia J2315]
Length = 437
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + T T + +L P+ + + H+G+ V++ LL
Sbjct: 344 IAQANRTAATTAPASIEAAPPGNPSERAVLAALGYGPVTYEWLAEHSGLSDDVLHGALLA 403
Query: 71 LDLAGRLCHHPEGKVSLTMHLPSP 94
L+LAGR+ G+ + P+P
Sbjct: 404 LELAGRVASVAGGRFARLDAAPTP 427
>gi|254415891|ref|ZP_05029648.1| DNA protecting protein DprA, putative [Microcoleus chthonoplastes
PCC 7420]
gi|196177318|gb|EDX72325.1| DNA protecting protein DprA, putative [Microcoleus chthonoplastes
PCC 7420]
Length = 374
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
E ++ Q L P +D I+ TG+ V VLL+L+L G + P
Sbjct: 308 EPEPVKATPKLAPELAKVFQVLGIEPTPLDVIVQETGMTVAEVSGVLLQLELEGLVSQLP 367
Query: 82 EGKVSLT 88
Sbjct: 368 GMLYRRN 374
>gi|153869947|ref|ZP_01999450.1| DNA processing chain A [Beggiatoa sp. PS]
gi|152073589|gb|EDN70552.1| DNA processing chain A [Beggiatoa sp. PS]
Length = 420
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
I + + + +R+ L P ID+++ +G+ A + +LL L+
Sbjct: 341 PNEKMAPGNLIKTKNDLSDLEPDYIRLLGYLEAGPTSIDNLVEQSGLTAGDISSMLLILE 400
Query: 73 LAGRLCHHPEGKVSLT 88
L G + G + T
Sbjct: 401 LRGLVATQSGGLYTRT 416
>gi|241760431|ref|ZP_04758525.1| DNA protecting protein DprA [Neisseria flavescens SK114]
gi|241319100|gb|EER55593.1| DNA protecting protein DprA [Neisseria flavescens SK114]
Length = 396
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P+ +Q + P + +++ PIH D + T A
Sbjct: 310 VKPKNDQTKRLQPKTIVDEPQRPSENLPAAPLT--SALLEAMGYDPIHPDILAQQTNTAA 367
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
VY LLE +L G + P G+
Sbjct: 368 ADVYAQLLEYELDGIVAALPGGRYQR 393
>gi|89092293|ref|ZP_01165247.1| SMF protein [Oceanospirillum sp. MED92]
gi|89083381|gb|EAR62599.1| SMF protein [Oceanospirillum sp. MED92]
Length = 373
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 16 DTNHTKNINITHYPE-YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
K+ + PE E + Q + +D I +G+ + +L+EL+L
Sbjct: 301 AIAPAKDEDSASEPEYQVDSELGSLLQCMGFEICSVDQISQRSGLSVAKLSSMLVELELK 360
Query: 75 GRLCHHPEGKVS 86
G + G V
Sbjct: 361 GMISQTSSGYVR 372
>gi|227115517|ref|ZP_03829173.1| hypothetical protein PcarbP_21290 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 364
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ S I++ E + + ++ + +D + G P +
Sbjct: 272 EQLVSELQWLPMESGQTISNEEEDGELPFADVLANVGDEVTPVDVVAERAGQPVPEIVTK 331
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V L
Sbjct: 332 LLELELAGWIAAVPGGYVRL 351
>gi|319796459|ref|YP_004158099.1| DNA protecting protein dpra [Variovorax paradoxus EPS]
gi|315598922|gb|ADU39988.1| DNA protecting protein DprA [Variovorax paradoxus EPS]
Length = 383
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 29/81 (35%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ ++ + + H + +L P+ +D + TG A +
Sbjct: 300 EELPPLRTGNAASAQSSNGHAGNEAAVSEDPLLDALGFEPVSLDALSARTGWSAAALQAR 359
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
+LEL+L G + P G T
Sbjct: 360 MLELELDGHISRLPGGLFQRT 380
>gi|220931596|ref|YP_002508504.1| DNA protecting protein DprA [Halothermothrix orenii H 168]
gi|219992906|gb|ACL69509.1| DNA protecting protein DprA [Halothermothrix orenii H 168]
Length = 409
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 32/82 (39%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P E+ S + N +T E ++ L +HI+ II TG +A
Sbjct: 316 PTAEKPLIKSYNRKNTGDKSTVTEDYSSLSPEEKKVVSILQGEDLHINQIITLTGFDASQ 375
Query: 64 VYLVLLELDLAGRLCHHPEGKV 85
V +LL L+L G + K
Sbjct: 376 VNKILLNLELKGLISPKQGKKY 397
>gi|312797603|ref|YP_004030525.1| DNA processing protein [Burkholderia rhizoxinica HKI 454]
gi|312169378|emb|CBW76381.1| DNA processing protein [Burkholderia rhizoxinica HKI 454]
Length = 629
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S++ + T R +++ + P+ ++ ++ T ++ + VLLEL
Sbjct: 553 SARRRPAYLAAARSTQANHAADAARRATLEAIGHDPVTLETLVQRTHLDCATLQAVLLEL 612
Query: 72 DLAGRLCHHPEGKVSLT 88
+LAG + P G+
Sbjct: 613 ELAGTIVALPGGRFQRA 629
>gi|302877265|ref|YP_003845829.1| DNA protecting protein DprA [Gallionella capsiferriformans ES-2]
gi|302580054|gb|ADL54065.1| DNA protecting protein DprA [Gallionella capsiferriformans ES-2]
Length = 360
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + T P + + + P+ ID + +G+ + +L
Sbjct: 286 EELTGLLTPPPVQAAKPTPAP------HAVLLEQMGFDPVGIDALCLRSGLTVSQLSAML 339
Query: 69 LELDLAGRLCHHPEGKVSL 87
L L+L G + P G
Sbjct: 340 LTLELEGCIATLPGGLFQR 358
>gi|134093406|ref|YP_001098481.1| putative nucleotide-binding protein involved in DNA uptake (Smf
protein) [Herminiimonas arsenicoxydans]
gi|133737309|emb|CAL60352.1| putative DNA protecting protein DprA [Herminiimonas arsenicoxydans]
Length = 372
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 27/83 (32%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ Q+ N + +I Q+L P+ D + ++ +
Sbjct: 288 ETAQDILEELQYALPAANAASKSVAPALDAQAQQILQALGFDPVDADTLAARCQLDMATL 347
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ LL L+L+ +L P
Sbjct: 348 HAQLLMLELSNQLEILPGALYRR 370
>gi|170734477|ref|YP_001766424.1| DNA protecting protein DprA [Burkholderia cenocepacia MC0-3]
gi|169817719|gb|ACA92302.1| DNA protecting protein DprA [Burkholderia cenocepacia MC0-3]
Length = 422
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ T + +L P+ + + H+G+ V++ LL
Sbjct: 329 IAQAGGPAATTAPASIEAAPPGTPSEQAVLAALGYGPVTYEWLAEHSGLSDDVLHGALLA 388
Query: 71 LDLAGRLCHHPEGKVSLTMHLPSP 94
L+LAGR+ G+ + P+P
Sbjct: 389 LELAGRVASVAGGRFARLDAAPTP 412
>gi|163745856|ref|ZP_02153215.1| DNA processing protein DprA, putative [Oceanibulbus indolifex
HEL-45]
gi|161380601|gb|EDQ05011.1| DNA processing protein DprA, putative [Oceanibulbus indolifex
HEL-45]
Length = 349
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 29/77 (37%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S + ++ RI L PI D +I + + V LL+L
Sbjct: 272 SGPTSAPPSRATQPRENTGSIAKLHARILSRLGPAPIAEDQLIRDLQVPSTAVAPALLDL 331
Query: 72 DLAGRLCHHPEGKVSLT 88
++ G++ P G +S T
Sbjct: 332 EMDGQIERQPGGLLSRT 348
>gi|121611000|ref|YP_998807.1| DNA protecting protein DprA [Verminephrobacter eiseniae EF01-2]
gi|121555640|gb|ABM59789.1| DNA protecting protein DprA [Verminephrobacter eiseniae EF01-2]
Length = 399
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T P + +L PI ID ++ TG+ + + LLEL+LAG +
Sbjct: 328 TPPTAGADAPAAGSAMDTPLLAALGFDPIGIDALLARTGMATAALQVALLELELAGSVAR 387
Query: 80 HPEGKVSL 87
P G
Sbjct: 388 LPGGLFQR 395
>gi|154253273|ref|YP_001414097.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
gi|154157223|gb|ABS64440.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
Length = 372
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ E + R RI +L P +D+I+
Sbjct: 281 VIAALAEPLGRRFGEPDPPSYAPRDASAIAADSDARTRILSALGPTPTPLDEIVRQASAS 340
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
P+V VLLEL+LAGRL P +VSL
Sbjct: 341 VPLVRAVLLELELAGRLHRDPGDRVSL 367
>gi|17228820|ref|NP_485368.1| DNA processing protein [Nostoc sp. PCC 7120]
gi|17130672|dbj|BAB73282.1| DNA processing protein [Nostoc sp. PCC 7120]
Length = 372
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
++ E R+ +++ + D II TG+ A V LL+L+L G +
Sbjct: 305 SSVPEQLSLPTLSPELQRVLDTISFDALPFDLIIQQTGMNAGSVSSALLQLELMGIVSQL 364
Query: 81 PEGKV 85
P +
Sbjct: 365 PGMRY 369
>gi|325983535|ref|YP_004295937.1| DNA protecting protein DprA [Nitrosomonas sp. AL212]
gi|325533054|gb|ADZ27775.1| DNA protecting protein DprA [Nitrosomonas sp. AL212]
Length = 365
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T + E + L ++ID + +G+ A VV +LL L+L G++
Sbjct: 296 TPSDRKKESSPGQSTENSLLLSHLGYDTVNIDTLCARSGLTAEVVSAMLLTLELDGQISS 355
Query: 80 HPEGKVSL 87
P G
Sbjct: 356 LPGGWYQR 363
>gi|171319439|ref|ZP_02908544.1| DNA protecting protein DprA [Burkholderia ambifaria MEX-5]
gi|171095331|gb|EDT40312.1| DNA protecting protein DprA [Burkholderia ambifaria MEX-5]
Length = 425
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + +L P+ + + H+G+ V++ LL L+LAGR+
Sbjct: 340 PASASAEINDTPSDTPADRSVLAALGYGPVTYEWLAEHSGLSDDVLHRALLALELAGRVA 399
Query: 79 HHPEGKVSLTMHLPSP 94
G+ + P+P
Sbjct: 400 SVAGGRFARLDAAPTP 415
>gi|332996762|gb|EGK16387.1| DNA protecting protein DprA [Shigella flexneri K-272]
gi|333014513|gb|EGK33861.1| DNA protecting protein DprA [Shigella flexneri K-227]
Length = 374
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G AP V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPAPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|325498854|gb|EGC96713.1| DNA protecting protein DprA [Escherichia fergusonii ECD227]
Length = 374
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|91790470|ref|YP_551422.1| DNA processing protein DprA [Polaromonas sp. JS666]
gi|91699695|gb|ABE46524.1| DNA protecting protein DprA [Polaromonas sp. JS666]
Length = 374
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 31/83 (37%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ Q+ + + + + +L + +D + TG++ +
Sbjct: 288 EVAQDILEELNLPLPGAATSRHTSGQTVDDAEDPLMTALGFDAVSLDALQARTGLDTARL 347
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
LLEL+L+G++ P G
Sbjct: 348 QADLLELELSGQVTRLPGGLFQR 370
>gi|78222110|ref|YP_383857.1| SMF protein [Geobacter metallireducens GS-15]
gi|78193365|gb|ABB31132.1| DNA protecting protein DprA [Geobacter metallireducens GS-15]
Length = 358
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ L P+HID+II + + + +LL L+L G + P
Sbjct: 309 VFALLAPEPLHIDEIIAKSALTVGELSAMLLRLELKGAVTQLPGKYFC 356
>gi|225181360|ref|ZP_03734804.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
gi|225167941|gb|EEG76748.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
Length = 357
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ + + ++L P H D+I G+ AP + L+EL+LAG L
Sbjct: 289 SEQETAATKAVQLSDTQASVLETLQYEPAHFDEIADRCGLPAPQLAATLVELELAGLLRK 348
Query: 80 HPEGKV 85
P
Sbjct: 349 LPGNFF 354
>gi|15803813|ref|NP_289847.1| DNA protecting protein DprA [Escherichia coli O157:H7 EDL933]
gi|12517912|gb|AAG58407.1|AE005555_7 hypothetical protein Z4656 [Escherichia coli O157:H7 str. EDL933]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPBAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|56477102|ref|YP_158691.1| SMF protein, Rossmann fold nucleotide-binding protein involved in
DNA uptake [Aromatoleum aromaticum EbN1]
gi|56313145|emb|CAI07790.1| SMF protein, Rossmann fold nucleotide-binding protein involved in
DNA uptake [Aromatoleum aromaticum EbN1]
Length = 390
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 31/85 (36%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P ++ P E +R+ +L + + ID + +G+
Sbjct: 305 APGRPARPARTRETRPADPPFEPRTPPPAASAEEIRVLDTLGHEALDIDTLTARSGLTLD 364
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
+Y +LL L+L G + P G+
Sbjct: 365 ALYAILLALELEGHVTRLPGGRFQR 389
>gi|67458923|ref|YP_246547.1| putative DNA processing protein DprA [Rickettsia felis URRWXCal2]
gi|67004456|gb|AAY61382.1| Putatie DNA processing protein DprA [Rickettsia felis URRWXCal2]
Length = 382
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+N + E +Q ER I + L++VPI + + T + P++Y V+LEL+LAG+ H
Sbjct: 315 VNTRYVKEPSQKERTAILELLSSVPIDFEFLQKETELSLPIIYTVILELELAGKAIRHAG 374
Query: 83 GKVSL 87
K+SL
Sbjct: 375 NKISL 379
>gi|83748635|ref|ZP_00945653.1| Smf protein [Ralstonia solanacearum UW551]
gi|207741947|ref|YP_002258339.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum IPO1609]
gi|83724679|gb|EAP71839.1| Smf protein [Ralstonia solanacearum UW551]
gi|206593333|emb|CAQ60260.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum IPO1609]
Length = 403
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + +L P+ +D + TG A + LL L+L GR+ P G+
Sbjct: 349 EETALLDALGFDPVDLDTLCQRTGQTAAPLSAQLLTLELEGRIERQPGGRF 399
>gi|218550561|ref|YP_002384352.1| DNA protecting protein DprA [Escherichia fergusonii ATCC 35469]
gi|218358102|emb|CAQ90749.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
gi|323966247|gb|EGB61682.1| DNA protecting protein DprA [Escherichia coli M863]
gi|323974762|gb|EGB69875.1| DNA protecting protein DprA [Escherichia coli TW10509]
gi|324111964|gb|EGC05943.1| DNA protecting protein DprA [Escherichia fergusonii B253]
gi|327250934|gb|EGE62627.1| DNA protecting protein DprA [Escherichia coli STEC_7v]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|157148860|ref|YP_001456179.1| DNA protecting protein DprA [Citrobacter koseri ATCC BAA-895]
gi|157086065|gb|ABV15743.1| hypothetical protein CKO_04698 [Citrobacter koseri ATCC BAA-895]
Length = 364
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ + + P + ++ + +D + G P V LL
Sbjct: 280 LPDEAENSLYSPDQEVAALPFPM------LLANVGDEVTPVDVVAERAGQPVPEVVAQLL 333
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 334 ELELAGWIAAVPGGYVRL 351
>gi|326625150|gb|EGE31495.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 391
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 307 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 360
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 361 ELELAGWIAAVPGGYVRL 378
>gi|313199960|ref|YP_004038618.1| DNA protecting protein dpra [Methylovorus sp. MP688]
gi|312439276|gb|ADQ83382.1| DNA protecting protein DprA [Methylovorus sp. MP688]
Length = 371
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E SQ ++ H PE + ++ + PI ID + +G+ + +
Sbjct: 291 EMAPLHSQQQQASQEDAFAGHDPE--ETPHTQLLTCMGYDPISIDALQQSSGLTSDSLSA 348
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LL L+L ++ P G+
Sbjct: 349 MLLVLELENKVAALPGGRYQR 369
>gi|331674793|ref|ZP_08375550.1| protein smf [Escherichia coli TA280]
gi|331067702|gb|EGI39100.1| protein smf [Escherichia coli TA280]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|261380552|ref|ZP_05985125.1| DNA processing protein DprA [Neisseria subflava NJ9703]
gi|284796520|gb|EFC51867.1| DNA processing protein DprA [Neisseria subflava NJ9703]
Length = 396
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ T + +++ PIH D + T A VY LLE +L G
Sbjct: 326 ADEPQRPSENLSAAPSTSA----LLEAMGYDPIHPDILAQQTNTAAADVYAQLLEYELDG 381
Query: 76 RLCHHPEGKVSL 87
+ P G+
Sbjct: 382 IVAALPGGRYQR 393
>gi|261368262|ref|ZP_05981145.1| DNA protecting protein DprA [Subdoligranulum variabile DSM 15176]
gi|282569777|gb|EFB75312.1| DNA protecting protein DprA [Subdoligranulum variabile DSM 15176]
Length = 366
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 20/71 (28%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+ P + + L ID + TG+ A V EL+L
Sbjct: 293 LAAGAEEKEPAEFSPASVSADARAVYAKLGPTAQGIDALCAATGLPANRVLAACTELELF 352
Query: 75 GRLCHHPEGKV 85
G P +
Sbjct: 353 GGAQAQPGRRY 363
>gi|162145885|ref|YP_001600343.1| DNA processing chain A [Gluconacetobacter diazotrophicus PAl 5]
gi|161784459|emb|CAP53989.1| putative DNA processing chain A [Gluconacetobacter diazotrophicus
PAl 5]
Length = 395
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQC-------ERVRIKQSLNNVPIHIDDIIH 55
P+ Q P R I L+ P +DD++
Sbjct: 292 QPESRQPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVR 351
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ VL EL+LAG + P G V L
Sbjct: 352 RCQFSTSAILTVLSELELAGNIETLPGGSVVLPSQPDE 389
>gi|323131763|gb|ADX19193.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
Length = 391
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 307 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 360
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 361 ELELAGWIAAVPGGYVRL 378
>gi|125972980|ref|YP_001036890.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405]
gi|256004777|ref|ZP_05429752.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360]
gi|281417191|ref|ZP_06248211.1| DNA protecting protein DprA [Clostridium thermocellum JW20]
gi|125713205|gb|ABN51697.1| DNA protecting protein DprA [Clostridium thermocellum ATCC 27405]
gi|255991227|gb|EEU01334.1| DNA protecting protein DprA [Clostridium thermocellum DSM 2360]
gi|281408593|gb|EFB38851.1| DNA protecting protein DprA [Clostridium thermocellum JW20]
gi|316940784|gb|ADU74818.1| DNA protecting protein DprA [Clostridium thermocellum DSM 1313]
Length = 370
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ ++ + L +HID+I TG +V +L+ L+L G + P L +
Sbjct: 313 LDNDEKKVVECLKLESMHIDNIARKTGFGIQLVNSILVMLELKGVVEQLPGKIFKLKL 370
>gi|207727556|ref|YP_002255950.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum MolK2]
gi|206590793|emb|CAQ56405.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum MolK2]
Length = 403
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + +L P+ +D + TG A + LL L+L GR+ P G+
Sbjct: 349 EETALLDALGFDPVDLDTLCQRTGQTAAPLSAQLLTLELEGRIERQPGGRF 399
>gi|50122918|ref|YP_052085.1| DNA protecting protein DprA [Pectobacterium atrosepticum SCRI1043]
gi|49613444|emb|CAG76895.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 373
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ S I++ E + + ++ + +D + G P + +
Sbjct: 281 EQLVSELQWLPTESGQTISNEEEDGELPFADVLANVGDEVTPVDVVAERAGQPVPEIVIK 340
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V L
Sbjct: 341 LLELELAGWIAAVPGGYVRL 360
>gi|323154123|gb|EFZ40326.1| DNA protecting protein DprA [Escherichia coli EPECa14]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGYEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|82545648|ref|YP_409595.1| DNA protecting protein DprA [Shigella boydii Sb227]
gi|81247059|gb|ABB67767.1| Predicted Rossmann-fold nucleotide-binding protein involved in DNA
uptake [Shigella boydii Sb227]
gi|320187007|gb|EFW61719.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Shigella flexneri CDC 796-83]
gi|332090239|gb|EGI95337.1| DNA protecting protein DprA [Shigella boydii 3594-74]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|209543807|ref|YP_002276036.1| DNA protecting protein DprA [Gluconacetobacter diazotrophicus PAl
5]
gi|209531484|gb|ACI51421.1| DNA protecting protein DprA [Gluconacetobacter diazotrophicus PAl
5]
Length = 395
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQC-------ERVRIKQSLNNVPIHIDDIIH 55
P+ Q P R I L+ P +DD++
Sbjct: 292 QPESRQPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVR 351
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ VL EL+LAG + P G V L
Sbjct: 352 RCQFSTSAILTVLSELELAGNIETLPGGSVVLPSQPDE 389
>gi|253690149|ref|YP_003019339.1| DNA protecting protein DprA [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756727|gb|ACT14803.1| DNA protecting protein DprA [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 373
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ S I++ E + + ++ + +D + G P +
Sbjct: 281 EQLVSELQWLPMESGQTISNEEEDGELPFADVLANVGDEVTPVDVVAERAGQPVPEIVTK 340
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V L
Sbjct: 341 LLELELAGWIAAVPGGYVRL 360
>gi|161616431|ref|YP_001590396.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|161365795|gb|ABX69563.1| hypothetical protein SPAB_04246 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|300022164|ref|YP_003754775.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
gi|299523985|gb|ADJ22454.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
Length = 399
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ ++ + + + +L+ PI +D I TG+ V + LLEL
Sbjct: 321 TPRTSPHPISPTVAVRRKPDGLADISAVLAALSPAPIAVDAIARGTGLAIQSVQIALLEL 380
Query: 72 DLAGRLCHHPEGKVSL 87
DLAGR+ H VSL
Sbjct: 381 DLAGRIERHGLSLVSL 396
>gi|168468038|ref|ZP_02701875.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195628896|gb|EDX48306.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|332998315|gb|EGK17915.1| DNA protecting protein DprA [Shigella flexneri K-218]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|332998299|gb|EGK17900.1| DNA protecting protein DprA [Shigella flexneri VA-6]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|30064607|ref|NP_838778.1| DNA protecting protein DprA [Shigella flexneri 2a str. 2457T]
gi|56480309|ref|NP_709073.2| DNA protecting protein DprA [Shigella flexneri 2a str. 301]
gi|110807133|ref|YP_690653.1| DNA protecting protein DprA [Shigella flexneri 5 str. 8401]
gi|30042866|gb|AAP18589.1| hypothetical protein S3542 [Shigella flexneri 2a str. 2457T]
gi|56383860|gb|AAN44780.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|110616681|gb|ABF05348.1| hypothetical protein SFV_3305 [Shigella flexneri 5 str. 8401]
gi|281602654|gb|ADA75638.1| putative Rossmann fold nucleotide-binding protein involved in DNA
uptake [Shigella flexneri 2002017]
gi|313648792|gb|EFS13232.1| DNA protecting protein DprA [Shigella flexneri 2a str. 2457T]
gi|332749606|gb|EGJ80023.1| DNA protecting protein DprA [Shigella flexneri K-671]
gi|332754008|gb|EGJ84381.1| DNA protecting protein DprA [Shigella flexneri 2747-71]
gi|332766531|gb|EGJ96738.1| DNA protecting protein DprA [Shigella flexneri 2930-71]
gi|333012292|gb|EGK31673.1| DNA protecting protein DprA [Shigella flexneri K-304]
Length = 374
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|121602381|ref|YP_989130.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
gi|120614558|gb|ABM45159.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
Length = 396
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E+++ NH+ T P ER I +L+ PI +D + H+G+ +YL
Sbjct: 304 EESYPIQLQQENHSLPKPSTKAPFADDTERAAILSALSTTPIDLDTLSSHSGVPLQNLYL 363
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
+L+ELDLAG+L H G VSL+ P PQ
Sbjct: 364 LLIELDLAGKLTRHSGGYVSLSTENP-PQ 391
>gi|163859049|ref|YP_001633347.1| hypothetical protein Bpet4728 [Bordetella petrii DSM 12804]
gi|163262777|emb|CAP45080.1| conserved hypothetical protein [Bordetella petrii]
Length = 371
Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ Q+ + Q + + ++L + P+H+D + TG++ +
Sbjct: 288 ETAQDITDELGGGAPVASRETPSARAAAQPD-TPLLRALGHDPLHLDALQARTGLDVATL 346
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
LLEL+LAGR+ G+
Sbjct: 347 NAQLLELELAGRVARLDGGRFQR 369
>gi|213855561|ref|ZP_03383801.1| hypothetical protein SentesT_16550 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 375
Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 291 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 344
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 345 ELELAGWIAAVPGGYVRL 362
>gi|320655924|gb|EFX23844.1| hypothetical protein ECO7815_20646 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|320182717|gb|EFW57603.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Shigella boydii ATCC 9905]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|116691146|ref|YP_836769.1| DNA protecting protein DprA [Burkholderia cenocepacia HI2424]
gi|116649235|gb|ABK09876.1| DNA protecting protein DprA [Burkholderia cenocepacia HI2424]
Length = 475
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + T T + +L P+ + + H+G+ V++ LL
Sbjct: 382 IAQTNRTAATTAPASIEAAPPGTPSEQAVLTALGYGPVTYEWLAEHSGLSNDVLHGALLA 441
Query: 71 LDLAGRLCHHPEGKVSLTMHLPSP 94
L+LAGR+ G+ + P+P
Sbjct: 442 LELAGRVASVAGGRFARLDAAPTP 465
>gi|331654878|ref|ZP_08355877.1| protein smf [Escherichia coli M718]
gi|331046893|gb|EGI18971.1| protein smf [Escherichia coli M718]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|254880958|ref|ZP_05253668.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319639966|ref|ZP_07994693.1| DNA processing Smf-like protein [Bacteroides sp. 3_1_40A]
gi|254833751|gb|EET14060.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317388244|gb|EFV69096.1| DNA processing Smf-like protein [Bacteroides sp. 3_1_40A]
Length = 371
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP--EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIE 60
++ + + K E RI + L + I+ ++ T I
Sbjct: 283 TSAEDLVKAMGWESSPKTEKTVQRELFPDLSEEEERIVKRLGKMPEGLQINTLVIDTNIP 342
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ +L EL++ G + G L M
Sbjct: 343 VNRMSALLFELEMKGVIRALAGGVYRLIM 371
>gi|256025987|ref|ZP_05439852.1| DNA protecting protein DprA [Escherichia sp. 4_1_40B]
gi|301643895|ref|ZP_07243925.1| DNA protecting protein DprA [Escherichia coli MS 146-1]
gi|307139968|ref|ZP_07499324.1| DNA protecting protein DprA [Escherichia coli H736]
gi|331643981|ref|ZP_08345110.1| protein smf [Escherichia coli H736]
gi|301077738|gb|EFK92544.1| DNA protecting protein DprA [Escherichia coli MS 146-1]
gi|315617088|gb|EFU97698.1| DNA protecting protein DprA [Escherichia coli 3431]
gi|331036275|gb|EGI08501.1| protein smf [Escherichia coli H736]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|168234462|ref|ZP_02659520.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194468594|ref|ZP_03074578.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194454958|gb|EDX43797.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205331618|gb|EDZ18382.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|160896284|ref|YP_001561866.1| DNA protecting protein DprA [Delftia acidovorans SPH-1]
gi|160361868|gb|ABX33481.1| DNA protecting protein DprA [Delftia acidovorans SPH-1]
Length = 405
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ E ++L + P+ +D+++ TG++A + LLEL+
Sbjct: 327 PIAKPVPAAAAAAAAVQSAQDHENDATLRALAHDPLSLDELMDRTGMDAAALQAHLLELE 386
Query: 73 LAGRLCHHPEGKVSL 87
L GR+ P G
Sbjct: 387 LEGRVERLPGGLFQR 401
>gi|57234466|ref|YP_181459.1| DNA processing protein DprA, putative [Dehalococcoides ethenogenes
195]
gi|57224914|gb|AAW39971.1| DNA processing protein DprA, putative [Dehalococcoides ethenogenes
195]
Length = 406
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ T I L PIHID + G+ +V L ++L G++
Sbjct: 329 PDNTTKAVPENQTESLILDKLGYEPIHIDQLCRECGLGIALVSSTLAIMELRGQV-RSAG 387
Query: 83 GK 84
G
Sbjct: 388 GM 389
>gi|291284644|ref|YP_003501462.1| hypothetical protein G2583_4004 [Escherichia coli O55:H7 str.
CB9615]
gi|209757374|gb|ACI76999.1| hypothetical protein ECs4151 [Escherichia coli]
gi|290764517|gb|ADD58478.1| hypothetical protein G2583_4004 [Escherichia coli O55:H7 str.
CB9615]
gi|320661376|gb|EFX28791.1| hypothetical protein ECO5905_01202 [Escherichia coli O55:H7 str.
USDA 5905]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|194435063|ref|ZP_03067301.1| DNA protecting protein DprA [Shigella dysenteriae 1012]
gi|194416670|gb|EDX32801.1| DNA protecting protein DprA [Shigella dysenteriae 1012]
gi|332086255|gb|EGI91411.1| DNA protecting protein DprA [Shigella dysenteriae 155-74]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|218706893|ref|YP_002414412.1| DNA protecting protein DprA [Escherichia coli UMN026]
gi|293406883|ref|ZP_06650807.1| hypothetical protein ECGG_03573 [Escherichia coli FVEC1412]
gi|298382624|ref|ZP_06992219.1| DNA processing protein [Escherichia coli FVEC1302]
gi|300896633|ref|ZP_07115150.1| DNA protecting protein DprA [Escherichia coli MS 198-1]
gi|301018857|ref|ZP_07183096.1| DNA protecting protein DprA [Escherichia coli MS 69-1]
gi|331664898|ref|ZP_08365799.1| protein smf [Escherichia coli TA143]
gi|218433990|emb|CAR14907.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|291425694|gb|EFE98728.1| hypothetical protein ECGG_03573 [Escherichia coli FVEC1412]
gi|298276460|gb|EFI17978.1| DNA processing protein [Escherichia coli FVEC1302]
gi|300359510|gb|EFJ75380.1| DNA protecting protein DprA [Escherichia coli MS 198-1]
gi|300399514|gb|EFJ83052.1| DNA protecting protein DprA [Escherichia coli MS 69-1]
gi|331057408|gb|EGI29394.1| protein smf [Escherichia coli TA143]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|187922315|ref|YP_001893957.1| DNA protecting protein DprA [Burkholderia phytofirmans PsJN]
gi|187713509|gb|ACD14733.1| DNA protecting protein DprA [Burkholderia phytofirmans PsJN]
Length = 422
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + + E R+ +L + P ++ + T +E + LL+L
Sbjct: 343 EASPAVSAEAPLAAATPCPPANPEAQRLLAALGHSPTTLEILATRTEMEDADLQTALLQL 402
Query: 72 DLAGRLCHHPEGKVSLTMH 90
+LAG + P G+ H
Sbjct: 403 ELAGHVTMLPGGRFMRASH 421
>gi|283835703|ref|ZP_06355444.1| hypothetical protein CIT292_10095 [Citrobacter youngae ATCC 29220]
gi|291068382|gb|EFE06491.1| DNA protecting protein DprA [Citrobacter youngae ATCC 29220]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDEPEKSIYSPDHEEVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|188492261|ref|ZP_02999531.1| DNA protecting protein DprA [Escherichia coli 53638]
gi|188487460|gb|EDU62563.1| DNA protecting protein DprA [Escherichia coli 53638]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|326403290|ref|YP_004283371.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
gi|325050151|dbj|BAJ80489.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
Length = 373
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + R I + L+ P+ +D++ H
Sbjct: 287 LFPDARIAAPPPGLGEPPDAAPETG---DELDRARSEIPRLLSASPVSVDELARHCQFST 343
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ VL EL+LAGR+ P +V L
Sbjct: 344 SALTAVLTELELAGRIETLPGNRVCLLSE 372
>gi|148259743|ref|YP_001233870.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
gi|146401424|gb|ABQ29951.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
Length = 373
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + R I + L+ P+ +D++ H
Sbjct: 287 LFPDARIAAPPPGLGEPPDAAPETG---DELDRARSEIPRLLSASPVSVDELARHCQFST 343
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ VL EL+LAGR+ P +V L
Sbjct: 344 SALTAVLTELELAGRIETLPGNRVCLLSE 372
>gi|126725956|ref|ZP_01741798.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
gi|126705160|gb|EBA04251.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
Length = 390
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNIN--ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P +Q N K T +P + + I L+ PI D +I +
Sbjct: 302 QPLSKQIESHETLSGNPIKETEYKPTVHPHQQKDVQSHIMALLSINPIAEDQLIRDLDLP 361
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
+ V LL+L+L G + G +S
Sbjct: 362 SATVSAKLLDLELEGAIMRQSGGLLSR 388
>gi|254246862|ref|ZP_04940183.1| SMF protein [Burkholderia cenocepacia PC184]
gi|124871638|gb|EAY63354.1| SMF protein [Burkholderia cenocepacia PC184]
Length = 475
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ T + +L P+ + + H+G+ V++ LL
Sbjct: 382 IAQAGRPAATTAPASIEAAPPGTPSEQAVLTALGYGPVTYEWLAEHSGLSDDVLHGALLA 441
Query: 71 LDLAGRLCHHPEGKVSLTMHLPSP 94
L+LAGR+ G+ + P+P
Sbjct: 442 LELAGRVASVAGGRFARLDAAPTP 465
>gi|163742204|ref|ZP_02149592.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
2.10]
gi|161384534|gb|EDQ08915.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
2.10]
Length = 355
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 28/93 (30%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P +S T T RI L P D ++ I +
Sbjct: 254 RPVPPPEAAASARLTELPPPPKEQRSLSDTAALHQRILDRLGPAPTAEDQLVRDLAIPSR 313
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
+ L +L+L+G + G + L PQ
Sbjct: 314 DLAPALTDLELSGAVARAAGGLLILGDFDREPQ 346
>gi|82778583|ref|YP_404932.1| DNA protecting protein DprA [Shigella dysenteriae Sd197]
gi|309785608|ref|ZP_07680239.1| DNA protecting protein DprA [Shigella dysenteriae 1617]
gi|81242731|gb|ABB63441.1| predicted Rossmann-fold nucleotide-binding protein [Shigella
dysenteriae Sd197]
gi|308926728|gb|EFP72204.1| DNA protecting protein DprA [Shigella dysenteriae 1617]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|107024059|ref|YP_622386.1| DNA processing protein DprA [Burkholderia cenocepacia AU 1054]
gi|105894248|gb|ABF77413.1| DNA protecting protein DprA [Burkholderia cenocepacia AU 1054]
Length = 475
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + T T + +L P+ + + H+G+ V++ LL
Sbjct: 382 IAQTNRTAATTAPASIEAAPPGTPSEQAVLTALGYGPVTYEWLAEHSGLSNDVLHGALLA 441
Query: 71 LDLAGRLCHHPEGKVSLTMHLPSP 94
L+LAGR+ G+ + P+P
Sbjct: 442 LELAGRVASVAGGRFARLDAAPTP 465
>gi|332085432|gb|EGI90598.1| DNA protecting protein DprA [Shigella boydii 5216-82]
Length = 364
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 280 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 333
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 334 ELELAGWIAAVPGGYVRL 351
>gi|209920751|ref|YP_002294835.1| DNA protecting protein DprA [Escherichia coli SE11]
gi|209914010|dbj|BAG79084.1| conserved hypothetical protein [Escherichia coli SE11]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|293416704|ref|ZP_06659341.1| DNA processing protein [Escherichia coli B185]
gi|291431280|gb|EFF04265.1| DNA processing protein [Escherichia coli B185]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|109896357|ref|YP_659612.1| DNA protecting protein DprA [Pseudoalteromonas atlantica T6c]
gi|109698638|gb|ABG38558.1| DNA protecting protein DprA [Pseudoalteromonas atlantica T6c]
Length = 379
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ S++ +D ++ G+ V LLE +L G + P G + L
Sbjct: 326 DKLLDSVDFETTPLDIVVERCGMPVAEVMSQLLEYELRGLVAAVPGGYLKL 376
>gi|170769588|ref|ZP_02904041.1| DNA protecting protein DprA [Escherichia albertii TW07627]
gi|170121645|gb|EDS90576.1| DNA protecting protein DprA [Escherichia albertii TW07627]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPGAPEKSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|254511723|ref|ZP_05123790.1| DNA protecting protein DprA [Rhodobacteraceae bacterium KLH11]
gi|221535434|gb|EEE38422.1| DNA protecting protein DprA [Rhodobacteraceae bacterium KLH11]
Length = 351
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 29/84 (34%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ S + + I L PI D +I A V
Sbjct: 267 ALPPISPKSVEQPPLPFATDTSKAKIPPNTLHQAILTRLGPSPIAEDQLIRDISASAGEV 326
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
VL++L+L G++ P G +SL+
Sbjct: 327 GPVLVDLELDGKILRQPGGLLSLS 350
>gi|221201857|ref|ZP_03574894.1| DNA protecting protein DprA [Burkholderia multivorans CGD2M]
gi|221207637|ref|ZP_03580645.1| DNA protecting protein DprA [Burkholderia multivorans CGD2]
gi|221172483|gb|EEE04922.1| DNA protecting protein DprA [Burkholderia multivorans CGD2]
gi|221178277|gb|EEE10687.1| DNA protecting protein DprA [Burkholderia multivorans CGD2M]
Length = 478
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ +L P+ + + G+ ++ LL L+LAGR+ P G+
Sbjct: 405 PACPAEQAVLTALGYGPVTYEWLAERCGLPDDALHRALLALELAGRVAPLPGGRYGRLDG 464
Query: 91 LPSP 94
P+P
Sbjct: 465 PPNP 468
>gi|15833405|ref|NP_312178.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. Sakai]
gi|168786175|ref|ZP_02811182.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC869]
gi|217325833|ref|ZP_03441917.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. TW14588]
gi|261224590|ref|ZP_05938871.1| DNA protecting protein DprA [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254516|ref|ZP_05947049.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. FRIK966]
gi|13363624|dbj|BAB37574.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|189373826|gb|EDU92242.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC869]
gi|209757368|gb|ACI76996.1| hypothetical protein ECs4151 [Escherichia coli]
gi|209757370|gb|ACI76997.1| hypothetical protein ECs4151 [Escherichia coli]
gi|217322054|gb|EEC30478.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. TW14588]
gi|320639590|gb|EFX09184.1| hypothetical protein ECO5101_01180 [Escherichia coli O157:H7 str.
G5101]
gi|320645088|gb|EFX14104.1| hypothetical protein ECO9389_00924 [Escherichia coli O157:H- str.
493-89]
gi|320650399|gb|EFX18865.1| hypothetical protein ECO2687_03814 [Escherichia coli O157:H- str. H
2687]
gi|320666398|gb|EFX33381.1| hypothetical protein ECOSU61_15290 [Escherichia coli O157:H7 str.
LSU-61]
gi|326342534|gb|EGD66308.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Escherichia coli O157:H7 str. 1044]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|332830027|gb|EGK02655.1| hypothetical protein HMPREF9455_00905 [Dysgonomonas gadei ATCC
BAA-286]
Length = 373
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E I L +HID + I A ++ LLEL++ G + + P +L
Sbjct: 316 LTDEEKIITDKLGTIDSLHIDQLARELNIPAYQLFTTLLELEMKGLIKNLPGNMYALA 373
>gi|187731689|ref|YP_001881969.1| DNA protecting protein DprA [Shigella boydii CDC 3083-94]
gi|187428681|gb|ACD07955.1| DNA protecting protein DprA [Shigella boydii CDC 3083-94]
gi|320173930|gb|EFW49106.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Shigella dysenteriae CDC 74-1112]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|300903534|ref|ZP_07121456.1| DNA protecting protein DprA [Escherichia coli MS 84-1]
gi|301305495|ref|ZP_07211587.1| DNA protecting protein DprA [Escherichia coli MS 124-1]
gi|300404407|gb|EFJ87945.1| DNA protecting protein DprA [Escherichia coli MS 84-1]
gi|300839190|gb|EFK66950.1| DNA protecting protein DprA [Escherichia coli MS 124-1]
gi|315255869|gb|EFU35837.1| DNA protecting protein DprA [Escherichia coli MS 85-1]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|297183540|gb|ADI19669.1| predicted rossmann fold nucleotide-binding protein involved in DNA
uptake [uncultured Alteromonadales bacterium
HF4000_16C08]
Length = 373
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + Q + K NI+ E ++ S++ ID I + L
Sbjct: 292 DEIAVQPYADLGKGNNISEKSEVNNLATDKLLDSVDYDITAIDVIAQRCSMPVQQAMAEL 351
Query: 69 LELDLAGRLCHHPEGKVSL 87
LE +L G + P G V L
Sbjct: 352 LEYELRGLVAAIPGGYVKL 370
>gi|284923292|emb|CBG36386.1| conserved hypothetical protein [Escherichia coli 042]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|471305|emb|CAA54827.1| orf374 [Escherichia coli]
Length = 374
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|332304411|ref|YP_004432262.1| DNA protecting protein DprA [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332171740|gb|AEE20994.1| DNA protecting protein DprA [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 379
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ S++ +D ++ G+ V LLE +L G + P G + L
Sbjct: 326 DKLLDSVDFETTPLDIVVERCGMPVAEVMSQLLEYELRGLVTAVPGGYLKL 376
>gi|224826192|ref|ZP_03699295.1| DNA protecting protein DprA [Lutiella nitroferrum 2002]
gi|224601829|gb|EEG08009.1| DNA protecting protein DprA [Lutiella nitroferrum 2002]
Length = 366
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ L P+ +D + + A VY +LLEL+L GR+ P G+
Sbjct: 312 AETPLLVQLGYDPVDVDSLAARLELTAGEVYAMLLELELEGRVASLPGGRFQR 364
>gi|49176336|ref|YP_026211.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|89110725|ref|AP_004505.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|157162759|ref|YP_001460077.1| DNA protecting protein DprA [Escherichia coli HS]
gi|170018479|ref|YP_001723433.1| DNA protecting protein DprA [Escherichia coli ATCC 8739]
gi|170082806|ref|YP_001732126.1| hypothetical protein ECDH10B_3460 [Escherichia coli str. K-12
substr. DH10B]
gi|194440009|ref|ZP_03072067.1| DNA protecting protein DprA [Escherichia coli 101-1]
gi|238902376|ref|YP_002928172.1| hypothetical protein BWG_2976 [Escherichia coli BW2952]
gi|253771891|ref|YP_003034722.1| DNA protecting protein DprA [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254038446|ref|ZP_04872502.1| DNA protecting protein DprA [Escherichia sp. 1_1_43]
gi|254163213|ref|YP_003046321.1| DNA protecting protein DprA [Escherichia coli B str. REL606]
gi|297517903|ref|ZP_06936289.1| DNA protecting protein DprA [Escherichia coli OP50]
gi|300932178|ref|ZP_07147458.1| DNA protecting protein DprA [Escherichia coli MS 187-1]
gi|300946507|ref|ZP_07160773.1| DNA protecting protein DprA [Escherichia coli MS 116-1]
gi|300955323|ref|ZP_07167705.1| DNA protecting protein DprA [Escherichia coli MS 175-1]
gi|301021205|ref|ZP_07185239.1| DNA protecting protein DprA [Escherichia coli MS 196-1]
gi|312972453|ref|ZP_07786627.1| DNA protecting protein DprA [Escherichia coli 1827-70]
gi|401096|sp|P30852|SMF_ECOLI RecName: Full=Protein smf
gi|49087|emb|CAA46763.1| smf [Escherichia coli K-12]
gi|443988|emb|CAA54366.1| smf [Escherichia coli K-12]
gi|48994932|gb|AAT48176.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|85676756|dbj|BAE78006.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
W3110]
gi|157068439|gb|ABV07694.1| DNA protecting protein DprA [Escherichia coli HS]
gi|169753407|gb|ACA76106.1| DNA protecting protein DprA [Escherichia coli ATCC 8739]
gi|169890641|gb|ACB04348.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
gi|194421061|gb|EDX37090.1| DNA protecting protein DprA [Escherichia coli 101-1]
gi|226838952|gb|EEH70975.1| DNA protecting protein DprA [Escherichia sp. 1_1_43]
gi|238860422|gb|ACR62420.1| conserved protein [Escherichia coli BW2952]
gi|242378812|emb|CAQ33604.1| conserved protein [Escherichia coli BL21(DE3)]
gi|253322935|gb|ACT27537.1| DNA protecting protein DprA [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975114|gb|ACT40785.1| hypothetical protein ECB_03136 [Escherichia coli B str. REL606]
gi|253979270|gb|ACT44940.1| hypothetical protein ECD_03136 [Escherichia coli BL21(DE3)]
gi|260447696|gb|ACX38118.1| DNA protecting protein DprA [Escherichia coli DH1]
gi|299881613|gb|EFI89824.1| DNA protecting protein DprA [Escherichia coli MS 196-1]
gi|300317767|gb|EFJ67551.1| DNA protecting protein DprA [Escherichia coli MS 175-1]
gi|300453813|gb|EFK17433.1| DNA protecting protein DprA [Escherichia coli MS 116-1]
gi|300460062|gb|EFK23555.1| DNA protecting protein DprA [Escherichia coli MS 187-1]
gi|310334830|gb|EFQ01035.1| DNA protecting protein DprA [Escherichia coli 1827-70]
gi|315137861|dbj|BAJ45020.1| DNA protecting protein DprA [Escherichia coli DH1]
gi|323934516|gb|EGB30924.1| DNA protecting protein DprA [Escherichia coli E1520]
gi|323939293|gb|EGB35505.1| DNA protecting protein DprA [Escherichia coli E482]
gi|323959564|gb|EGB55217.1| DNA protecting protein DprA [Escherichia coli H489]
gi|323970089|gb|EGB65363.1| DNA protecting protein DprA [Escherichia coli TA007]
gi|332345233|gb|AEE58567.1| DNA protecting protein DprA [Escherichia coli UMNK88]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|170681650|ref|YP_001745548.1| DNA protecting protein DprA [Escherichia coli SMS-3-5]
gi|215488585|ref|YP_002331016.1| DNA protecting protein DprA [Escherichia coli O127:H6 str.
E2348/69]
gi|300935283|ref|ZP_07150294.1| DNA protecting protein DprA [Escherichia coli MS 21-1]
gi|312968389|ref|ZP_07782599.1| DNA protecting protein DprA [Escherichia coli 2362-75]
gi|170519368|gb|ACB17546.1| DNA protecting protein DprA [Escherichia coli SMS-3-5]
gi|215266657|emb|CAS11096.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|300459486|gb|EFK22979.1| DNA protecting protein DprA [Escherichia coli MS 21-1]
gi|312287214|gb|EFR15124.1| DNA protecting protein DprA [Escherichia coli 2362-75]
gi|323189109|gb|EFZ74393.1| DNA protecting protein DprA [Escherichia coli RN587/1]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|16762877|ref|NP_458494.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144364|ref|NP_807706.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213161457|ref|ZP_03347167.1| hypothetical protein Salmoneentericaenterica_16122 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213650878|ref|ZP_03380931.1| hypothetical protein SentesTy_28815 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289824190|ref|ZP_06543785.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25346559|pir||AC1010 conserved hypothetical protein STY4392 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505184|emb|CAD09180.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140002|gb|AAO71566.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|191169308|ref|ZP_03031057.1| DNA protecting protein DprA [Escherichia coli B7A]
gi|218555843|ref|YP_002388756.1| DNA protecting protein DprA [Escherichia coli IAI1]
gi|218696978|ref|YP_002404645.1| DNA protecting protein DprA [Escherichia coli 55989]
gi|256020644|ref|ZP_05434509.1| DNA protecting protein DprA [Shigella sp. D9]
gi|300822911|ref|ZP_07103047.1| DNA protecting protein DprA [Escherichia coli MS 119-7]
gi|300918260|ref|ZP_07134864.1| DNA protecting protein DprA [Escherichia coli MS 115-1]
gi|307315136|ref|ZP_07594719.1| DNA protecting protein DprA [Escherichia coli W]
gi|309794561|ref|ZP_07688983.1| DNA protecting protein DprA [Escherichia coli MS 145-7]
gi|331670115|ref|ZP_08370954.1| protein smf [Escherichia coli TA271]
gi|331679354|ref|ZP_08380024.1| protein smf [Escherichia coli H591]
gi|332281840|ref|ZP_08394253.1| DNA protecting protein DprA [Shigella sp. D9]
gi|190900663|gb|EDV60463.1| DNA protecting protein DprA [Escherichia coli B7A]
gi|218353710|emb|CAU99980.1| conserved hypothetical protein [Escherichia coli 55989]
gi|218362611|emb|CAR00237.1| conserved hypothetical protein [Escherichia coli IAI1]
gi|300414521|gb|EFJ97831.1| DNA protecting protein DprA [Escherichia coli MS 115-1]
gi|300524677|gb|EFK45746.1| DNA protecting protein DprA [Escherichia coli MS 119-7]
gi|306905485|gb|EFN36020.1| DNA protecting protein DprA [Escherichia coli W]
gi|308121611|gb|EFO58873.1| DNA protecting protein DprA [Escherichia coli MS 145-7]
gi|315062577|gb|ADT76904.1| DNA protecting protein DprA [Escherichia coli W]
gi|323182764|gb|EFZ68165.1| DNA protecting protein DprA [Escherichia coli 1357]
gi|323376836|gb|ADX49104.1| DNA protecting protein DprA [Escherichia coli KO11]
gi|323944294|gb|EGB40370.1| DNA protecting protein DprA [Escherichia coli H120]
gi|324017408|gb|EGB86627.1| DNA protecting protein DprA [Escherichia coli MS 117-3]
gi|324116325|gb|EGC10245.1| DNA protecting protein DprA [Escherichia coli E1167]
gi|331062177|gb|EGI34097.1| protein smf [Escherichia coli TA271]
gi|331072526|gb|EGI43851.1| protein smf [Escherichia coli H591]
gi|332104192|gb|EGJ07538.1| DNA protecting protein DprA [Shigella sp. D9]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|193071554|ref|ZP_03052463.1| DNA protecting protein DprA [Escherichia coli E110019]
gi|192955142|gb|EDV85636.1| DNA protecting protein DprA [Escherichia coli E110019]
gi|320199473|gb|EFW74063.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Escherichia coli EC4100B]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|294777365|ref|ZP_06742816.1| DNA protecting protein DprA [Bacteroides vulgatus PC510]
gi|294448433|gb|EFG16982.1| DNA protecting protein DprA [Bacteroides vulgatus PC510]
Length = 371
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP--EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIE 60
++ + + K E RI + L + I+ ++ T I
Sbjct: 283 TSAEDLVKAMGWESSPKTEKTVQRELFPDLSEEEERIVKRLGKMPEGLQINTLVIDTNIP 342
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ +L EL++ G + G L M
Sbjct: 343 VNRMSALLFELEMKGVIRALAGGVYRLIM 371
>gi|157156735|ref|YP_001464753.1| DNA protecting protein DprA [Escherichia coli E24377A]
gi|300921906|ref|ZP_07138061.1| DNA protecting protein DprA [Escherichia coli MS 182-1]
gi|301325149|ref|ZP_07218681.1| DNA protecting protein DprA [Escherichia coli MS 78-1]
gi|157078765|gb|ABV18473.1| DNA protecting protein DprA [Escherichia coli E24377A]
gi|300421707|gb|EFK05018.1| DNA protecting protein DprA [Escherichia coli MS 182-1]
gi|300847981|gb|EFK75741.1| DNA protecting protein DprA [Escherichia coli MS 78-1]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|193066497|ref|ZP_03047541.1| DNA protecting protein DprA [Escherichia coli E22]
gi|194430286|ref|ZP_03062781.1| DNA protecting protein DprA [Escherichia coli B171]
gi|260846083|ref|YP_003223861.1| hypothetical protein ECO103_4017 [Escherichia coli O103:H2 str.
12009]
gi|300815504|ref|ZP_07095729.1| DNA protecting protein DprA [Escherichia coli MS 107-1]
gi|192925878|gb|EDV80528.1| DNA protecting protein DprA [Escherichia coli E22]
gi|194411675|gb|EDX28002.1| DNA protecting protein DprA [Escherichia coli B171]
gi|257761230|dbj|BAI32727.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
gi|300532396|gb|EFK53458.1| DNA protecting protein DprA [Escherichia coli MS 107-1]
gi|323162964|gb|EFZ48799.1| DNA protecting protein DprA [Escherichia coli E128010]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|320195377|gb|EFW70004.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Escherichia coli WV_060327]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|260857406|ref|YP_003231297.1| hypothetical protein ECO26_4387 [Escherichia coli O26:H11 str.
11368]
gi|257756055|dbj|BAI27557.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|74313804|ref|YP_312223.1| DNA protecting protein DprA [Shigella sonnei Ss046]
gi|73857281|gb|AAZ89988.1| Predicted Rossmann-fold nucleotide-binding protein [Shigella sonnei
Ss046]
gi|323164850|gb|EFZ50641.1| DNA protecting protein DprA [Shigella sonnei 53G]
Length = 374
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 291 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|212692602|ref|ZP_03300730.1| hypothetical protein BACDOR_02099 [Bacteroides dorei DSM 17855]
gi|237709086|ref|ZP_04539567.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752610|ref|ZP_06088179.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212664887|gb|EEB25459.1| hypothetical protein BACDOR_02099 [Bacteroides dorei DSM 17855]
gi|229456782|gb|EEO62503.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263235796|gb|EEZ21291.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 371
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP--EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIE 60
++ + K E RI + L + I+ ++ T I
Sbjct: 283 TSAEDLVKGMGWESSPKTEKTVQRELFPDLSEEEERIVKRLGKIPEGLQINTLVIDTNIP 342
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ +L EL++ G + G L M
Sbjct: 343 VNRMSALLFELEMKGVIRALAGGVYRLIM 371
>gi|323173922|gb|EFZ59550.1| DNA protecting protein DprA [Escherichia coli LT-68]
Length = 364
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 281 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 340
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 341 IAAVPGGYVRL 351
>gi|198243264|ref|YP_002217369.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197937780|gb|ACH75113.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|293412704|ref|ZP_06655372.1| hypothetical protein ECEG_03768 [Escherichia coli B354]
gi|291468351|gb|EFF10844.1| hypothetical protein ECEG_03768 [Escherichia coli B354]
Length = 364
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 280 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 333
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 334 ELELAGWIAAVPGGYVRL 351
>gi|26249870|ref|NP_755910.1| DNA protecting protein DprA [Escherichia coli CFT073]
gi|91212712|ref|YP_542698.1| DNA protecting protein DprA [Escherichia coli UTI89]
gi|117625568|ref|YP_858891.1| hypothetical protein APECO1_3161 [Escherichia coli APEC O1]
gi|218560347|ref|YP_002393260.1| DNA protecting protein DprA [Escherichia coli S88]
gi|218691572|ref|YP_002399784.1| DNA protecting protein DprA [Escherichia coli ED1a]
gi|227883417|ref|ZP_04001222.1| SMF family Rossmann fold nucleotide-binding protein [Escherichia
coli 83972]
gi|300979822|ref|ZP_07174724.1| DNA protecting protein DprA [Escherichia coli MS 45-1]
gi|301046056|ref|ZP_07193235.1| DNA protecting protein DprA [Escherichia coli MS 185-1]
gi|331659576|ref|ZP_08360514.1| protein smf [Escherichia coli TA206]
gi|26110298|gb|AAN82484.1|AE016767_244 Unknown protein fragment 1 [Escherichia coli CFT073]
gi|91074286|gb|ABE09167.1| unknown protein [Escherichia coli UTI89]
gi|115514692|gb|ABJ02767.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|218367116|emb|CAR04890.1| conserved hypothetical protein [Escherichia coli S88]
gi|218429136|emb|CAR10088.2| conserved hypothetical protein [Escherichia coli ED1a]
gi|227839561|gb|EEJ50027.1| SMF family Rossmann fold nucleotide-binding protein [Escherichia
coli 83972]
gi|294490069|gb|ADE88825.1| DNA protecting protein DprA [Escherichia coli IHE3034]
gi|300301941|gb|EFJ58326.1| DNA protecting protein DprA [Escherichia coli MS 185-1]
gi|300409428|gb|EFJ92966.1| DNA protecting protein DprA [Escherichia coli MS 45-1]
gi|307555373|gb|ADN48148.1| DNA protecting protein DprA [Escherichia coli ABU 83972]
gi|307628320|gb|ADN72624.1| DNA protecting protein DprA [Escherichia coli UM146]
gi|315292339|gb|EFU51691.1| DNA protecting protein DprA [Escherichia coli MS 153-1]
gi|315297151|gb|EFU56431.1| DNA protecting protein DprA [Escherichia coli MS 16-3]
gi|323950199|gb|EGB46081.1| DNA protecting protein DprA [Escherichia coli H252]
gi|324009051|gb|EGB78270.1| DNA protecting protein DprA [Escherichia coli MS 57-2]
gi|331052791|gb|EGI24824.1| protein smf [Escherichia coli TA206]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|83954521|ref|ZP_00963232.1| DNA processing protein DprA, putative [Sulfitobacter sp. NAS-14.1]
gi|83840805|gb|EAP79976.1| DNA processing protein DprA, putative [Sulfitobacter sp. NAS-14.1]
Length = 365
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYT---QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + I+ P I L P+ D ++ + +
Sbjct: 281 MDQLGRAKAAAASPPISQAAAPAPQRDIAALHTDILSRLGPSPVAEDQLLRDLAVAPGIA 340
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
VL+EL+L G + H G VS
Sbjct: 341 TPVLVELELNGHILRHAGGLVSRA 364
>gi|110643524|ref|YP_671254.1| DNA protecting protein DprA [Escherichia coli 536]
gi|191174469|ref|ZP_03035970.1| DNA protecting protein DprA [Escherichia coli F11]
gi|300973965|ref|ZP_07172372.1| DNA protecting protein DprA [Escherichia coli MS 200-1]
gi|306816372|ref|ZP_07450510.1| DNA protecting protein DprA [Escherichia coli NC101]
gi|331649082|ref|ZP_08350168.1| protein smf [Escherichia coli M605]
gi|110345116|gb|ABG71353.1| hypothetical protein Smf [Escherichia coli 536]
gi|190905277|gb|EDV64915.1| DNA protecting protein DprA [Escherichia coli F11]
gi|222034994|emb|CAP77737.1| Protein smf [Escherichia coli LF82]
gi|281180320|dbj|BAI56650.1| conserved hypothetical protein [Escherichia coli SE15]
gi|300308975|gb|EFJ63495.1| DNA protecting protein DprA [Escherichia coli MS 200-1]
gi|305850768|gb|EFM51225.1| DNA protecting protein DprA [Escherichia coli NC101]
gi|312947836|gb|ADR28663.1| DNA protecting protein DprA [Escherichia coli O83:H1 str. NRG 857C]
gi|324014962|gb|EGB84181.1| DNA protecting protein DprA [Escherichia coli MS 60-1]
gi|330909330|gb|EGH37844.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Escherichia coli AA86]
gi|331041580|gb|EGI13724.1| protein smf [Escherichia coli M605]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|293453604|ref|ZP_06664023.1| DNA processing protein [Escherichia coli B088]
gi|291321730|gb|EFE61161.1| DNA processing protein [Escherichia coli B088]
Length = 367
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 284 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 343
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 344 IAAVPGGYVRL 354
>gi|325267229|ref|ZP_08133892.1| DNA protecting protein DprA [Kingella denitrificans ATCC 33394]
gi|324981290|gb|EGC16939.1| DNA protecting protein DprA [Kingella denitrificans ATCC 33394]
Length = 397
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + PIH D + + +Y L EL+L G + P G+
Sbjct: 347 LLAMMGYDPIHPDLLAEKCKLATDEIYAQLTELELDGVVAAMPGGRFQR 395
>gi|237703015|ref|ZP_04533496.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226902279|gb|EEH88538.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315284580|gb|EFU44025.1| DNA protecting protein DprA [Escherichia coli MS 110-3]
gi|323954592|gb|EGB50375.1| DNA protecting protein DprA [Escherichia coli H263]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|168239762|ref|ZP_02664820.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194735114|ref|YP_002116349.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194710616|gb|ACF89837.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197287577|gb|EDY26969.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322615054|gb|EFY11978.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617341|gb|EFY14242.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625563|gb|EFY22388.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626405|gb|EFY23214.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632083|gb|EFY28836.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635038|gb|EFY31761.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643261|gb|EFY39828.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646655|gb|EFY43162.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322650001|gb|EFY46420.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652718|gb|EFY49058.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659525|gb|EFY55769.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665533|gb|EFY61720.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670427|gb|EFY66566.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670500|gb|EFY66634.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675076|gb|EFY71159.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681613|gb|EFY77642.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685957|gb|EFY81946.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195827|gb|EFZ81000.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196417|gb|EFZ81568.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202702|gb|EFZ87741.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207307|gb|EFZ92257.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211257|gb|EFZ96102.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216034|gb|EGA00765.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223475|gb|EGA07803.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226795|gb|EGA10985.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231843|gb|EGA15953.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233204|gb|EGA17299.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237271|gb|EGA21336.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245506|gb|EGA29505.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249012|gb|EGA32934.1| hypothetical protein SEEM9199_19300 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250635|gb|EGA34516.1| hypothetical protein SEEM8282_12355 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323263013|gb|EGA46560.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266013|gb|EGA49508.1| hypothetical protein SEEM8285_14309 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272770|gb|EGA56173.1| hypothetical protein SEEM8287_01932 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|197261825|ref|ZP_03161899.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|207858647|ref|YP_002245298.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|197240080|gb|EDY22700.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|206710450|emb|CAR34808.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|56415325|ref|YP_152400.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364255|ref|YP_002143892.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56129582|gb|AAV79088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095732|emb|CAR61302.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|168823237|ref|ZP_02835237.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205340490|gb|EDZ27254.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320087851|emb|CBY97614.1| Protein smf [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|167554202|ref|ZP_02347943.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205321543|gb|EDZ09382.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 374
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|319764919|ref|YP_004128856.1| DNA protecting protein dpra [Alicycliphilus denitrificans BC]
gi|317119480|gb|ADV01969.1| DNA protecting protein DprA [Alicycliphilus denitrificans BC]
Length = 379
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + +L P+ +D ++ TG+ A + + LLEL+L G++
Sbjct: 306 PAAEQAPASDAPPPAAPAHQEVLDALGFDPLGLDALVARTGLPAATLQVRLLELELDGQV 365
Query: 78 CHHPEGKVSL 87
P G
Sbjct: 366 ARLPGGLFQR 375
>gi|291612478|ref|YP_003522635.1| DNA protecting protein DprA [Sideroxydans lithotrophicus ES-1]
gi|291582590|gb|ADE10248.1| DNA protecting protein DprA [Sideroxydans lithotrophicus ES-1]
Length = 354
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ L P+ +D ++ +G+ + +LL+L+L G + P G
Sbjct: 296 SNNAPEHPLFMHLGFEPLDVDALMQLSGLTIAELSAILLQLELDGHIASLPGGLYQR 352
>gi|227329890|ref|ZP_03833914.1| hypothetical protein PcarcW_22156 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 278
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (37%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ S I++ E + + ++ + +D + G P +
Sbjct: 186 EQLVSELQWLPMQSGQTISNEEEDGELPFADVLANVGDEVTPVDVVAERAGQPVPEIVTK 245
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V L
Sbjct: 246 LLELELAGWIAAVPGGYVRL 265
>gi|62181911|ref|YP_218328.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|224585200|ref|YP_002638999.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238913880|ref|ZP_04657717.1| hypothetical protein SentesTe_22485 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|62129544|gb|AAX67247.1| putative protein involved in DNA uptake [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224469728|gb|ACN47558.1| hypothetical protein SPC_3474 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322716397|gb|EFZ07968.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 374
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|16766694|ref|NP_462309.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167995180|ref|ZP_02576270.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168245232|ref|ZP_02670164.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194443920|ref|YP_002042657.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194450294|ref|YP_002047430.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197251290|ref|YP_002148326.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|16421961|gb|AAL22268.1| putative protein involved in DNA uptake [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194402583|gb|ACF62805.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194408598|gb|ACF68817.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197214993|gb|ACH52390.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|205327101|gb|EDZ13865.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205336013|gb|EDZ22777.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|261248562|emb|CBG26400.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995614|gb|ACY90499.1| hypothetical protein STM14_4108 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159948|emb|CBW19467.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914428|dbj|BAJ38402.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226457|gb|EFX51507.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|332990257|gb|AEF09240.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 374
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|168752266|ref|ZP_02777288.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4113]
gi|168758513|ref|ZP_02783520.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4401]
gi|168769147|ref|ZP_02794154.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4486]
gi|168777857|ref|ZP_02802864.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4196]
gi|168783852|ref|ZP_02808859.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4076]
gi|195939833|ref|ZP_03085215.1| hypothetical protein EscherichcoliO157_26116 [Escherichia coli
O157:H7 str. EC4024]
gi|208808566|ref|ZP_03250903.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4206]
gi|208812997|ref|ZP_03254326.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4045]
gi|208818340|ref|ZP_03258660.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4042]
gi|209395952|ref|YP_002272742.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4115]
gi|254795222|ref|YP_003080059.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. TW14359]
gi|187766998|gb|EDU30842.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4196]
gi|188013853|gb|EDU51975.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4113]
gi|188998884|gb|EDU67870.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4076]
gi|189354674|gb|EDU73093.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4401]
gi|189361780|gb|EDU80199.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4486]
gi|208728367|gb|EDZ77968.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4206]
gi|208734274|gb|EDZ82961.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4045]
gi|208738463|gb|EDZ86145.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4042]
gi|209157352|gb|ACI34785.1| DNA protecting protein DprA [Escherichia coli O157:H7 str. EC4115]
gi|209757372|gb|ACI76998.1| hypothetical protein ECs4151 [Escherichia coli]
gi|209757376|gb|ACI77000.1| hypothetical protein ECs4151 [Escherichia coli]
gi|254594622|gb|ACT73983.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
gi|326344521|gb|EGD68270.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Escherichia coli O157:H7 str. 1125]
Length = 374
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGRPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|85373787|ref|YP_457849.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
gi|84786870|gb|ABC63052.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
Length = 367
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYT-QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
S +S + PE + E + L P+ +D++I +G A V L LLE
Sbjct: 289 SPRSSFREAAALEFDPAPEELAEAEPADVAGLLTTAPVAVDELIRQSGEPAAAVQLALLE 348
Query: 71 LDLAGRLCHHPEGKVSLT 88
L+++G+L H G+VS T
Sbjct: 349 LEISGQLTRHAGGRVSRT 366
>gi|294789444|ref|ZP_06754681.1| putative DNA processing protein DprA [Simonsiella muelleri ATCC
29453]
gi|294482657|gb|EFG30347.1| putative DNA processing protein DprA [Simonsiella muelleri ATCC
29453]
Length = 421
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P + + I + ++ N +H D I T I
Sbjct: 337 KPVNKPTPITPTLL--PVDEIVDNFVDNSVNESTKSVLNAMGNEIVHPDFIAEKTNIPTD 394
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTM 89
+Y +LLE +LAG + G+ T
Sbjct: 395 EIYAILLECELAGWVMATAGGRYQRTT 421
>gi|258517150|ref|YP_003193372.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
gi|257780855|gb|ACV64749.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
Length = 368
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 25/76 (32%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ ++N + I L+ +P ++ + G + +L +
Sbjct: 292 ERRINSNEAHRNKRVNEIPPLSQIEKEIYDHLSPIPQSVEQLAGILGSNPSALLRILCAM 351
Query: 72 DLAGRLCHHPEGKVSL 87
+L G++ G V
Sbjct: 352 ELEGKIELLAGGMVRR 367
>gi|254251080|ref|ZP_04944398.1| hypothetical protein BDAG_00251 [Burkholderia dolosa AUO158]
gi|124893689|gb|EAY67569.1| hypothetical protein BDAG_00251 [Burkholderia dolosa AUO158]
Length = 440
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + N + P T ER + +L P+ + + H+G+
Sbjct: 339 IAPVSGEGKPAPTVSPNACAAPDAAQPPACTPSERA-VLAALGYGPVTYEWLAEHSGLSD 397
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
++ LL L+LAGR+ G+ + P+P
Sbjct: 398 DALHRALLALELAGRVASVAGGRFARLDAAPTP 430
>gi|168264714|ref|ZP_02686687.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|200387711|ref|ZP_03214323.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604809|gb|EDZ03354.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205346865|gb|EDZ33496.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 374
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 290 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|329295655|ref|ZP_08252991.1| DNA protecting protein DprA [Plautia stali symbiont]
Length = 374
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+S S+T +++ + P + + ++ + +D + G PV+ LL
Sbjct: 290 LPASISETIYSQLSDDVALPFPS------VLANVGDEVTPVDVVAERAGQPVPVIAAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|237728620|ref|ZP_04559101.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909242|gb|EEH95160.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 374
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDEPEKSIYSPDHEEVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAVVPGGYVRL 361
>gi|149186760|ref|ZP_01865071.1| DNA processing chain A [Erythrobacter sp. SD-21]
gi|148829668|gb|EDL48108.1| DNA processing chain A [Erythrobacter sp. SD-21]
Length = 372
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S +S + E+ + E I L PI +D+++ +G A V L LLEL
Sbjct: 295 SPRSTFREPVSHFDFEPAEFAEAEPADIASLLTTAPIAVDELVRQSGKGAAAVQLALLEL 354
Query: 72 DLAGRLCHHPEGKVSLT 88
++AGRL H G+VSL+
Sbjct: 355 EIAGRLERHAAGRVSLS 371
>gi|309703697|emb|CBJ03038.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
Length = 374
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++ ++ + P + ++ + +D + G P V LL
Sbjct: 290 LPDAPENSFYSPDQQDVALPFPG------LLANVGDEVTPVDVVAERAGQPVPEVVTQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|89895301|ref|YP_518788.1| hypothetical protein DSY2555 [Desulfitobacterium hafniense Y51]
gi|219669735|ref|YP_002460170.1| DNA protecting protein DprA [Desulfitobacterium hafniense DCB-2]
gi|89334749|dbj|BAE84344.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539995|gb|ACL21734.1| DNA protecting protein DprA [Desulfitobacterium hafniense DCB-2]
Length = 389
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E+ +I L++VP HID I ++ + + L LLEL LAGR+ P L
Sbjct: 331 SSEQQQILNQLSDVPTHIDQITMNSEVPPEQIPLALLELQLAGRIEQLPGQLYVLA 386
>gi|159043687|ref|YP_001532481.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
gi|157911447|gb|ABV92880.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
Length = 379
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R R+ +L P+ D +I G+ A V L+EL+++G++ P G
Sbjct: 320 PSA------DELRGRVLATLGATPLPEDQVIRALGLPAAQVNAALVELEMSGQITRAPGG 373
Query: 84 KVSL 87
+SL
Sbjct: 374 MLSL 377
>gi|238763700|ref|ZP_04624659.1| DNA protecting protein DprA [Yersinia kristensenii ATCC 33638]
gi|238698002|gb|EEP90760.1| DNA protecting protein DprA [Yersinia kristensenii ATCC 33638]
Length = 373
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ I+ E + + ++ + +D + G P + LLEL+LAG +
Sbjct: 293 PDKVIISSSEEQVELPFADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAA 352
Query: 80 HPEGKVSL 87
P G V L
Sbjct: 353 VPGGYVRL 360
>gi|328954307|ref|YP_004371641.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109]
gi|328454631|gb|AEB10460.1| DNA protecting protein DprA [Desulfobacca acetoxidans DSM 11109]
Length = 366
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
P + I L+N P+ +DD+I +G+ A V L L+L G + P
Sbjct: 302 EAKVPTPSARIEDPIIAHLSNAPVQLDDLIRTSGLAAGEVMSRLTLLELQGLVRELPGKF 361
Query: 85 VSLT 88
L
Sbjct: 362 FLLA 365
>gi|296535601|ref|ZP_06897782.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
gi|296264117|gb|EFH10561.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
Length = 364
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 32/84 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + E ++ + + P+ +D+++ + A V
Sbjct: 278 TLPSAPRRTAGAARRPAPVEAALPLASPLDEAGQLLDLIGSSPVVVDELLRRCHLSAAAV 337
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
+LL+L+L GR+ P +V +
Sbjct: 338 QALLLDLELEGRIQALPGNRVVRS 361
>gi|254463451|ref|ZP_05076867.1| DNA protecting protein DprA [Rhodobacterales bacterium HTCC2083]
gi|206680040|gb|EDZ44527.1| DNA protecting protein DprA [Rhodobacteraceae bacterium HTCC2083]
Length = 356
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ T RI L PI D ++ G V L L++ G++
Sbjct: 288 AESTKPKRSLFETSKLLQRILDQLGPSPIAEDQLLRDIGAHTSKVIPALTNLEMDGQIKR 347
Query: 80 HPEGKVSL 87
P G +S
Sbjct: 348 GPGGMISR 355
>gi|296445900|ref|ZP_06887851.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
gi|296256568|gb|EFH03644.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
Length = 412
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ L P+ ID++I G+ A V+ LLELDLAGR+ H VSL
Sbjct: 361 AHVVALLGPAPVTIDELIRAAGLPAREVHAALLELDLAGRVARHGANLVSL 411
>gi|241762041|ref|ZP_04760125.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241373507|gb|EER63094.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 385
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQ---CERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E++ + I P + ER I+ + + P+ ++++I +G+E +
Sbjct: 300 EKSPLEPRFSGLENGQIGYRSSPAIAEVKAKEREIIQSLIGSAPVGVNELIRQSGLENAI 359
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +LLE++LAGRL H G+VSL
Sbjct: 360 IQTILLEMELAGRLESHAGGRVSL 383
>gi|163738379|ref|ZP_02145794.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
BS107]
gi|161388300|gb|EDQ12654.1| DNA processing protein DprA, putative [Phaeobacter gallaeciensis
BS107]
Length = 355
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 27/93 (29%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P +S T T I L P D ++ I +
Sbjct: 254 RPVPPPEAAASARLTELPPPPKEQRSLSDTAALHQLILDRLGPAPTAEDQLVRDLAIPSR 313
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
+ L +L+L+G + G + P P+
Sbjct: 314 DLAPALTDLELSGAVARAAGGLLIRGDFDPDPK 346
>gi|319785848|ref|YP_004145323.1| DNA protecting protein DprA [Pseudoxanthomonas suwonensis 11-1]
gi|317464360|gb|ADV26092.1| DNA protecting protein DprA [Pseudoxanthomonas suwonensis 11-1]
Length = 375
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 29/80 (36%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ T + R+ ++L + PI +D ++ TG+ + +LL
Sbjct: 290 LALEPDVAPEGASAGGTETAPPLSADHQRLWRALGHDPIPMDVLVERTGLTPASLSSMLL 349
Query: 70 ELDLAGRLCHHPEGKVSLTM 89
++L GR+ +
Sbjct: 350 AMELDGRVVAEHGRYARRST 369
>gi|89071023|ref|ZP_01158240.1| DNA processing protein DprA, putative [Oceanicola granulosus
HTCC2516]
gi|89043411|gb|EAR49628.1| DNA processing protein DprA, putative [Oceanicola granulosus
HTCC2516]
Length = 356
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCE-RVRIKQSLNNVPIHIDDIIHHTGI 59
++ P + P T E RI + L P+ D +I +
Sbjct: 267 VIGPAAPEAPRQPDLPLVAPDPPPPAVRPAATMAELHRRILEKLGPSPLAEDQLIRDLAV 326
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
A + L EL+L G + P G +S +
Sbjct: 327 TATALAPALTELELDGAVTRQPGGLLSRS 355
>gi|302036384|ref|YP_003796706.1| protein SMF, putative DNA protecting protein DprA [Candidatus
Nitrospira defluvii]
gi|300604448|emb|CBK40780.1| Protein SMF, putative DNA protecting protein DprA [Candidatus
Nitrospira defluvii]
Length = 378
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ PQ++ F ++ + E + + +L+ +P +D++I +G+ A
Sbjct: 291 LLPQLDP-AFRARLAEGAGT---VAQPKEPFSLDETLVYDALSVLPQPVDEVIRRSGLPA 346
Query: 62 PVVYLVLLELDLAGRLCHHPEG-KVSLT 88
V +LL L+L + P V L
Sbjct: 347 AQVAAILLSLELKNCIRQLPGNEYVRLA 374
>gi|238783198|ref|ZP_04627224.1| DNA protecting protein DprA [Yersinia bercovieri ATCC 43970]
gi|238715994|gb|EEQ07980.1| DNA protecting protein DprA [Yersinia bercovieri ATCC 43970]
Length = 373
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V L
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPEIVSKLLELELAGWIAAVPGGYVRL 360
>gi|237749119|ref|ZP_04579599.1| DNA processing protein [Oxalobacter formigenes OXCC13]
gi|229380481|gb|EEO30572.1| DNA processing protein [Oxalobacter formigenes OXCC13]
Length = 375
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ E+ I + P+ D + ++A + + LL L+L+G + P G
Sbjct: 310 ERAEDEFSDEQKLILAQMGYDPVDADILSERCDMDAASLSVELLNLELSGNVESLPGGFY 369
Query: 86 SL 87
Sbjct: 370 RR 371
>gi|332525406|ref|ZP_08401566.1| putative SMF protein [Rubrivivax benzoatilyticus JA2]
gi|332108675|gb|EGJ09899.1| putative SMF protein [Rubrivivax benzoatilyticus JA2]
Length = 365
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 26/70 (37%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T+ + +L + P +D ++ TG + LLEL+L G+L
Sbjct: 294 TRPAAALSAVPDADTPADPVLAALGHEPATLDALLARTGWPTAELSARLLELELDGQLAR 353
Query: 80 HPEGKVSLTM 89
P G +
Sbjct: 354 LPGGLFQRRV 363
>gi|251788005|ref|YP_003002726.1| DNA protecting protein DprA [Dickeya zeae Ech1591]
gi|247536626|gb|ACT05247.1| DNA protecting protein DprA [Dickeya zeae Ech1591]
Length = 377
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P V LL+L+LAG + P G V +
Sbjct: 314 ADVLATVGDEVTPVDVVAERAGQPVPEVVSKLLDLELAGWIAAVPGGYVRI 364
>gi|298372209|ref|ZP_06982199.1| DNA processing protein DprA [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275113|gb|EFI16664.1| DNA processing protein DprA [Bacteroidetes oral taxon 274 str.
F0058]
Length = 363
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 26/78 (33%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ F S ++ + +PE E I L P ++++ I + L
Sbjct: 285 DIFLSMGWSHSCQKPQTELFPEELTAEEGDIVAILRKKPTEVNELSRMVDIPIQKLISTL 344
Query: 69 LELDLAGRLCHHPEGKVS 86
+ L+ G + P
Sbjct: 345 ILLEFKGVVKALPGNIYK 362
>gi|322420083|ref|YP_004199306.1| DNA protecting protein DprA [Geobacter sp. M18]
gi|320126470|gb|ADW14030.1| DNA protecting protein DprA [Geobacter sp. M18]
Length = 359
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
++ S + + + L + IDDII + + A V
Sbjct: 279 EDILEELSIEPLATHPLQKPPCFPLTPQEAELYALLCQGVLQIDDIIVQSALTAGEVSAT 338
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LL L+L G + P + S+
Sbjct: 339 LLRLELKGIVTQLPGKRFSV 358
>gi|323136208|ref|ZP_08071290.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
gi|322398282|gb|EFY00802.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
Length = 424
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRI-------KQSLNNVPIHIDDIIHHTGI 59
E+ S + T P+ + R+ L P+ +D++I G+
Sbjct: 331 EEGPPSPLFAAPEPELGPETASPDPSAPVHGRVADPHEVVLSLLGPSPVAVDELIRIAGL 390
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSL 87
A V+ VL+ELDLAGRL H VSL
Sbjct: 391 PARDVHGVLVELDLAGRLERHGTNAVSL 418
>gi|56552090|ref|YP_162929.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543664|gb|AAV89818.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQ---CERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E++ + I P + +R I+ + + P+ ++++I +G+E +
Sbjct: 300 EKSPLEPRFSGLENGQIGYRSSPAIAEVKAKDREIIQSLIGSAPVGVNELIRQSGLENAI 359
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +LLE++LAGRL H G+VSL
Sbjct: 360 IQTILLEMELAGRLESHAGGRVSL 383
>gi|331684928|ref|ZP_08385514.1| protein smf [Escherichia coli H299]
gi|331077299|gb|EGI48511.1| protein smf [Escherichia coli H299]
Length = 374
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ ++ ++ + P + ++ + +D + G P V LLEL+
Sbjct: 293 APENSFYSPDQEDVALPFP------ELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELE 346
Query: 73 LAGRLCHHPEGKVSL 87
LAG + P G V L
Sbjct: 347 LAGWIAAVPGGYVRL 361
>gi|167834977|ref|ZP_02461860.1| DNA protecting protein DprA [Burkholderia thailandensis MSMB43]
Length = 396
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 32/83 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E F ++ + R+ ++ P+ ++ + T + + +
Sbjct: 292 LEEFGFDPARPAGATRGAPAAAEADVDPDDDARRLLAAIGYGPVPLELLAQRTALSSGAL 351
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ LL+L+LAGR+ P G+
Sbjct: 352 HRRLLQLELAGRIAALPGGRYMR 374
>gi|113869637|ref|YP_728126.1| Smf protein [Ralstonia eutropha H16]
gi|113528413|emb|CAJ94758.1| Smf protein [Ralstonia eutropha H16]
Length = 399
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
++ + +L P+ +D + +G V LLEL+LAG P
Sbjct: 332 SVPEQPDLSDFAGHADPLLAALGYDPVTLDALCERSGQPPEAVAARLLELELAGHAERLP 391
Query: 82 EGKVSL 87
Sbjct: 392 GNVFRR 397
>gi|332967865|gb|EGK06961.1| SMF-family protein [Kingella kingae ATCC 23330]
Length = 401
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 19 HTKNINITHYPEYTQCERVR----IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
I+ + PE + ++ PIH D + + + A VY L EL+L
Sbjct: 327 PIAQISEVNEPETPSSLHENSDNVLLNAMGFSPIHPDLLAENLNLPAVDVYAELTELELD 386
Query: 75 GRLCHHPEGKVSL 87
G + G+
Sbjct: 387 GWIVSMAGGRFQR 399
>gi|332884289|gb|EGK04557.1| hypothetical protein HMPREF9456_00884 [Dysgonomonas mossii DSM
22836]
Length = 373
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 10 FFSSQSDTNHTKNINITHYPEYT----QCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVV 64
F N + + + I L+ IHID + G+ A +
Sbjct: 290 FLQQMGWDNESPKKKKAPIQQSLFTILTDDEQTIVNKLSEKESIHIDQLARELGVPAYSL 349
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
+ LLE+++ G + P +++
Sbjct: 350 FSTLLEMEMKGMIRTLPGNLYTIS 373
>gi|332991531|gb|AEF01586.1| DNA protecting protein DprA [Alteromonas sp. SN2]
Length = 385
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 27/79 (34%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + +N ++ E ++ S++ ID I V L
Sbjct: 304 DEIVVSTGERECQNEALSKKSEVNNLATDKLLDSVDYDITAIDVIAQRCTSPVNEVMASL 363
Query: 69 LELDLAGRLCHHPEGKVSL 87
LE +L G + P G + L
Sbjct: 364 LEYELRGLVAAVPGGYIKL 382
>gi|225025550|ref|ZP_03714742.1| hypothetical protein EIKCOROL_02450 [Eikenella corrodens ATCC
23834]
gi|224941696|gb|EEG22905.1| hypothetical protein EIKCOROL_02450 [Eikenella corrodens ATCC
23834]
Length = 430
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + P T+ E + Q++ +H D + + A VY L L
Sbjct: 347 RQAESLPSEQPALVDATPASTETETSPLLQAMGYDAVHPDSLAERLKLPAADVYAELTLL 406
Query: 72 DLAGRLCHHPEGKVSL 87
++ G++ G+
Sbjct: 407 EINGQIAPLSGGRYQR 422
>gi|238792970|ref|ZP_04636600.1| DNA protecting protein DprA [Yersinia intermedia ATCC 29909]
gi|238727824|gb|EEQ19348.1| DNA protecting protein DprA [Yersinia intermedia ATCC 29909]
Length = 373
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V L
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAAVPGGYVRL 360
>gi|161506041|ref|YP_001573153.1| DNA protecting protein DprA [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867388|gb|ABX24011.1| hypothetical protein SARI_04222 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 364
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P V LLEL+LAG + P G V L
Sbjct: 302 ELLANVGDEVTPVDVVAERAGQPVPAVVAQLLELELAGWIAAVPGGYVRL 351
>gi|284006130|emb|CBA71371.1| DNA processing protein [Arsenophonus nasoniae]
Length = 376
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I + +N P ID I +G+ V LLE +L G++ G + +
Sbjct: 327 ILRYINFEPTPIDLIAERSGLSVIEVSAQLLEFELMGKVIFVSGGYIRV 375
>gi|83950056|ref|ZP_00958789.1| DNA processing protein DprA, putative [Roseovarius nubinhibens ISM]
gi|83837955|gb|EAP77251.1| DNA processing protein DprA, putative [Roseovarius nubinhibens ISM]
Length = 362
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 27/73 (36%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ T +I L P+ D +I G+ A V L++L+LAG
Sbjct: 289 APDIPAAPPEKRSLRDTAQLHSQILNRLGPSPLPEDQLIRDMGLGANAVAPALVDLELAG 348
Query: 76 RLCHHPEGKVSLT 88
R+ G +S
Sbjct: 349 RIQRQAGGLLSRN 361
>gi|148256077|ref|YP_001240662.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
gi|146408250|gb|ABQ36756.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
Length = 372
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ ++ P +R +I L P+ IDD+I +G+ V+ +VL
Sbjct: 293 PIMERPPSASLRESDEELFAPAPESHDRDQIIALLGPTPVSIDDLIRISGLSPAVLRVVL 352
Query: 69 LELDLAGRLCHHPEGKVSLT 88
LEL+LAGRL H G VSL
Sbjct: 353 LELELAGRLERHGGGMVSLA 372
>gi|150003815|ref|YP_001298559.1| putative DNA processing Smf-like protein [Bacteroides vulgatus ATCC
8482]
gi|149932239|gb|ABR38937.1| putative DNA processing Smf-like protein [Bacteroides vulgatus ATCC
8482]
Length = 371
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP--EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIE 60
++ + + K E RI + L + + I+ ++ T I
Sbjct: 283 TSAEDLVKAMGWESSPKTEKTVQRELFPDLSEEEERIVKRLGKMSEGLQINTLVIDTNIP 342
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ +L EL++ G + G L M
Sbjct: 343 VNRMSALLFELEMKGVIRALAGGVYRLIM 371
>gi|4511994|gb|AAD21554.1| DNA processing chain A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+R I+ + + P+ ++++I +G+E ++ +LLE++LAGRL H G+VSL
Sbjct: 331 DREIIQSLIGSGPVGVNELIRQSGLENAIIQTILLEMELAGRLESHAGGRVSL 383
>gi|238797210|ref|ZP_04640711.1| DNA protecting protein DprA [Yersinia mollaretii ATCC 43969]
gi|238718847|gb|EEQ10662.1| DNA protecting protein DprA [Yersinia mollaretii ATCC 43969]
Length = 373
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V L
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAAVPGGYVRL 360
>gi|300718671|ref|YP_003743474.1| DNA protecting protein [Erwinia billingiae Eb661]
gi|299064507|emb|CAX61627.1| DNA protecting protein [Erwinia billingiae Eb661]
Length = 374
Score = 63.3 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V L
Sbjct: 311 ADVLANVGDEVTPVDVVAERAGQPVPTIVAKLLELELAGWIAAVPGGYVRL 361
>gi|323256863|gb|EGA40577.1| hypothetical protein SEEM8283_16851 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
Length = 127
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 43 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 96
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 97 ELELAGWIAAVPGGYVRL 114
>gi|242237893|ref|YP_002986074.1| DNA protecting protein DprA [Dickeya dadantii Ech703]
gi|242129950|gb|ACS84252.1| DNA protecting protein DprA [Dickeya dadantii Ech703]
Length = 377
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + ++ + +D + G P V LL+L+LAG + P G V +
Sbjct: 305 PEAELELPFADVLANVGDEVTPVDVVAERAGQPVPEVVSKLLDLELAGWIAAVPGGYVRI 364
>gi|261342755|ref|ZP_05970613.1| DNA protecting protein DprA [Enterobacter cancerogenus ATCC 35316]
gi|288314934|gb|EFC53872.1| DNA protecting protein DprA [Enterobacter cancerogenus ATCC 35316]
Length = 374
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+++ + P ++ ++ + +D + G PV LL
Sbjct: 290 LPEEPEKRHNSSDQQAVALPFP------KLLANVGDEVTPVDVVAERAGQPVPVTVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|170079101|ref|YP_001735739.1| DNA protecting protein [Synechococcus sp. PCC 7002]
gi|169886770|gb|ACB00484.1| DNA protecting protein [Synechococcus sp. PCC 7002]
Length = 381
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
PQ+ +F + + + E + + Q++ P D I+ +G+ A
Sbjct: 300 SPQLSLSFPEPAVEPTPQPSTDFR----QISPELLPLWQAIAPEPTAFDLIVVQSGMGAD 355
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
V LL+ +L G + P +
Sbjct: 356 QVSATLLQWELEGFITQLPGMRYRR 380
>gi|110679407|ref|YP_682414.1| DNA processing protein DprA, putative [Roseobacter denitrificans
OCh 114]
gi|109455523|gb|ABG31728.1| DNA processing protein DprA, putative [Roseobacter denitrificans
OCh 114]
Length = 389
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 31/86 (36%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P++ ++ + I + +I L+ P+ D +I + A
Sbjct: 304 APELPLPASATARPKETARPTKIKTTLKQAAALHRQILSKLSPAPVPEDQLIRDLAVSAS 363
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
LL+L+L G++ G +S
Sbjct: 364 EAAPALLDLELDGQIKREAGGMLSRA 389
>gi|91205528|ref|YP_537883.1| putative DNA processing protein DprA [Rickettsia bellii RML369-C]
gi|91069072|gb|ABE04794.1| Putative DNA processing protein DprA [Rickettsia bellii RML369-C]
Length = 225
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
K +N E ++ ER + + L+ VPI D + T + P++Y ++LEL+LAG+ H
Sbjct: 153 KRLNTIQVKEPSEKERAAVIELLSAVPIDFDYLQKMTELPLPIIYTIILELELAGKAMRH 212
Query: 81 PEGKVSL 87
P K+SL
Sbjct: 213 PSNKISL 219
>gi|58039717|ref|YP_191681.1| DNA processing chain A [Gluconobacter oxydans 621H]
gi|58002131|gb|AAW61025.1| DNA processing chain A [Gluconobacter oxydans 621H]
Length = 394
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 30/82 (36%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ S+ + + + + L+ P+ +DD++ V
Sbjct: 310 AHSPPLTGFSEPSTPWGSPTSEDWVEPDLAQKTVCSLLSVTPVAVDDVVRRCQFSVSAVL 369
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L EL+L G + P G+V+L
Sbjct: 370 ATLAELELGGVVEFVPGGRVAL 391
>gi|300692921|ref|YP_003753916.1| smf, DNA processing chain A (drpA) [Ralstonia solanacearum PSI07]
gi|299079981|emb|CBJ52658.1| putative smf, DNA processing chain A (drpA) [Ralstonia solanacearum
PSI07]
Length = 401
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +L P+ +D + TG A ++ LL L+L GR+ P G+
Sbjct: 351 LLDALGFDPVDLDTLCERTGQTAAILSAQLLALELGGRIERQPGGRF 397
>gi|146313351|ref|YP_001178425.1| DNA protecting protein DprA [Enterobacter sp. 638]
gi|145320227|gb|ABP62374.1| DNA protecting protein DprA [Enterobacter sp. 638]
Length = 374
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
S+ ++ + P + ++ + +D + G PV LL
Sbjct: 290 IPSAPEMVLYSSDQEEVALPFP------ELLANVGDEVTPVDVVAERAGQSVPVTVAQLL 343
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 344 ELELAGWIAAVPGGYVRL 361
>gi|95929065|ref|ZP_01311810.1| DNA processing protein DprA, putative [Desulfuromonas acetoxidans
DSM 684]
gi|95134966|gb|EAT16620.1| DNA processing protein DprA, putative [Desulfuromonas acetoxidans
DSM 684]
Length = 363
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 22/66 (33%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ + + L P H+D + +G+ V ++L L+L G P
Sbjct: 295 EENEPTVPPLSNSQDMVLRKLGKTPRHLDKLATESGLTPMEVSAIVLHLELLGLAQSLPG 354
Query: 83 GKVSLT 88
G
Sbjct: 355 GHYIRA 360
>gi|118578968|ref|YP_900218.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
gi|118501678|gb|ABK98160.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
Length = 371
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 20 TKNINITHYPEY----TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ ++ PE + + L P+HIDDII T + A V +LL L+L G
Sbjct: 297 VPSGAVSPPPEPRVFALTPREAGVYELLARGPLHIDDIIVQTELTAAEVSSMLLHLELKG 356
Query: 76 RLCHHPEGKVS 86
+ P +
Sbjct: 357 AVTPLPGAHYA 367
>gi|332163226|ref|YP_004299803.1| DNA protecting protein DprA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667456|gb|ADZ44100.1| DNA protecting protein DprA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 373
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G P + LLEL+LAG +
Sbjct: 293 PEKVIISSSEEQVELPFADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAA 352
Query: 80 HPEGKVSL 87
P G V L
Sbjct: 353 VPGGYVRL 360
>gi|258541849|ref|YP_003187282.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256632927|dbj|BAH98902.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256635984|dbj|BAI01953.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-03]
gi|256639039|dbj|BAI05001.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-07]
gi|256642093|dbj|BAI08048.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-22]
gi|256645148|dbj|BAI11096.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-26]
gi|256648203|dbj|BAI14144.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-32]
gi|256651256|dbj|BAI17190.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654247|dbj|BAI20174.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-12]
Length = 214
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 3 HPQIEQNFFSSQS--DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P F S Q+ + Q R + L+ PI +DD+I
Sbjct: 119 EPPERAFFASPQNVDEKEPIALKPHFSAASTAQDVRENLLSLLSFTPIAVDDLIRRCQFS 178
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
A V + L EL+L+G + + G V L
Sbjct: 179 ASAVLVALTELELSGCVSTYSGGMVGLA 206
>gi|22127894|ref|NP_671317.1| DNA protecting protein DprA [Yersinia pestis KIM 10]
gi|45440101|ref|NP_991640.1| DNA protecting protein DprA [Yersinia pestis biovar Microtus str.
91001]
gi|108809221|ref|YP_653137.1| DNA protecting protein DprA [Yersinia pestis Antiqua]
gi|108813986|ref|YP_649753.1| DNA protecting protein DprA [Yersinia pestis Nepal516]
gi|145597484|ref|YP_001161559.1| DNA protecting protein DprA [Yersinia pestis Pestoides F]
gi|150260709|ref|ZP_01917437.1| hypothetical protein YPE_3025 [Yersinia pestis CA88-4125]
gi|153950674|ref|YP_001402829.1| DNA protecting protein DprA [Yersinia pseudotuberculosis IP 31758]
gi|165927839|ref|ZP_02223671.1| DNA protecting protein DprA [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936410|ref|ZP_02224978.1| DNA protecting protein DprA [Yersinia pestis biovar Orientalis str.
IP275]
gi|166010455|ref|ZP_02231353.1| DNA protecting protein DprA [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213168|ref|ZP_02239203.1| DNA protecting protein DprA [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399527|ref|ZP_02305051.1| DNA protecting protein DprA [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418705|ref|ZP_02310458.1| DNA protecting protein DprA [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425608|ref|ZP_02317361.1| DNA protecting protein DprA [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167468247|ref|ZP_02332951.1| DNA protecting protein DprA [Yersinia pestis FV-1]
gi|218927449|ref|YP_002345324.1| DNA protecting protein DprA [Yersinia pestis CO92]
gi|229836275|ref|ZP_04456442.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis Pestoides A]
gi|229840101|ref|ZP_04460260.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842183|ref|ZP_04462338.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis biovar Orientalis str. India
195]
gi|229904517|ref|ZP_04519628.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis Nepal516]
gi|270488265|ref|ZP_06205339.1| DNA protecting protein DprA [Yersinia pestis KIM D27]
gi|294502317|ref|YP_003566379.1| hypothetical protein YPZ3_0207 [Yersinia pestis Z176003]
gi|21961031|gb|AAM87568.1|AE014004_6 hypothetical protein y4024 [Yersinia pestis KIM 10]
gi|45434956|gb|AAS60517.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Yersinia pestis biovar Microtus str. 91001]
gi|108777634|gb|ABG20153.1| hypothetical protein YPN_3826 [Yersinia pestis Nepal516]
gi|108781134|gb|ABG15192.1| hypothetical protein YPA_3230 [Yersinia pestis Antiqua]
gi|115346060|emb|CAL18926.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209180|gb|ABP38587.1| hypothetical protein YPDSF_0165 [Yersinia pestis Pestoides F]
gi|149290117|gb|EDM40194.1| hypothetical protein YPE_3025 [Yersinia pestis CA88-4125]
gi|152962169|gb|ABS49630.1| DNA protecting protein DprA [Yersinia pseudotuberculosis IP 31758]
gi|165915526|gb|EDR34135.1| DNA protecting protein DprA [Yersinia pestis biovar Orientalis str.
IP275]
gi|165920115|gb|EDR37416.1| DNA protecting protein DprA [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165990545|gb|EDR42846.1| DNA protecting protein DprA [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205466|gb|EDR49946.1| DNA protecting protein DprA [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962699|gb|EDR58720.1| DNA protecting protein DprA [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167052031|gb|EDR63439.1| DNA protecting protein DprA [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055298|gb|EDR65092.1| DNA protecting protein DprA [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229678635|gb|EEO74740.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis Nepal516]
gi|229690493|gb|EEO82547.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis biovar Orientalis str. India
195]
gi|229696467|gb|EEO86514.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706343|gb|EEO92350.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia pestis Pestoides A]
gi|262360397|gb|ACY57118.1| hypothetical protein YPD4_0209 [Yersinia pestis D106004]
gi|262364347|gb|ACY60904.1| hypothetical protein YPD8_0214 [Yersinia pestis D182038]
gi|270336769|gb|EFA47546.1| DNA protecting protein DprA [Yersinia pestis KIM D27]
gi|294352776|gb|ADE63117.1| hypothetical protein YPZ3_0207 [Yersinia pestis Z176003]
gi|320013376|gb|ADV96947.1| Rossmann fold nucleotide-binding protein Smfpossibly involved in
DNA uptake [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 373
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G + LLEL+LAG +
Sbjct: 293 PEEVIISSPQEQVELPFADVLANVGDEVTPVDVVAERAGQPVQDIASKLLELELAGWIAA 352
Query: 80 HPEGKVSL 87
P G V +
Sbjct: 353 VPGGYVRI 360
>gi|330861817|emb|CBX71989.1| protein smf [Yersinia enterocolitica W22703]
Length = 367
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G P + LLEL+LAG +
Sbjct: 287 PEKVIISSSEEQVELPFADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAA 346
Query: 80 HPEGKVSL 87
P G V L
Sbjct: 347 VPGGYVRL 354
>gi|161526294|ref|YP_001581306.1| DNA protecting protein DprA [Burkholderia multivorans ATCC 17616]
gi|189348992|ref|YP_001944620.1| DNA processing protein [Burkholderia multivorans ATCC 17616]
gi|160343723|gb|ABX16809.1| DNA protecting protein DprA [Burkholderia multivorans ATCC 17616]
gi|189333014|dbj|BAG42084.1| DNA processing protein [Burkholderia multivorans ATCC 17616]
Length = 425
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ +L P+ + + G+ ++ LL L+LAGR+ G+
Sbjct: 352 PACPAEQAVLTALGYGPVTYEWLAERCGLPDDTLHRALLALELAGRVAPLAGGRYGRLDG 411
Query: 91 LPSP 94
P+P
Sbjct: 412 PPNP 415
>gi|39997645|ref|NP_953596.1| DNA processing protein DprA [Geobacter sulfurreducens PCA]
gi|39984537|gb|AAR35923.1| DNA processing protein DprA [Geobacter sulfurreducens PCA]
gi|298506585|gb|ADI85308.1| DNA uptake/processing protein SMF [Geobacter sulfurreducens KN400]
Length = 356
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ P+HID+II + + V +LL L+L G + P
Sbjct: 304 EAALMAMFGADPLHIDEIIAKSALTVGEVSAMLLRLELKGVVTQLPGKFF 353
>gi|318607708|emb|CBY29206.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 373
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G P + LLEL+LAG +
Sbjct: 293 PEKVIISSSEEQVELPFADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAA 352
Query: 80 HPEGKVSL 87
P G V L
Sbjct: 353 VPGGYVRL 360
>gi|194333226|ref|YP_002015086.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271]
gi|194311044|gb|ACF45439.1| DNA protecting protein DprA [Prosthecochloris aestuarii DSM 271]
Length = 382
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ E +I +L + P+HID + T I A + + L EL++ + P
Sbjct: 324 QSLSKEEQQILHTLGDKPLHIDLLAEKTAIPASSLLIRLFELEIKNLVEQLPG 376
>gi|325109981|ref|YP_004271049.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305]
gi|324970249|gb|ADY61027.1| DNA protecting protein DprA [Planctomyces brasiliensis DSM 5305]
Length = 389
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P+ E S + ++ I L++ P+HID +I +G+E
Sbjct: 304 RPRTEGTAVSP--AADPNGQEVRAPRELVLSDQQKAILNLLHDEPVHIDRVIDQSGLEPS 361
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
V L L++ + P +S
Sbjct: 362 RVLSTLTVLEMKRLVKRLPGNYLSR 386
>gi|170697717|ref|ZP_02888804.1| DNA protecting protein DprA [Burkholderia ambifaria IOP40-10]
gi|170137332|gb|EDT05573.1| DNA protecting protein DprA [Burkholderia ambifaria IOP40-10]
Length = 422
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL-- 87
+ +L P+ + + H+G+ V++ LL L+LAGR+ P G+ +
Sbjct: 348 PPHTPAERSVLAALGYGPVTYEWLAEHSGLSDDVLHSALLALELAGRVASVPGGRFARLD 407
Query: 88 -TMHLPS 93
H P
Sbjct: 408 AARHPPP 414
>gi|167645473|ref|YP_001683136.1| DNA protecting protein DprA [Caulobacter sp. K31]
gi|167347903|gb|ABZ70638.1| DNA protecting protein DprA [Caulobacter sp. K31]
Length = 366
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCE------RVRIKQSLNNVPIHIDDIIHHTGIEA 61
++ S S H + + E E R + + L+ P+ DD++ T
Sbjct: 280 EDVLRSLSGQAHLRERERPYAAEDDDAEIDHEALREEVARLLSPTPVSRDDLVRATRAPT 339
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVS 86
V L+EL LA R+ P G V+
Sbjct: 340 SAVMAALVELALAERVELLPGGMVA 364
>gi|51597954|ref|YP_072145.1| DNA protecting protein DprA [Yersinia pseudotuberculosis IP 32953]
gi|170022578|ref|YP_001719083.1| DNA protecting protein DprA [Yersinia pseudotuberculosis YPIII]
gi|186897150|ref|YP_001874262.1| DNA protecting protein DprA [Yersinia pseudotuberculosis PB1/+]
gi|51591236|emb|CAH22902.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|169749112|gb|ACA66630.1| DNA protecting protein DprA [Yersinia pseudotuberculosis YPIII]
gi|186700176|gb|ACC90805.1| DNA protecting protein DprA [Yersinia pseudotuberculosis PB1/+]
Length = 373
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G + LLEL+LAG +
Sbjct: 293 PEEVIISSPKEQVELPFADVLANVGDEVTPVDVVAERAGQPVQDIASKLLELELAGWIAA 352
Query: 80 HPEGKVSL 87
P G V +
Sbjct: 353 VPGGYVRI 360
>gi|73543092|ref|YP_297612.1| SMF protein [Ralstonia eutropha JMP134]
gi|72120505|gb|AAZ62768.1| SMF protein [Ralstonia eutropha JMP134]
Length = 379
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L + P+ +D + +G+ + LLEL+L GR P
Sbjct: 319 PPMRSTPDDPLLAVLTHDPVTLDTLCERSGLAPETLATRLLELELEGRAERLPGNLFR 376
>gi|289809873|ref|ZP_06540502.1| DNA protecting protein DprA [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 248
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 164 LPTTAENSLYSLNQDEAALPFP------ELLTNVGDEVTPVDVVAERAGQPVPAVVAQLL 217
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 218 ELELAGWIAAVPGGYVRL 235
>gi|123444063|ref|YP_001008033.1| DNA protecting protein DprA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122091024|emb|CAL13907.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 373
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G P + LLEL+LAG +
Sbjct: 293 PEKVIISSSEEQVELPFADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAA 352
Query: 80 HPEGKVSL 87
P G V L
Sbjct: 353 VPGGYVRL 360
>gi|119356222|ref|YP_910866.1| DNA protecting protein DprA [Chlorobium phaeobacteroides DSM 266]
gi|119353571|gb|ABL64442.1| DNA protecting protein DprA [Chlorobium phaeobacteroides DSM 266]
Length = 381
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYT---QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ S + + +NI + E + + + +HID I TG++ +
Sbjct: 297 DIISEVAPQSSRENIPRQNPIALDMHLSAEELNVLAIMGKESVHIDTIASKTGLDVSTLL 356
Query: 66 LVLLELDLAGRLCHHPE 82
+ L EL++ + HP
Sbjct: 357 VRLFELEMKRAVIQHPG 373
>gi|295096930|emb|CBK86020.1| DNA protecting protein DprA [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 379
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 317 KLLANVGDEVTPVDVVAERAGQPVPVTVAQLLELELAGWIAAVPGGYVRL 366
>gi|17544787|ref|NP_518189.1| SMF protein [Ralstonia solanacearum GMI1000]
gi|17427076|emb|CAD13596.1| putative smf protein (predicted rossmann fold nucleotide-binding
protein involved in dna uptake) [Ralstonia solanacearum
GMI1000]
Length = 401
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +L P+ +D + TG A + LL L+LAG + P G+
Sbjct: 351 LLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRF 397
>gi|172062106|ref|YP_001809758.1| DNA protecting protein DprA [Burkholderia ambifaria MC40-6]
gi|171994623|gb|ACB65542.1| DNA protecting protein DprA [Burkholderia ambifaria MC40-6]
Length = 422
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL-- 87
+ +L P+ + + H+G+ V++ LL L+LAGR+ G+ +
Sbjct: 348 PPDTPAERSVLAALGYGPVTYEWLAEHSGLSDDVLHSALLALELAGRVASVAGGRFARLD 407
Query: 88 -TMHLPS 93
H P
Sbjct: 408 AARHPPP 414
>gi|34499722|ref|NP_903937.1| smf protein [Chromobacterium violaceum ATCC 12472]
gi|34105573|gb|AAQ61927.1| smf protein [Chromobacterium violaceum ATCC 12472]
Length = 359
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E + S+ P+ D + G+ VY +LLEL+LAGR+ P G+
Sbjct: 300 EEPETPPLLNSMGWEPVLADALAGTLGLTPGEVYAMLLELELAGRVASLPGGRFQR 355
>gi|254483307|ref|ZP_05096538.1| DNA protecting protein DprA [marine gamma proteobacterium HTCC2148]
gi|214036402|gb|EEB77078.1| DNA protecting protein DprA [marine gamma proteobacterium HTCC2148]
Length = 301
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
++ PE + + + L I +D ++ +G+ V L L+LAGR
Sbjct: 230 QQELSQVSTIPSPESISEQDCLLLELLGFEVISLDQLVVASGLPVGQVMGELSSLELAGR 289
Query: 77 LCHHPEGKVS 86
+ P G +
Sbjct: 290 VNRCPGGYIR 299
>gi|83945523|ref|ZP_00957870.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
gi|83851099|gb|EAP88957.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
Length = 372
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 31/86 (36%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + + E R RI L+ P+ D++ T
Sbjct: 285 ILSGARRPKLEEPSGADFEDEFEDARALDEAVSDIRERIAGLLSPTPVSRDELARLTRAP 344
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
A VV L+EL+LAGR P G V
Sbjct: 345 ARVVLAALVELELAGRCEIWPNGMVC 370
>gi|147677580|ref|YP_001211795.1| Rossmann fold nucleotide-binding protein [Pelotomaculum
thermopropionicum SI]
gi|146273677|dbj|BAF59426.1| predicted Rossmann fold nucleotide-binding protein [Pelotomaculum
thermopropionicum SI]
Length = 367
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ E + L+ P+ +D+II +G+ L+ L+L G P
Sbjct: 296 KKDEPGEAVKMSREEEAVYSLLSVDPVPLDEIIGRSGLTPQKAMAALMYLELKGLARQMP 355
Query: 82 EGKVSLT 88
+ T
Sbjct: 356 GKFYTRT 362
>gi|322831107|ref|YP_004211134.1| DNA protecting protein DprA [Rahnella sp. Y9602]
gi|321166308|gb|ADW72007.1| DNA protecting protein DprA [Rahnella sp. Y9602]
Length = 389
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEA 61
P I+ + H+ + ++ E + ++ +D + G
Sbjct: 291 PNIKASESLKMPPDGHSDASEVNICAPDSEVELPFADVLANVEYEVTSVDVVAERAGQPV 350
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
P V LLEL+LAG + P G V +
Sbjct: 351 PEVVGKLLELELAGWIAAVPGGYVRI 376
>gi|299068357|emb|CBJ39581.1| putative smf, DNA processing chain A (drpA) [Ralstonia solanacearum
CMR15]
Length = 401
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +L P+ +D + TG A + LL L+LAG + P G+
Sbjct: 351 LLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRF 397
>gi|307728141|ref|YP_003905365.1| DNA protecting protein DprA [Burkholderia sp. CCGE1003]
gi|307582676|gb|ADN56074.1| DNA protecting protein DprA [Burkholderia sp. CCGE1003]
Length = 433
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYT---QCERVRIKQSLNNVPIHIDDIIHHTGI 59
P+ S++ + T T + + R+ +L + P ++ + T +
Sbjct: 338 EPECGAQLPSTEPAPAEARRPVATVATVATVAFEPDAQRLLAALGHAPTSLEILATRTEM 397
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ V+ LL+L+LAG + P G+ +
Sbjct: 398 DYAVLQATLLQLELAGHVSALPGGRYAR 425
>gi|91791395|ref|YP_561046.1| DNA processing protein DprA, putative [Shewanella denitrificans
OS217]
gi|91713397|gb|ABE53323.1| DNA processing protein DprA, putative [Shewanella denitrificans
OS217]
Length = 362
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V + +LEL+L G + P G V L
Sbjct: 310 PLLASVGYETTSIDAVVEHSGKTIDLVLVQMLELELQGWVAAVPGGYVRL 359
>gi|198282166|ref|YP_002218487.1| DNA protecting protein DprA [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666611|ref|YP_002424531.1| DNA processing protein DprA, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198246687|gb|ACH82280.1| DNA protecting protein DprA [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518824|gb|ACK79410.1| DNA processing protein DprA, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 365
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 29/68 (42%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + + + R+ +++ P+ + I + G+ + +LL+++L G L
Sbjct: 293 AQAMAPAADWQPEDPAQARVWAAMDFDPLAPEQIANRCGLTLTELSAILLDMELQGYLAA 352
Query: 80 HPEGKVSL 87
P G+
Sbjct: 353 CPGGRFCR 360
>gi|255531337|ref|YP_003091709.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
gi|255344321|gb|ACU03647.1| DNA protecting protein DprA [Pedobacter heparinus DSM 2366]
Length = 363
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 22/60 (36%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P E +I L PI ID+I + + LL L++ G L P L
Sbjct: 304 PVGLSDEEQKIVNILTATPIGIDEIGQQLNFSQSKLAMHLLSLEMQGILVALPGKFYKLN 363
>gi|258514507|ref|YP_003190729.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
gi|257778212|gb|ACV62106.1| DNA protecting protein DprA [Desulfotomaculum acetoxidans DSM 771]
Length = 366
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 29/79 (36%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ T T+ + + ++ P+H D+I+ + + A V L
Sbjct: 282 DILDELGITTLFPVEESTNASVALNRDEETVFGLISVNPVHFDEIVDKSNLPAQKVLASL 341
Query: 69 LELDLAGRLCHHPEGKVSL 87
+ L+L + P + +L
Sbjct: 342 MFLELKNLVRQLPGRQYAL 360
>gi|114561214|ref|YP_748727.1| DNA protecting protein DprA [Shewanella frigidimarina NCIMB 400]
gi|114332507|gb|ABI69889.1| DNA protecting protein DprA [Shewanella frigidimarina NCIMB 400]
Length = 338
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+H ++ +++ P + S+ ID ++ +G +V + +LEL+L G
Sbjct: 271 RHHIQDNDVSDLPFPP------LLASVGYETTAIDSVVEDSGKPIDLVLIQMLELELQGW 324
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 325 VAAVPGGYVRL 335
>gi|90019672|ref|YP_525499.1| filamentous hemagglutinin-like protein [Saccharophagus degradans
2-40]
gi|89949272|gb|ABD79287.1| DNA processing protein DprA, putative [Saccharophagus degradans
2-40]
Length = 399
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 23/69 (33%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+N H + L+ P ID + T V LL ++L G +
Sbjct: 330 PAENSLPKHDELIANDLEDDVLAKLDYSPTPIDALAERTKKPIGEVMSCLLTMELKGLVA 389
Query: 79 HHPEGKVSL 87
+ G + L
Sbjct: 390 NLGAGYMRL 398
>gi|190576009|ref|YP_001973854.1| putative Smf protein [Stenotrophomonas maltophilia K279a]
gi|190013931|emb|CAQ47571.1| putative Smf protein [Stenotrophomonas maltophilia K279a]
Length = 375
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 1 MVHPQIEQNFFSSQSD-TNHTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ P + Q QS T+ P + + ++L++ P +D +I
Sbjct: 285 LLAPALRQQLPGLQSRLGTPTEQAPPALLPARWADDPDYQCLWRALDHDPSSMDSLITRC 344
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGK 84
G+ AP V +LL ++LAG +
Sbjct: 345 GLTAPQVSSMLLAMELAGIVVCVHGRY 371
>gi|188535242|ref|YP_001909039.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Erwinia tasmaniensis Et1/99]
gi|188030284|emb|CAO98173.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Erwinia tasmaniensis Et1/99]
Length = 374
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
F+ ++ + + +P+ + ++ + +D + G P + L
Sbjct: 291 PVFAPVTNNSAGSSNPPLPFPD--------VLANVGDEVTPVDVVAERAGQPVPAIVAKL 342
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAG + P G V L
Sbjct: 343 LELELAGWIAAVPGGYVRL 361
>gi|238788877|ref|ZP_04632667.1| hypothetical protein yfred0001_26840 [Yersinia frederiksenii ATCC
33641]
gi|238722904|gb|EEQ14554.1| hypothetical protein yfred0001_26840 [Yersinia frederiksenii ATCC
33641]
Length = 373
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V L
Sbjct: 312 VLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAAVPGGYVRL 360
>gi|289209435|ref|YP_003461501.1| DNA protecting protein DprA [Thioalkalivibrio sp. K90mix]
gi|288945066|gb|ADC72765.1| DNA protecting protein DprA [Thioalkalivibrio sp. K90mix]
Length = 377
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T + E E+ R+ ++ PI ++ + T + + +L+ L+L G
Sbjct: 298 APGETASTPPEPAREPLDPEQERVLNAMGFDPIPLETLRDRTKLTIERLSSMLVLLELNG 357
Query: 76 RLCHHPEGKVSL 87
R+ G+
Sbjct: 358 RVAALDHGRYQR 369
>gi|213419663|ref|ZP_03352729.1| hypothetical protein Salmonentericaenterica_18473 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 145
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 61 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 114
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 115 ELELAGWIAAVPGGYVRL 132
>gi|54310615|ref|YP_131635.1| putative Smf protein [Photobacterium profundum SS9]
gi|46915058|emb|CAG21833.1| Hypothetical Smf protein [Photobacterium profundum SS9]
Length = 365
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
PE + + ++ I +D + + V + LL+L+L G + P G +
Sbjct: 302 PQPENEELPFSAVLATVGKEAIPVDVVAERCKLPIHEVMMQLLDLELQGVVSTVPGGYIR 361
>gi|16329968|ref|NP_440696.1| hypothetical protein slr1197 [Synechocystis sp. PCC 6803]
gi|3914979|sp|P73345|SMF_SYNY3 RecName: Full=Protein smf
gi|1652454|dbj|BAA17376.1| slr1197 [Synechocystis sp. PCC 6803]
Length = 398
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
T +T PE + +I ++ P +D I+ T + V LL+L+
Sbjct: 323 PTLTTGARGKQPLTEPPEDLEPTLKKILAAVQEEPTALDQIVAVTALAIGDVSAGLLQLE 382
Query: 73 LAGRLCHHPEGKVSL 87
+ G + P +
Sbjct: 383 ILGLVSQEPGMRYQR 397
>gi|90413781|ref|ZP_01221769.1| Hypothetical Smf protein [Photobacterium profundum 3TCK]
gi|90325250|gb|EAS41747.1| Hypothetical Smf protein [Photobacterium profundum 3TCK]
Length = 364
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
PE + + ++ I +D + + V + LL+L+L G + P G +
Sbjct: 301 PQPENEELPFSAVLATVGKEAIPVDVVAERCKLPIHEVMMQLLDLELQGVVSTVPGGYIR 360
>gi|195941055|ref|ZP_03086437.1| hypothetical protein EscherichcoliO157_32466 [Escherichia coli
O157:H7 str. EC4024]
Length = 246
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 184 KLLANVGDEVTPVDVVAERAGQPVPVTVAQLLELELAGWIAAVPGGYVRL 233
>gi|325518085|gb|EGC97880.1| SMF protein [Burkholderia sp. TJI49]
Length = 116
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ +L P+ + + H+G+ ++ LL L+LAG + P G+ + +
Sbjct: 44 DNPTEQAVLAALGYGPVTYEWLAEHSGLPDDDLHRALLALELAGHVAPLPGGRFARLDAV 103
Query: 92 PSP 94
P+P
Sbjct: 104 PTP 106
>gi|152980408|ref|YP_001351831.1| DNA processing protein [Janthinobacterium sp. Marseille]
gi|151280485|gb|ABR88895.1| DNA processing protein [Janthinobacterium sp. Marseille]
Length = 371
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 18/67 (26%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ S+ + D + ++ ++ LL L+L G
Sbjct: 303 PAAPGERATPPADAPYAHVLHSMGYDAVDADTLAQRCQLDIAEIHTHLLTLELDGHTEIL 362
Query: 81 PEGKVSL 87
P G
Sbjct: 363 PGGLYRR 369
>gi|323140195|ref|ZP_08075173.1| SMF family protein [Methylocystis sp. ATCC 49242]
gi|322394547|gb|EFX97170.1| SMF family protein [Methylocystis sp. ATCC 49242]
Length = 207
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRI-------KQSLNNVPIHIDDIIHHTGI 59
E+ S + T P+ + R+ L P+ +D++I G+
Sbjct: 114 EEGPPSPLFAAPEPELGPETASPDPSAPVHGRVADPHEVVLSLLGPSPVAVDELIRIAGL 173
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSL 87
A V+ VL+ELDLAGRL H VSL
Sbjct: 174 PARDVHGVLVELDLAGRLERHGTNAVSL 201
>gi|59713148|ref|YP_205924.1| DNA processing protein DprA [Vibrio fischeri ES114]
gi|59481249|gb|AAW87036.1| DNA processing protein DprA (Smf), possibly competence-related
[Vibrio fischeri ES114]
Length = 369
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ +D I + + + LLEL+L G + P G +
Sbjct: 317 EVFATVGGEATPVDIIAERCQMPVHEIMMQLLELELQGFIAAVPGGYIK 365
>gi|238752656|ref|ZP_04614127.1| DNA protecting protein DprA [Yersinia rohdei ATCC 43380]
gi|238709083|gb|EEQ01330.1| DNA protecting protein DprA [Yersinia rohdei ATCC 43380]
Length = 373
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V L
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWIAAVPGGYVRL 360
>gi|33599233|ref|NP_886793.1| hypothetical protein BB0244 [Bordetella bronchiseptica RB50]
gi|33575279|emb|CAE30742.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 370
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L P+H+D + TG++A + LLEL+L GR+ G+
Sbjct: 320 LLDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGRFQR 368
>gi|192360468|ref|YP_001984037.1| smf protein [Cellvibrio japonicus Ueda107]
gi|190686633|gb|ACE84311.1| smf protein [Cellvibrio japonicus Ueda107]
Length = 387
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 35/81 (43%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+Q S+ + ++ +++ P++ID ++ T ++A ++
Sbjct: 304 QQLQRSAVKQVQPLPTASTNMPLAELDPAATQLLEAMGYDPVNIDTLVERTSLDAGIIAA 363
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
L+ L+L+G +C G + +
Sbjct: 364 QLVSLELSGAICTIAGGYLRV 384
>gi|283788079|ref|YP_003367944.1| hypothetical protein ROD_45361 [Citrobacter rodentium ICC168]
gi|282951533|emb|CBG91232.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 374
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P LLEL+LAG
Sbjct: 291 PDDPANRLNSPQQEATALPFPELLANVGDEVTPVDVVAERAGQPVPETVAQLLELELAGW 350
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 351 IAAVPGGYVRL 361
>gi|254477402|ref|ZP_05090788.1| DNA protecting protein DprA [Ruegeria sp. R11]
gi|214031645|gb|EEB72480.1| DNA protecting protein DprA [Ruegeria sp. R11]
Length = 362
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 32/83 (38%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
HP + ++ + + + + T I L P+ D ++ + A
Sbjct: 273 HPASLPDVTNTTAPPDLPPPPSEQRSLQETAALHQEILDRLGPSPLTEDQLLRDLSLAAK 332
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
+ VL +L+L+G + P G +
Sbjct: 333 DLSPVLTDLELSGDITRQPGGML 355
>gi|332976751|gb|EGK13582.1| DNA processing protein DprA [Desmospora sp. 8437]
Length = 396
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + Q + + L P+ +D + + + ++ LL+L +
Sbjct: 324 PQPEAPLREGPLPGT--ELQPQEQALLDLLGEEPLTVDSLADRSDLPLGELHRQLLQLQV 381
Query: 74 AGRLCHHPE 82
G + P
Sbjct: 382 KGWVRQLPG 390
>gi|307132805|ref|YP_003884821.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Dickeya dadantii 3937]
gi|306530334|gb|ADN00265.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Dickeya dadantii 3937]
Length = 377
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 16 DTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ I + E + ++ + +D + G P V LL+L+L
Sbjct: 291 ADIPGEGIPEIICAAEGELELPFADVLATVGDEVTPVDVVAERAGQPVPEVVSKLLDLEL 350
Query: 74 AGRLCHHPEGKVSL 87
AG + P G V +
Sbjct: 351 AGWIAAVPGGYVRI 364
>gi|56697910|ref|YP_168281.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
gi|56679647|gb|AAV96313.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
Length = 382
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ PQ + + ++ I L P+ D +I
Sbjct: 298 LTAPQPQPDLCDLMQQPAPPAKRSLRETV----ALHSLILDRLGPSPVAEDQLIRDLAAS 353
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
V VL++L+L GR+ G +S
Sbjct: 354 PGEVAPVLVDLELEGRINRQAGGLLSR 380
>gi|289432565|ref|YP_003462438.1| DNA protecting protein DprA [Dehalococcoides sp. GT]
gi|288946285|gb|ADC73982.1| DNA protecting protein DprA [Dehalococcoides sp. GT]
Length = 373
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 21/70 (30%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
N T I L P+HID I + +V L ++L G++
Sbjct: 294 SEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGTLAIMELKGQVRST 353
Query: 81 PEGKVSLTMH 90
T
Sbjct: 354 GGMNYVRTRE 363
>gi|73748517|ref|YP_307756.1| putative DNA processing protein DprA [Dehalococcoides sp. CBDB1]
gi|73660233|emb|CAI82840.1| putative DNA processing protein DprA [Dehalococcoides sp. CBDB1]
Length = 383
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 21/70 (30%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
N T I L P+HID I + +V L ++L G++
Sbjct: 304 SEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGTLAIMELKGQVRST 363
Query: 81 PEGKVSLTMH 90
T
Sbjct: 364 GGMNYVRTRE 373
>gi|33594956|ref|NP_882599.1| hypothetical protein BPP0240 [Bordetella parapertussis 12822]
gi|33565032|emb|CAE39981.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 370
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L P+H+D + TG++A + LLEL+L GR+ G+
Sbjct: 320 LLDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGRFQR 368
>gi|33591759|ref|NP_879403.1| hypothetical protein BP0555 [Bordetella pertussis Tohama I]
gi|33571402|emb|CAE44883.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381176|gb|AEE66023.1| hypothetical protein BPTD_0564 [Bordetella pertussis CS]
Length = 370
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L P+H+D + TG++A + LLEL+L GR+ G+
Sbjct: 320 LLDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGRFQR 368
>gi|254784307|ref|YP_003071735.1| SMF protein [Teredinibacter turnerae T7901]
gi|237686231|gb|ACR13495.1| SMF protein [Teredinibacter turnerae T7901]
Length = 389
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E I + L ID+I T + V LL L+L G + + G + L
Sbjct: 321 ATEEESIILEQLGYESTPIDEIAERTELPVGDVMACLLTLELKGLVANVGTGYMRL 376
>gi|237746965|ref|ZP_04577445.1| DNA processing protein [Oxalobacter formigenes HOxBLS]
gi|229378316|gb|EEO28407.1| DNA processing protein [Oxalobacter formigenes HOxBLS]
Length = 373
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 27/85 (31%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ Q+ N + + I + P+ D + I+A +
Sbjct: 287 ETSQDVLEELKHYNSVSESSDRKMEPENTSLQEDILLQMGFDPVDSDTLCERCEIDAASL 346
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
+ LL L+LAG + G +
Sbjct: 347 NVELLSLELAGEVESLAGGFYRRLV 371
>gi|332711096|ref|ZP_08431030.1| DNA protecting protein DprA [Lyngbya majuscula 3L]
gi|332350078|gb|EGJ29684.1| DNA protecting protein DprA [Lyngbya majuscula 3L]
Length = 377
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 13 SQSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ D + + P + ++ ++ P D I+ +EA V LL+L
Sbjct: 298 PELDPHSALEQPLPALPVPTLEPALAKVLDAIAFEPTSFDIIVQQAALEAGSVSSALLQL 357
Query: 72 DLAGRLCHHPEGKVSL 87
+L G + P +
Sbjct: 358 ELMGLVSQAPGMRYRR 373
>gi|156740191|ref|YP_001430320.1| DNA protecting protein DprA [Roseiflexus castenholzii DSM 13941]
gi|156231519|gb|ABU56302.1| DNA protecting protein DprA [Roseiflexus castenholzii DSM 13941]
Length = 360
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 20/69 (28%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + + P+HIDD+ T + V L L+L G +
Sbjct: 291 AASQQEVRTALPDDPVEAAVLALVGYEPLHIDDLQRRTSMPVYEVSAALAVLELKGFVRQ 350
Query: 80 HPEGKVSLT 88
L
Sbjct: 351 SAPMCYVLA 359
>gi|147669298|ref|YP_001214116.1| DNA protecting protein DprA [Dehalococcoides sp. BAV1]
gi|146270246|gb|ABQ17238.1| DNA protecting protein DprA [Dehalococcoides sp. BAV1]
Length = 373
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 21/70 (30%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
N T I L P+HID I + +V L ++L G++
Sbjct: 294 SEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGTLAIMELKGQVRST 353
Query: 81 PEGKVSLTMH 90
T
Sbjct: 354 GGMNYVRTRE 363
>gi|257091702|ref|YP_003165343.1| DNA protecting protein DprA [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044226|gb|ACV33414.1| DNA protecting protein DprA [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 363
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + E + ++ P +D++ +G+ A V ++LL L+L G++
Sbjct: 292 SAPADRPASATADAAEAGSLLLAMGFDPCSLDELTQRSGLTADAVSVILLHLELDGQVAC 351
Query: 80 HPEGKVSL 87
P G
Sbjct: 352 LPGGHYQR 359
>gi|124265474|ref|YP_001019478.1| putative SMF protein [Methylibium petroleiphilum PM1]
gi|124258249|gb|ABM93243.1| putative SMF protein [Methylibium petroleiphilum PM1]
Length = 365
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ T P + +L + P+ +D + G + LL L+L+G
Sbjct: 295 DAPDRPSPTTSSPSVEDP----VLAALGHDPVTLDALSARIGWPPAELSARLLALELSGD 350
Query: 77 LCHHPEGKVSLTMHL 91
+ P +
Sbjct: 351 VVRLPGQLFQRLVQA 365
>gi|218440245|ref|YP_002378574.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424]
gi|218172973|gb|ACK71706.1| DNA protecting protein DprA [Cyanothece sp. PCC 7424]
Length = 374
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 26/63 (41%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + + ++ +++ D I+ TG+ V +LL+L+L G + P +
Sbjct: 311 SSKPTPQLEPQLAQVFEAVGIEATPFDLIVQQTGLSTGEVSGILLQLELLGIVSQLPGMR 370
Query: 85 VSL 87
Sbjct: 371 YQR 373
>gi|296133059|ref|YP_003640306.1| transcriptional regulator, MarR family [Thermincola sp. JR]
gi|296031637|gb|ADG82405.1| transcriptional regulator, MarR family [Thermincola potens JR]
Length = 359
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ RI L P++I++I+ G+ V L L+L G +
Sbjct: 291 RGRQEKREEFDLNPAEQRILACLTLEPVNIEEIVEKAGMNPAEVSAALTFLELKGLVKRI 350
Query: 81 PEGKV 85
Sbjct: 351 DGQLF 355
>gi|74316030|ref|YP_313770.1| SMF protein [Thiobacillus denitrificans ATCC 25259]
gi|74055525|gb|AAZ95965.1| SMF protein [Thiobacillus denitrificans ATCC 25259]
Length = 320
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ P + E + +L+ P +D + TG+ + LL L+L GR+
Sbjct: 249 DELAWQQRLSPPVLPESEPDPVLDALDGAPTTLDSLAQKTGLTLDALSAKLLALELDGRI 308
Query: 78 CHHPEGKV 85
P G+
Sbjct: 309 AALPGGRY 316
>gi|160934426|ref|ZP_02081813.1| hypothetical protein CLOLEP_03299 [Clostridium leptum DSM 753]
gi|156867099|gb|EDO60471.1| hypothetical protein CLOLEP_03299 [Clostridium leptum DSM 753]
Length = 396
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 30/79 (37%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
QN + E V++ Q+++ P ++D + G+ A
Sbjct: 315 QNPLRPPNHRTELPKAPPAIREEELSACAVKLYQAMSWEPAYLDILAEEAGLSAAQALQA 374
Query: 68 LLELDLAGRLCHHPEGKVS 86
+ EL+L+G + + + +
Sbjct: 375 VTELELSGIIQSYSGRRYA 393
>gi|193213418|ref|YP_001999371.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327]
gi|193086895|gb|ACF12171.1| DNA protecting protein DprA [Chlorobaculum parvum NCIB 8327]
Length = 387
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 27/80 (33%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + E RI +++ IHID I TGI + +
Sbjct: 302 SELPPAAFLPTAGRQDVDKPSLPALTPEESRIIEAIEKEAIHIDLIAEKTGIPIEQLLVH 361
Query: 68 LLELDLAGRLCHHPEGKVSL 87
L EL++ + P S+
Sbjct: 362 LFELEMNRIVLQEPGQLFSI 381
>gi|194367359|ref|YP_002029969.1| DNA protecting protein DprA [Stenotrophomonas maltophilia R551-3]
gi|194350163|gb|ACF53286.1| DNA protecting protein DprA [Stenotrophomonas maltophilia R551-3]
Length = 375
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 1 MVHPQIEQNFFSSQSDTN-HTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ P + Q QS T+ P + + ++L++ P +D +I
Sbjct: 285 LLAPALRQQLPGLQSRLATPTEQAPPALLPARWADDPDYQCLWRALDHNPSGMDSLITRC 344
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGK 84
G+ A V +LL ++LAG +
Sbjct: 345 GLTASQVSSMLLAMELAGIVVCVHGRY 371
>gi|253700153|ref|YP_003021342.1| DNA protecting protein DprA [Geobacter sp. M21]
gi|251775003|gb|ACT17584.1| DNA protecting protein DprA [Geobacter sp. M21]
Length = 359
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 26/81 (32%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
++ + + L + IDDII + + A V
Sbjct: 279 EDILEELGLEPQANLPLPKPSSFELTPQEAELYALLCQGALQIDDIIVQSALTASEVSAT 338
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
LL L++ G + P + ++
Sbjct: 339 LLRLEMKGAIVQLPGKRFAVA 359
>gi|300770008|ref|ZP_07079887.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762484|gb|EFK59301.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33861]
Length = 370
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 7 EQNFFSSQSDTNHTKNINIT---HYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAP 62
+ F + + P E+ +I Q L P ID+I H +
Sbjct: 280 ASDLFYMMNWEQEQQQKPSAQLSLLPPQLSEEQEKIYQFLQQQNPAPIDEIAIHCALPQS 339
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
+ + LLEL++ G + P L
Sbjct: 340 QLAISLLELEMEGIILSMPGKVYKL 364
>gi|300705528|ref|YP_003747131.1| smf, DNA processing chain a (drpa) [Ralstonia solanacearum
CFBP2957]
gi|299073192|emb|CBJ44550.1| putative smf, DNA processing chain A (drpA) [Ralstonia solanacearum
CFBP2957]
Length = 403
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +L P+ +D + TG A + LL L+L GR+ G+
Sbjct: 353 LLDALGFDPVDLDTLCQRTGQTAAPLSAQLLALELEGRIERLAGGRF 399
>gi|309780260|ref|ZP_07675011.1| SMF family protein [Ralstonia sp. 5_7_47FAA]
gi|308920963|gb|EFP66609.1| SMF family protein [Ralstonia sp. 5_7_47FAA]
Length = 401
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +L P+ +D + TG A + LL L+L R+ P G+
Sbjct: 348 ETALLGALGFDPVDLDTLCERTGQAAAALSSQLLALELDSRVERQPGGRF 397
>gi|303240294|ref|ZP_07326813.1| DNA protecting protein DprA [Acetivibrio cellulolyticus CD2]
gi|302592204|gb|EFL61933.1| DNA protecting protein DprA [Acetivibrio cellulolyticus CD2]
Length = 369
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
V+I + L P HID I + TG+ V+ V++ L+L G + P L +
Sbjct: 316 EVKIVECLKLEPTHIDIIANKTGLNIKVINSVIVMLELKGLVEQLPGKVYKLKL 369
>gi|320161003|ref|YP_004174227.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
gi|319994856|dbj|BAJ63627.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
Length = 370
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 25/77 (32%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P + + +I ++L P+HID+I +
Sbjct: 276 PLLSAEEILEDLHLSRVSEKQTAKKVLPADPLEEKILKALEQQPLHIDEISIAIDLPVEQ 335
Query: 64 VYLVLLELDLAGRLCHH 80
V +L ++L G + H
Sbjct: 336 VSAILTFMELKGLVRHL 352
>gi|206890890|ref|YP_002248891.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742828|gb|ACI21885.1| DNA processing protein DprA [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 368
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E F T+ N T + + + LN P+++D+II TG+ V
Sbjct: 286 LEEIEQFIPLLKKITTELSNETTKTDRLDNDEKIVFNILN-EPLYLDEIILKTGMNTAKV 344
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+LL L++ G + V
Sbjct: 345 LEILLSLEIDGLINKIEGKYVRR 367
>gi|259909965|ref|YP_002650321.1| DNA protecting protein [Erwinia pyrifoliae Ep1/96]
gi|224965587|emb|CAX57119.1| DNA protecting protein [Erwinia pyrifoliae Ep1/96]
gi|283480065|emb|CAY75981.1| Protein smf [Erwinia pyrifoliae DSM 12163]
Length = 374
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ ++ + N +P+ + ++ + +D + G P + L
Sbjct: 291 PVLTPLTNNSDAGNNPPLPFPD--------VLANVGDEVTPVDVVAERAGQPVPAIVAKL 342
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAG + P G V L
Sbjct: 343 LELELAGWIAAVPGGYVRL 361
>gi|119509167|ref|ZP_01628318.1| SMF protein [Nodularia spumigena CCY9414]
gi|119466333|gb|EAW47219.1| SMF protein [Nodularia spumigena CCY9414]
Length = 372
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ DT T I E ++ ++ + + D ++ TG+ V LL+L+
Sbjct: 297 PKIDTIDTPPIPEQLNLPKLSSELQQVMDAIASDVLPFDYLVQKTGMNTGSVSSALLQLE 356
Query: 73 LAGRLCHHPEGKV 85
L G + P +
Sbjct: 357 LMGLVSQLPGMRY 369
>gi|212213457|ref|YP_002304393.1| DNA processing protein [Coxiella burnetii CbuG_Q212]
gi|212011867|gb|ACJ19248.1| DNA processing protein [Coxiella burnetii CbuG_Q212]
Length = 308
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + ++ + + ID +I +G A +V +LL ++L G +
Sbjct: 241 EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKST 300
Query: 81 PEGKVSL 87
P G + +
Sbjct: 301 PGGVIRV 307
>gi|94266973|ref|ZP_01290622.1| SMF protein [delta proteobacterium MLMS-1]
gi|93452328|gb|EAT02959.1| SMF protein [delta proteobacterium MLMS-1]
Length = 381
Score = 61.8 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + + + I T E + +L+ P I++II +
Sbjct: 293 LASPLTARFLPAKPAAASSAAAITTTPEATPANAEEQALLATLDGYPRDIEEIIAACRLP 352
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
AP V +LLEL++ G + P +
Sbjct: 353 APKVNALLLELEIRGLVESAPGPQYRRA 380
>gi|310765563|gb|ADP10513.1| DNA protecting protein [Erwinia sp. Ejp617]
Length = 374
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ ++ + N +P+ + ++ + +D + G P + L
Sbjct: 291 PVLTPLTNNSDAGNNPPLPFPD--------VLANVGDEVTPVDVVAERAGQPVPAIVAKL 342
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAG + P G V L
Sbjct: 343 LELELAGWIAAVPGGYVRL 361
>gi|197333945|ref|YP_002157324.1| protein smf (DNA-processing chain A) [Vibrio fischeri MJ11]
gi|197315435|gb|ACH64882.1| protein smf (DNA-processing chain A) [Vibrio fischeri MJ11]
Length = 345
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ +D I + + + LLEL+L G + P G +
Sbjct: 293 EVFATVGGEATPVDIIAERCQMPVHEIMMQLLELELQGFIAAVPGGYIK 341
>gi|145220350|ref|YP_001131059.1| DNA protecting protein DprA [Prosthecochloris vibrioformis DSM 265]
gi|145206514|gb|ABP37557.1| DNA protecting protein DprA [Chlorobium phaeovibrioides DSM 265]
Length = 291
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T E + +++ PIHID++ +GI+ + L+L +L++
Sbjct: 217 TRPGATAETRRPAAPFSAEESALLKAMGEEPIHIDELAQKSGIDYAGLLLLLFDLEMKSA 276
Query: 77 LCHHPEGKVSLT 88
+ P T
Sbjct: 277 IEQQPGQFFQRT 288
>gi|148978495|ref|ZP_01814969.1| Smf protein [Vibrionales bacterium SWAT-3]
gi|145962402|gb|EDK27682.1| Smf protein [Vibrionales bacterium SWAT-3]
Length = 370
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ N F + + H + ++ +D + T I V +
Sbjct: 298 QPNLFEPTPSLEENEQLPFPH-----------LLANVGLEATPVDILAQRTHIPVHEVMM 346
Query: 67 VLLELDLAGRLCHHPEGKVS 86
LLEL+L+G + G +
Sbjct: 347 QLLELELSGHVVAVSGGYIR 366
>gi|82701529|ref|YP_411095.1| DNA processing protein DprA, putative [Nitrosospira multiformis
ATCC 25196]
gi|82409594|gb|ABB73703.1| DNA protecting protein DprA [Nitrosospira multiformis ATCC 25196]
Length = 372
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 25 ITHYPEYTQCERVR--IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
PE + R + + L++ I +D + +G+ V +LL L+L G + P
Sbjct: 306 PILVPEGGEAAREEFLLLKHLSHDIIDVDTLCLRSGLTVETVSAMLLTLELDGIIASLPG 365
Query: 83 GKVSL 87
G+
Sbjct: 366 GRYQR 370
>gi|83642945|ref|YP_431380.1| DNA uptake Rossmann fold nucleotide-binding protein [Hahella
chejuensis KCTC 2396]
gi|83630988|gb|ABC26955.1| predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Hahella chejuensis KCTC 2396]
Length = 389
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 26/74 (35%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + ++ + + + + D ++ TG+ + VL+EL+
Sbjct: 313 AAEEFPGQQSQPEPASLRPLSEQAEAVLKGMGYDCTPPDALVERTGLSIAEIRSVLIELE 372
Query: 73 LAGRLCHHPEGKVS 86
L G + G +
Sbjct: 373 LEGWVQEVAGGFIR 386
>gi|213621787|ref|ZP_03374570.1| hypothetical protein SentesTyp_31382 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 177
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
++ ++ ++ N + P + ++ + +D + G P V LL
Sbjct: 93 LPTTAENSLYSLNQDEAALPFP------ELLANVGDEVTPVDVVAERAGQPVPAVVAQLL 146
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V L
Sbjct: 147 ELELAGWIAAVPGGYVRL 164
>gi|164685831|ref|ZP_01945729.2| DNA protecting protein DprA [Coxiella burnetii 'MSU Goat Q177']
gi|165918185|ref|ZP_02218271.1| DNA protecting protein DprA [Coxiella burnetii RSA 334]
gi|164601347|gb|EAX33608.2| DNA protecting protein DprA [Coxiella burnetii 'MSU Goat Q177']
gi|165918045|gb|EDR36649.1| DNA protecting protein DprA [Coxiella burnetii RSA 334]
Length = 296
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + ++ + + ID +I +G A +V +LL ++L G +
Sbjct: 229 EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKST 288
Query: 81 PEGKVSL 87
P G + +
Sbjct: 289 PGGVIRV 295
>gi|311277760|ref|YP_003939991.1| DNA protecting protein DprA [Enterobacter cloacae SCF1]
gi|308746955|gb|ADO46707.1| DNA protecting protein DprA [Enterobacter cloacae SCF1]
Length = 374
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P LLEL+LAG + P G V L
Sbjct: 312 ALLANVGDEVTPVDVVAERAGQPVPETVAQLLELELAGWIAAVPGGYVRL 361
>gi|271502212|ref|YP_003335238.1| DNA protecting protein DprA [Dickeya dadantii Ech586]
gi|270345767|gb|ACZ78532.1| DNA protecting protein DprA [Dickeya dadantii Ech586]
Length = 377
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P V LL+L+LAG + P G V +
Sbjct: 314 ADVLATVGDEVTPVDVVAERAGQPVPEVVSKLLDLELAGWIAAVPGGYVRI 364
>gi|154247839|ref|YP_001418797.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
gi|154161924|gb|ABS69140.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
Length = 378
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 34/79 (43%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
Q I + R R+ L VP IDD++ +G V +VL
Sbjct: 299 PMAGRQGPDAIEAESPIMEPAMPGEDARARVVGLLGPVPTLIDDLVRLSGCSVAEVQIVL 358
Query: 69 LELDLAGRLCHHPEGKVSL 87
LELDLAGRL G+V+L
Sbjct: 359 LELDLAGRLDRPGTGRVAL 377
>gi|209693701|ref|YP_002261629.1| Smf protein [Aliivibrio salmonicida LFI1238]
gi|208007652|emb|CAQ77762.1| Smf protein [Aliivibrio salmonicida LFI1238]
Length = 369
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ +D I + + LLEL+L G + P G +
Sbjct: 317 KVFATVGIEATPVDIIAERCQTPVHEIMMQLLELELQGFITAVPGGYIK 365
>gi|212219505|ref|YP_002306292.1| DNA processing protein [Coxiella burnetii CbuK_Q154]
gi|212013767|gb|ACJ21147.1| DNA processing protein [Coxiella burnetii CbuK_Q154]
Length = 308
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + ++ + + ID +I +G A +V +LL ++L G +
Sbjct: 241 EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKST 300
Query: 81 PEGKVSL 87
P G + +
Sbjct: 301 PGGVIRV 307
>gi|332881647|ref|ZP_08449295.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680286|gb|EGJ53235.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 373
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVV 64
+E + +S N E RI L + + I+ + T + +
Sbjct: 290 MEAMGWQPRSSENQKDKGIQGELFPDLCEEEQRIVDCLRQSECLQINTLAVATNLPVHKL 349
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
L L++ G + G LT
Sbjct: 350 SAFLFNLEMKGIVKLLSGGMYRLT 373
>gi|254294345|ref|YP_003060368.1| DNA protecting protein DprA [Hirschia baltica ATCC 49814]
gi|254042876|gb|ACT59671.1| DNA protecting protein DprA [Hirschia baltica ATCC 49814]
Length = 373
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 26/79 (32%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+N + + + +L+ P HID+++ V
Sbjct: 291 ENSIPPMLAEPEAPTFETLSMIDVSLSTIQSLTMALSPTPTHIDELVRVVRAPLREVNAA 350
Query: 68 LLELDLAGRLCHHPEGKVS 86
L EL+L G H G VS
Sbjct: 351 LTELELDGIAQTHAGGYVS 369
>gi|94312498|ref|YP_585708.1| DNA processing protein DprA, putative [Cupriavidus metallidurans
CH34]
gi|93356350|gb|ABF10439.1| DNA processing protein (DprA/Smf type) [Cupriavidus metallidurans
CH34]
gi|222838659|gb|EEE77024.1| predicted protein [Populus trichocarpa]
Length = 371
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 28/83 (33%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + F D ++ P+ +L P+ D + +G+ +
Sbjct: 287 ETPADVFEEFGDPGGVASVAPVPVPDSAPVPGDPFGAALAYDPVTFDALCERSGLAPHMA 346
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+LLEL+L G + +
Sbjct: 347 AAMLLELELGGTVERMAGNRYRR 369
>gi|114462408|gb|ABI75144.1| SMF protein [Anabaena circinalis AWQC131C]
Length = 310
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 28/73 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D + + E +I L + D II TG+ A +V LL+L+
Sbjct: 235 PQIDIETETPLVKSPPIPNLAPELQQIINILAVDALSFDFIIQKTGMNAAIVSSSLLQLE 294
Query: 73 LAGRLCHHPEGKV 85
L G + P +
Sbjct: 295 LMGLVTQLPGMRY 307
>gi|325925738|ref|ZP_08187113.1| putative Rossmann fold nucleotide-binding protein involved in DNA
uptake [Xanthomonas perforans 91-118]
gi|325543866|gb|EGD15274.1| putative Rossmann fold nucleotide-binding protein involved in DNA
uptake [Xanthomonas perforans 91-118]
Length = 264
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 32/76 (42%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ ++ + P + + R+ Q+L + P +D ++ TG+ A + +LL
Sbjct: 187 LAAPTELPSKATTSAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTGLTAAALSSMLLI 246
Query: 71 LDLAGRLCHHPEGKVS 86
++L G +
Sbjct: 247 MELEGDVVTEHGRYTR 262
>gi|83589873|ref|YP_429882.1| DNA processing protein DprA, putative [Moorella thermoacetica ATCC
39073]
gi|83572787|gb|ABC19339.1| DNA protecting protein DprA [Moorella thermoacetica ATCC 39073]
Length = 361
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
T ++ L P H+D I+ TG+ A + L+ L++ + P
Sbjct: 295 PREETRASVTLNAIEEKVLAVLEATPSHLDVIMAATGLPAGELNTALIMLEMKQLIRRLP 354
Query: 82 EGKVSL 87
G
Sbjct: 355 GGFYVR 360
>gi|323179179|gb|EFZ64753.1| protein smf domain protein [Escherichia coli 1180]
Length = 140
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 57 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 116
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 117 IAAVPGGYVRL 127
>gi|255034029|ref|YP_003084650.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053]
gi|254946785|gb|ACT91485.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 20 TKNINITHYP---EYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+++ P E + ++ L + P ID++ TGI + +LL L+ G
Sbjct: 300 PESVPAEAQPVSFEGFTQDEGQVLALLKQHGPTQIDELAWQTGIHLNRLASLLLNLEFQG 359
Query: 76 RLCHHPEGKVSL 87
+ P K L
Sbjct: 360 MVRSMPGKKYGL 371
>gi|325677793|ref|ZP_08157435.1| putative DNA protecting protein DprA [Ruminococcus albus 8]
gi|324110347|gb|EGC04521.1| putative DNA protecting protein DprA [Ruminococcus albus 8]
Length = 370
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 20 TKNINITHYPEYT-QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
K P RI LN + +H+D++ G+ V L L++ G +
Sbjct: 300 AKRSPAKKTPAIDADSSEGRIFAELNEHGELHVDELAAKCGMGMAEVMAALTSLEIDGMV 359
Query: 78 CHHPEGKVSLT 88
P + ++
Sbjct: 360 KSLPGRRYVVS 370
>gi|292489812|ref|YP_003532702.1| protein Smf [Erwinia amylovora CFBP1430]
gi|292900854|ref|YP_003540223.1| hypothetical protein EAM_3161 [Erwinia amylovora ATCC 49946]
gi|291200702|emb|CBJ47835.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291555249|emb|CBA23520.1| Protein smf [Erwinia amylovora CFBP1430]
gi|312173995|emb|CBX82248.1| Protein smf [Erwinia amylovora ATCC BAA-2158]
Length = 374
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ ++ + N +P+ + ++ + +D + G P + L
Sbjct: 291 PVITPLTNNSGAGNNPPLPFPD--------VLANVGDEVTPVDVVAERAGQPVPAIVAKL 342
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LAG + P G V L
Sbjct: 343 LELELAGWIAAVPGGYVRL 361
>gi|296161361|ref|ZP_06844168.1| DNA protecting protein DprA [Burkholderia sp. Ch1-1]
gi|295888347|gb|EFG68158.1| DNA protecting protein DprA [Burkholderia sp. Ch1-1]
Length = 421
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 36/89 (40%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P+ ++ S + N E R+ +L + P ++ + T +E
Sbjct: 332 VRPKPATAQTAAASAADSATAPNPAPPRRPVDPEAERLLTALGHSPTTLEILATRTEMED 391
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ LL+L+LAG++ P G+ H
Sbjct: 392 AALQSTLLQLELAGQVTVLPGGRFMRASH 420
>gi|209364274|ref|YP_001425403.2| DNA processing protein [Coxiella burnetii Dugway 5J108-111]
gi|207082207|gb|ABS77073.2| DNA processing protein [Coxiella burnetii Dugway 5J108-111]
Length = 308
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + ++ + + ID +I +G A +V +LL ++L G +
Sbjct: 241 EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKST 300
Query: 81 PEGKVSL 87
P G + +
Sbjct: 301 PGGVIRV 307
>gi|264668112|gb|ACY71500.1| SMF protein [Anabaena circinalis AWQC310F]
Length = 208
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 28/73 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D + + E +I L + D II TG+ A +V LL+L+
Sbjct: 133 PQIDIETETPLVKSPPIPNLAPELQQIINILAIDALSFDFIIQKTGMNAAIVSSSLLQLE 192
Query: 73 LAGRLCHHPEGKV 85
L G + P +
Sbjct: 193 LMGLVTQLPGMRY 205
>gi|301058272|ref|ZP_07199312.1| DNA protecting protein DprA [delta proteobacterium NaphS2]
gi|300447606|gb|EFK11331.1| DNA protecting protein DprA [delta proteobacterium NaphS2]
Length = 369
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ +T + + + +++ + + N P+HID I ++A V +VL
Sbjct: 290 ELWFLTHETGTIDRNQKSLPSGHMEGVELKLYEIIGNYPMHIDQIARTGDMDAGQVAMVL 349
Query: 69 LELDLAGRLCHHPEGKVSL 87
L+++L G + P
Sbjct: 350 LKMELNGTVRQLPGKMYVR 368
>gi|332533675|ref|ZP_08409534.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Pseudoalteromonas haloplanktis ANT/505]
gi|332036839|gb|EGI73300.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Pseudoalteromonas haloplanktis ANT/505]
Length = 363
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + S+ +DDI+ V LL+L+L ++ +G + L
Sbjct: 300 EQPIQANSQCEVLNSIGFEVTSVDDIVRRAQWPIDKVLSRLLDLELDDQIERVLDGYIKL 359
Query: 88 T 88
+
Sbjct: 360 S 360
>gi|317494306|ref|ZP_07952720.1| DNA protecting protein DprA [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917556|gb|EFV38901.1| DNA protecting protein DprA [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 377
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 29 PEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
PE E + ++ +D + G P V + LL+L+LAG + G V
Sbjct: 304 PERDDVELPFADVLANVEYEVTSVDVVAERVGQPVPEVVVALLDLELAGWIKAVSGGYVR 363
Query: 87 L 87
L
Sbjct: 364 L 364
>gi|110633709|ref|YP_673917.1| DNA protecting protein DprA [Mesorhizobium sp. BNC1]
gi|110284693|gb|ABG62752.1| DNA protecting protein DprA [Chelativorans sp. BNC1]
Length = 378
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S + + +++ P+ + ER I Q+L P+ +D+IIHHTG+ A V LVLLELD
Sbjct: 299 PPSTADLEETPDLSATPDPGENERSLILQALGAAPVAVDEIIHHTGLPAAQVLLVLLELD 358
Query: 73 LAGRLCHHPEGKVSL 87
LAGRL H GKVSL
Sbjct: 359 LAGRLERHAGGKVSL 373
>gi|260752380|ref|YP_003225273.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258551743|gb|ACV74689.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 385
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQ---CERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E++ + I P + +R I+ + + + ++++I +G+E +
Sbjct: 300 EKSPLEPRFSGLENGQIGYRSSPAIAEVKAKDREIIQSLIGSASVGVNELIRQSGLENAI 359
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +LLE++LAGRL H G+VSL
Sbjct: 360 IQTILLEMELAGRLESHAGGRVSL 383
>gi|299531888|ref|ZP_07045288.1| DNA protecting protein DprA [Comamonas testosteroni S44]
gi|298720063|gb|EFI61020.1| DNA protecting protein DprA [Comamonas testosteroni S44]
Length = 397
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
Q + + + + Q+L + P+ ++ + TG +A +
Sbjct: 318 QGLKLASTRAEPAQEAAKNKASTPDNP----LLQALGHDPMTLESLSDRTGWDAAHLQAQ 373
Query: 68 LLELDLAGRLCHHPEGKVSLTM 89
L+EL+L G + P G
Sbjct: 374 LMELELDGLVARLPGGLYQRLT 395
>gi|162421290|ref|YP_001605209.1| protein smf [Yersinia pestis Angola]
gi|162354105|gb|ABX88053.1| protein smf [Yersinia pestis Angola]
Length = 133
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + I+ E + + ++ + +D + G + LLEL+LAG +
Sbjct: 53 PEEVIISSPQEQVELPFADVLANVGDEVTPVDVVAERAGQPVQDIASKLLELELAGWIAA 112
Query: 80 HPEGKVSL 87
P G V +
Sbjct: 113 VPGGYVRI 120
>gi|24371634|ref|NP_715676.1| DNA processing protein DprA, putative [Shewanella oneidensis MR-1]
gi|24345393|gb|AAN53121.1|AE015455_2 DNA processing protein DprA, putative [Shewanella oneidensis MR-1]
Length = 338
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTAIDAVVEHSGKTIDLVLEQMLELELQGWVVAVPGGYVRV 335
>gi|126172290|ref|YP_001048439.1| DNA protecting protein DprA [Shewanella baltica OS155]
gi|152998584|ref|YP_001364265.1| DNA protecting protein DprA [Shewanella baltica OS185]
gi|125995495|gb|ABN59570.1| DNA protecting protein DprA [Shewanella baltica OS155]
gi|151363202|gb|ABS06202.1| DNA protecting protein DprA [Shewanella baltica OS185]
Length = 338
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTSIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 335
>gi|161831372|ref|YP_001595979.1| DNA protecting protein DprA [Coxiella burnetii RSA 331]
gi|161763239|gb|ABX78881.1| DNA protecting protein DprA [Coxiella burnetii RSA 331]
Length = 296
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + ++ + + ID +I +G A +V +LL ++L G +
Sbjct: 229 EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSR 288
Query: 81 PEGKVSL 87
P G + +
Sbjct: 289 PGGVIRV 295
>gi|293393277|ref|ZP_06637591.1| DNA protecting protein DprA [Serratia odorifera DSM 4582]
gi|291424187|gb|EFE97402.1| DNA protecting protein DprA [Serratia odorifera DSM 4582]
Length = 373
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ I+ + + ++ + +D + G P V + LL+L+LAG +
Sbjct: 291 AMDEKTTISASEAEVELPFADVLANVGDEVTPVDVVAERAGQPVPEVVIQLLDLELAGWI 350
Query: 78 CHHPEGKVSL 87
P G V +
Sbjct: 351 AAVPGGYVRI 360
>gi|264680867|ref|YP_003280777.1| DNA protecting protein DprA [Comamonas testosteroni CNB-2]
gi|262211383|gb|ACY35481.1| DNA protecting protein DprA [Comamonas testosteroni CNB-2]
Length = 397
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
Q + + + + Q+L + P+ ++ + TG +A +
Sbjct: 318 QGLKLASTRAEPAQEAAKNKASTPDNP----LLQALGHDPMTLESLSDRTGWDAAHLQAQ 373
Query: 68 LLELDLAGRLCHHPEGKVSLTM 89
L+EL+L G + P G
Sbjct: 374 LMELELDGLVARLPGGLYQRLT 395
>gi|270264339|ref|ZP_06192605.1| DNA protecting protein DprA [Serratia odorifera 4Rx13]
gi|270041475|gb|EFA14573.1| DNA protecting protein DprA [Serratia odorifera 4Rx13]
Length = 373
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P V + LL+L+LAG + P G V +
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPEVVIKLLDLELAGWIAAVPGGYVRI 360
>gi|227538460|ref|ZP_03968509.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241646|gb|EEI91661.1| SMF family DNA processing protein [Sphingobacterium spiritivorum
ATCC 33300]
Length = 370
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + ++ P E+ +I Q L P ID+I H + + + LLEL++
Sbjct: 291 QEQQQKPSAQLSLLPPQLSEEQEKIYQFLQQQNPAPIDEIAIHCALPQSQLAISLLELEM 350
Query: 74 AGRLCHHPEGKVSL 87
G + P L
Sbjct: 351 EGIILSMPGKVYKL 364
>gi|325924331|ref|ZP_08185875.1| DNA protecting protein DprA [Xanthomonas gardneri ATCC 19865]
gi|325545196|gb|EGD16506.1| DNA protecting protein DprA [Xanthomonas gardneri ATCC 19865]
Length = 378
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 30/86 (34%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ ++ + + R+ Q+L + P +D ++ TG+
Sbjct: 291 LLSGELADALRQRLAAPTDQARTAPKASTARPDPDYQRLWQALGHDPTPMDALVERTGLT 350
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
A + +LL ++L G +
Sbjct: 351 AATLSSMLLIMELEGDVVTEHGRYTR 376
>gi|218710996|ref|YP_002418617.1| Smf protein [Vibrio splendidus LGP32]
gi|218324015|emb|CAV20377.1| Smf protein [Vibrio splendidus LGP32]
Length = 370
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ + F + + ++ ++ +D + T I V +
Sbjct: 298 QPSLFEPTPSMGENEQLPFP-----------QLLANVGLEATPVDILAQRTHIPVHEVMM 346
Query: 67 VLLELDLAGRLCHHPEGKVS 86
LLEL+L+G + G +
Sbjct: 347 QLLELELSGHVVAVSGGYIR 366
>gi|167630278|ref|YP_001680777.1| DNA processing protein dpra, putative [Heliobacterium modesticaldum
Ice1]
gi|167593018|gb|ABZ84766.1| DNA processing protein dpra, putative [Heliobacterium modesticaldum
Ice1]
Length = 378
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ S + + ++ RI + L+ P D++ G+ V
Sbjct: 297 QLTLPLSAPAHSSDEQLSENRLSSDQSEAERRILEILDWEPRSADELAARLGLSGSEVAA 356
Query: 67 VLLELDLAGRLCHHPEG 83
L L+L GR+ G
Sbjct: 357 ALTLLELKGRVQMERGG 373
>gi|297537403|ref|YP_003673172.1| DNA protecting protein DprA [Methylotenera sp. 301]
gi|297256750|gb|ADI28595.1| DNA protecting protein DprA [Methylotenera sp. 301]
Length = 371
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I + PI ++++++ +G+ V +L+ L+L G + GK
Sbjct: 319 HAILTLMGYEPIALENLVNLSGLTVSEVSSMLMLLELEGSVASLAGGKY 367
>gi|304412737|ref|ZP_07394340.1| DNA protecting protein DprA [Shewanella baltica OS183]
gi|307305798|ref|ZP_07585544.1| DNA protecting protein DprA [Shewanella baltica BA175]
gi|304348947|gb|EFM13362.1| DNA protecting protein DprA [Shewanella baltica OS183]
gi|306911291|gb|EFN41717.1| DNA protecting protein DprA [Shewanella baltica BA175]
Length = 338
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTSIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 335
>gi|315265384|gb|ADT92237.1| DNA protecting protein DprA [Shewanella baltica OS678]
Length = 362
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 311 LLASVGYETTSIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 359
>gi|217971249|ref|YP_002356000.1| DNA protecting protein DprA [Shewanella baltica OS223]
gi|217496384|gb|ACK44577.1| DNA protecting protein DprA [Shewanella baltica OS223]
Length = 338
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTSIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 335
>gi|160873159|ref|YP_001552475.1| DNA protecting protein DprA [Shewanella baltica OS195]
gi|160858681|gb|ABX47215.1| DNA protecting protein DprA [Shewanella baltica OS195]
Length = 338
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTSIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 335
>gi|78049484|ref|YP_365659.1| DNA processing chain A [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78037914|emb|CAJ25659.1| DNA processing chain A [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 381
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 31/74 (41%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ ++ + P + + R+ Q+L + P +D ++ TG+ + +LL
Sbjct: 304 LAAPTELPSKATTSAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTGLTVAALSSMLLI 363
Query: 71 LDLAGRLCHHPEGK 84
++L G +
Sbjct: 364 MELEGDVVTEHGRY 377
>gi|89055649|ref|YP_511100.1| DNA processing protein DprA, putative [Jannaschia sp. CCS1]
gi|88865198|gb|ABD56075.1| DNA protecting protein DprA [Jannaschia sp. CCS1]
Length = 402
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 24/86 (27%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + T RI L P+ D +I
Sbjct: 315 VIEALGRPAQSGDAPSAVVHELQRPTPAAAKDGGLEGRILAHLGPTPVAEDQMIRDLNAT 374
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
+ L L+++GR+ G VS
Sbjct: 375 PREMAQALAVLEMSGRVTRSAGGMVS 400
>gi|238758794|ref|ZP_04619968.1| hypothetical protein yaldo0001_32100 [Yersinia aldovae ATCC 35236]
gi|238703091|gb|EEP95634.1| hypothetical protein yaldo0001_32100 [Yersinia aldovae ATCC 35236]
Length = 373
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P + LLEL+LAG + P G V +
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPDIVSKLLELELAGWVAAVPGGYVRI 360
>gi|260575925|ref|ZP_05843920.1| DNA protecting protein DprA [Rhodobacter sp. SW2]
gi|259021851|gb|EEW25152.1| DNA protecting protein DprA [Rhodobacter sp. SW2]
Length = 378
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ +I L P+ D +I + A +V LL L+L G+L
Sbjct: 309 PGPVPAPRSLSEVAALHGQILARLGPSPLAEDQLIRDLAVPAALVVPELLSLELEGKLLR 368
Query: 80 HPEGKVSLT 88
G +S T
Sbjct: 369 QAGGLLSRT 377
>gi|332531649|ref|ZP_08407546.1| DNA protecting protein dpra [Hylemonella gracilis ATCC 19624]
gi|332039012|gb|EGI75441.1| DNA protecting protein dpra [Hylemonella gracilis ATCC 19624]
Length = 416
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 26/72 (36%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ + + + +L P+ +D + TG + L+ L+L G +
Sbjct: 345 EDAVDADEAEAHGSEPQDALLAALGADPVSLDALQARTGWPTAQLQAKLMALELNGEVAR 404
Query: 80 HPEGKVSLTMHL 91
P G + +
Sbjct: 405 MPGGLLQRLVRA 416
>gi|7466920|pir||H65120 smf protein - Escherichia coli (strain K-12)
gi|606219|gb|AAA58082.1| ORF_f102; ORF created by difference between our sequence and
ECSMFSMG [Escherichia coli str. K-12 substr. MG1655]
Length = 102
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
N + P+ + ++ + +D + G P V LLEL+LAG
Sbjct: 19 PDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW 78
Query: 77 LCHHPEGKVSL 87
+ P G V L
Sbjct: 79 IAAVPGGYVRL 89
>gi|319424443|gb|ADV52517.1| DNA protecting protein DprA [Shewanella putrefaciens 200]
Length = 362
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 311 LLASVGYETTTIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 359
>gi|29655281|ref|NP_820973.1| DNA protecting protein DprA [Coxiella burnetii RSA 493]
gi|29542553|gb|AAO91487.1| DNA processing protein [Coxiella burnetii RSA 493]
Length = 308
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + ++ + + ID +I +G A +V +LL ++L G +
Sbjct: 241 EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSR 300
Query: 81 PEGKVSL 87
P G + +
Sbjct: 301 PGGVIRV 307
>gi|296104993|ref|YP_003615139.1| DNA protecting protein DprA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059452|gb|ADF64190.1| DNA protecting protein DprA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 379
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 318 LLANVGDEVTPVDVVAERAGQPVPVTVAQLLELELAGWIAAVPGGYVRL 366
>gi|188993327|ref|YP_001905337.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
B100]
gi|167735087|emb|CAP53299.1| DNA processing chain A [Xanthomonas campestris pv. campestris]
Length = 378
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 14 QSDTNHTKNINITHYPEY--TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
Q T T+ P + + R+ +L + P +D ++ TG+ A + +LL +
Sbjct: 302 QRLTAPTEQARTVPQPTPRRSDPDYQRLWHALGHDPTPMDSLLERTGLTAAALSSMLLIM 361
Query: 72 DLAGRLCHHPEGKVS 86
+L G +
Sbjct: 362 ELEGDVVTEHGRYTR 376
>gi|290477160|ref|YP_003470075.1| protein smf [Xenorhabdus bovienii SS-2004]
gi|289176508|emb|CBJ83317.1| Protein smf [Xenorhabdus bovienii SS-2004]
Length = 358
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++++ +D I + + V LLEL+L G++ G + +
Sbjct: 307 ADVLVNVSHEVTPVDVIAQRSCLPVTEVMTRLLELELMGKVAVVAGGYIRVN 358
>gi|163751678|ref|ZP_02158897.1| DNA processing protein DprA, putative [Shewanella benthica KT99]
gi|161328417|gb|EDP99573.1| DNA processing protein DprA, putative [Shewanella benthica KT99]
Length = 339
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ IDD++ H+G +V +LEL+L G + P G + L
Sbjct: 286 ASLLASVGYETTTIDDVVEHSGKAIDLVLEQMLELELQGWVAVVPGGYIRL 336
>gi|120596859|ref|YP_961433.1| DNA protecting protein DprA [Shewanella sp. W3-18-1]
gi|146291137|ref|YP_001181561.1| DNA protecting protein DprA [Shewanella putrefaciens CN-32]
gi|120556952|gb|ABM22879.1| DNA protecting protein DprA [Shewanella sp. W3-18-1]
gi|145562827|gb|ABP73762.1| DNA protecting protein DprA [Shewanella putrefaciens CN-32]
Length = 340
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 289 LLASVGYETTTIDAVVEHSGKTIDLVLEQMLELELQGWVIAVPGGYVRV 337
>gi|182680321|ref|YP_001834467.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636204|gb|ACB96978.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica ATCC
9039]
Length = 429
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERV----RIKQSLNNVPIHIDDIIHHTGIEAP 62
E+ + + ++ + ++ RI L P+ +D++
Sbjct: 341 EETVPTPAAALFSDESAVLIASDGQDHPDQASLKERIIALLGPAPVSVDELARAAASPPG 400
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
+ VLL L+L GRL H VSL
Sbjct: 401 ELQAVLLILELEGRLTRHGASLVSL 425
>gi|149910326|ref|ZP_01898969.1| Smf protein [Moritella sp. PE36]
gi|149806574|gb|EDM66542.1| Smf protein [Moritella sp. PE36]
Length = 368
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I ++ D I + V L+EL+L + P G V
Sbjct: 314 QTILDNVGYEVTTADLIAERSQQPVSQVLTSLMELELDNWVNAVPGGYVR 363
>gi|86137984|ref|ZP_01056560.1| DNA processing protein DprA, putative [Roseobacter sp. MED193]
gi|85825576|gb|EAQ45775.1| DNA processing protein DprA, putative [Roseobacter sp. MED193]
Length = 368
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + E T I L P D ++ +
Sbjct: 284 LDQLSALTQALAGIPAPPAEKRSLQE-TSALHQMILAGLGPSPTASDQLMRDLDLSPQAF 342
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L EL+L G++ P G ++
Sbjct: 343 APALTELELEGKISRIPGGLLAR 365
>gi|150390497|ref|YP_001320546.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF]
gi|149950359|gb|ABR48887.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF]
Length = 365
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIK--QSLNNVPIHIDDIIHHTGIE 60
P +E + + + T I + + P+ ID +I+ TGI
Sbjct: 277 KPLLEISNIIEDLEKIYRLESPQTAEQLERDLSEKEILVYKVIEENPVSIDAVINRTGIH 336
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ +L L++ G + +++
Sbjct: 337 ISELSALLTILEIKGFITQLSGNTFTVS 364
>gi|226942058|ref|YP_002797132.1| Rossmann fold nucleotide-binding protein involved in DNA uptake
[Laribacter hongkongensis HLHK9]
gi|226716986|gb|ACO76124.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Laribacter hongkongensis HLHK9]
Length = 383
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
S+ + + T Q + +L + +D ++ TG+ + +LL
Sbjct: 305 ILSELPPVLSPPVEETRSQAVPQAIEDAVLAALGAEILTLDSLVERTGLTVDTLLGMLLA 364
Query: 71 LDLAGRLCHHPEGKVSL 87
+LAG++ P G+
Sbjct: 365 HELAGQVVGLPGGRYQR 381
>gi|21233179|ref|NP_639096.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66770119|ref|YP_244881.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
8004]
gi|21115029|gb|AAM43008.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66575451|gb|AAY50861.1| DNA processing chain A [Xanthomonas campestris pv. campestris str.
8004]
Length = 378
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 14 QSDTNHTKNINITHYPEY--TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
Q T T+ P + + R+ +L + P +D ++ TG+ A + +LL +
Sbjct: 302 QRLTAPTEQARTVPQPTPRRSDPDYQRLWHALGHDPTPMDSLLERTGLTAAALSSMLLIM 361
Query: 72 DLAGRLCHHPEGKVS 86
+L G +
Sbjct: 362 ELEGDVVTEHGRYTR 376
>gi|113968377|ref|YP_732170.1| DNA protecting protein DprA [Shewanella sp. MR-4]
gi|113883061|gb|ABI37113.1| DNA protecting protein DprA [Shewanella sp. MR-4]
Length = 338
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTTIDAVVEHSGKTIDLVLEQMLELELQGWVVAVPGGYVRV 335
>gi|117918496|ref|YP_867688.1| DNA protecting protein DprA [Shewanella sp. ANA-3]
gi|117610828|gb|ABK46282.1| DNA protecting protein DprA [Shewanella sp. ANA-3]
Length = 338
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTTIDAVVEHSGKTIDLVLEQMLELELQGWVVAVPGGYVRV 335
>gi|262040755|ref|ZP_06013986.1| DNA protecting protein DprA [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041899|gb|EEW42939.1| DNA protecting protein DprA [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 379
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 317 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGGYVRL 366
>gi|86147127|ref|ZP_01065443.1| Smf protein [Vibrio sp. MED222]
gi|85835011|gb|EAQ53153.1| Smf protein [Vibrio sp. MED222]
Length = 370
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
D + E Q ++ ++ +D + T I V + LLEL+L+G
Sbjct: 296 DQQPSLFEPTPSMGENEQLPFPQLLANVGLEATPVDILAQRTHIPVHEVMMQLLELELSG 355
Query: 76 RLCHHPEGKVS 86
+ G +
Sbjct: 356 HVVAVSGGYIR 366
>gi|56459131|ref|YP_154412.1| DNA uptake Rossmann fold nucleotide-binding protein [Idiomarina
loihiensis L2TR]
gi|56178141|gb|AAV80863.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Idiomarina loihiensis L2TR]
Length = 336
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ SL++ P IDD++ +G+E V ++ L+L G + P G + +
Sbjct: 284 RLFASLSSEPRTIDDMVQLSGLEVAEVMEKVVLLELEGLVAAVPGGYIKV 333
>gi|53803082|ref|YP_115235.1| DNA processing protein DprA [Methylococcus capsulatus str. Bath]
gi|53756843|gb|AAU91134.1| putative DNA processing protein DprA [Methylococcus capsulatus str.
Bath]
Length = 364
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 23/68 (33%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
E RI + P +D ++ TG A ++ L+ L++ G +
Sbjct: 295 VDRQERLPVVPPADAEAARILAHIAYAPTSVDTLVAATGYTANLIASKLVLLEMEGHVAA 354
Query: 80 HPEGKVSL 87
P G
Sbjct: 355 APGGGYCR 362
>gi|157372743|ref|YP_001480732.1| DNA protecting protein DprA [Serratia proteamaculans 568]
gi|157324507|gb|ABV43604.1| DNA protecting protein DprA [Serratia proteamaculans 568]
Length = 373
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G P V + LL+L+LAG + P G V +
Sbjct: 310 ADVLANVGDEVTPVDVVAERAGQPVPEVVIKLLDLELAGWIAAVPGGYVRI 360
>gi|114045542|ref|YP_736092.1| DNA protecting protein DprA [Shewanella sp. MR-7]
gi|113886984|gb|ABI41035.1| DNA protecting protein DprA [Shewanella sp. MR-7]
Length = 338
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 287 LLASVGYETTTIDAVVEHSGKTIDLVLEQMLELELQGWVVAVPGGYVRV 335
>gi|146278352|ref|YP_001168511.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
gi|145556593|gb|ABP71206.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
Length = 369
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I L VP+ D +I + A V L+ L+L GR+ P G VS
Sbjct: 314 PVHSLILDRLGPVPVPEDQLIRDLSLPAGRVAQELVALELEGRIQRDPGGLVSR 367
>gi|254524568|ref|ZP_05136623.1| DNA processing chain A [Stenotrophomonas sp. SKA14]
gi|219722159|gb|EED40684.1| DNA processing chain A [Stenotrophomonas sp. SKA14]
Length = 375
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 1 MVHPQIEQNFFSSQSD-TNHTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ P + Q QS T+ P + + ++L++ P +D +I
Sbjct: 285 LLAPALRQQLPGLQSRLGTPTEQAPPALLPARWADDPDYQCLWRALDHNPSGMDSLITRC 344
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGK 84
G+ AP V +LL ++LAG +
Sbjct: 345 GLTAPQVSSMLLAMELAGIVVCVHGRY 371
>gi|294138836|ref|YP_003554814.1| DNA processing protein DprA [Shewanella violacea DSS12]
gi|293325305|dbj|BAJ00036.1| DNA processing protein DprA, putative [Shewanella violacea DSS12]
Length = 339
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ IDD++ H+G +V +LEL+L G + P G + L
Sbjct: 286 ASLLASVGYETTTIDDVVEHSGKAIDLVLEQMLELELQGWVAVVPGGYIRL 336
>gi|238896782|ref|YP_002921527.1| DNA protecting protein DprA [Klebsiella pneumoniae NTUH-K2044]
gi|238549109|dbj|BAH65460.1| putative competence protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 374
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 312 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGGYVRL 361
>gi|166713740|ref|ZP_02244947.1| DNA processing chain A [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 380
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 11 FSSQSDTNHTKNINITHY--PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ T P + + R+ Q+L + PI +D ++ TG+ A + +L
Sbjct: 301 LRERLAAPTELPRKTTAGAGPARSDPDYQRLWQALGHDPIPMDSLVQRTGLTAAALSSML 360
Query: 69 LELDLAGRLCHHPEGK 84
L ++L G +
Sbjct: 361 LIMELEGDVVTEHGRY 376
>gi|152972194|ref|YP_001337340.1| DNA protecting protein DprA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|330002242|ref|ZP_08304253.1| DNA protecting protein DprA [Klebsiella sp. MS 92-3]
gi|150957043|gb|ABR79073.1| putative competence protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328537381|gb|EGF63630.1| DNA protecting protein DprA [Klebsiella sp. MS 92-3]
Length = 374
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 312 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGGYVRL 361
>gi|300854485|ref|YP_003779469.1| putative Smf protein [Clostridium ljungdahlii DSM 13528]
gi|300434600|gb|ADK14367.1| predicted Smf protein [Clostridium ljungdahlii DSM 13528]
Length = 366
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+I + ++P+HID+I T ++ +Y +L EL L G +
Sbjct: 306 EEKICNVIGHIPMHIDEISRITNVDIKRLYELLFELQLKGEIMCLAGNYY 355
>gi|269966997|ref|ZP_06181067.1| Smf protein [Vibrio alginolyticus 40B]
gi|269828391|gb|EEZ82655.1| Smf protein [Vibrio alginolyticus 40B]
Length = 369
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ + +D + + T I V + LLEL+L+G + G +
Sbjct: 317 QLLANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|153834329|ref|ZP_01986996.1| protein smf [Vibrio harveyi HY01]
gi|148869337|gb|EDL68351.1| protein smf [Vibrio harveyi HY01]
Length = 369
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 30 EYTQCERV---RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + ++ ++ N +D + T I V + LLEL+L+G + G +
Sbjct: 306 APIDEEELPFPQLLANVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|182416693|ref|ZP_02948094.1| DNA uptake protein [Clostridium butyricum 5521]
gi|237667207|ref|ZP_04527191.1| DNA protecting protein DprA [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379455|gb|EDT76948.1| DNA uptake protein [Clostridium butyricum 5521]
gi|237655555|gb|EEP53111.1| DNA protecting protein DprA [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 353
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
NI P ++ RI L +VP+HIDD+ T E +Y +L E+ + + P
Sbjct: 288 NIEIRPMIKSPDKRRILNCLTDVPMHIDDVFRKTNFERGALYALLFEMQIKDEIICLPGN 347
Query: 84 KV 85
Sbjct: 348 YY 349
>gi|89902621|ref|YP_525092.1| DNA processing protein DprA [Rhodoferax ferrireducens T118]
gi|89347358|gb|ABD71561.1| DNA processing protein DprA, putative [Rhodoferax ferrireducens
T118]
Length = 409
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + ++ P+ +D + GI+ + L+ L+L G L P G
Sbjct: 354 QAVLLDAIGFDPVGLDALQARCGIDTAGLQAQLMTLELDGLLVRLPGGLFQR 405
>gi|221069821|ref|ZP_03545926.1| DNA protecting protein DprA [Comamonas testosteroni KF-1]
gi|220714844|gb|EED70212.1| DNA protecting protein DprA [Comamonas testosteroni KF-1]
Length = 397
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + T + Q+L + P+ ++ + TG +A +
Sbjct: 314 LEELQGLEPAPIQAEQAQEATGNK---TSISEHPLLQALGHDPMTLESLSDRTGWDAAHL 370
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
L+EL+ G + P G
Sbjct: 371 QAQLMELEFDGLVARLPGGLYQRLT 395
>gi|330997315|ref|ZP_08321168.1| DNA protecting protein DprA [Paraprevotella xylaniphila YIT 11841]
gi|329571110|gb|EGG52817.1| DNA protecting protein DprA [Paraprevotella xylaniphila YIT 11841]
Length = 373
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 30 EYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E RI L + + I+ + T + + L L++ G + G L
Sbjct: 314 PDLCEEEQRIVDCLRQSECLQINALAVATNLPVHKLSAFLFNLEMKGVVRLLSGGMYRLA 373
>gi|260427296|ref|ZP_05781275.1| protein smf [Citreicella sp. SE45]
gi|260421788|gb|EEX15039.1| protein smf [Citreicella sp. SE45]
Length = 398
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEY------TQCERVRIKQSLNNVPIHIDDIIHH 56
P + D + P T I L VP+ D +I
Sbjct: 306 RPPAQAQLPLDLDDAVIDDTPVVPIAPPERRSLRETAALHAEILSRLGPVPVAEDQLIRD 365
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ V VL +L+L GR+ P G ++
Sbjct: 366 LAEPSDTVSPVLTDLELDGRIQRRPGGLLTR 396
>gi|119471683|ref|ZP_01614068.1| hypothetical protein ATW7_16423 [Alteromonadales bacterium TW-7]
gi|119445462|gb|EAW26749.1| hypothetical protein ATW7_16423 [Alteromonadales bacterium TW-7]
Length = 363
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
Q + S+ +DDI+ V LL+L+L ++ +G + L++
Sbjct: 305 QSSDCEVLNSIGFEVTTVDDIVRRVQWPIDKVLARLLDLELDDQIERILDGYIRLSV 361
>gi|91226305|ref|ZP_01261145.1| Smf protein [Vibrio alginolyticus 12G01]
gi|91189316|gb|EAS75595.1| Smf protein [Vibrio alginolyticus 12G01]
Length = 369
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ + +D + + T I V + LLEL+L+G + G +
Sbjct: 317 QLLANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|84393443|ref|ZP_00992200.1| Smf protein [Vibrio splendidus 12B01]
gi|84375959|gb|EAP92849.1| Smf protein [Vibrio splendidus 12B01]
Length = 370
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
D + E Q ++ ++ +D + T I V + LLEL+L+G
Sbjct: 296 DQQPSLFEPTPSMGENEQLPFPQLLANVGLEATPVDILAQRTHIPVHEVMMQLLELELSG 355
Query: 76 RLCHHPEGKVS 86
+ G +
Sbjct: 356 HVVAVSGGYIR 366
>gi|94263095|ref|ZP_01286914.1| SMF protein [delta proteobacterium MLMS-1]
gi|93456638|gb|EAT06746.1| SMF protein [delta proteobacterium MLMS-1]
Length = 381
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + + + + T E + +L+ P I++II +
Sbjct: 293 LASPLTARFLPAKPATASSAAAPTTTPEATPANAEEQALLATLDGYPRDIEEIIAACRLP 352
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
AP V +LLEL++ G + P +
Sbjct: 353 APKVNALLLELEIRGLVESAPGPQYRRA 380
>gi|197119085|ref|YP_002139512.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
gi|197088445|gb|ACH39716.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
Length = 359
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 26/81 (32%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
++ + + + + IDDII + + A V
Sbjct: 279 EDILEELGLEPQANLPLPKPSSFELNPQEAELYALICQGALQIDDIIVQSALTASEVSAT 338
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
LL L++ G + P + ++
Sbjct: 339 LLRLEMKGAIVQLPGKRFAVA 359
>gi|22298974|ref|NP_682221.1| SMF protein [Thermosynechococcus elongatus BP-1]
gi|22295155|dbj|BAC08983.1| SMF protein [Thermosynechococcus elongatus BP-1]
Length = 355
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
T + + +I +++ + + DDI+ ++ VV L+ L
Sbjct: 277 TPPLDPTPFSAPSPTLSLPQQQILEAIQQLSQGSQSVAFDDIVQRVCLDTGVVMAELIHL 336
Query: 72 DLAGRLCHHPEGKVS 86
+L G + P +
Sbjct: 337 ELMGYVEQQPGNRYR 351
>gi|332285820|ref|YP_004417731.1| hypothetical protein PT7_2567 [Pusillimonas sp. T7-7]
gi|330429773|gb|AEC21107.1| hypothetical protein PT7_2567 [Pusillimonas sp. T7-7]
Length = 389
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
T + PE RI +++ P+ +D + T + + LL
Sbjct: 308 LAGPPKSTAAAASSQPEASPEPNS---QRILEAMGYDPVDLDTLQRRTQLNLSTLNSSLL 364
Query: 70 ELDLAGRLCHHPEGKV 85
L+LA + +G+
Sbjct: 365 MLELAETIARQDDGRF 380
>gi|294625232|ref|ZP_06703872.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600460|gb|EFF44557.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 381
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 31/74 (41%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ ++ P + + R+ Q+L + P +D ++ TG+ A + +LL
Sbjct: 304 LAAPTELPGKATTGAGPGPARSDPDYQRLWQALGHDPTPMDSLVQRTGLTAATLSSMLLI 363
Query: 71 LDLAGRLCHHPEGK 84
++L G +
Sbjct: 364 MELEGDVVTEHGRY 377
>gi|186682634|ref|YP_001865830.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102]
gi|186465086|gb|ACC80887.1| DNA protecting protein DprA [Nostoc punctiforme PCC 73102]
Length = 371
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D T P E + + + + D I+ TG+ A V LL+L+
Sbjct: 297 PQIDRVETSTAPEQLMP-TLSPELQTVMDAFTSDALPFDFIVEQTGMAAGSVSGALLQLE 355
Query: 73 LAGRLCHHPEGKV 85
L G + P +
Sbjct: 356 LMGLVLQLPGMRY 368
>gi|282600504|ref|ZP_05974544.2| DNA protecting protein DprA [Providencia rustigianii DSM 4541]
gi|282564967|gb|EFB70502.1| DNA protecting protein DprA [Providencia rustigianii DSM 4541]
Length = 373
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+I T E+ E RI + +D I + V +L EL+++G +
Sbjct: 305 PELSIESTPNSEFNLTE-NRILGMVGYQVTPVDVIAGQLQLPISRVISILTELEISGDIL 363
Query: 79 HHPEGKVSLT 88
G + ++
Sbjct: 364 STAGGYIRVS 373
>gi|83943948|ref|ZP_00956405.1| DNA processing protein DprA, putative [Sulfitobacter sp. EE-36]
gi|83845195|gb|EAP83075.1| DNA processing protein DprA, putative [Sulfitobacter sp. EE-36]
Length = 365
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
I L P+ D ++ + + VL+EL+L G + H G VS
Sbjct: 310 ALHTDILSRLGPSPVAEDQLLRDLAVAPGIATPVLVELELNGHILRHAGGLVSRA 364
>gi|87199818|ref|YP_497075.1| DNA processing protein DprA, putative [Novosphingobium
aromaticivorans DSM 12444]
gi|87135499|gb|ABD26241.1| DNA protecting protein DprA [Novosphingobium aromaticivorans DSM
12444]
Length = 375
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E+ + L PI +D++I + A V + L+EL+LAGRL H G+VSL
Sbjct: 320 DEQADVADLLTTAPIGVDELIRQSRASAGAVQMALIELELAGRLLRHAAGRVSL 373
>gi|126737264|ref|ZP_01752999.1| DNA processing protein DprA, putative [Roseobacter sp. SK209-2-6]
gi|126721849|gb|EBA18552.1| DNA processing protein DprA, putative [Roseobacter sp. SK209-2-6]
Length = 423
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 28/83 (33%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P N + Q ++ + T +I L P+ D ++ P
Sbjct: 330 SPAGPSNAEARQLLSSLPVPPPEKRNLQETNALHQQILNRLGTTPVPADLLMRDLNATPP 389
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
L +L+L GR+ P G +
Sbjct: 390 QFGSALTDLELDGRIERLPGGLL 412
>gi|282879050|ref|ZP_06287810.1| DNA protecting protein DprA [Prevotella buccalis ATCC 35310]
gi|281298784|gb|EFA91193.1| DNA protecting protein DprA [Prevotella buccalis ATCC 35310]
Length = 379
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ H + I +P+ E +++ L N + I+ + GI + +L L
Sbjct: 302 ARLSRAHHEGIERQLFPD-LSAEELQVVGVLGKNNDLQINMLSVQAGIPIAKLSAILFTL 360
Query: 72 DLAGRLCHHPEGKVSLTM 89
++ G L P G L M
Sbjct: 361 EMKGVLKALPGGIYHLLM 378
>gi|304309701|ref|YP_003809299.1| SMF protein [gamma proteobacterium HdN1]
gi|301795434|emb|CBL43632.1| SMF protein [gamma proteobacterium HdN1]
Length = 419
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 27/75 (36%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
++ F++ T E RI L P +DD++ T + +
Sbjct: 339 EDLFTTAEAHTPKGLQATTKPSENHDTPEGRILALLYAEPHSVDDLVERTELGTAEINAT 398
Query: 68 LLELDLAGRLCHHPE 82
L+ L+L GR+
Sbjct: 399 LMMLELEGRIVQMSG 413
>gi|238921408|ref|YP_002934923.1| protein smf [Edwardsiella ictaluri 93-146]
gi|238870977|gb|ACR70688.1| protein smf [Edwardsiella ictaluri 93-146]
Length = 370
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
SS NI+ + Q + ++ + +D + G P V + LLEL
Sbjct: 282 SSLHWLAPLTEGNISAGEDDAQLPFAEVLANVGDEVTTVDAVAERIGRSVPDVAVALLEL 341
Query: 72 DLAGRLCHHPEGKVSL 87
+LAG + G V +
Sbjct: 342 ELAGWIKVVSGGYVRV 357
>gi|15837526|ref|NP_298214.1| DNA processing chain A [Xylella fastidiosa 9a5c]
gi|9105845|gb|AAF83734.1|AE003931_11 DNA processing chain A [Xylella fastidiosa 9a5c]
Length = 387
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + D P + + Q+L + P+ +D +I TG+
Sbjct: 302 LAAPLAHT--LRERLDAPSWPVAPSLSTPNSNDPKYHTLWQALAHDPMSMDSLIERTGLT 359
Query: 61 APVVYLVLLELDLAGRLCHHPEGK 84
A + +LL L+L G++
Sbjct: 360 AATLSSMLLTLELEGKVVVEHGRY 383
>gi|268317536|ref|YP_003291255.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
gi|262335070|gb|ACY48867.1| DNA protecting protein DprA [Rhodothermus marinus DSM 4252]
Length = 385
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ +L PIHID + TG++ + LL+L+ G + +
Sbjct: 328 LSGLERQLYDALEPEPIHIDVLCERTGLDPSTALVYLLQLEFKGLVRQLAGKQF 381
>gi|269925224|ref|YP_003321847.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798]
gi|269788884|gb|ACZ41025.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798]
Length = 365
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ L P HIDDI + + VV L +++ G + + SL
Sbjct: 309 DDPTEQALLDVLGTEPKHIDDIAFESNMPIAVVSATLTMMEIKGIVRSN-GMFYSLAT 365
>gi|148654174|ref|YP_001281267.1| DNA protecting protein DprA [Psychrobacter sp. PRwf-1]
gi|148573258|gb|ABQ95317.1| DNA protecting protein DprA [Psychrobacter sp. PRwf-1]
Length = 421
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPE---YTQCERVRIKQSLNNVPIHIDDIIHHTGI 59
HP N SS + N+N + + + P +D +I+ T +
Sbjct: 334 HPTKHPNAVSSDTTATPKDNVNPILKAQKSVTISEHLQPLWVHIQFEPQDLDALINKTQL 393
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+EL+L G + G+
Sbjct: 394 DTATLLSQLMELELMGAVAEV-GGRYQR 420
>gi|77359007|ref|YP_338582.1| hypothetical protein PSHAa0025 [Pseudoalteromonas haloplanktis
TAC125]
gi|76873918|emb|CAI85139.1| conserved protein of unknown function ; Smf protein
[Pseudoalteromonas haloplanktis TAC125]
Length = 362
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + S+ +DDI+ V LL+L+L ++ +G + +
Sbjct: 308 DSQCEVLNSIGFEVTSVDDIVRRAQWPIDKVQARLLDLELDDQIERVLDGYIRV 361
>gi|290512103|ref|ZP_06551471.1| DNA processing protein [Klebsiella sp. 1_1_55]
gi|289775893|gb|EFD83893.1| DNA processing protein [Klebsiella sp. 1_1_55]
Length = 374
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 312 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGGYVRL 361
>gi|269140539|ref|YP_003297240.1| hypothetical protein ETAE_3198 [Edwardsiella tarda EIB202]
gi|267986200|gb|ACY86029.1| hypothetical protein ETAE_3198 [Edwardsiella tarda EIB202]
gi|304560324|gb|ADM42988.1| hypothetical protein ETAF_2886 [Edwardsiella tarda FL6-60]
Length = 370
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
SS NI+ + Q + ++ + +D + G P V + LLEL
Sbjct: 282 SSLHWLAPLTEGNISAGEDDAQLPFAEVLANVGDEVTTVDAVAERIGRSVPDVAVALLEL 341
Query: 72 DLAGRLCHHPEGKVSL 87
+LAG + G V +
Sbjct: 342 ELAGWIKVVSGGYVRV 357
>gi|294638019|ref|ZP_06716279.1| DNA protecting protein DprA [Edwardsiella tarda ATCC 23685]
gi|291088811|gb|EFE21372.1| DNA protecting protein DprA [Edwardsiella tarda ATCC 23685]
Length = 370
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 28/75 (37%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S NI+H Q + ++ + ID + G P + LLEL+
Sbjct: 283 SLHWLPPPAADNISHCEGDAQLPFAEVLANVGDEVTTIDAVAERIGRSVPDAAVALLELE 342
Query: 73 LAGRLCHHPEGKVSL 87
LAG + G V +
Sbjct: 343 LAGWIKAVSGGYVRV 357
>gi|288933301|ref|YP_003437360.1| DNA protecting protein DprA [Klebsiella variicola At-22]
gi|288888030|gb|ADC56348.1| DNA protecting protein DprA [Klebsiella variicola At-22]
Length = 374
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ + +D + G PV LLEL+LAG + P G V L
Sbjct: 312 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGGYVRL 361
>gi|84516624|ref|ZP_01003983.1| DNA processing protein DprA, putative [Loktanella vestfoldensis
SKA53]
gi|84509660|gb|EAQ06118.1| DNA processing protein DprA, putative [Loktanella vestfoldensis
SKA53]
Length = 336
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+ + I Q L P+ D ++ + A V L++L+L
Sbjct: 262 TTPVPRQAPQARPALRNIAALHAMILQRLGPAPVAEDQLLRDLAVSATDVGPALVDLELD 321
Query: 75 GRLCHHPEGKVSLTM 89
G++ G ++ +
Sbjct: 322 GKITRQAGGLLARAV 336
>gi|254230001|ref|ZP_04923402.1| DNA protecting protein DprA, putative [Vibrio sp. Ex25]
gi|262392833|ref|YP_003284687.1| DNA uptake Rossmann fold nucleotide-binding protein [Vibrio sp.
Ex25]
gi|151937503|gb|EDN56360.1| DNA protecting protein DprA, putative [Vibrio sp. Ex25]
gi|262336427|gb|ACY50222.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio sp. Ex25]
Length = 369
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ + +D + + T I V + LLEL+L+G + G +
Sbjct: 317 QLLANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|156972724|ref|YP_001443631.1| nucleotide-binding protein [Vibrio harveyi ATCC BAA-1116]
gi|156524318|gb|ABU69404.1| hypothetical protein VIBHAR_00389 [Vibrio harveyi ATCC BAA-1116]
Length = 369
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 30 EYTQCERV---RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + ++ ++ N +D + T I V + LLEL+L+G + G +
Sbjct: 306 APIDEEELPFPQLLANVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|332799163|ref|YP_004460662.1| DNA protecting protein DprA [Tepidanaerobacter sp. Re1]
gi|332696898|gb|AEE91355.1| DNA protecting protein DprA [Tepidanaerobacter sp. Re1]
Length = 364
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 29/80 (36%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ +S N N + I + ++ PI I+ II+ + + V VL
Sbjct: 285 DELYLESPKNSNTNTADSVNLPNLSETEKSILEVIDYQPIQIEQIINLSHRNSQEVNAVL 344
Query: 69 LELDLAGRLCHHPEGKVSLT 88
L+L G + P G
Sbjct: 345 TCLELKGYISALPGGYFVRN 364
>gi|325913840|ref|ZP_08176199.1| DNA protecting protein DprA [Xanthomonas vesicatoria ATCC 35937]
gi|325539915|gb|EGD11552.1| DNA protecting protein DprA [Xanthomonas vesicatoria ATCC 35937]
Length = 378
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 30/84 (35%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ ++ + + R+ Q+L + P +D ++ TG+
Sbjct: 291 LLSGELANALRERLAAPTQVPRTTRAITSTRPDPDYQRLWQALGHDPTPMDSLVERTGLT 350
Query: 61 APVVYLVLLELDLAGRLCHHPEGK 84
A + +LL ++L G +
Sbjct: 351 AAALSSMLLIMELEGDVVTEHGRY 374
>gi|238754206|ref|ZP_04615564.1| hypothetical protein yruck0001_28090 [Yersinia ruckeri ATCC 29473]
gi|238707702|gb|EEQ00062.1| hypothetical protein yruck0001_28090 [Yersinia ruckeri ATCC 29473]
Length = 373
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ S SD N + ++ + ++ +D + G P + + LL
Sbjct: 288 QWLSLSDENIISSSEAQLELPFSD-----VLANVEYEVTPVDVVAERAGHSVPDIVVKLL 342
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+LAG + P G V +
Sbjct: 343 ELELAGWIAAVPGGYVRI 360
>gi|258517114|ref|YP_003193336.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771]
gi|257780819|gb|ACV64713.1| Mg chelatase, subunit ChlI [Desulfotomaculum acetoxidans DSM 771]
Length = 748
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 24/76 (31%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ ++N + I L+ +P ++ + G + +L +
Sbjct: 672 EQRINSNEAHRNKRVNEIPPLSQIEKEIYDHLSPIPQSVEQLAGILGSNPSALLRILCVM 731
Query: 72 DLAGRLCHHPEGKVSL 87
+L G++ G
Sbjct: 732 ELEGKIELFAGGMARR 747
>gi|85708361|ref|ZP_01039427.1| DNA processing chain A [Erythrobacter sp. NAP1]
gi|85689895|gb|EAQ29898.1| DNA processing chain A [Erythrobacter sp. NAP1]
Length = 384
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E I + L PI +D++I +G + V++ LLEL+L G + G V LT
Sbjct: 330 DEGEAITRLLTTAPIGVDELIRQSGADPAAVHMTLLELELGGEVERGDGGMVRLT 384
>gi|254440562|ref|ZP_05054056.1| DNA protecting protein DprA, putative [Octadecabacter antarcticus
307]
gi|198256008|gb|EDY80322.1| DNA protecting protein DprA, putative [Octadecabacter antarcticus
307]
Length = 344
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 30/84 (35%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ ++ + + + T I L+ P+ D +I G +
Sbjct: 260 LDQLGEPTTVAPELPLEPVPQPRGLRETALLHADILDRLSPAPMAEDQLIRSLGGAPTAI 319
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
+L++L+L G++ G ++
Sbjct: 320 APLLMDLELDGKVIRQAGGILARA 343
>gi|110637848|ref|YP_678055.1| DNA processing protein [Cytophaga hutchinsonii ATCC 33406]
gi|110280529|gb|ABG58715.1| DNA processing protein [Cytophaga hutchinsonii ATCC 33406]
Length = 364
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
++ + + + + I L + IHID++ + + + VLLE++ G
Sbjct: 293 TPSQQAHKHIILADLEEDELMIYAVLTDNEGIHIDELSWKSQLSMQKISSVLLEMEFKGI 352
Query: 77 LCHHPEGKVSL 87
+ P K SL
Sbjct: 353 VKALPGKKFSL 363
>gi|269962642|ref|ZP_06176987.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832565|gb|EEZ86679.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 369
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 30 EYTQCERV---RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + ++ ++ N +D + T I V + LLEL+L+G + G +
Sbjct: 306 APIDEEELPFPQLLANVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|209515835|ref|ZP_03264697.1| DNA protecting protein DprA [Burkholderia sp. H160]
gi|209503683|gb|EEA03677.1| DNA protecting protein DprA [Burkholderia sp. H160]
Length = 409
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ R+ +L + P ++ + T +E ++ VLL L+LAG + P G+ H
Sbjct: 352 SDTERLLAALGHSPTTLEILAARTEMEDAALHAVLLRLELAGEVTLLPGGRFMRAHHD 409
>gi|157373178|ref|YP_001471778.1| DNA protecting protein DprA [Shewanella sediminis HAW-EB3]
gi|157315552|gb|ABV34650.1| DNA protecting protein DprA [Shewanella sediminis HAW-EB3]
Length = 368
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V L
Sbjct: 317 LLASVGYETTPIDVVVEHSGKAIELVLEQMLELELQGWVAVVPGGYVRL 365
>gi|71277761|ref|YP_266804.1| putative DNA processing protein DprA [Colwellia psychrerythraea
34H]
gi|71143501|gb|AAZ23974.1| putative DNA processing protein DprA [Colwellia psychrerythraea
34H]
Length = 383
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ S+ +D ++ + + V L L+L G + P G +
Sbjct: 332 DALLDSVGFEITPVDKVVLRSELPVEEVLTRLTMLELNGLVSAVPGGYIR 381
>gi|304415446|ref|ZP_07396095.1| hypothetical protein REG_1635 [Candidatus Regiella insecticola
LSR1]
gi|304282710|gb|EFL91224.1| hypothetical protein REG_1635 [Candidatus Regiella insecticola
LSR1]
Length = 361
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 23/69 (33%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + E + + +D I + + LLEL+LAG +
Sbjct: 291 PPSEKPSLPKEQMTLPFADVLAHIEYDVTPVDIIAERVDQSVSELVIKLLELELAGWITA 350
Query: 80 HPEGKVSLT 88
P G +T
Sbjct: 351 VPGGYGRVT 359
>gi|77918023|ref|YP_355838.1| Rossmann-fold nucleotide-binding protein [Pelobacter carbinolicus
DSM 2380]
gi|77544106|gb|ABA87668.1| DNA protecting protein DprA [Pelobacter carbinolicus DSM 2380]
Length = 366
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
++ Q+L + P+H+D++ G+ V +LL L+L P +
Sbjct: 313 KVYQALQDTPLHVDELARKCGLTPMEVSAILLHLELEDGAIQLPGMRFVRKRST 366
>gi|170724410|ref|YP_001758436.1| DNA protecting protein DprA [Shewanella woodyi ATCC 51908]
gi|169809757|gb|ACA84341.1| DNA protecting protein DprA [Shewanella woodyi ATCC 51908]
Length = 331
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 278 ASLLASVGYETTPIDVVVEHSGKAIELVLEQMLELELQGWVAVVPGGYVRI 328
>gi|156932269|ref|YP_001436185.1| DNA protecting protein DprA [Cronobacter sakazakii ATCC BAA-894]
gi|156530523|gb|ABU75349.1| hypothetical protein ESA_00040 [Cronobacter sakazakii ATCC BAA-894]
Length = 370
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
QN + N++ + P + ++ + +D + G P+
Sbjct: 284 QNELPWLTTANYSPDQEEGALPFP------ELLANVGDEVTPVDVVAERAGQPVPLTVAQ 337
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V +
Sbjct: 338 LLELELAGWIAAVPGGYVRV 357
>gi|28899814|ref|NP_799419.1| Smf protein [Vibrio parahaemolyticus RIMD 2210633]
gi|153837670|ref|ZP_01990337.1| protein smf [Vibrio parahaemolyticus AQ3810]
gi|260362020|ref|ZP_05775025.1| DNA-processing protein Smf [Vibrio parahaemolyticus K5030]
gi|260876493|ref|ZP_05888848.1| DNA-processing protein Smf [Vibrio parahaemolyticus AN-5034]
gi|260897450|ref|ZP_05905946.1| DNA-processing protein Smf [Vibrio parahaemolyticus Peru-466]
gi|260901341|ref|ZP_05909736.1| DNA-processing protein Smf [Vibrio parahaemolyticus AQ4037]
gi|28808066|dbj|BAC61303.1| Smf protein [Vibrio parahaemolyticus RIMD 2210633]
gi|149748960|gb|EDM59787.1| protein smf [Vibrio parahaemolyticus AQ3810]
gi|308087925|gb|EFO37620.1| DNA-processing protein Smf [Vibrio parahaemolyticus Peru-466]
gi|308090386|gb|EFO40081.1| DNA-processing protein Smf [Vibrio parahaemolyticus AN-5034]
gi|308109879|gb|EFO47419.1| DNA-processing protein Smf [Vibrio parahaemolyticus AQ4037]
gi|308114175|gb|EFO51715.1| DNA-processing protein Smf [Vibrio parahaemolyticus K5030]
Length = 370
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ + +D + + T I V + LLEL+L+G + G +
Sbjct: 318 QLLANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 366
>gi|253997552|ref|YP_003049616.1| DNA protecting protein DprA [Methylotenera mobilis JLW8]
gi|253984231|gb|ACT49089.1| DNA protecting protein DprA [Methylotenera mobilis JLW8]
Length = 370
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
Q +N + + ++ P ++ ++ TG+ V +L
Sbjct: 290 EELKLQPRSNTLISKASASQDREIASSEQLLLDTMGFDPAPLERLVTLTGLTVAEVSSML 349
Query: 69 LELDLAGRLCHHPEGKV 85
+ L+L G++ G+
Sbjct: 350 MLLELDGKVASLTGGQY 366
>gi|187476713|ref|YP_784736.1| Smf protein [Bordetella avium 197N]
gi|115421299|emb|CAJ47804.1| Smf protein [Bordetella avium 197N]
Length = 373
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ SS + P + +L + P H D + +G++A + L
Sbjct: 295 DELSSPRQPAPSPPAQPRAEPPPGT---QALLTALGHDPQHADSLAAASGLDAATLGAQL 351
Query: 69 LELDLAGRLCHHPEGKVSL 87
EL++AG + +G+ L
Sbjct: 352 TELEVAGWIARLDDGRYQL 370
>gi|260221948|emb|CBA31022.1| Protein smf [Curvibacter putative symbiont of Hydra magnipapillata]
Length = 392
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 28/76 (36%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ S + + + +L P ++ + + +G++ + +L+ L
Sbjct: 313 RAPSTSTNGTGEVSPSAATSLSWLESGLLDALGFEPTSLEVLQNRSGMDTATLQALLMGL 372
Query: 72 DLAGRLCHHPEGKVSL 87
+L+G + P K
Sbjct: 373 ELSGFVARLPGSKFQR 388
>gi|119387028|ref|YP_918083.1| DNA protecting protein DprA [Paracoccus denitrificans PD1222]
gi|119377623|gb|ABL72387.1| DNA protecting protein DprA [Paracoccus denitrificans PD1222]
Length = 418
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
RI L P + +I G+ A V+ +L L+L+GR+ GK++L
Sbjct: 364 EGRILARLGPSPTEENMLIRDLGVPAAVLAPAILALELSGRVQRIAGGKLALN 416
>gi|254449997|ref|ZP_05063434.1| DNA protecting protein DprA [Octadecabacter antarcticus 238]
gi|198264403|gb|EDY88673.1| DNA protecting protein DprA [Octadecabacter antarcticus 238]
Length = 336
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + T I L+ P+ D +I G + +L++L+L G++
Sbjct: 266 PLEPVPQPRGLRETALLHADILDRLSPAPMAEDQLIRSLGAAPTAIAPLLMDLELDGKVI 325
Query: 79 HHPEGKVSLT 88
G ++
Sbjct: 326 RQAGGILARA 335
>gi|315125139|ref|YP_004067142.1| hypothetical protein PSM_A0028 [Pseudoalteromonas sp. SM9913]
gi|315013652|gb|ADT66990.1| hypothetical protein PSM_A0028 [Pseudoalteromonas sp. SM9913]
Length = 363
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ S+ +DDI+ V LL+L+L ++ +G + L+
Sbjct: 310 EVLNSIGFEVTSVDDIMRRVQWPIDKVQARLLDLELDDQIERVLDGYIKLS 360
>gi|289664811|ref|ZP_06486392.1| DNA processing chain A [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 254
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ R+ Q+L + P +D ++ TG+ A + +LL ++L G +
Sbjct: 199 DPDYQRLWQALGHDPTSMDSLVQRTGLTAAALSSMLLIMELEGDVVTEHGRYTR 252
>gi|255020220|ref|ZP_05292289.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Acidithiobacillus caldus ATCC 51756]
gi|254970362|gb|EET27855.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Acidithiobacillus caldus ATCC 51756]
Length = 364
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 8/79 (10%), Positives = 26/79 (32%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + + +L+ + +++I +G+ + +L
Sbjct: 281 EELGPLFHARRELQRDTAAPKAPEDPQERMVWNALHEDTLSLEEISERSGLTLSALSAIL 340
Query: 69 LELDLAGRLCHHPEGKVSL 87
L +++ G + P G+
Sbjct: 341 LSMEIHGFIAPCPGGRFCR 359
>gi|288575793|ref|ZP_06393973.1| putative DNA processing protein DprA [Neisseria mucosa ATCC
25996]
gi|288567000|gb|EFC88560.1| putative DNA processing protein DprA [Neisseria mucosa ATCC
25996]
Length = 48
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ P+H D + T A VY LLE +L G + P G+
Sbjct: 1 MGYDPVHPDILAQQTAWAAADVYARLLEYELDGIVAALPGGRYQR 45
>gi|91203661|emb|CAJ71314.1| strongly similar to competence protein DprA [Candidatus Kuenenia
stuttgartiensis]
Length = 367
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+I L++ PI+ID+II T + + +V L+ L++ + +
Sbjct: 311 LNSHEKKIFSLLSSAPIYIDEIIQSTKLPSSIVSSTLMILEIKKLVKQLSGKRF 364
>gi|332139432|ref|YP_004425170.1| DNA protecting protein DprA [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549454|gb|AEA96172.1| DNA protecting protein DprA [Alteromonas macleodii str. 'Deep
ecotype']
Length = 369
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ S+ ID I + LLE +L G + P G V L
Sbjct: 316 DKLLASVEYDITAIDVIAQRNALSVSQAMASLLEYELRGLVAAVPGGYVKL 366
>gi|260775016|ref|ZP_05883916.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio coralliilyticus ATCC BAA-450]
gi|260609106|gb|EEX35265.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio coralliilyticus ATCC BAA-450]
Length = 371
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ + +D + T I V + LLEL+L+G + G +
Sbjct: 319 QLLANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIR 367
>gi|237724431|ref|ZP_04554912.1| smf protein DNA processing chain A [Bacteroides sp. D4]
gi|229437300|gb|EEO47377.1| smf protein DNA processing chain A [Bacteroides dorei 5_1_36/D4]
Length = 371
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP--EYTQCERVRIKQSLNNVP--IHIDDIIHHTGIE 60
++ N+++ E I L VP + I+ +I T I
Sbjct: 283 TSAEDLVKGMGWENNSRTEKTIQRELFPDLNEEETAIVTLLQKVPDGLQINTLIVETNIP 342
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L EL++ G + G L
Sbjct: 343 VHKMSALLFELEMKGVIRTLAGGVYRL 369
>gi|160872061|ref|ZP_02062193.1| protein smf (DNA-processing chain A) [Rickettsiella grylli]
gi|159120860|gb|EDP46198.1| protein smf (DNA-processing chain A) [Rickettsiella grylli]
Length = 384
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 22/69 (31%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + + ++ + L ID ++ T + V L L L G +
Sbjct: 315 PRSPLTPQKNQRSSLDSQDKKLVECLGFETTSIDSVLARTKLPITTVLDRLSILQLQGYI 374
Query: 78 CHHPEGKVS 86
P G V
Sbjct: 375 DKVPGGYVR 383
>gi|189426316|ref|YP_001953493.1| DNA protecting protein DprA [Geobacter lovleyi SZ]
gi|189422575|gb|ACD96973.1| DNA protecting protein DprA [Geobacter lovleyi SZ]
Length = 364
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 17 TNHTKNINITHYPE---YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ H + H P + + + P H+D+I + V ++L L+L
Sbjct: 290 SEHALPLLDRHAPPLRCSLTPREAAVYELVAQGPRHLDEITQALELTPGEVSAMVLGLEL 349
Query: 74 AGRLCHHPEGKVSL 87
G L P SL
Sbjct: 350 KGMLQQLPGSYYSL 363
>gi|169830783|ref|YP_001716765.1| DNA protecting protein DprA [Candidatus Desulforudis audaxviator
MP104C]
gi|169637627|gb|ACA59133.1| DNA protecting protein DprA [Candidatus Desulforudis audaxviator
MP104C]
Length = 394
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
E R+ + L + +I TG+ AP VL L++ G +
Sbjct: 318 PETESGEAEAVAQLSGEEKRVLEILQGQSLSDQALIRLTGLAAPQTAAVLAYLEIKGFVR 377
Query: 79 HHPEGKV 85
P G
Sbjct: 378 RAPGGLY 384
>gi|260599605|ref|YP_003212176.1| hypothetical protein CTU_38130 [Cronobacter turicensis z3032]
gi|260218782|emb|CBA34130.1| Protein smf [Cronobacter turicensis z3032]
Length = 381
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
QN N++ + P + ++ + +D + G P+
Sbjct: 295 QNELPWLKTVNYSPDQEEGALPFP------ELLANVGDEVTPVDVVAERAGQPVPLTVAQ 348
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LLEL+LAG + P G V +
Sbjct: 349 LLELELAGWIAAVPGGYVRV 368
>gi|254507278|ref|ZP_05119414.1| Smf protein [Vibrio parahaemolyticus 16]
gi|219549738|gb|EED26727.1| Smf protein [Vibrio parahaemolyticus 16]
Length = 373
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 23 INITHYPEYTQCERV---RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ +P E + ++ ++ + +D + T I V + LLEL+L+G +
Sbjct: 301 VQQEIFPLEDSKEELPFPQLLANVGSRATPVDILASRTNIPVQEVMMQLLELELSGHVVA 360
Query: 80 HPEGKVS 86
G +
Sbjct: 361 VSGGYIR 367
>gi|30249915|ref|NP_841985.1| SMF family protein [Nitrosomonas europaea ATCC 19718]
gi|30180952|emb|CAD85879.1| SMF family [Nitrosomonas europaea ATCC 19718]
Length = 371
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + + + ID + +G+ V +LL L+L GR+ P GK
Sbjct: 315 EGDDTGLLMYFSYDSTDIDTLCARSGLTVETVSAMLLGLELEGRIGSLPGGKYQR 369
>gi|163803313|ref|ZP_02197191.1| Smf protein [Vibrio sp. AND4]
gi|159172883|gb|EDP57722.1| Smf protein [Vibrio sp. AND4]
Length = 369
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
++ ++ N +D + T I V + LLEL+L+G + G +
Sbjct: 317 QLLANVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIR 365
>gi|58616939|ref|YP_196138.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
gi|58416551|emb|CAI27664.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
Length = 375
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q + + P+ I++II T + + L+EL+ + ++ P KV L
Sbjct: 318 DNAKNLILQHITHSPVEIEEIITSTNLSISTTLIALMELETSHKIERLPNNKVML 372
>gi|308047747|ref|YP_003911313.1| DNA protecting protein DprA [Ferrimonas balearica DSM 9799]
gi|307629937|gb|ADN74239.1| DNA protecting protein DprA [Ferrimonas balearica DSM 9799]
Length = 366
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S++ ID+++ + + VV L E++L G + P G V L
Sbjct: 314 ALLDSVDYDATPIDNVVARSQLPVEVVLEQLTEMELDGWVAAVPGGYVRL 363
>gi|189218918|ref|YP_001939559.1| DNA uptake Rossmann fold nucleotide-binding protein
[Methylacidiphilum infernorum V4]
gi|189185776|gb|ACD82961.1| Rossmann fold nucleotide-binding protein involved in DNA uptake
[Methylacidiphilum infernorum V4]
Length = 380
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 28/63 (44%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ T + + ++LN+ + +D++ T + V+ +L+ L++ + P
Sbjct: 316 DQTPIAIELSKDERLVYEALNDQEMSLDELAEKTDLAVSVLCPLLIRLEMKKIVQQLPGN 375
Query: 84 KVS 86
+ +
Sbjct: 376 RYA 378
>gi|253564628|ref|ZP_04842085.1| smf protein DNA processing chain A [Bacteroides sp. 3_2_5]
gi|251948404|gb|EES88686.1| smf protein DNA processing chain A [Bacteroides sp. 3_2_5]
gi|301165345|emb|CBW24917.1| putative DNA processing Smf-like protein [Bacteroides fragilis
638R]
Length = 373
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +RI L + I+ ++ I + +L EL++ G + G L
Sbjct: 313 PDLSAEELRIVDILGKLGDLQINALMVQADIPINKISAILFELEMKGVIRVLAGGVYQL 371
>gi|183600718|ref|ZP_02962211.1| hypothetical protein PROSTU_04314 [Providencia stuartii ATCC 25827]
gi|188019698|gb|EDU57738.1| hypothetical protein PROSTU_04314 [Providencia stuartii ATCC 25827]
Length = 359
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 21/70 (30%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + +I + P D I V VL EL++ G +
Sbjct: 290 PVEPLEEETLNAEFNLTENKILSMVEYHPTPADVIAERVQQPITEVIAVLTELEIDGAIA 349
Query: 79 HHPEGKVSLT 88
G + L+
Sbjct: 350 SVTGGYIKLS 359
>gi|221135273|ref|ZP_03561576.1| hypothetical protein GHTCC_10125 [Glaciecola sp. HTCC2999]
Length = 370
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ I++I H+ + P V LLE +L+G++ G V L
Sbjct: 318 LLDSVGYEITAIENIAAHSSLPLPQVLAQLLEFELSGKVAAVAGGYVKL 366
>gi|92114982|ref|YP_574910.1| DNA processing protein DprA, putative [Chromohalobacter salexigens
DSM 3043]
gi|91798072|gb|ABE60211.1| DNA protecting protein DprA [Chromohalobacter salexigens DSM 3043]
Length = 371
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + + + + L+ P +D ++ + ++
Sbjct: 290 LEQLGQWQAPQAVVASTDDMTEAANAPADP----LLALLDTAPTPLDVLVERSELDVGGC 345
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMH 90
+ LLEL+LAG+ G V H
Sbjct: 346 QMRLLELELAGQAAQVSGGWVRRATH 371
>gi|300721399|ref|YP_003710670.1| protein smf [Xenorhabdus nematophila ATCC 19061]
gi|297627887|emb|CBJ88433.1| Protein smf [Xenorhabdus nematophila ATCC 19061]
Length = 362
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E T+ + +++N ID I + + V LLEL+L G++ G V
Sbjct: 304 EQTELPFADVLVNVSNEVTPIDVIAQRSSLPVAEVMTKLLELELMGKVAVTAGGYV 359
>gi|289667881|ref|ZP_06488956.1| DNA processing chain A [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 251
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ R+ Q+L + P +D ++ TG+ A + +LL ++L G +
Sbjct: 196 DPDYQRLWQALGHDPTSMDSLVQRTGLTAAALSSMLLIMELEGDVVTEHGRYTR 249
>gi|312882740|ref|ZP_07742475.1| nucleotide-binding protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369598|gb|EFP97115.1| nucleotide-binding protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 372
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ + + +D + T I V + LLEL+L+G + G +
Sbjct: 319 AELLANVGSKAVPVDILASRTHIPVQEVMMQLLELELSGHIVAVSGGYIR 368
>gi|60683760|ref|YP_213904.1| putative DNA processing Smf-like protein [Bacteroides fragilis NCTC
9343]
gi|60495194|emb|CAH10015.1| putative DNA processing Smf-like protein [Bacteroides fragilis NCTC
9343]
Length = 373
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +RI L + I+ ++ I + +L EL++ G + G L
Sbjct: 313 PDLSAEELRIVDILGKLGDLQINALMVQADIPINKISAILFELEMKGVIRVLAGGVYQL 371
>gi|53715841|ref|YP_101833.1| Smf protein DNA processing chain A [Bacteroides fragilis YCH46]
gi|265764708|ref|ZP_06092983.1| smf protein DNA processing chain A [Bacteroides sp. 2_1_16]
gi|52218706|dbj|BAD51299.1| Smf protein DNA processing chain A [Bacteroides fragilis YCH46]
gi|263254092|gb|EEZ25526.1| smf protein DNA processing chain A [Bacteroides sp. 2_1_16]
Length = 373
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +RI L + I+ ++ I + +L EL++ G + G L
Sbjct: 313 PDLSAEELRIVDILGKLGDLQINALMVQADIPINKISAILFELEMKGVIRVLAGGVYQL 371
>gi|188574931|ref|YP_001911860.1| DNA protecting protein DprA [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519383|gb|ACD57328.1| DNA protecting protein DprA [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 311
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 11 FSSQSDTNHTKNINITHY--PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ T P + + R+ Q+L + P +D ++ T + A + +L
Sbjct: 232 LRERLAAPTELPRKTTAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTELTAAALSSML 291
Query: 69 LELDLAGRLCHHPEGKVS 86
L ++L G +
Sbjct: 292 LIMELEGDVVTEHGRYTR 309
>gi|294664415|ref|ZP_06729772.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292605821|gb|EFF49115.1| DNA processing chain A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 138
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ ++ P + + R+ Q+L + P +D ++ TG+ A + +LL
Sbjct: 61 LAAPTELPGKATTGAGPGPARSDPDYQRLWQALGHDPTPMDSLVQRTGLTAATLSSMLLI 120
Query: 71 LDLAGRLCHHPEGKVS 86
++L G +
Sbjct: 121 MELEGDVVTEHGRYTR 136
>gi|154489877|ref|ZP_02030138.1| hypothetical protein PARMER_00106 [Parabacteroides merdae ATCC
43184]
gi|154089319|gb|EDN88363.1| hypothetical protein PARMER_00106 [Parabacteroides merdae ATCC
43184]
Length = 371
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q+ + E E+ + + IHI+++ I + ++L EL+
Sbjct: 296 QAGATPVQTELFFAEAETFTSEQNPVLAIMRTRNEIHINELASVLEIPVHQLSMLLFELE 355
Query: 73 LAGRLCHHPEGKVSLT 88
+ G++ P L+
Sbjct: 356 INGKVKALPGNLYKLS 371
>gi|124009967|ref|ZP_01694631.1| Smf protein DNA processing chain A [Microscilla marina ATCC 23134]
gi|123983989|gb|EAY24372.1| Smf protein DNA processing chain A [Microscilla marina ATCC 23134]
Length = 371
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 31 YTQCERVRIKQSLNNVP---IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E I L P + +D+I + V LL L++ G L P K +L
Sbjct: 311 PENAEEKEIVVLLQKQPKKTLSLDEISWQLKMPLSKVSACLLNLEIQGYLKSLPGKKFTL 370
>gi|85859218|ref|YP_461420.1| SMF family protein involved in DNA uptake [Syntrophus
aciditrophicus SB]
gi|85722309|gb|ABC77252.1| SMF family protein involved in DNA uptake [Syntrophus
aciditrophicus SB]
Length = 394
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I L + P+ ID II +G+ LL L+L + P
Sbjct: 329 PSFSENEALIFNLLTDKPVDIDLIIEKSGLNINETLNCLLNLELYEAILQLPGKLYKR 386
>gi|149279365|ref|ZP_01885496.1| putative DNA processing Smf-like protein [Pedobacter sp. BAL39]
gi|149229891|gb|EDM35279.1| putative DNA processing Smf-like protein [Pedobacter sp. BAL39]
Length = 365
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 24/76 (31%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + P E + L P+ ID I + + L LL L+
Sbjct: 290 QPTRSVEKAKATQVQLPLDLLPEEQSLMGCLAKGPLDIDQIALKIALPQSKIVLHLLNLE 349
Query: 73 LAGRLCHHPEGKVSLT 88
+ G + P ++
Sbjct: 350 MNGLITALPGKSYRIS 365
>gi|119773187|ref|YP_925927.1| DNA processing protein DprA [Shewanella amazonensis SB2B]
gi|119765687|gb|ABL98257.1| DNA processing protein DprA, putative [Shewanella amazonensis SB2B]
Length = 338
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID ++ H+G +V +LEL+L G + P G V +
Sbjct: 286 ELLASVEYETTPIDRLVEHSGKPIDLVLEQILELELQGWVAAVPGGYVRV 335
>gi|21244527|ref|NP_644109.1| DNA processing chain A [Xanthomonas axonopodis pv. citri str. 306]
gi|21110199|gb|AAM38645.1| DNA processing chain A [Xanthomonas axonopodis pv. citri str. 306]
Length = 381
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 33/74 (44%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ ++ + P + + R+ Q+L++ P +D ++ TG+ A + +LL
Sbjct: 304 LAAPTELPGKATTSAGPGPARSDPDYQRLWQALDHDPTPMDSLVQRTGLTAAALSSMLLI 363
Query: 71 LDLAGRLCHHPEGK 84
++L G +
Sbjct: 364 MELEGDVVTEHGRY 377
>gi|21673094|ref|NP_661159.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
tepidum TLS]
gi|21646166|gb|AAM71501.1| DprA/SMF protein, putative DNA processing factor [Chlorobium
tepidum TLS]
Length = 399
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 6 IEQNFFSSQSDTNHTKNI-NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + P E I ++L + +HID I TG++ +
Sbjct: 314 AEDILAELNPAQHPALKTHPEASEPFDLNIEESCIVEALQSGAMHIDLIAEKTGLKIDAL 373
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ L EL+L + P
Sbjct: 374 LVHLFELELKRIIEQEPGQIFR 395
>gi|189502567|ref|YP_001958284.1| hypothetical protein Aasi_1230 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498008|gb|ACE06555.1| hypothetical protein Aasi_1230 [Candidatus Amoebophilus asiaticus
5a2]
Length = 374
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ + L +ID+I + V +LL+L+L + P K L
Sbjct: 323 QVLKLLQKEA-YIDEISQQIQLSPSQVSSMLLQLELKNIVECLPGNKFKL 371
>gi|320154886|ref|YP_004187265.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio vulnificus MO6-24/O]
gi|319930198|gb|ADV85062.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio vulnificus MO6-24/O]
Length = 367
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ ++ N +D + + T I V + LLEL+L+G + G +
Sbjct: 315 QLLANVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRR 364
>gi|27364482|ref|NP_760010.1| DNA protecting protein DprA [Vibrio vulnificus CMCP6]
gi|27360601|gb|AAO09537.1| DNA protecting protein DprA [Vibrio vulnificus CMCP6]
Length = 367
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ ++ N +D + + T I V + LLEL+L+G + G +
Sbjct: 315 QLLANVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRR 364
>gi|283778858|ref|YP_003369613.1| DNA protecting protein DprA [Pirellula staleyi DSM 6068]
gi|283437311|gb|ADB15753.1| DNA protecting protein DprA [Pirellula staleyi DSM 6068]
Length = 401
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 29/83 (34%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+++ S S + + P E +I + L+ P+ ID + + + V
Sbjct: 318 AKQRSLPSDSSSDSAAAPPKLAPIPADLSAEERKIVELLSAEPMLIDQVTVRSKLPISRV 377
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L L++ + +V
Sbjct: 378 LSTLSVLEMKRLISRVGGNQVMR 400
>gi|317131315|ref|YP_004090629.1| DNA protecting protein DprA [Ethanoligenens harbinense YUAN-3]
gi|315469294|gb|ADU25898.1| DNA protecting protein DprA [Ethanoligenens harbinense YUAN-3]
Length = 387
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 6 IEQNFFSSQSDTNHTK------NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGI 59
+Q+ F + + + + + L+ P H+D++ +
Sbjct: 299 AQQSLFPPAAVPPRPEPVPEKPATPARRPVQGLDDVQRAVLALLDASPRHVDELAVRASL 358
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVS 86
V VL L++ G P +
Sbjct: 359 PPGQVLAVLTVLEIQGLARSEPGRRFC 385
>gi|328471165|gb|EGF42067.1| Smf protein [Vibrio parahaemolyticus 10329]
Length = 370
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ ++ + +D + + T I V + LLEL+L+G + G +
Sbjct: 318 QLLANVGSEATPVDILANRTNIPVREVMMQLLELELSGHVVAVSGGYI 365
>gi|300871631|ref|YP_003786504.1| DNA protecting protein DprA [Brachyspira pilosicoli 95/1000]
gi|300689332|gb|ADK32003.1| DNA protecting protein, DprA [Brachyspira pilosicoli 95/1000]
Length = 401
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
Q + I ++ IHIDDII T ++ V +L++L++ G + S+
Sbjct: 341 PDLQDDEAFIYDIISKVEKIHIDDIIEKTNMKVQSVTSLLMQLEINGFIKQLSGKYYSI 399
>gi|196233436|ref|ZP_03132280.1| DNA protecting protein DprA [Chthoniobacter flavus Ellin428]
gi|196222576|gb|EDY17102.1| DNA protecting protein DprA [Chthoniobacter flavus Ellin428]
Length = 362
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ ++ E I S++N ID I+ +G+ P V LL L++
Sbjct: 291 APEPRKMSTPVSAIPLSTEEQSILASVDNAETPIDLIVTKSGLPMPKVASTLLALEMKRL 350
Query: 77 LCHHPEGKV 85
+ P +
Sbjct: 351 VKQLPGQQF 359
>gi|328675504|gb|AEB28179.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Francisella cf. novicida 3523]
Length = 368
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNESEKTILDSIDKELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|254463787|ref|ZP_05077198.1| DNA protecting protein DprA [Rhodobacterales bacterium Y4I]
gi|206684695|gb|EDZ45177.1| DNA protecting protein DprA [Rhodobacterales bacterium Y4I]
Length = 365
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
T +I L P +++ + + L +L+L G + P G +
Sbjct: 301 AQTHALHQQILGRLGPSPTSETELMRGLALPPHELAPALTDLELEGAILRQPGGLLC 357
>gi|167753798|ref|ZP_02425925.1| hypothetical protein ALIPUT_02083 [Alistipes putredinis DSM 17216]
gi|167658423|gb|EDS02553.1| hypothetical protein ALIPUT_02083 [Alistipes putredinis DSM 17216]
Length = 370
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 23 INITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
T P + + + PI +++ +G+ + +LL L++AG + P
Sbjct: 303 DRPTAAPAALTRDEEGLLGCFRTDDPISAEELCELSGLGFGELSALLLGLEMAGAVRQLP 362
Query: 82 EGKV 85
+
Sbjct: 363 GNRY 366
>gi|166363019|ref|YP_001655292.1| SMF family DNA processing protein [Microcystis aeruginosa NIES-843]
gi|166085392|dbj|BAG00100.1| SMF family DNA processing protein [Microcystis aeruginosa NIES-843]
Length = 382
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEY--TQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
P Q+ + S + + + + ++ Q + + D I+ I
Sbjct: 296 PTTNQSAPVNLSPSLPLETSPAFNPAPPVNLEPRLAQVYQLFDRDALLFDIIVEKMQIPT 355
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
V +LLEL+L G + P +
Sbjct: 356 SEVAGILLELELMGLVTQLPGMRY 379
>gi|291327311|ref|ZP_06127796.2| DNA protecting protein DprA [Providencia rettgeri DSM 1131]
gi|291310852|gb|EFE51305.1| DNA protecting protein DprA [Providencia rettgeri DSM 1131]
Length = 361
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ I P +I + +D I T I + +L E+++ G +
Sbjct: 295 ELPIEQAPLEFNVVENKILGMVGYQATPVDVIAEQTQIPVTQIITILTEMEINGVVSSGA 354
Query: 82 EGKVSLT 88
G +T
Sbjct: 355 GGYTRVT 361
>gi|57238947|ref|YP_180083.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|58578880|ref|YP_197092.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|57161026|emb|CAH57932.1| putative DNA processing protein chain A [Ehrlichia ruminantium str.
Welgevonden]
gi|58417506|emb|CAI26710.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
Length = 375
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q + + P+ I++II T + + L+EL+ + ++ P KV L
Sbjct: 318 DNAKNLILQHITHSPVKIEEIITSTNLSISTTLIALMELETSHKIERLPNNKVML 372
>gi|212709013|ref|ZP_03317141.1| hypothetical protein PROVALCAL_00045 [Providencia alcalifaciens DSM
30120]
gi|212688379|gb|EEB47907.1| hypothetical protein PROVALCAL_00045 [Providencia alcalifaciens DSM
30120]
Length = 369
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
RI + +D I + + VL EL++ G + G + ++
Sbjct: 317 ESRILGMVGYQSTPVDIIAAQLQLPITQIISVLTELEINGVISSAAGGYIKVS 369
>gi|58580206|ref|YP_199222.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84622201|ref|YP_449573.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58424800|gb|AAW73837.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84366141|dbj|BAE67299.1| DNA processing chain A [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 380
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 11 FSSQSDTNHTKNINITHY--PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ T P + + R+ Q+L + P +D ++ T + A + +L
Sbjct: 301 LRERLAAPTELPRKTTAGAGPARSDPDYQRLWQALGHDPTPMDSLVQRTELTAAALSSML 360
Query: 69 LELDLAGRLCHHPEGKVS 86
L ++L G +
Sbjct: 361 LIMELEGDVVTEHGRYTR 378
>gi|303237995|ref|ZP_07324538.1| putative DNA protecting protein DprA [Prevotella disiens
FB035-09AN]
gi|302481785|gb|EFL44837.1| putative DNA protecting protein DprA [Prevotella disiens
FB035-09AN]
Length = 375
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ H I T +P E +I ++L + + I+ + T + + +L EL++
Sbjct: 301 LEKAHQNGIERTLFP-TLTEEEKQIVEALQTHNDLQINMLSVQTNLPIARLTALLFELEM 359
Query: 74 AGRLCHHPEGKVSL 87
G + G L
Sbjct: 360 KGIIRTMAGGCYHL 373
>gi|189183183|ref|YP_001936968.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
gi|189179954|dbj|BAG39734.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
Length = 386
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T +R +K L++VP+ I+ I++ T + +V +++LEL+LAG + K+ +
Sbjct: 324 TDDQRTIVKNILSSVPLDIEVIVNQTKLPMNIVNVIILELELAGIVARCLGNKIVI 379
>gi|148284625|ref|YP_001248715.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
gi|146740064|emb|CAM80189.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 386
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
T +R +K L++VP+ I+ I++ T + +V +++LEL+LAG + K+ +
Sbjct: 324 TDDQRTIVKNILSSVPLDIEVIVNQTKLPMNIVNVIILELELAGIVARCLGNKIVI 379
>gi|187935056|ref|YP_001885453.1| DNA uptake protein [Clostridium botulinum B str. Eklund 17B]
gi|187723209|gb|ACD24430.1| DNA uptake protein [Clostridium botulinum B str. Eklund 17B]
Length = 352
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E+ I + + PIHIDDI + ++ +Y +L E+ + + P
Sbjct: 297 PEKREILDMITDAPIHIDDIFKKSCVDRGALYALLFEMQIKNEIICLPGNYY 348
>gi|241667272|ref|ZP_04754850.1| DNA processing protein DprA [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254875823|ref|ZP_05248533.1| DNA processing protein dprA [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254841844|gb|EET20258.1| DNA processing protein dprA [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 366
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I + ID I+ + + + +L EL+L + P G +
Sbjct: 310 LSNSEKVILDIIGQGLTTIDKIVTESKLPYMEITPILFELELKSLIESVPGGYI 363
>gi|167626698|ref|YP_001677198.1| DNA processing protein DprA [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596699|gb|ABZ86697.1| DNA processing protein DprA [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 288
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I + ID I+ + + + +L EL+L + P G +
Sbjct: 232 LSNSEKVILDIIGQGLTTIDKIVTESKLPYMEITPILFELELKSLIESVPGGYI 285
>gi|71898891|ref|ZP_00681058.1| SMF protein [Xylella fastidiosa Ann-1]
gi|71731303|gb|EAO33367.1| SMF protein [Xylella fastidiosa Ann-1]
Length = 381
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + D + P + + Q+L + P+ +D +I TG+
Sbjct: 296 LAAPLAHT--LRERLDAPSWPGAPLLSTPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLT 353
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
A + +LL L+L G++
Sbjct: 354 AATLSSMLLTLELEGKVVVEHGRYTR 379
>gi|288800404|ref|ZP_06405862.1| DNA processing protein DprA [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332617|gb|EFC71097.1| DNA processing protein DprA [Prevotella sp. oral taxon 299 str.
F0039]
Length = 378
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S + K I +P + ++ L + + I+ ++ T + + VL EL
Sbjct: 301 SLLNKAKEKGIERELFP-TLNADEQKVVDILKKHNNLQINILLAQTDLSIGKLSAVLFEL 359
Query: 72 DLAGRLCHHPEGKVSLTM 89
++ G + G L M
Sbjct: 360 EMKGIVRAMAGGSYHLLM 377
>gi|323493840|ref|ZP_08098958.1| Smf protein [Vibrio brasiliensis LMG 20546]
gi|323311974|gb|EGA65120.1| Smf protein [Vibrio brasiliensis LMG 20546]
Length = 372
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ ++ + I +D + + T I V + LLEL+L+G + G +
Sbjct: 320 QLLANVGSKAIPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYI 367
>gi|206579194|ref|YP_002236312.1| DNA protecting protein DprA [Klebsiella pneumoniae 342]
gi|206568252|gb|ACI10028.1| DNA protecting protein DprA [Klebsiella pneumoniae 342]
Length = 360
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ + +D + G PV LLEL+LAG + P G V
Sbjct: 312 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGGYVR 360
>gi|251779444|ref|ZP_04822364.1| DNA protecting protein DprA [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083759|gb|EES49649.1| DNA protecting protein DprA [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 352
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E+ I + + P HIDDI + ++ +Y +L E+ + + P
Sbjct: 297 PEKREILDMITDAPTHIDDIFKKSCVDRGALYALLFEMQIKNEIICLPGNYY 348
>gi|188589719|ref|YP_001920600.1| DNA protecting protein DprA [Clostridium botulinum E3 str. Alaska
E43]
gi|188500000|gb|ACD53136.1| DNA protecting protein DprA [Clostridium botulinum E3 str. Alaska
E43]
Length = 352
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E+ I + + P HIDDI + ++ +Y +L E+ + + P
Sbjct: 297 PEKREILDMITDAPTHIDDIFKKSCVDRGALYALLFEMQIKNEIICLPGNYY 348
>gi|94970368|ref|YP_592416.1| DNA processing protein DprA, putative [Candidatus Koribacter
versatilis Ellin345]
gi|94552418|gb|ABF42342.1| DNA protecting protein DprA [Candidatus Koribacter versatilis
Ellin345]
Length = 385
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTG--IEAP 62
I ++ T + ++ L + +HID++I + +
Sbjct: 299 IRLQIPPPEALATETPQAASLFDQHEMPAQERKVYALLRADESMHIDELIEKLDGRLSSA 358
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLTM 89
++ L EL++A ++ P +M
Sbjct: 359 EIFSALFELEMASKIRQMPGKYYVRSM 385
>gi|34540135|ref|NP_904614.1| DNA processing protein DprA [Porphyromonas gingivalis W83]
gi|34396447|gb|AAQ65513.1| DNA processing protein DprA, putative [Porphyromonas gingivalis
W83]
Length = 374
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVV 64
Q+ + ++ T + + L +D++ TG+ V
Sbjct: 291 SAQDVLTLLDWSSTIDAKPQTLNFRPDSWPDTPVAECLLRAGTASVDELTRATGLPINDV 350
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L +L+L G + P G S+
Sbjct: 351 SAQLFDLELDGLVQSQPGGIYSV 373
>gi|114330415|ref|YP_746637.1| DNA protecting protein DprA [Nitrosomonas eutropha C91]
gi|114307429|gb|ABI58672.1| DNA protecting protein DprA [Nitrosomonas eutropha C91]
Length = 373
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQC--ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
Q + + + + + + + I ID + +G+ V +
Sbjct: 292 QPIQQIEAAPVNHNETGGLVDASSDCIDDTGLLIYFDYDSIDIDTLCIRSGLTVEAVSAM 351
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LL L+L G++ P G+
Sbjct: 352 LLILELEGKIGSLPGGRYQR 371
>gi|160939767|ref|ZP_02087114.1| hypothetical protein CLOBOL_04658 [Clostridium bolteae ATCC
BAA-613]
gi|158437201|gb|EDP14966.1| hypothetical protein CLOBOL_04658 [Clostridium bolteae ATCC
BAA-613]
Length = 390
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ L++ P H++ I+ TG+ A LLEL+L G
Sbjct: 336 EKMVYSCLDSEPRHLEQIMVQTGLSAGRCMSALLELELEGFAVRTSG 382
>gi|285019620|ref|YP_003377331.1| DNA processing chain a protein [Xanthomonas albilineans GPE PC73]
gi|283474838|emb|CBA17337.1| putative dna processing chain a protein [Xanthomonas albilineans]
Length = 384
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 34/85 (40%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ Q+ + S + P++ + + Q+L + P+ +D +I +G+ A
Sbjct: 298 LAAQLADALRTRLSPPTQGTTVERRTTPDFPNPDYQNLWQALGHDPLCMDSLITRSGLTA 357
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVS 86
V +LL ++L G +
Sbjct: 358 AAVSSMLLTMELDGYVAVERGRYTR 382
>gi|297180812|gb|ADI17018.1| predicted rossmann fold nucleotide-binding protein involved in DNA
uptake [uncultured Vibrionales bacterium HF0010_22E23]
Length = 366
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ N +D + + + LLEL+L G + P G V
Sbjct: 315 LLANVGNEATCVDVLAEICDQPVHEIMMQLLELELQGFVSAVPGGYVR 362
>gi|293602355|ref|ZP_06684801.1| DNA protecting protein DprA [Achromobacter piechaudii ATCC 43553]
gi|292819117|gb|EFF78152.1| DNA protecting protein DprA [Achromobacter piechaudii ATCC 43553]
Length = 370
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ P+H+D I +GI + L+EL+L GRL +G+
Sbjct: 318 HPVLDAMGYDPLHLDAIFARSGIAIDALQAQLVELELQGRLARLDDGRYQR 368
>gi|37681407|ref|NP_936016.1| Smf protein [Vibrio vulnificus YJ016]
gi|37200159|dbj|BAC95987.1| Smf protein [Vibrio vulnificus YJ016]
Length = 367
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ N +D + + T I V + LLEL+L+G + G +
Sbjct: 316 LLANVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRR 364
>gi|99082178|ref|YP_614332.1| DNA processing protein DprA, putative [Ruegeria sp. TM1040]
gi|99038458|gb|ABF65070.1| DNA processing protein DprA putative [Ruegeria sp. TM1040]
Length = 382
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 26/84 (30%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P S + T +I L P +I G A
Sbjct: 295 LPPLNAHRPPQRPSVQDLPSPPPERRNLRQTAALHQQILDRLAAAPTPEGQLIKDLGSPA 354
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
V VL +L+L+G + P G +
Sbjct: 355 RKVRTVLTDLELSGEIGREPGGVI 378
>gi|149197252|ref|ZP_01874304.1| SMF family protein involved in DNA uptake [Lentisphaera araneosa
HTCC2155]
gi|149139798|gb|EDM28199.1| SMF family protein involved in DNA uptake [Lentisphaera araneosa
HTCC2155]
Length = 380
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T+ + RI + L + +H+D I + + V LL L+ +
Sbjct: 306 TEKQENREFDLQLDENERRIMEILKSGELHVDKICELSELNVGQVLATLLGLETHKLIRL 365
Query: 80 HPEGKVSLT 88
P K LT
Sbjct: 366 LPGKKYELT 374
>gi|108804233|ref|YP_644170.1| DNA processing protein DprA [Rubrobacter xylanophilus DSM 9941]
gi|108765476|gb|ABG04358.1| DNA processing protein DprA, putative [Rubrobacter xylanophilus DSM
9941]
Length = 368
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +L P D++ G+ V L L+L G + G
Sbjct: 314 AAVLGALGFEPAPADEVAQRCGLAMGQVLSALSMLELKGYVVRDAGG 360
>gi|28199636|ref|NP_779950.1| DNA processing chain A [Xylella fastidiosa Temecula1]
gi|182682381|ref|YP_001830541.1| DNA protecting protein DprA [Xylella fastidiosa M23]
gi|28057751|gb|AAO29599.1| DNA processing chain A [Xylella fastidiosa Temecula1]
gi|182632491|gb|ACB93267.1| DNA protecting protein DprA [Xylella fastidiosa M23]
gi|307578663|gb|ADN62632.1| DNA protecting protein DprA [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 381
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + D + P + + Q+L + P+ +D +I TG+
Sbjct: 296 LAAPLAHT--LRERLDAPSWPVAPLLSTPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLT 353
Query: 61 APVVYLVLLELDLAGRLCHHPEGK 84
A + +LL L+L G++
Sbjct: 354 AATLSSMLLTLELEGKVVVEHGRY 377
>gi|297570259|ref|YP_003691603.1| DNA protecting protein DprA [Desulfurivibrio alkaliphilus AHT2]
gi|296926174|gb|ADH86984.1| DNA protecting protein DprA [Desulfurivibrio alkaliphilus AHT2]
Length = 381
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + L++ P I++II G+ A V VLLEL+L G + P +
Sbjct: 323 PPLTNEAATVLAVLDDYPKAIEEIITQAGMAARQVNAVLLELELQGLIESEPGPQYR 379
>gi|220923237|ref|YP_002498539.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
gi|219947844|gb|ACL58236.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
Length = 391
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E +FF + +R R+ L P+ ID + G+ A V
Sbjct: 310 ETDFFGDGAAPAPVPLGFEEAEAPIPGSDRARLLALLGPAPVAIDALARQAGLPARAVQG 369
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LLEL+L G + H G VSL
Sbjct: 370 LLLELELDGLVARHGGGTVSL 390
>gi|262089745|gb|ACY24839.1| Smf protein [uncultured organism]
Length = 382
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ ++ P++IDD++ TGI V ++ L++ G + G
Sbjct: 327 LSPAEQQLIYAMGYDPVNIDDLVERTGIAVGSVAAQMIGLEIKGYVQQIGAGY 379
>gi|150016069|ref|YP_001308323.1| DNA protecting protein DprA [Clostridium beijerinckii NCIMB 8052]
gi|149902534|gb|ABR33367.1| DNA protecting protein DprA [Clostridium beijerinckii NCIMB 8052]
Length = 351
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E+ I + + + PIHIDDI +T ++ +Y +L E+ + + P
Sbjct: 296 PEKSEILELITDSPIHIDDIFKNTSVDRGALYALLFEMQIKSEIICLPGNYY 347
>gi|295696103|ref|YP_003589341.1| DNA protecting protein DprA [Bacillus tusciae DSM 2912]
gi|295411705|gb|ADG06197.1| DNA protecting protein DprA [Bacillus tusciae DSM 2912]
Length = 384
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 28/81 (34%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + + + I + R+ +L D I TG+ +
Sbjct: 296 AAEYPHWPAALAASADGEIENQVPRRTVDSDSRRVLAALEEGCRTPDLIAGRTGLRLEHI 355
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
VL +L+LAGR+ P G
Sbjct: 356 SRVLTDLELAGRIYREPGGLY 376
>gi|255012004|ref|ZP_05284130.1| putative DNA processing Smf-like protein [Bacteroides fragilis
3_1_12]
gi|313149841|ref|ZP_07812034.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313138608|gb|EFR55968.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 373
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +RI L + I+ ++ I + ++L EL++ G + G L
Sbjct: 313 PDLSAEELRIVDILGRLGDLQINALMVQADIPINKISVILFELEMKGVIRVLAGGVYQL 371
>gi|114799220|ref|YP_760845.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
gi|114739394|gb|ABI77519.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
Length = 371
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 33/89 (37%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + + E R++++L+ + +D+I G+
Sbjct: 283 VLEVLSALPLLRVSAPPAELYDAAHGGGEAIPPSELARVREALSPHAMPLDEIARAAGVS 342
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTM 89
A +L+EL+LAG P G + +
Sbjct: 343 AARAGAILMELELAGEAITFPGGMAARAV 371
>gi|71276451|ref|ZP_00652727.1| SMF protein [Xylella fastidiosa Dixon]
gi|71901276|ref|ZP_00683375.1| SMF protein [Xylella fastidiosa Ann-1]
gi|170731002|ref|YP_001776435.1| DNA processing chain A [Xylella fastidiosa M12]
gi|71162767|gb|EAO12493.1| SMF protein [Xylella fastidiosa Dixon]
gi|71728967|gb|EAO31099.1| SMF protein [Xylella fastidiosa Ann-1]
gi|167965795|gb|ACA12805.1| DNA processing chain A [Xylella fastidiosa M12]
Length = 381
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
+ P + D + P + + Q+L + P+ +D +I TG+
Sbjct: 296 LAAPLAHT--LRERLDAPSWPVAPLLSTPNSKDPKYHTLWQALAHDPMSMDSLIGRTGLT 353
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
A + +LL L+L G++
Sbjct: 354 AATLSSMLLTLELEGKVVVEHGRYTR 379
>gi|170756418|ref|YP_001781981.1| DNA protecting protein DprA [Clostridium botulinum B1 str. Okra]
gi|169121630|gb|ACA45466.1| DNA protecting protein DprA [Clostridium botulinum B1 str. Okra]
Length = 361
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQAKVYNVLSHEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEVICLAGNYY 358
>gi|153940771|ref|YP_001391736.1| DNA protecting protein DprA [Clostridium botulinum F str.
Langeland]
gi|152936667|gb|ABS42165.1| DNA protecting protein DprA [Clostridium botulinum F str.
Langeland]
gi|295319762|gb|ADG00140.1| DNA protecting protein DprA [Clostridium botulinum F str. 230613]
Length = 361
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQAKVYNVLSHEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEVICLAGNYY 358
>gi|148269810|ref|YP_001244270.1| DNA protecting protein DprA [Thermotoga petrophila RKU-1]
gi|147735354|gb|ABQ46694.1| DNA protecting protein DprA [Thermotoga petrophila RKU-1]
Length = 337
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ +I L + P +D+++ G V V+ E++L G + G L
Sbjct: 277 ASPSLDDDKKKIYDLLRSSPKTVDELVEELGWSVSEVLRVISEMELMGMIW-FDGGAYRL 335
>gi|309791245|ref|ZP_07685776.1| DNA protecting protein DprA [Oscillochloris trichoides DG6]
gi|308226671|gb|EFO80368.1| DNA protecting protein DprA [Oscillochloris trichoides DG6]
Length = 361
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + ++ L+ P ID+I G+ A V L
Sbjct: 284 ILESLNLTTAAVQQEARSELPSDPTEAKLLDLLSYEPQAIDEIGRAMGMRAGEVAATLAV 343
Query: 71 LDLAGRLCH 79
L+L G +
Sbjct: 344 LELKGLVRQ 352
>gi|328676429|gb|AEB27299.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Francisella cf. novicida Fx1]
Length = 368
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNESERIILGSIDKELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|284037272|ref|YP_003387202.1| DNA protecting protein DprA [Spirosoma linguale DSM 74]
gi|283816565|gb|ADB38403.1| DNA protecting protein DprA [Spirosoma linguale DSM 74]
Length = 370
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
QS + ++ + P E +I L +H+D++ + I + +LL L+
Sbjct: 293 QSSGSASRTKTLPALPVSITEEESQILALLRQVTDLHVDELSWKSQIPMGRLASLLLTLE 352
Query: 73 LAGRLCHHPEGKVSL 87
G + P K ++
Sbjct: 353 FQGFIRSLPGKKYAV 367
>gi|281424761|ref|ZP_06255674.1| DNA protecting protein DprA [Prevotella oris F0302]
gi|281401131|gb|EFB31962.1| DNA protecting protein DprA [Prevotella oris F0302]
Length = 375
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + I +PE E +I L + I+ + T + + +L L++
Sbjct: 301 LNRARNEGIERQLFPE-LSSEEQQIVTVLQRENDLQINLLTLKTNLPIARLTALLFTLEM 359
Query: 74 AGRLCHHPEGKVSL 87
G + P G L
Sbjct: 360 KGVVKALPGGSYHL 373
>gi|282880522|ref|ZP_06289229.1| DNA protecting protein DprA [Prevotella timonensis CRIS 5C-B1]
gi|281305625|gb|EFA97678.1| DNA protecting protein DprA [Prevotella timonensis CRIS 5C-B1]
Length = 377
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 30 EYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E ++ +L + + I+ + I + +L L++ G L P G L
Sbjct: 316 PDLSAEERQVVSALKKHNDLQINMLSVQADIPIAHLTAILFSLEMKGVLKALPGGMYHLL 375
Query: 89 M 89
M
Sbjct: 376 M 376
>gi|188995531|ref|YP_001929783.1| putative DNA processing Smf-like protein [Porphyromonas gingivalis
ATCC 33277]
gi|188595211|dbj|BAG34186.1| putative DNA processing Smf-like protein [Porphyromonas gingivalis
ATCC 33277]
Length = 374
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVV 64
Q+ + ++ T + + L +D++ TG+ V
Sbjct: 291 SAQDVLTLLDWSSTIDAKPQTLNFRPDSWPDTPVAECLLRAGTASVDELTRATGLPINDV 350
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L +L+L G + P G S+
Sbjct: 351 SSQLFDLELDGLVQSQPGGIYSV 373
>gi|157827244|ref|YP_001496308.1| putative DNA processing protein DprA [Rickettsia bellii OSU 85-389]
gi|157802548|gb|ABV79271.1| Putative DNA processing protein DprA [Rickettsia bellii OSU 85-389]
Length = 223
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
K +N E ++ ER + L+ VPI D + T + P++Y ++LEL+LAG+ H
Sbjct: 153 KRLNTIQVKEPSEKERA--IELLSAVPIDFDYLQKMTELPLPIIYTIILELELAGKAMRH 210
Query: 81 PEGKVSL 87
P K+SL
Sbjct: 211 PSNKISL 217
>gi|281412306|ref|YP_003346385.1| DNA protecting protein DprA [Thermotoga naphthophila RKU-10]
gi|281373409|gb|ADA66971.1| DNA protecting protein DprA [Thermotoga naphthophila RKU-10]
Length = 337
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ +I L + P +D+++ G V V+ E++L G + G L
Sbjct: 277 ASPSLDDDKKKIYDLLRSSPKTVDELVEELGWSVSEVLRVISEMELMGMIW-FDGGAYRL 335
>gi|325281443|ref|YP_004253985.1| DNA protecting protein DprA [Odoribacter splanchnicus DSM 20712]
gi|324313252|gb|ADY33805.1| DNA protecting protein DprA [Odoribacter splanchnicus DSM 20712]
Length = 383
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 24 NITHYPEYTQCER-VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
T P ++ E+ + Q L+ N +HID++ T + + +LL+L+L G++
Sbjct: 317 QQTILPNFSDDEQGNTLIQLLSENGALHIDELCQLTQRPSSELAAILLQLELEGKIIGLA 376
Query: 82 EGKVSL 87
K SL
Sbjct: 377 GKKYSL 382
>gi|168700980|ref|ZP_02733257.1| DNA protecting protein DprA [Gemmata obscuriglobus UQM 2246]
Length = 396
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 12 SSQSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ T ++ P + R+ +L + H D++ G+ + +L++
Sbjct: 320 QEDAVTGRAVREDVPRPPAPILDVTQQRVFDALADK-RHADELARELGVAVGELSRILMQ 378
Query: 71 LDLAGRLCHHPEGKVSL 87
L+L L P
Sbjct: 379 LELKKVLRRLPGNFYER 395
>gi|295690151|ref|YP_003593844.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
gi|295432054|gb|ADG11226.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
Length = 365
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++ S + + + + E R R+ L+ P+ +D+I
Sbjct: 279 AEDVLRSLAGEARLRERDRAYEAEPPSDLDPDALRERVAALLSPTPVPRNDLIRAVAAPT 338
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
V L+EL LAGR G V+
Sbjct: 339 SAVMAALVELSLAGRAEFLDGGLVAR 364
>gi|208780407|ref|ZP_03247748.1| DNA protecting protein DprA, putative [Francisella novicida FTG]
gi|208743775|gb|EDZ90078.1| DNA protecting protein DprA, putative [Francisella novicida FTG]
Length = 368
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNESERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|290954217|ref|ZP_06558838.1| DNA processing protein DprA [Francisella tularensis subsp.
holarctica URFT1]
gi|295312381|ref|ZP_06803163.1| DNA processing protein DprA [Francisella tularensis subsp.
holarctica URFT1]
Length = 268
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 211 SLNESERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 265
>gi|254373799|ref|ZP_04989282.1| DNA processing protein DprA [Francisella novicida GA99-3548]
gi|151571520|gb|EDN37174.1| DNA processing protein DprA [Francisella novicida GA99-3548]
Length = 368
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNESERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|254372325|ref|ZP_04987816.1| DNA uptake protein [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570054|gb|EDN35708.1| DNA uptake protein [Francisella novicida GA99-3549]
Length = 368
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNESERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|118496955|ref|YP_898005.1| SMF family DNA uptake protein [Francisella tularensis subsp.
novicida U112]
gi|194324184|ref|ZP_03057958.1| DNA protecting protein DprA, putative [Francisella tularensis
subsp. novicida FTE]
gi|118422861|gb|ABK89251.1| DNA uptake protein, SMF family [Francisella novicida U112]
gi|194321631|gb|EDX19115.1| DNA protecting protein DprA, putative [Francisella tularensis
subsp. novicida FTE]
Length = 368
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNESERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|134302268|ref|YP_001122237.1| DNA processing protein DprA [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134050045|gb|ABO47116.1| DNA processing protein DprA [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 368
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I S++ ID II + + V +L EL+L + P G +
Sbjct: 311 SLNKSERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLIESIPGGYI 365
>gi|323697641|ref|ZP_08109553.1| DNA protecting protein DprA [Desulfovibrio sp. ND132]
gi|323457573|gb|EGB13438.1| DNA protecting protein DprA [Desulfovibrio desulfuricans ND132]
Length = 418
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ R+ L +HID + G ++P V VLL L++ G + P
Sbjct: 349 LNGDEKRVLDLLDGADKMHIDALGRELGWDSPTVSRVLLLLEMRGAVRQLPGMWYLARED 408
Query: 91 LPS 93
P+
Sbjct: 409 EPA 411
>gi|294675097|ref|YP_003575713.1| DNA protecting protein DprA [Prevotella ruminicola 23]
gi|294472375|gb|ADE81764.1| DNA protecting protein DprA [Prevotella ruminicola 23]
Length = 374
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
I +PE E +I L + I+ + H + V +L +L++ G
Sbjct: 302 QALAGGIERQLFPE-LSAEEQKIVSLLQQTNDLQINVLSVHANLSISQVTALLFQLEMKG 360
Query: 76 RLCHHPEGKVSL 87
+ G L
Sbjct: 361 VVKAMAGGTYHL 372
>gi|15643022|ref|NP_228064.1| DNA processing chain A [Thermotoga maritima MSB8]
gi|170288496|ref|YP_001738734.1| DNA protecting protein DprA [Thermotoga sp. RQ2]
gi|4980749|gb|AAD35341.1|AE001708_9 DNA processing chain A [Thermotoga maritima MSB8]
gi|170175999|gb|ACB09051.1| DNA protecting protein DprA [Thermotoga sp. RQ2]
Length = 337
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ +I L + P +D+++ G V V+ E++L G + G L
Sbjct: 277 ASPSLDDDKKKIYDLLRSSPKTVDELVEELGWSVSEVLRVISEMELMGMIW-FDGGAYRL 335
>gi|315178585|gb|ADT85499.1| Smf protein [Vibrio furnissii NCTC 11218]
Length = 371
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ +D + + T I V + LLEL+L+G + G +
Sbjct: 319 ELLANVGEEATPVDILANRTHIPVQDVMMQLLELELSGHVVAVSGGYIR 367
>gi|300087797|ref|YP_003758319.1| DNA protecting protein DprA [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527530|gb|ADJ25998.1| DNA protecting protein DprA [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 362
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE-GKVS 86
RI LN H+D+I TG V +L ++L G + +S
Sbjct: 306 ETEAERRIMGILNGQSKHVDEICRTTGETVATVSSLLAIMELKGLVKQLGGMNYIS 361
>gi|260771090|ref|ZP_05880018.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio furnissii CIP 102972]
gi|260613979|gb|EEX39170.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio furnissii CIP 102972]
Length = 371
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ +D + + T I V + LLEL+L+G + G +
Sbjct: 319 ELLANVGEEATPVDILANRTHIPVQDVMMQLLELELSGHVVAVSGGYIR 367
>gi|314987079|gb|EFT31171.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA2]
gi|314990721|gb|EFT34812.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA3]
Length = 253
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|149174899|ref|ZP_01853523.1| DNA processing chain A [Planctomyces maris DSM 8797]
gi|148846236|gb|EDL60575.1| DNA processing chain A [Planctomyces maris DSM 8797]
Length = 376
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
T H P I + P H+++I+ + +++ + L
Sbjct: 295 LGPAKTPVMTAKNREVHTPRELSLSEFERDILNLVTLEPQHLNEIVQSSNLDSSRILSTL 354
Query: 69 LELDLAGRLCHHPEGKVSLTM 89
L++ + P G + M
Sbjct: 355 TILEMRKVVKRLPGGYLVRAM 375
>gi|81299514|ref|YP_399722.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC
7942]
gi|81168395|gb|ABB56735.1| DNA processing protein DprA, putative [Synechococcus elongatus PCC
7942]
Length = 402
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 31/80 (38%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ + S + + + E+ ++ L++ PI DDI+ +G++
Sbjct: 316 LRQLPPLDPQSPPLMPSAVPSQEVEEAIADLSPEQAQVYALLSDQPISKDDIVEQSGLDF 375
Query: 62 PVVYLVLLELDLAGRLCHHP 81
V + L L++ G P
Sbjct: 376 HQVQIHLTHLEILGLAEVLP 395
>gi|56750836|ref|YP_171537.1| DNA processing protein [Synechococcus elongatus PCC 6301]
gi|56685795|dbj|BAD79017.1| DNA processing protein [Synechococcus elongatus PCC 6301]
Length = 406
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 31/80 (38%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ + S + + + E+ ++ L++ PI DDI+ +G++
Sbjct: 320 LRQLPPLDPQSPPLMPSAVPSQEVEEAIADLSPEQAQVYALLSDQPISKDDIVEQSGLDF 379
Query: 62 PVVYLVLLELDLAGRLCHHP 81
V + L L++ G P
Sbjct: 380 HQVQIHLTHLEILGLAEVLP 399
>gi|313764990|gb|EFS36354.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL013PA1]
gi|313815450|gb|EFS53164.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL059PA1]
gi|314916245|gb|EFS80076.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA4]
gi|314917515|gb|EFS81346.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA1]
gi|314921849|gb|EFS85680.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA3]
gi|314930888|gb|EFS94719.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL067PA1]
gi|314955318|gb|EFS99723.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL027PA1]
gi|314959190|gb|EFT03292.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA1]
gi|315099311|gb|EFT71287.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL059PA2]
gi|315102351|gb|EFT74327.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL046PA1]
gi|327454283|gb|EGF00938.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA3]
gi|327456348|gb|EGF03003.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL083PA2]
gi|328756041|gb|EGF69657.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA1]
gi|328758887|gb|EGF72503.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL025PA2]
Length = 252
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|298291505|ref|YP_003693444.1| DNA protecting protein DprA [Starkeya novella DSM 506]
gi|296928016|gb|ADH88825.1| DNA protecting protein DprA [Starkeya novella DSM 506]
Length = 369
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + PE ++ R + L VP+ +DD++ +G + ++LLEL+LAGRL
Sbjct: 301 EEEADAMDAPEPSEDARTHVLALLGPVPLPVDDLVVLSGASVGEIQILLLELELAGRLER 360
Query: 80 HPEGKVSL 87
HP G VSL
Sbjct: 361 HPGGAVSL 368
>gi|296108241|ref|YP_003619942.1| DNA processing enzyme DprA (SMF family) [Legionella pneumophila
2300/99 Alcoy]
gi|295650143|gb|ADG25990.1| DNA processing enzyme DprA (SMF family) [Legionella pneumophila
2300/99 Alcoy]
Length = 361
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + ID II +G V L EL+L G + P G +
Sbjct: 309 LVKFIGFETTTIDQIIGRSGYSMEQVTSGLAELELKGAVMAVPGGYIR 356
>gi|153954039|ref|YP_001394804.1| Smf protein [Clostridium kluyveri DSM 555]
gi|219854652|ref|YP_002471774.1| hypothetical protein CKR_1309 [Clostridium kluyveri NBRC 12016]
gi|146346920|gb|EDK33456.1| Predicted Smf protein [Clostridium kluyveri DSM 555]
gi|219568376|dbj|BAH06360.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 366
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+I + + +P +ID+I T I+ +Y +L EL L ++
Sbjct: 306 EEKILKIIGQIPRNIDEICRITNIDIKQLYELLFELQLKNKIICLSGNYY 355
>gi|289424388|ref|ZP_06426171.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK187]
gi|289155085|gb|EFD03767.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK187]
gi|313771172|gb|EFS37138.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL074PA1]
gi|313792536|gb|EFS40622.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA1]
gi|313803537|gb|EFS44719.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA2]
gi|313811802|gb|EFS49516.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL083PA1]
gi|313829015|gb|EFS66729.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL063PA2]
gi|313832338|gb|EFS70052.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL007PA1]
gi|313832797|gb|EFS70511.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL056PA1]
gi|313839656|gb|EFS77370.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL086PA1]
gi|314964247|gb|EFT08347.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA1]
gi|314975230|gb|EFT19325.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL053PA1]
gi|314977645|gb|EFT21740.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL045PA1]
gi|314985170|gb|EFT29262.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA1]
gi|315081613|gb|EFT53589.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL078PA1]
gi|315097130|gb|EFT69106.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL038PA1]
gi|315109833|gb|EFT81809.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL030PA2]
gi|327332534|gb|EGE74269.1| transcriptional regulator [Propionibacterium acnes HL096PA2]
gi|327334592|gb|EGE76303.1| transcriptional regulator [Propionibacterium acnes HL097PA1]
gi|327446688|gb|EGE93342.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL043PA2]
gi|327448870|gb|EGE95524.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL043PA1]
gi|327457380|gb|EGF04035.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL092PA1]
gi|328759732|gb|EGF73328.1| transcriptional regulator [Propionibacterium acnes HL099PA1]
Length = 252
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|315606821|ref|ZP_07881830.1| DNA processing protein DprA [Prevotella buccae ATCC 33574]
gi|315251486|gb|EFU31466.1| DNA processing protein DprA [Prevotella buccae ATCC 33574]
Length = 375
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
H K I +P E + L N + I+ + +G+ + +L +L++ G
Sbjct: 304 AHRKGIERQLFP-SLSPEEQAVVDVLQRNNDLQINMLSVQSGLTISRLTALLFQLEMKGV 362
Query: 77 LCHHPEGKVSLTM 89
+ G L M
Sbjct: 363 IKPLAGGMYHLLM 375
>gi|153931310|ref|YP_001384613.1| DNA protecting protein DprA [Clostridium botulinum A str. ATCC
19397]
gi|153936174|ref|YP_001388130.1| DNA protecting protein DprA [Clostridium botulinum A str. Hall]
gi|168180681|ref|ZP_02615345.1| DNA protecting protein DprA [Clostridium botulinum NCTC 2916]
gi|226949791|ref|YP_002804882.1| DNA protecting protein DprA [Clostridium botulinum A2 str. Kyoto]
gi|152927354|gb|ABS32854.1| DNA protecting protein DprA [Clostridium botulinum A str. ATCC
19397]
gi|152932088|gb|ABS37587.1| DNA protecting protein DprA [Clostridium botulinum A str. Hall]
gi|182668507|gb|EDT80486.1| DNA protecting protein DprA [Clostridium botulinum NCTC 2916]
gi|226843761|gb|ACO86427.1| DNA protecting protein DprA [Clostridium botulinum A2 str. Kyoto]
gi|322806704|emb|CBZ04273.1| crossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Clostridium botulinum H04402 065]
Length = 361
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQAKVYNVLSDEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEIICLAGNYY 358
>gi|148380396|ref|YP_001254937.1| DNA protecting protein DprA [Clostridium botulinum A str. ATCC
3502]
gi|148289880|emb|CAL83988.1| SMF family protein [Clostridium botulinum A str. ATCC 3502]
Length = 361
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQAKVYNVLSDEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEIICLAGNYY 358
>gi|295129562|ref|YP_003580225.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK137]
gi|291375552|gb|ADD99406.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK137]
Length = 252
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|148358669|ref|YP_001249876.1| DNA processing enzyme DprA [Legionella pneumophila str. Corby]
gi|148280442|gb|ABQ54530.1| DNA processing enzyme DprA (SMF family) [Legionella pneumophila
str. Corby]
Length = 361
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + ID II +G V L EL+L G + P G +
Sbjct: 309 LVKFIGFETTTIDQIIGRSGYSMEQVTSGLAELELKGAVMAVPGGYIR 356
>gi|315083115|gb|EFT55091.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL027PA2]
gi|328757941|gb|EGF71557.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL020PA1]
Length = 253
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|289427481|ref|ZP_06429194.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J165]
gi|289159411|gb|EFD07602.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J165]
gi|313806890|gb|EFS45388.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA2]
gi|313814189|gb|EFS51903.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL025PA1]
gi|314980223|gb|EFT24317.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL072PA2]
gi|315088047|gb|EFT60023.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL072PA1]
gi|327333707|gb|EGE75424.1| transcriptional regulator [Propionibacterium acnes HL096PA3]
gi|327444434|gb|EGE91088.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL013PA2]
Length = 252
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|291514827|emb|CBK64037.1| DNA protecting protein DprA [Alistipes shahii WAL 8301]
Length = 366
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
N PE + + + P+ ++ + TG+ + +L+ L+LAG
Sbjct: 295 ENPATLRAKPPTPE-LTPDEAGLLGCFRTDDPLSVEALGELTGLNPGELATLLVGLELAG 353
Query: 76 RLCHHPEGKV 85
+ P +
Sbjct: 354 AVRQLPGNRY 363
>gi|331269644|ref|YP_004396136.1| DNA uptake protein [Clostridium botulinum BKT015925]
gi|329126194|gb|AEB76139.1| DNA uptake protein [Clostridium botulinum BKT015925]
Length = 359
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E ++ + +N+VPIH D+++ T I+ +Y VL EL L +
Sbjct: 299 MSIEETKVYKHINSVPIHFDEVLRLTNIDIKQLYEVLFELQLKDEIMCLSGNYYVRN 355
>gi|170758557|ref|YP_001787750.1| DNA protecting protein DprA [Clostridium botulinum A3 str. Loch
Maree]
gi|169405546|gb|ACA53957.1| DNA protecting protein DprA [Clostridium botulinum A3 str. Loch
Maree]
Length = 361
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQGKVYNVLSHEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEVICLAGNYY 358
>gi|288925389|ref|ZP_06419323.1| DNA processing protein DprA [Prevotella buccae D17]
gi|288337860|gb|EFC76212.1| DNA processing protein DprA [Prevotella buccae D17]
Length = 375
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
H K I +P E + L N + I+ + +G+ + +L +L++ G
Sbjct: 304 AHRKGIERQLFP-SLSPEEQAVVDVLQRNNDLQINMLSVQSGLTISRLTALLFQLEMKGV 362
Query: 77 LCHHPEGKVSLTM 89
+ G L M
Sbjct: 363 IKPLAGGMYHLLM 375
>gi|256823829|ref|YP_003147792.1| DNA protecting protein DprA [Kangiella koreensis DSM 16069]
gi|256797368|gb|ACV28024.1| DNA protecting protein DprA [Kangiella koreensis DSM 16069]
Length = 363
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ E I Q +++ D II +G+E VV +LL L+L + P G
Sbjct: 307 LEKEYQEILQYVDDSTTSADTIIQRSGLEIEVVSHMLLLLELNNYIASVPGGY 359
>gi|50841523|ref|YP_054750.1| transcriptional regulator [Propionibacterium acnes KPA171202]
gi|50839125|gb|AAT81792.1| transcriptional regulator [Propionibacterium acnes KPA171202]
gi|313817674|gb|EFS55388.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL046PA2]
gi|313821499|gb|EFS59213.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA1]
gi|313824556|gb|EFS62270.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA2]
gi|314926301|gb|EFS90132.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA3]
gi|314961694|gb|EFT05795.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA2]
gi|315086644|gb|EFT58620.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA3]
gi|315107465|gb|EFT79441.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL030PA1]
Length = 252
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|162453392|ref|YP_001615759.1| DNA processing chain A [Sorangium cellulosum 'So ce 56']
gi|161163974|emb|CAN95279.1| DNA processing chain A [Sorangium cellulosum 'So ce 56']
Length = 350
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 23/82 (28%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ P + +L+ P H+D++ TG+ L
Sbjct: 269 PLPEAALGARTGVLPEENGPPPSMSAAERAVLDALDARPAHVDEVCERTGLPPRRAVEAL 328
Query: 69 LELDLAGRLCHHPEGKVSLTMH 90
L L L + P G +
Sbjct: 329 LTLTLQAVVVEGPAGLFRRALR 350
>gi|260172928|ref|ZP_05759340.1| Smf protein DNA processing chain A [Bacteroides sp. D2]
gi|315921211|ref|ZP_07917451.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695086|gb|EFS31921.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 374
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYT----QCERVRIKQSLNNVP-IHIDDIIHHTGI 59
++ + T + + E +I L + I+ ++ I
Sbjct: 285 LSAEDLVQAMGWNIPTTSSEKVNVQRSLFLDLSEEEQKIVSILEKQGNLQINSLVVEADI 344
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L EL++ G + G L
Sbjct: 345 PVHKINAILFELEMKGVVRVLAGGMYQL 372
>gi|84501687|ref|ZP_00999859.1| DNA processing protein DprA, putative [Oceanicola batsensis
HTCC2597]
gi|84390308|gb|EAQ02867.1| DNA processing protein DprA, putative [Oceanicola batsensis
HTCC2597]
Length = 77
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 23/69 (33%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
P T I L PI D +I A V + +L++ GR+
Sbjct: 5 PETPAPEARDPAQTAALHREILDRLGPAPIAEDQLIRDLSRAARHVTPAITQLEMQGRVR 64
Query: 79 HHPEGKVSL 87
G ++L
Sbjct: 65 RQAGGLLAL 73
>gi|254422740|ref|ZP_05036458.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335]
gi|196190229|gb|EDX85193.1| DNA protecting protein DprA, putative [Synechococcus sp. PCC 7335]
Length = 411
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 29/76 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S+ + ++ + +++ P +D I+ T +E +V L +L+
Sbjct: 336 ETSEALEINSTDLKKAISELTPVLANVLEAVAIEPTIVDYIVQQTQMETGIVLSALFQLE 395
Query: 73 LAGRLCHHPEGKVSLT 88
L+G + P +
Sbjct: 396 LSGMVIQLPGMQYQRA 411
>gi|187778969|ref|ZP_02995442.1| hypothetical protein CLOSPO_02564 [Clostridium sporogenes ATCC
15579]
gi|187772594|gb|EDU36396.1| hypothetical protein CLOSPO_02564 [Clostridium sporogenes ATCC
15579]
Length = 361
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQGKVYNVLSHEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEIICLAGNYY 358
>gi|168184644|ref|ZP_02619308.1| DNA protecting protein DprA [Clostridium botulinum Bf]
gi|237795874|ref|YP_002863426.1| DNA protecting protein DprA [Clostridium botulinum Ba4 str. 657]
gi|182672290|gb|EDT84251.1| DNA protecting protein DprA [Clostridium botulinum Bf]
gi|229263394|gb|ACQ54427.1| DNA protecting protein DprA [Clostridium botulinum Ba4 str. 657]
Length = 361
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L++ P HIDD++ I+ +Y VL EL L +
Sbjct: 306 DSLQGKVYNVLSHEPKHIDDLLKLMDIDIKHLYEVLFELQLKKEIICLAGNYY 358
>gi|330831508|ref|YP_004394460.1| DNA processing chain A [Aeromonas veronii B565]
gi|328806644|gb|AEB51843.1| DNA processing chain A [Aeromonas veronii B565]
Length = 371
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
++ + P ++ + +++ +D + + VV L+EL+LAG +
Sbjct: 297 PHSSVIPSEQPHNSELPYADLLDNVDYETTSVDTVAERAQLPVEVVLGRLVELELAGAVM 356
Query: 79 HHPEGKVS 86
G V
Sbjct: 357 AVAGGYVR 364
>gi|255524245|ref|ZP_05391204.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|296185366|ref|ZP_06853776.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|255512070|gb|EET88351.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|296050200|gb|EFG89624.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
Length = 359
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I S+ + P HIDDI T ++ +Y VL EL L + +
Sbjct: 299 MTSIEKKIYDSITDTPAHIDDIFERTNVDIKQLYEVLFELQLRDEVICISGNYYAR 354
>gi|328905809|gb|EGG25585.1| transcriptional regulator, DeoR family [Propionibacterium sp.
P08]
Length = 252
Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 7 QKMIINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 66
>gi|320103360|ref|YP_004178951.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644]
gi|319750642|gb|ADV62402.1| DNA protecting protein DprA [Isosphaera pallida ATCC 43644]
Length = 453
Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 3 HPQIEQNFFSSQSDTNHTK----NINITHYPEYTQCERVRI-KQSLNNVPIHIDDIIHHT 57
HP + +N +N P ER RI +++ +HID II +
Sbjct: 362 HPTLNKNETQPDPSSNSHSHNRGASTEPVPPGLILSERERIVWETIGTATLHIDAIIAQS 421
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
G++ L L+L + P +
Sbjct: 422 GLDPGSAMATLATLELRRLIGRQPGQMFAR 451
>gi|307822753|ref|ZP_07652984.1| DNA protecting protein DprA [Methylobacter tundripaludum SV96]
gi|307736357|gb|EFO07203.1| DNA protecting protein DprA [Methylobacter tundripaludum SV96]
Length = 350
Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
Q+ S N I + E+ + + P ID ++ + V+
Sbjct: 268 QDILEELSQYNQQDEIFSPLTMQSTLDLEQQTLLNLVMFSPTSIDTLVENANESVEVISS 327
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LL L+L G + G +
Sbjct: 328 MLLILELQGYIEASAGGCYTR 348
>gi|317504339|ref|ZP_07962325.1| DNA protecting protein DprA [Prevotella salivae DSM 15606]
gi|315664530|gb|EFV04211.1| DNA protecting protein DprA [Prevotella salivae DSM 15606]
Length = 375
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + I +PE E + +L I+ + T + + +L L++
Sbjct: 301 LNRARNEGIERQLFPE-LSNEEQLVVTALQQENDQQINLLAVKTNLPIARLTALLFTLEM 359
Query: 74 AGRLCHHPEGKVSL 87
G + G L
Sbjct: 360 KGVVKALAGGSYHL 373
>gi|239626521|ref|ZP_04669552.1| smf family protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516667|gb|EEQ56533.1| smf family protein [Clostridiales bacterium 1_7_47FAA]
Length = 328
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+ L++ P H++ I TGI L EL+L G M P
Sbjct: 272 EKMVYSCLDSEPRHLEQIAMQTGIPVSQCMSTLCELELGGFALRTNGQCYIRRMTQP 328
>gi|218258323|ref|ZP_03474725.1| hypothetical protein PRABACTJOHN_00380 [Parabacteroides johnsonii
DSM 18315]
gi|218225563|gb|EEC98213.1| hypothetical protein PRABACTJOHN_00380 [Parabacteroides johnsonii
DSM 18315]
Length = 371
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q+ + + + + E+ + + IHI+++ + + +L EL+
Sbjct: 296 QATATPAQTELLFADTDVSVPEQNPVLAIMRTRNEIHINELALVLEMPVHQLSTLLFELE 355
Query: 73 LAGRLCHHPEGKVSLT 88
+ G++ P L+
Sbjct: 356 INGKIKALPGNIYKLS 371
>gi|282853073|ref|ZP_06262410.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|282582526|gb|EFB87906.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|314922714|gb|EFS86545.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL001PA1]
gi|314982942|gb|EFT27034.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA3]
gi|315091247|gb|EFT63223.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA4]
gi|315105202|gb|EFT77178.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA2]
Length = 252
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|73666848|ref|YP_302864.1| SMF protein [Ehrlichia canis str. Jake]
gi|72393989|gb|AAZ68266.1| SMF protein [Ehrlichia canis str. Jake]
Length = 374
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q +++ PI I++II T + + + L EL+ + ++ P KV+L
Sbjct: 321 KDIILQHISHSPIEIEEIITSTNLNISNILIALTELEESKKIERFPNNKVAL 372
>gi|239993912|ref|ZP_04714436.1| DNA protecting protein DprA [Alteromonas macleodii ATCC 27126]
Length = 369
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ S++ ID I I LLE +L G + P G V L
Sbjct: 316 DKLLASVDCDITAIDVIAQRNAISVSQAMASLLEYELRGLVAAVPGGYVKL 366
>gi|237806931|ref|YP_002891371.1| DNA protecting protein DprA [Tolumonas auensis DSM 9187]
gi|237499192|gb|ACQ91785.1| DNA protecting protein DprA [Tolumonas auensis DSM 9187]
Length = 374
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPV 63
IE+ + ++ + I P R+ ++ ++ ID I + +
Sbjct: 289 IIEEIGIFPRMVEHYGETGPIAEEPLSDLPFY-RLLDNVRSDEVTSIDVIAATSRLPVQE 347
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
V L+ L+L G + P G V
Sbjct: 348 VMTELITLELEGLILSVPGGYVR 370
>gi|325299438|ref|YP_004259355.1| DNA protecting protein DprA [Bacteroides salanitronis DSM 18170]
gi|324318991|gb|ADY36882.1| DNA protecting protein DprA [Bacteroides salanitronis DSM 18170]
Length = 370
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 30 EYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E RI Q + P I ++ ++ + I + +L EL+L G + G L
Sbjct: 310 PELNPEEARIVQIMRKYPEGIQVNSLVVESNIAITGMTGILFELELKGVVKSLAGGMYRL 369
>gi|78356624|ref|YP_388073.1| DNA processing protein DprA [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219029|gb|ABB38378.1| DNA processing protein DprA, putative [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 425
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ ++ L +HID + +A V LL L++AG + P
Sbjct: 361 TEPATSPADADGQKVLAVLARRGGLHIDVLCRELDWDAGRVSAALLLLEIAGSVRQAPGM 420
Query: 84 KVS 86
Sbjct: 421 LYC 423
>gi|299142014|ref|ZP_07035148.1| DNA processing protein DprA [Prevotella oris C735]
gi|298576476|gb|EFI48348.1| DNA processing protein DprA [Prevotella oris C735]
Length = 375
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + I +PE E +I L + I+ + T + + +L L++
Sbjct: 301 LNRARNEGIERQLFPE-LGSEEQQIVTVLQRENDLQINLLTLKTNLPIARLTALLFTLEM 359
Query: 74 AGRLCHHPEGKVSL 87
G + P G L
Sbjct: 360 KGVVKALPGGSYHL 373
>gi|225418683|ref|ZP_03761872.1| hypothetical protein CLOSTASPAR_05907 [Clostridium asparagiforme
DSM 15981]
gi|225041786|gb|EEG52032.1| hypothetical protein CLOSTASPAR_05907 [Clostridium asparagiforme
DSM 15981]
Length = 371
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ L++ P H+++I +G+ LL+L+L G + + +
Sbjct: 315 EKMVYSCLDSAPKHVEEIAVLSGMCVGECMSALLDLELGGLVVKTAGQYYARRV 368
>gi|118443914|ref|YP_878225.1| DNA uptake protein [Clostridium novyi NT]
gi|118134370|gb|ABK61414.1| DNA uptake protein [Clostridium novyi NT]
Length = 359
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ +N PIH D+++ T I+ +Y VL EL L +
Sbjct: 299 MTSIEDKVYNKINTTPIHFDEVLRLTNIDIKQLYEVLFELQLKDEIMCLSGNYYVRN 355
>gi|323705454|ref|ZP_08117029.1| DNA protecting protein DprA [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535356|gb|EGB25132.1| DNA protecting protein DprA [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 362
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E ++ ++ P I++I+ T V +L L + G + P K
Sbjct: 304 LSSEERKLYAIISECPRDIEEIVEITKFPISKVNYLLSSLTIKGLIVRLPGNKY 357
>gi|262273078|ref|ZP_06050895.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Grimontia hollisae CIP 101886]
gi|262222834|gb|EEY74142.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Grimontia hollisae CIP 101886]
Length = 365
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ N +D + + + LLEL+L G + P G V
Sbjct: 313 ELLANVGNEVRCVDVLAELCDQPVHEIMMQLLELELQGFVSAVPGGYVR 361
>gi|315079027|gb|EFT51039.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL053PA2]
Length = 244
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 2 IINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 58
>gi|242280185|ref|YP_002992314.1| DNA protecting protein DprA [Desulfovibrio salexigens DSM 2638]
gi|242123079|gb|ACS80775.1| DNA protecting protein DprA [Desulfovibrio salexigens DSM 2638]
Length = 402
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNIN--ITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIE 60
P + SS + KN + + I ++L + +HID+I G +
Sbjct: 314 PVKRDDKSSSPKAEDPAKNEPAVPAFDIDSLEPPEYDIAKALKSGGKLHIDEIARAAGFD 373
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
V V+L +++ G + P L
Sbjct: 374 VSVAGAVILGMEVNGMVVRFPGMYYDL 400
>gi|51892618|ref|YP_075309.1| hypothetical protein STH1480 [Symbiobacterium thermophilum IAM
14863]
gi|51856307|dbj|BAD40465.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 386
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + P R+ + + P D+ +G+ P V L L++ +
Sbjct: 316 PSAEGPLHFTPRGLTELEQRVLGWMGSAPWWPGDLAESSGLPLPEVQACLTMLEIRSAVR 375
Query: 79 HHPEGKV 85
P+G+
Sbjct: 376 RLPDGQY 382
>gi|52842803|ref|YP_096602.1| DNA processing enzyme DprA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629914|gb|AAU28655.1| DNA processing enzyme DprA (SMF family) [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 361
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + ID II +G V L EL+L G + P G +
Sbjct: 309 LVKFIGFETTTIDQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIR 356
>gi|317486705|ref|ZP_07945522.1| DNA protecting protein DprA [Bilophila wadsworthia 3_1_6]
gi|316922088|gb|EFV43357.1| DNA protecting protein DprA [Bilophila wadsworthia 3_1_6]
Length = 429
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGI 59
P +S ++ P RI L P IDD+ G
Sbjct: 341 QPDSAPRPYSLDVPQEPFQSAPAAPPPLRQPDRSTLEGRILTLLAQSPRAIDDVCQSLGC 400
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ L++ G + P+ + +LT
Sbjct: 401 DPGEAGSTLIILEVRGLIRQRPDLRYALT 429
>gi|314965799|gb|EFT09898.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA2]
gi|315094483|gb|EFT66459.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL060PA1]
gi|327328977|gb|EGE70737.1| transcriptional regulator [Propionibacterium acnes HL103PA1]
Length = 280
Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 66
>gi|145300984|ref|YP_001143825.1| DNA processing chain A [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142853756|gb|ABO92077.1| DNA processing chain A [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 371
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ +++ +D + + + VV L+EL+LAG + G V
Sbjct: 314 YADLLDNVDYETTSVDTVAERSQLPVEVVLGRLVELELAGAVIAVAGGYVR 364
>gi|194335563|ref|YP_002017357.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1]
gi|194308040|gb|ACF42740.1| DNA protecting protein DprA [Pelodictyon phaeoclathratiforme BU-1]
Length = 383
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
I Q + PIHID + +GI+ + + L EL+L +
Sbjct: 325 LTPIEQAIMQCMEREPIHIDTLAVASGIDVSSLLVHLFELELKAAVVQQAG 375
>gi|310778327|ref|YP_003966660.1| DNA protecting protein DprA [Ilyobacter polytropus DSM 2926]
gi|309747650|gb|ADO82312.1| DNA protecting protein DprA [Ilyobacter polytropus DSM 2926]
Length = 357
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ L +++D++I TGI A + VL+EL+L G +C P GK +
Sbjct: 304 EKIVFNILKKE-MNLDELIMSTGIRAGELLAVLMELELKGLICGAPGGKYRRKV 356
>gi|302874646|ref|YP_003843279.1| DNA protecting protein DprA [Clostridium cellulovorans 743B]
gi|307690742|ref|ZP_07633188.1| DNA protecting protein DprA [Clostridium cellulovorans 743B]
gi|302577503|gb|ADL51515.1| DNA protecting protein DprA [Clostridium cellulovorans 743B]
Length = 344
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
RI ++L++ PIH+DD+I I+ +Y VL E+ + +
Sbjct: 283 SLSEVESRIFENLSDSPIHVDDLISMVNIDINQIYKVLFEMQAKNLIYTLSGNYYA 338
>gi|220907030|ref|YP_002482341.1| DNA protecting protein DprA [Cyanothece sp. PCC 7425]
gi|219863641|gb|ACL43980.1| DNA protecting protein DprA [Cyanothece sp. PCC 7425]
Length = 370
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q D + ++ ++ Q L+ + D I+ G++ L++L+
Sbjct: 296 PQLDQPPPRP-DLAPDLATVLASLTQLTQDLSQSSVPFDLIVQTCGLDPGTASSALMQLE 354
Query: 73 LAGRLCHHPEGKV 85
L G + P +
Sbjct: 355 LLGLINQLPGMRY 367
>gi|307611476|emb|CBX01147.1| hypothetical protein LPW_28461 [Legionella pneumophila 130b]
Length = 361
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + ID II +G V L EL+L G + P G +
Sbjct: 309 LVKFIGFETTTIDQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIR 356
>gi|28210944|ref|NP_781888.1| SMF protein, putative DNA processing chain A [Clostridium tetani
E88]
gi|28203383|gb|AAO35825.1| SMF protein, putative DNA processing chain A [Clostridium tetani
E88]
Length = 361
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I + + PIHIDDI+ T ++ +Y VL EL +
Sbjct: 305 ENEIYTVIEDTPIHIDDIVRVTKVDIKRLYEVLFELQFKNHITCLSGNYYVR 356
>gi|312130376|ref|YP_003997716.1| DNA protecting protein dpra [Leadbetterella byssophila DSM 17132]
gi|311906922|gb|ADQ17363.1| DNA protecting protein DprA [Leadbetterella byssophila DSM 17132]
Length = 359
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q + P++ + + + N I ID++ T I + LLEL+
Sbjct: 284 QLSEIMLWTQEVAPRPKWENESERSLIEIIANYREIGIDELSWRTEIPLNQLASHLLELE 343
Query: 73 LAGRLCHHPEGKVSLT 88
G + P K SL
Sbjct: 344 FKGVVKQLPGKKFSLA 359
>gi|299138372|ref|ZP_07031551.1| DNA protecting protein DprA [Acidobacterium sp. MP5ACTX8]
gi|298599618|gb|EFI55777.1| DNA protecting protein DprA [Acidobacterium sp. MP5ACTX8]
Length = 403
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 24 NITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHT--GIEAPVVYLVLLELDLAGRLCHH 80
+ + Q L + + +D++I + + V+ L EL+LAGR+
Sbjct: 335 PEAAAMPPMSEQERLVMQHLRQDEALQLDELIERLEPKMVSGEVFTALFELELAGRVKQM 394
Query: 81 PEGKVSLT 88
P +
Sbjct: 395 PGKNYVRS 402
>gi|314929122|gb|EFS92953.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL044PA1]
Length = 244
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 2 IINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 58
>gi|314970931|gb|EFT15029.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA3]
Length = 135
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 7 QKMIINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 66
>gi|126733565|ref|ZP_01749312.1| DNA processing protein DprA, putative [Roseobacter sp. CCS2]
gi|126716431|gb|EBA13295.1| DNA processing protein DprA, putative [Roseobacter sp. CCS2]
Length = 379
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E + + ++ I L + PI D ++ + A +
Sbjct: 304 ELDLSTPTPTAATRSLRDVA-------ALHSEILSRLGSAPIAEDQLLRDIKVAATEIAP 356
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
VL++L+L G++ G ++
Sbjct: 357 VLVDLELEGKITRQSGGLLAR 377
>gi|54298586|ref|YP_124955.1| hypothetical protein lpp2650 [Legionella pneumophila str. Paris]
gi|53752371|emb|CAH13803.1| hypothetical protein lpp2650 [Legionella pneumophila str. Paris]
Length = 361
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + ID II +G V L EL+L G + P G +
Sbjct: 309 LVKFIGFETTTIDQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIR 356
>gi|54295434|ref|YP_127849.1| hypothetical protein lpl2520 [Legionella pneumophila str. Lens]
gi|53755266|emb|CAH16760.1| hypothetical protein lpl2520 [Legionella pneumophila str. Lens]
Length = 361
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + ID II +G V L EL+L G + P G +
Sbjct: 309 LVKFIGFETTTIDQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIR 356
>gi|15895060|ref|NP_348409.1| DNA uptake protein [Clostridium acetobutylicum ATCC 824]
gi|15024755|gb|AAK79749.1|AE007687_6 DNA uptake protein [Clostridium acetobutylicum ATCC 824]
gi|325509198|gb|ADZ20834.1| DNA uptake protein [Clostridium acetobutylicum EA 2018]
Length = 354
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +I +++ PIH+DDI I+ +Y +L E+ L ++
Sbjct: 298 QRQIYDLVSDKPIHVDDIKRCLNIDIQELYELLFEMQLKNKILCLSGSYYVR 349
>gi|117621477|ref|YP_854788.1| DNA protecting protein DprA [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562884|gb|ABK39832.1| DNA protecting protein DprA [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 371
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ +++ +D + + + VV L+EL+LAG + G V
Sbjct: 314 YADLLDNVDYETTSVDTVAERSQLPVEVVLGRLVELELAGAVMAVAGGYVR 364
>gi|326791406|ref|YP_004309227.1| DNA protecting protein DprA [Clostridium lentocellum DSM 5427]
gi|326542170|gb|ADZ84029.1| DNA protecting protein DprA [Clostridium lentocellum DSM 5427]
Length = 362
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + ++ PI ++++++ T + +Y LL+L++ G + P +
Sbjct: 309 EERIVYAYVSQEPIFLNELVNSTQLSYKSIYKGLLQLEIKGLIKRLPGERYVR 361
>gi|114570266|ref|YP_756946.1| DNA protecting protein DprA [Maricaulis maris MCS10]
gi|114340728|gb|ABI66008.1| DNA protecting protein DprA [Maricaulis maris MCS10]
Length = 387
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 29/72 (40%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
D + + R++ L+ P+ D++ + V +L+E++++G
Sbjct: 312 DEEAGLSTDEGLSNTSALSPLERLRALLSPAPVSGDELARAADLPIGEVQAMLMEMEMSG 371
Query: 76 RLCHHPEGKVSL 87
+ P+G V
Sbjct: 372 EIATLPDGLVQR 383
>gi|332704254|ref|ZP_08424342.1| DNA protecting protein DprA [Desulfovibrio africanus str. Walvis
Bay]
gi|332554403|gb|EGJ51447.1| DNA protecting protein DprA [Desulfovibrio africanus str. Walvis
Bay]
Length = 427
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E + L HID + TG+ + + +LL L+L G + P S
Sbjct: 366 DDLAPEENAVLLVLAADVRTHIDVLGRTTGLASGTLSGILLALELKGLVRQWPGMYYSR 424
>gi|160884732|ref|ZP_02065735.1| hypothetical protein BACOVA_02721 [Bacteroides ovatus ATCC 8483]
gi|156109767|gb|EDO11512.1| hypothetical protein BACOVA_02721 [Bacteroides ovatus ATCC 8483]
Length = 374
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I L + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILGKLGNLQINSLVVEADIPVNKMTALLFELEMKGVIRVLAGGMYQL 372
>gi|189460247|ref|ZP_03009032.1| hypothetical protein BACCOP_00884 [Bacteroides coprocola DSM 17136]
gi|189433108|gb|EDV02093.1| hypothetical protein BACCOP_00884 [Bacteroides coprocola DSM 17136]
Length = 371
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L I I+ ++ + I + +L EL++ G + G L
Sbjct: 311 PELDENEEKIVSLLQKHPDGIQINTLVVESNIAINRMTGILFELEMKGIIRTLAGGVYKL 370
>gi|255261380|ref|ZP_05340722.1| DNA protecting protein DprA [Thalassiobium sp. R2A62]
gi|255103715|gb|EET46389.1| DNA protecting protein DprA [Thalassiobium sp. R2A62]
Length = 100
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 30/82 (36%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + + + T I L P+ + +I A +V
Sbjct: 18 ETIRPAPTPQLELPPQSEPRRLSETAALHSEILNRLGPSPLAENQLIRDLKSAAAIVTPA 77
Query: 68 LLELDLAGRLCHHPEGKVSLTM 89
L++L+L G++ G ++L++
Sbjct: 78 LIDLELEGKITRQSGGLIALSV 99
>gi|110597593|ref|ZP_01385878.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM
13031]
gi|110340713|gb|EAT59190.1| DNA processing protein DprA, putative [Chlorobium ferrooxidans DSM
13031]
Length = 375
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
I + + P+HID + TG++ ++ + L EL+L + P
Sbjct: 319 LNDHERTILERMTREPVHIDTLAAETGMDISLLLVHLFELELKSAIMQMP 368
>gi|103486697|ref|YP_616258.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
gi|98976774|gb|ABF52925.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
Length = 360
Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + E ER + L P+ +D+++ +G +A V LVLLEL+LAGR
Sbjct: 289 REPVRAFFVPPVTEPANDERQALVDLLGPTPVTVDELVRQSGQDAAAVQLVLLELELAGR 348
Query: 77 LCHHPEGKVSL 87
+ H K+SL
Sbjct: 349 IERHAGAKISL 359
>gi|298529949|ref|ZP_07017351.1| DNA protecting protein DprA [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509323|gb|EFI33227.1| DNA protecting protein DprA [Desulfonatronospira thiodismutans
ASO3-1]
Length = 381
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 8 QNFFSSQSDTNHTKNINITHY-PEYTQCERVRIK-QSLNNVPIHIDDIIHHTGIEAPVVY 65
+N ++D + + P E + + +N HIDD+ + +
Sbjct: 297 KNHLQQENDNEMSAPVPAEPALPGDLTSEEKAVAGELINRERTHIDDLSQCLDLSPSSIS 356
Query: 66 LVLLELDLAGRLCHHPEGKVS 86
+L+ L++ G + P
Sbjct: 357 RILVNLEIRGMVRREPGMYYK 377
>gi|88657722|ref|YP_507678.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599179|gb|ABD44648.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
Length = 375
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ I Q + + P I++II T + + + L+EL+ A ++ P KV+L
Sbjct: 319 NAKDTILQYITHSPTEIEEIIASTNLNISSILIALIELEAAQKIERFPNNKVAL 372
>gi|307543966|ref|YP_003896445.1| DNA processing protein [Halomonas elongata DSM 2581]
gi|307215990|emb|CBV41260.1| K04096 DNA processing protein [Halomonas elongata DSM 2581]
Length = 366
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ + L++ P +D ++ TG+ P LL L+L GR G V L
Sbjct: 302 PEAAPDADPVLAWLSDTPTPVDALVDLTGLAVPDCQRRLLALELEGRASQAAGGWVRLPT 361
Query: 90 HL 91
Sbjct: 362 SP 363
>gi|32476472|ref|NP_869466.1| DNA processing chain A [Rhodopirellula baltica SH 1]
gi|32447017|emb|CAD78923.1| DNA processing chain A [Rhodopirellula baltica SH 1]
Length = 455
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ ++ ID++ +G+ A V ++ L++ + VS
Sbjct: 403 ERQVLAAVGTSGTAIDEVTLSSGLPASRVNAIVSILEMKRFVRRLSGQYVSR 454
>gi|86141090|ref|ZP_01059649.1| Smf protein DNA processing chain A [Leeuwenhoekiella blandensis
MED217]
gi|85833032|gb|EAQ51481.1| Smf protein DNA processing chain A [Leeuwenhoekiella blandensis
MED217]
Length = 366
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 31 YTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E I L++ +D I H + V +LL ++L G + P + LT
Sbjct: 308 ELSSEEKLIWNYLSDAGKEQLDLIALHCKMPTFKVASILLNMELKGVVRPLPGKQFELT 366
>gi|253682393|ref|ZP_04863190.1| DNA protecting protein DprA [Clostridium botulinum D str. 1873]
gi|253562105|gb|EES91557.1| DNA protecting protein DprA [Clostridium botulinum D str. 1873]
Length = 359
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ + +N+VPIH D+++ T I+ +Y VL EL L +
Sbjct: 303 ETKVYKHINSVPIHFDEVLRLTNIDIKQLYEVLFELQLKDEIMCLSGNYYVRN 355
>gi|329962716|ref|ZP_08300639.1| DNA protecting protein DprA [Bacteroides fluxus YIT 12057]
gi|328529550|gb|EGF56453.1| DNA protecting protein DprA [Bacteroides fluxus YIT 12057]
Length = 371
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ E + L+ +HI+ ++ + + +L EL+
Sbjct: 296 PVSKAEKPEAVQRNLFPDLSEEEEGVVHILSCRGDLHINTLVVEANLPVNRMSALLFELE 355
Query: 73 LAGRLCHHPEGKVSL 87
+ G + G L
Sbjct: 356 MKGVVKALVGGVYHL 370
>gi|224023530|ref|ZP_03641896.1| hypothetical protein BACCOPRO_00232 [Bacteroides coprophilus DSM
18228]
gi|224016752|gb|EEF74764.1| hypothetical protein BACCOPRO_00232 [Bacteroides coprophilus DSM
18228]
Length = 371
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 30 EYTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E I L N + ++ +I + I + ++LEL+L G + G L
Sbjct: 311 PDLNEEESLICSLLEKNPDGMQLNSLIVASNIPVNRLAGIMLELELKGVVRAAAGGMYRL 370
>gi|327539302|gb|EGF25923.1| DNA recombination-mediator protein A [Rhodopirellula baltica WH47]
Length = 424
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ ++ ID++ +G+ A V ++ L++ + VS
Sbjct: 372 ERQVLAAVGTSGTAIDEVTLSSGLPASRVNAIVSILEMKRFVRRLSGQYVSR 423
>gi|269836418|ref|YP_003318646.1| DNA protecting protein DprA [Sphaerobacter thermophilus DSM 20745]
gi|269785681|gb|ACZ37824.1| DNA protecting protein DprA [Sphaerobacter thermophilus DSM 20745]
Length = 359
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
T E + L+ P HID+I +G+ + +LLE+ L G +
Sbjct: 302 PTTSEEADVLHYLDGEPRHIDEIALESGLAISRLSALLLEMQLKGLVR 349
>gi|319900680|ref|YP_004160408.1| DNA protecting protein DprA [Bacteroides helcogenes P 36-108]
gi|319415711|gb|ADV42822.1| DNA protecting protein DprA [Bacteroides helcogenes P 36-108]
Length = 374
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 34/75 (45%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S +++ + I T +PE T+ E ++ + +H++ ++ + + +L EL+
Sbjct: 296 SPRESSGVEGIQRTFFPELTEDEERVVRILMRQGDLHVNALVVEANVPVNRMSALLFELE 355
Query: 73 LAGRLCHHPEGKVSL 87
+ G + G L
Sbjct: 356 MKGVIKAMVGGVYHL 370
>gi|225621489|ref|YP_002722748.1| putative DNA protecting protein DprA [Brachyspira hyodysenteriae
WA1]
gi|225216310|gb|ACN85044.1| putative DNA protecting protein DprA [Brachyspira hyodysenteriae
WA1]
Length = 416
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
N Q + + + N IHID++I + ++ V +L++L++ G +
Sbjct: 347 SKQNDESIISALQEDEALLYNIIKQNDKIHIDEVIEESKMKVQAVTSMLMQLEIKGIIKQ 406
Query: 80 HPEGKVSL 87
++
Sbjct: 407 LSGKYYTI 414
>gi|88855250|ref|ZP_01129915.1| DNA processing factor [marine actinobacterium PHSC20C1]
gi|88815778|gb|EAR25635.1| DNA processing factor [marine actinobacterium PHSC20C1]
Length = 434
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLV 67
++ + E R+ +L+ DDI +G+ V
Sbjct: 349 PESQPPTNLPPESSAPKVDADSPPSTETTRLLDALSVRSARTADDIASRSGLALATVRAH 408
Query: 68 LLELDLAGRL 77
L L+L GR+
Sbjct: 409 LGLLELDGRV 418
>gi|255693546|ref|ZP_05417221.1| putative DNA processing protein DprA [Bacteroides finegoldii DSM
17565]
gi|260620611|gb|EEX43482.1| putative DNA processing protein DprA [Bacteroides finegoldii DSM
17565]
Length = 374
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 31 YTQCERVRI---KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I + L N + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILEKLGN--LQINSLVVEADIPVNKMTAILFELEMKGVIRVLAGGMYQL 372
>gi|331007628|ref|ZP_08330770.1| Rossmann fold nucleotide-binding protein [gamma proteobacterium
IMCC1989]
gi|330418568|gb|EGG93092.1| Rossmann fold nucleotide-binding protein [gamma proteobacterium
IMCC1989]
Length = 391
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ + + L P ID +I T + + LL L++ G + H
Sbjct: 327 AQTEKKRPELEPKDKVLLAHLGFAPTSIDQLIETTQLSHADISDALLTLEINGWIKHSAW 386
Query: 83 GK 84
G
Sbjct: 387 GY 388
>gi|281422352|ref|ZP_06253351.1| putative DNA processing protein DprA [Prevotella copri DSM 18205]
gi|281403583|gb|EFB34263.1| putative DNA processing protein DprA [Prevotella copri DSM 18205]
Length = 392
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ I + +PE E I L+ + I+ I + I+ + +L ++++ G
Sbjct: 320 RAKQQGIERSLFPE-LSTEEELIVSILSKTNDLQINIISVKSNIDISRLTSLLFQMEMKG 378
Query: 76 RLCHHPEGKVSL 87
+ G L
Sbjct: 379 IIRTLAGGMYHL 390
>gi|119896389|ref|YP_931602.1| putative DNA processing protein DrpA [Azoarcus sp. BH72]
gi|119668802|emb|CAL92715.1| putative DNA processing protein DrpA [Azoarcus sp. BH72]
Length = 372
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + + P+ I+ ++ +G+ +Y +LL ++L GR+ +
Sbjct: 323 VLALIGHEPVDIELLVQRSGLTVDALYAILLPMELDGRIGRCAGSRFQR 371
>gi|326799926|ref|YP_004317745.1| DNA protecting protein DprA [Sphingobacterium sp. 21]
gi|326550690|gb|ADZ79075.1| DNA protecting protein DprA [Sphingobacterium sp. 21]
Length = 364
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + + + I ID + + T + + ++LLEL++ G L P
Sbjct: 307 LNPEEKHVFDIVKESGSIGIDALAYKTNLTQSKLAILLLELEMKGVLIALPGKMYR 362
>gi|313159668|gb|EFR59025.1| DNA protecting protein DprA [Alistipes sp. HGB5]
Length = 367
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + + + P+ + + +G++ + +L+ L+LAG
Sbjct: 295 AEPATLRPKPATPQLTPDETGLLGCFRTDDPLSHETLSELSGLDPGELATLLVGLELAGA 354
Query: 77 LCHHPEGKV 85
+ P +
Sbjct: 355 VRQLPGNRY 363
>gi|302392405|ref|YP_003828225.1| DNA protecting protein DprA [Acetohalobium arabaticum DSM 5501]
gi|302204482|gb|ADL13160.1| DNA protecting protein DprA [Acetohalobium arabaticum DSM 5501]
Length = 367
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 23/57 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++ + +VP D I+ A + +LL+L++ G + + +
Sbjct: 310 LSLQEAKVYDKIESVPQEFDKILATVDFSASQLNSILLKLEIKGLITQLAGNRFKRS 366
>gi|167763918|ref|ZP_02436045.1| hypothetical protein BACSTE_02300 [Bacteroides stercoris ATCC
43183]
gi|167698034|gb|EDS14613.1| hypothetical protein BACSTE_02300 [Bacteroides stercoris ATCC
43183]
Length = 372
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + + L + +HI+ ++ I + +L EL++ G + G L
Sbjct: 312 PELTDEEELVVRILTHQGDLHINALVVEADIPVNRMSALLFELEMKGVVKALVGGVYCL 370
>gi|319407290|emb|CBI80931.1| DNA processing chain A [Bartonella sp. 1-1C]
Length = 383
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ +T+ K I ER + +L++ PI +D + ++G+ +YL+L+ELD
Sbjct: 307 PRENTSPPKQITNETSLIGDDIEREAVLAALSSTPIDLDTLSIYSGVSLQKLYLLLIELD 366
Query: 73 LAGRLCHHPEGKVSLTM 89
LAG+L H G VSL+
Sbjct: 367 LAGKLIRHSGGYVSLST 383
>gi|313835145|gb|EFS72859.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA2]
Length = 127
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
I SL P +D ++ TG + L EL+ G+L G V++ + +P P
Sbjct: 2 IINSLGASPTSVDALVELTGASPATIRRDLTELEGHGQLRKVHGGAVTVNLRGMPMP 58
>gi|117926935|ref|YP_867552.1| DNA protecting protein DprA [Magnetococcus sp. MC-1]
gi|117610691|gb|ABK46146.1| DNA protecting protein DprA [Magnetococcus sp. MC-1]
Length = 365
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 23/57 (40%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L + + +D ++ + + LL+L+L G + G ++L
Sbjct: 304 PDIPGAASVVAALGDGALTVDGLLRLCHLTPAELSSTLLQLELCGIITREMGGTLAL 360
>gi|284099271|ref|ZP_06385988.1| SMF protein [Candidatus Poribacteria sp. WGA-A3]
gi|283830401|gb|EFC34611.1| SMF protein [Candidatus Poribacteria sp. WGA-A3]
Length = 375
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ R+ +++ P+ ID+++ + V +LL L+L G + P
Sbjct: 308 QETAVPVFTAKEQRVLALVHDEPVSIDEVLTQAPFDRAEVMSLLLSLELRGCIQQVPGSC 367
Query: 85 VSLT 88
+
Sbjct: 368 YIRS 371
>gi|319404285|emb|CBI77878.1| DNA processing chain A [Bartonella rochalimae ATCC BAA-1498]
Length = 383
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q +T+ K I ER + +L++ PI +D + ++G+ +YL+L+ELD
Sbjct: 307 PQENTSPPKQITNETSLIGDDIEREAVLSALSSTPIDLDTLSIYSGVSLQKLYLLLIELD 366
Query: 73 LAGRLCHHPEGKVSLTM 89
LAG+L H G VSL+
Sbjct: 367 LAGKLIRHSGGYVSLST 383
>gi|134299832|ref|YP_001113328.1| DNA protecting protein DprA [Desulfotomaculum reducens MI-1]
gi|134052532|gb|ABO50503.1| DNA protecting protein DprA [Desulfotomaculum reducens MI-1]
Length = 364
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ L+ +P ++ +I+ + + V L L++ G + P
Sbjct: 306 LEVNEKKVLAVLSEIPQTMEQVINLSKLLPEEVAAALTILEIEGLIRSLPGKMY 359
>gi|226942189|ref|YP_002797262.1| DNA processing protein DprA [Azotobacter vinelandii DJ]
gi|226717116|gb|ACO76287.1| DNA processing protein, DprA (SMF family) [Azotobacter vinelandii
DJ]
Length = 366
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ N P R + L+ P +++ +G V L EL+L
Sbjct: 292 RGWQNLAPPPRSQAGPAPLDA-RHPLLALLHAAPQTSEELALASGWPLARVLAALTELEL 350
Query: 74 AGRLCHHPE 82
G++
Sbjct: 351 DGKVAREGG 359
>gi|317057707|ref|YP_004106174.1| SMF family protein [Ruminococcus albus 7]
gi|315449976|gb|ADU23540.1| SMF family protein [Ruminococcus albus 7]
Length = 380
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 15 SDTNHTKNINITHYPE-YTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ +K P I L N + +D+I +G+ V + L+
Sbjct: 304 NAQAVSKQEKAPKKPARELNSTESTIYDLLKENGAMSLDEITARSGLSVMEVLTCMTGLE 363
Query: 73 LAGRLCHHPEGKVSL 87
LAG P + L
Sbjct: 364 LAGIAVSLPGKRYEL 378
>gi|330994161|ref|ZP_08318089.1| Protein smf [Gluconacetobacter sp. SXCC-1]
gi|329758628|gb|EGG75144.1| Protein smf [Gluconacetobacter sp. SXCC-1]
Length = 390
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCE---RVRIKQSLNNVPIHIDDIIHHTGIE 60
P + + + Q E I+ L+ P +DD++
Sbjct: 299 PVRNPAVPQRERAGTVLRAVPAPGPCPPAQGEGDLHEMIEGFLSFTPSPVDDLVRRCQFS 358
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
V L E+++AG + V P P
Sbjct: 359 TAAVLTALSEMEIAGTVEFLAGDMVVRR---PPP 389
>gi|323524422|ref|YP_004226575.1| DNA protecting protein DprA [Burkholderia sp. CCGE1001]
gi|323381424|gb|ADX53515.1| DNA protecting protein DprA [Burkholderia sp. CCGE1001]
Length = 448
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+H P + + R+ +L + P ++ + T ++ ++ LL+L+LAG + P G+
Sbjct: 383 SHAPAPSDPDAQRLLAALGHAPTSLEILATRTEMDYAILQTTLLQLELAGHVSALPGGRY 442
Query: 86 SLTMH 90
+ H
Sbjct: 443 TRASH 447
>gi|329956498|ref|ZP_08297095.1| DNA protecting protein DprA [Bacteroides clarus YIT 12056]
gi|328524395|gb|EGF51465.1| DNA protecting protein DprA [Bacteroides clarus YIT 12056]
Length = 372
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 20 TKNINITHYPEYTQCE--RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ I +PE T E VRI + +HI+ ++ I + +L EL++ G +
Sbjct: 303 AEGIQRNLFPELTDEEGMIVRILARQGD--LHINALVVEADIPVNRMSALLFELEMKGVV 360
Query: 78 CHHPEGKVSL 87
G L
Sbjct: 361 KTLVGGMYHL 370
>gi|29348479|ref|NP_811982.1| Smf protein DNA processing chain A [Bacteroides thetaiotaomicron
VPI-5482]
gi|29340383|gb|AAO78176.1| Smf protein DNA processing chain A [Bacteroides thetaiotaomicron
VPI-5482]
Length = 358
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPV 63
+E ++ S +N+ + + E E +I +L + I+ ++ T I
Sbjct: 275 LVEAMGWTLDSHPAKVENVQRSLFLE-LTEEEQKIVHTLEKQGNLQINTLVVETDIPVHK 333
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +L EL++ G + G L
Sbjct: 334 MSAILFELEMKGAVRVLAGGVYQL 357
>gi|270157751|ref|ZP_06186408.1| DNA protecting protein DprA [Legionella longbeachae D-4968]
gi|289163980|ref|YP_003454118.1| Protein smf [Legionella longbeachae NSW150]
gi|269989776|gb|EEZ96030.1| DNA protecting protein DprA [Legionella longbeachae D-4968]
gi|288857153|emb|CBJ10969.1| Protein smf [Legionella longbeachae NSW150]
Length = 357
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + +D II +G V L EL+L+G + P G +
Sbjct: 301 PLASGNKNLVKFIGFEMTTVDQIILRSGCTVEQVTRELAELELSGVVVSVPGGYMR 356
>gi|260061224|ref|YP_003194304.1| DNA processing protein DprA [Robiginitalea biformata HTCC2501]
gi|88785356|gb|EAR16525.1| DNA processing protein DprA, putative [Robiginitalea biformata
HTCC2501]
Length = 412
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
N + P + + L +H+D++ + L L++ G +
Sbjct: 341 PNPNRAVNPVPGDLDPTENTLARCLAESGCMHLDEVAVRCQLGVSEAVSGLFNLEMRGLV 400
Query: 78 CHHPEGKVS 86
P
Sbjct: 401 RSLPGKLFR 409
>gi|218131616|ref|ZP_03460420.1| hypothetical protein BACEGG_03236 [Bacteroides eggerthii DSM 20697]
gi|217985919|gb|EEC52258.1| hypothetical protein BACEGG_03236 [Bacteroides eggerthii DSM 20697]
Length = 372
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 32/77 (41%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
++ + I + +PE T+ E ++ + +HI+ ++ I + +L E
Sbjct: 294 WTDTEPPVKAEGIQRSLFPELTEEEEAVVRILVRQGDLHINTLVVEADIPVNRMSALLFE 353
Query: 71 LDLAGRLCHHPEGKVSL 87
L++ G + G L
Sbjct: 354 LEMKGVVKTLVGGVYHL 370
>gi|317474750|ref|ZP_07934024.1| DNA recombination-mediator protein A [Bacteroides eggerthii
1_2_48FAA]
gi|316909431|gb|EFV31111.1| DNA recombination-mediator protein A [Bacteroides eggerthii
1_2_48FAA]
Length = 372
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ I + +PE T+ E ++ + +HI+ ++ I + +L EL++ G +
Sbjct: 303 AEGIQRSLFPELTEEEEAVVRILVRQGDLHINTLVVEADIPVNRMSALLFELEMKGVVKT 362
Query: 80 HPEGKVSL 87
G L
Sbjct: 363 LVGGVYHL 370
>gi|110832994|ref|YP_691853.1| peptide deformylase, DNA processing protein [Alcanivorax
borkumensis SK2]
gi|110646105|emb|CAL15581.1| peptide deformylase, DNA processing protein [Alcanivorax
borkumensis SK2]
Length = 353
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + L + +D + TG+ + L +L+L G + G +
Sbjct: 296 EAPALLTQLTSGVNSLDALQERTGLPVAALAGQLADLELEGWVERVAGGYLKR 348
>gi|299144970|ref|ZP_07038038.1| putative DNA processing protein DprA [Bacteroides sp. 3_1_23]
gi|298515461|gb|EFI39342.1| putative DNA processing protein DprA [Bacteroides sp. 3_1_23]
Length = 374
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 31 YTQCERVRI---KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I + L N + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILEKLGN--LQINSLVVEADIPVNKMTALLFELEMKGVIRVLAGGMYQL 372
>gi|298385823|ref|ZP_06995380.1| DNA processing protein DprA [Bacteroides sp. 1_1_14]
gi|298261051|gb|EFI03918.1| DNA processing protein DprA [Bacteroides sp. 1_1_14]
Length = 373
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPV 63
+E ++ S +N+ + + E E ++ +L + I+ ++ T I
Sbjct: 290 LVEAMGWTLDSHPAKVENVQRSLFLE-LTEEEQKVVHTLEKQGNLQINTLVVETDIPVHK 348
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +L EL++ G + G L
Sbjct: 349 MSAILFELEMKGAVRVLAGGVYQL 372
>gi|323701838|ref|ZP_08113508.1| DNA protecting protein DprA [Desulfotomaculum nigrificans DSM 574]
gi|323533142|gb|EGB23011.1| DNA protecting protein DprA [Desulfotomaculum nigrificans DSM 574]
Length = 363
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 5/50 (10%), Positives = 19/50 (38%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + L+ P+ ++ ++ + + + L++ G + P
Sbjct: 309 ERDLWEVLSYQPMSLEQLVEASKLSPQDTAAAITMLEIKGLVRLLPGKVY 358
>gi|148556726|ref|YP_001264308.1| DNA protecting protein DprA [Sphingomonas wittichii RW1]
gi|148501916|gb|ABQ70170.1| DNA protecting protein DprA [Sphingomonas wittichii RW1]
Length = 592
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYP-EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
E + N P E + R + L VP+ +D++I +G+ A +
Sbjct: 506 IAEALSPIAGVAARPADNFASAPAPAEADEPARAALTGLLGPVPLAVDELIRQSGVSAAM 565
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
V +VLLEL+L GRL H G+VSL
Sbjct: 566 VQMVLLELELGGRLDRHAGGRVSL 589
>gi|240850661|ref|YP_002972061.1| DNA processing chain A [Bartonella grahamii as4aup]
gi|240267784|gb|ACS51372.1| DNA processing chain A [Bartonella grahamii as4aup]
Length = 404
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 4 PQIEQNFFSSQSDT-------NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
P + NFF S N N + R + +L+ PI +D + H
Sbjct: 302 PNSQLNFFEEPSSLQLKKENFNLADEKNSSLSLAGDDAARAAVLSALSTTPIDLDTLSIH 361
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
+G+ P +YL+L+ELDLAG+L H G VSL+ +L PQ
Sbjct: 362 SGVSLPALYLLLVELDLAGKLIRHSGGCVSLS-NLDLPQ 399
>gi|253569154|ref|ZP_04846564.1| smf protein DNA processing chain A [Bacteroides sp. 1_1_6]
gi|251841173|gb|EES69254.1| smf protein DNA processing chain A [Bacteroides sp. 1_1_6]
Length = 373
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPV 63
+E ++ S +N+ + + E E ++ +L + I+ ++ T I
Sbjct: 290 LVEAMGWTLDSHPAKVENVQRSLFLE-LTEEEQKVVHTLEKQGNLQINTLVVETDIPVHK 348
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +L EL++ G + G L
Sbjct: 349 MSAILFELEMKGAVRVLAGGVYQL 372
>gi|254497988|ref|ZP_05110751.1| DNA processing enzyme DprA [Legionella drancourtii LLAP12]
gi|254352765|gb|EET11537.1| DNA processing enzyme DprA [Legionella drancourtii LLAP12]
Length = 357
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + + + ID II +G V L EL+L G + P G +
Sbjct: 304 SENENLVKFIGFEMTTIDQIILRSGSTVEQVTRELAELELKGAVLSVPGGYMR 356
>gi|282900736|ref|ZP_06308678.1| SMF protein [Cylindrospermopsis raciborskii CS-505]
gi|281194536|gb|EFA69491.1| SMF protein [Cylindrospermopsis raciborskii CS-505]
Length = 375
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ E ++ L + D I+ + + +V LL+L+L G + P +
Sbjct: 318 LEPELQQVMSILTVDALPFDLIVEKAKMGSGLVSGYLLQLELMGLVSQLPGMRY 371
>gi|330720128|gb|EGG98532.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [gamma proteobacterium IMCC2047]
Length = 383
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ + + P+ +D ++ T + + VL +L L G++ H G V +
Sbjct: 320 PEGAVYQQVLEKMGFDPVPMDALVERTELMVTELSAVLTQLTLQGKVEHTERGFVRV 376
>gi|329851389|ref|ZP_08266146.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
gi|328840235|gb|EGF89807.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
Length = 372
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 24/75 (32%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S R+++ P+ D++I G V L EL
Sbjct: 297 PSPRWPVPPLIFPTDGQDGDIAKAARRLRELAGATPVSRDELIRLAGAPVHVALSALCEL 356
Query: 72 DLAGRLCHHPEGKVS 86
++AG + G V+
Sbjct: 357 EIAGLITEVEGGYVA 371
>gi|237721926|ref|ZP_04552407.1| smf protein DNA processing chain A [Bacteroides sp. 2_2_4]
gi|229448795|gb|EEO54586.1| smf protein DNA processing chain A [Bacteroides sp. 2_2_4]
Length = 374
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 31 YTQCERVRI---KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I + L N + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILEKLGN--LQINSLVVEADIPVNKMTALLFELEMKGVIRVLAGGMYQL 372
>gi|298482604|ref|ZP_07000789.1| DNA processing protein DprA [Bacteroides sp. D22]
gi|298271311|gb|EFI12887.1| DNA processing protein DprA [Bacteroides sp. D22]
Length = 374
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 31 YTQCERVRI---KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I + L N + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILEKLGN--LQINSLVVEADIPVNKMTALLFELEMKGVIRVLAGGMYQL 372
>gi|261378982|ref|ZP_05983555.1| putative DNA processing protein DprA [Neisseria cinerea ATCC 14685]
gi|269144597|gb|EEZ71015.1| putative DNA processing protein DprA [Neisseria cinerea ATCC 14685]
Length = 397
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + SD + + + I + P+H D + G+ A
Sbjct: 311 PEKRITAVQTASDPPFSSEGKMPSEKTENRPVGGSILDRMGFDPVHPDVLAEQLGMPAAD 370
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+Y LLEL+L G + P G+
Sbjct: 371 LYAELLELELDGSIAAMPGGRYQR 394
>gi|302389647|ref|YP_003825468.1| DNA protecting protein DprA [Thermosediminibacter oceani DSM 16646]
gi|302200275|gb|ADL07845.1| DNA protecting protein DprA [Thermosediminibacter oceani DSM 16646]
Length = 359
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + + ++ P +++ ++ TG + ++ L L + P G V
Sbjct: 306 EEMEVLNLIDYHPTNVEVVVQKTGKAPQEINAIITRLQLKDLIASLPGGYVMR 358
>gi|198274063|ref|ZP_03206595.1| hypothetical protein BACPLE_00200 [Bacteroides plebeius DSM
17135]
gi|198273141|gb|EDY97410.1| hypothetical protein BACPLE_00200 [Bacteroides plebeius DSM
17135]
Length = 79
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E ++ L I I+ ++ + I + +L L++ G + G L
Sbjct: 19 PELTPEEEQVITHLQKHPDGIQINTLVVESNIAINRMTSLLFNLEMKGVVRALAGGVYKL 78
Query: 88 T 88
Sbjct: 79 A 79
>gi|153807025|ref|ZP_01959693.1| hypothetical protein BACCAC_01302 [Bacteroides caccae ATCC 43185]
gi|149130145|gb|EDM21355.1| hypothetical protein BACCAC_01302 [Bacteroides caccae ATCC 43185]
Length = 374
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++ L + I+ ++ I + +L EL++ G + G L
Sbjct: 316 LSEDEQKVVDILEKQGDLQINTLVVEADIPVQKMNAILFELEMKGVIRVLVGGMYQL 372
>gi|312887672|ref|ZP_07747263.1| DNA protecting protein DprA [Mucilaginibacter paludis DSM 18603]
gi|311299851|gb|EFQ76929.1| DNA protecting protein DprA [Mucilaginibacter paludis DSM 18603]
Length = 366
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
K P I +++ N + IDD+ T + + + LL L++ G
Sbjct: 295 EVKPQAQLMLPIDLSPNESLIFETIRQNAGQLGIDDLAIKTNLPLSQLAMNLLNLEMQGF 354
Query: 77 LCHHPEGKVSLT 88
+ P +
Sbjct: 355 VNSLPGKTYRVN 366
>gi|171913964|ref|ZP_02929434.1| putative protein required for chromosomal DNA transformation
[Verrucomicrobium spinosum DSM 4136]
Length = 367
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 7/82 (8%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTG-IEAPVVYLV 67
+ + + + + +++ + HI++I + +V
Sbjct: 286 DLMTLFPTEPQAPKMESVQPGVTLAPDEATVFEAIGSGEAHINEIAERCSPLSGSLVSAT 345
Query: 68 LLELDLAGRLCHHPEGKVSLTM 89
L++L++ + P +
Sbjct: 346 LMKLEIKRVVKPLPGKFYVRLV 367
>gi|121533773|ref|ZP_01665600.1| DNA protecting protein DprA [Thermosinus carboxydivorans Nor1]
gi|121307764|gb|EAX48679.1| DNA protecting protein DprA [Thermosinus carboxydivorans Nor1]
Length = 282
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 YPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + SL+ P+ +D+I+ T + A V LL+L+L G +
Sbjct: 215 AAPELLPDEAAVYGSLDYEHPLSVDEIVIKTNLSASKVTYALLQLELRGLI 265
>gi|119475270|ref|ZP_01615623.1| SMF protein [marine gamma proteobacterium HTCC2143]
gi|119451473|gb|EAW32706.1| SMF protein [marine gamma proteobacterium HTCC2143]
Length = 368
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + P+ ID + T + ++ L+L G L
Sbjct: 316 ERLLLDIIGYDPVSIDSLQQRTDWPMHDLVALVTALELRGLLDCVAGSY 364
>gi|293373773|ref|ZP_06620119.1| DNA protecting protein DprA [Bacteroides ovatus SD CMC 3f]
gi|292631263|gb|EFF49895.1| DNA protecting protein DprA [Bacteroides ovatus SD CMC 3f]
Length = 374
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 31 YTQCERVRI---KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I + L N + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILEKLGN--LQINSLVVEADIPVNKMTALLFELEMKGVIRVLAGGMYQL 372
>gi|296120323|ref|YP_003628101.1| DNA protecting protein DprA [Planctomyces limnophilus DSM 3776]
gi|296012663|gb|ADG65902.1| DNA protecting protein DprA [Planctomyces limnophilus DSM 3776]
Length = 368
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 21/75 (28%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S + + ++ Q + +D ++ G+E L L+
Sbjct: 292 SAPVQKPGGQVVQQPRELLLNDQEQKLLQLVGIEATPVDTVLTQCGLEYSRALSTLTVLE 351
Query: 73 LAGRLCHHPEGKVSL 87
+ + P V
Sbjct: 352 IKKLVRRLPGNFVVR 366
>gi|295085711|emb|CBK67234.1| DNA protecting protein DprA [Bacteroides xylanisolvens XB1A]
Length = 374
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 31 YTQCERVRI---KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E +I + L N + I+ ++ I + +L EL++ G + G L
Sbjct: 315 ELSEEEQKIVAILEKLGN--LQINSLVVEADIPVNKMTALLFELEMKGVIRVLAGGMYQL 372
>gi|291544309|emb|CBL17418.1| DNA protecting protein DprA [Ruminococcus sp. 18P13]
Length = 408
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGI 59
+V P+ + S + I L +H D + +
Sbjct: 322 VVKPKKQPEQ--SAEPEQPETTAKPKGDRSSLDLLQTAIVNCLEQEGKMHADVLATRLEL 379
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + L EL+L G + L
Sbjct: 380 SMEDLMMSLTELELMGVVTSLFGKVYELN 408
>gi|170742467|ref|YP_001771122.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
gi|168196741|gb|ACA18688.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
Length = 391
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E +FF+ + + + +R R+ L P+ +D + G+ A V
Sbjct: 310 ETDFFAQDPEPAAPEGLYEEAEEPPPPDDRARLLALLGPSPVAVDALGRQAGLSARSVQG 369
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LLEL+L G + H G VSL
Sbjct: 370 LLLELELDGLVTRHGGGSVSL 390
>gi|91216156|ref|ZP_01253124.1| Smf protein DNA processing chain A [Psychroflexus torquis ATCC
700755]
gi|91185673|gb|EAS72048.1| Smf protein DNA processing chain A [Psychroflexus torquis ATCC
700755]
Length = 366
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + Q L ID + G+ + +LL L+L G + P + +
Sbjct: 309 LNDDEKFVLQKLTETGKAEIDALSLICGLPTHKLSSILLNLELGGFVRPLPGKQFEI 365
>gi|296315164|ref|ZP_06865105.1| putative DNA processing protein DprA [Neisseria polysaccharea ATCC
43768]
gi|296837973|gb|EFH21911.1| putative DNA processing protein DprA [Neisseria polysaccharea ATCC
43768]
Length = 397
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 31/84 (36%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + SD + + + I + P+H D + G+ A
Sbjct: 311 PEKRITAVQTASDPPFSSEGKMPSEKTENRPVGGGILDRMGFDPVHPDVLAEQLGMPAAD 370
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+Y LLEL+L G + P G+
Sbjct: 371 LYAELLELELDGSVAAMPGGRYQR 394
>gi|325859769|ref|ZP_08172899.1| DNA protecting protein DprA [Prevotella denticola CRIS 18C-A]
gi|325482695|gb|EGC85698.1| DNA protecting protein DprA [Prevotella denticola CRIS 18C-A]
Length = 372
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ + H + I T +P+ E + + L N + I+ + G+ + +L L
Sbjct: 296 ARLEQAHQRGIERTLFPD-LSPEENSVVRVLAKNNDLQINLLSIQAGLPVSRLTGILFAL 354
Query: 72 DLAGRLCHHPEGKVSL 87
++ G + G L
Sbjct: 355 EMKGIIRAMAGGCYHL 370
>gi|228471774|ref|ZP_04056547.1| DNA processing chain A [Capnocytophaga gingivalis ATCC 33624]
gi|228276927|gb|EEK15622.1| DNA processing chain A [Capnocytophaga gingivalis ATCC 33624]
Length = 371
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 20 TKNINITHYPE---YTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
K PE E ++ L N +DD+ + + +L ++++ G
Sbjct: 296 EKKNPKVITPELFVELTPEEEKVATYLRENGKQTLDDLARECSLPVYKLSNLLFQMEMKG 355
Query: 76 RLCHHPEGKVSLT 88
+ P +
Sbjct: 356 VVRPLPGKMFVMA 368
>gi|171057039|ref|YP_001789388.1| DNA protecting protein DprA [Leptothrix cholodnii SP-6]
gi|170774484|gb|ACB32623.1| DNA protecting protein DprA [Leptothrix cholodnii SP-6]
Length = 379
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 26/86 (30%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+H + S+ I +L +D + TG
Sbjct: 290 LHLAVPAAAVSTGPAHAEPAAEQPDDANPPPDDVDDPILLALGWSAATLDVLQARTGWAT 349
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + LL+L+L+G++ P
Sbjct: 350 AELNVHLLDLELSGQVVRLPGQLFQR 375
>gi|222099410|ref|YP_002533978.1| DNA protecting protein DprA [Thermotoga neapolitana DSM 4359]
gi|221571800|gb|ACM22612.1| DNA protecting protein DprA [Thermotoga neapolitana DSM 4359]
Length = 337
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + + L P +DD++ + V V+ EL+L G + G
Sbjct: 280 SLEPAQRTVYEYLKVSPKSVDDLVEELEWDVSEVLRVISELELMGLVEFT-GGIYR 334
>gi|327312940|ref|YP_004328377.1| DNA protecting protein DprA [Prevotella denticola F0289]
gi|326944194|gb|AEA20079.1| DNA protecting protein DprA [Prevotella denticola F0289]
Length = 372
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ + H + I T +P+ E + + L N + I+ + G+ + +L L
Sbjct: 296 ARLEQAHQRGIERTLFPD-LSPEENSVVRVLAKNNDLQINLLSIQAGLPVSRLTGILFAL 354
Query: 72 DLAGRLCHHPEGKVSL 87
++ G + G L
Sbjct: 355 EMKGIIRAMAGGCYHL 370
>gi|325294278|ref|YP_004280792.1| DNA protecting protein DprA [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064726|gb|ADY72733.1| DNA protecting protein DprA [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 337
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
I + L+ P+ ID I ++ P + +LLE+++ G +
Sbjct: 289 IYELLSRSPLSIDQIADKLDMDIPTLTTLLLEMEILGLVRKEGG 332
>gi|167561028|ref|ZP_02353944.1| DNA protecting protein DprA [Burkholderia oklahomensis EO147]
Length = 395
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 36/90 (40%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E + ++ + R+ ++ + P+ ++ + T + + +
Sbjct: 292 LDEFSLDRARPAAASRNAPADASTDAGLDADARRLLDAIGHGPVPLELLAQRTSLASDAL 351
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +LL+L+LAGR+ P G+ + P
Sbjct: 352 HRLLLQLELAGRITALPGGRYTRIDGAQGP 381
>gi|256819503|ref|YP_003140782.1| DNA protecting protein DprA [Capnocytophaga ochracea DSM 7271]
gi|256581086|gb|ACU92221.1| DNA protecting protein DprA [Capnocytophaga ochracea DSM 7271]
Length = 364
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 8/82 (9%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPV 63
++ E I L N +D++ +
Sbjct: 280 TSAKDLIYQLGWDTPAPKAVQQELFVTLSPEEETISAFLKANGKQSLDELALGCQMPIYQ 339
Query: 64 VYLVLLELDLAGRLCHHPEGKV 85
+ +L ++++ G + P +
Sbjct: 340 LSNLLFQMEIKGVIKPLPGKRF 361
>gi|78484539|ref|YP_390464.1| DNA processing protein DprA, putative [Thiomicrospira crunogena
XCL-2]
gi|78362825|gb|ABB40790.1| DNA protecting protein DprA [Thiomicrospira crunogena XCL-2]
Length = 377
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q N + + + + + + PI +D+++ + + + L+ L+L
Sbjct: 302 QLSLNEPSKGQGSSPTKKDKEAPGDLLRYIEFEPIGLDELVVLSKLPVSDIQSQLMMLEL 361
Query: 74 AGRLCHHPEGKVSL 87
GR+ G+
Sbjct: 362 EGRIEALSAGRWRR 375
>gi|167568289|ref|ZP_02361163.1| DNA protecting protein DprA [Burkholderia oklahomensis C6786]
Length = 395
Score = 50.2 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 35/90 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E ++ + R+ ++ + P+ ++ + T + + +
Sbjct: 292 LDEFGLDRARPAAASRNAPADASTDAGLDADARRLLDAIGHGPVPLELLAQRTSLASDAL 351
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +LL+L+LAGR+ P G+ + P
Sbjct: 352 HRLLLQLELAGRITALPGGRYTRIDGAQGP 381
>gi|158320506|ref|YP_001513013.1| DNA protecting protein DprA [Alkaliphilus oremlandii OhILAs]
gi|158140705|gb|ABW19017.1| DNA protecting protein DprA [Alkaliphilus oremlandii OhILAs]
Length = 365
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E R+ + + PIHID + + T + + +L L++ G +
Sbjct: 301 EKSTQEELSPLEKRVYEIIRRNPIHIDLLYNETRLHPWELNPILTILEIKGYIIQISGKT 360
Query: 85 VSL 87
++
Sbjct: 361 FTV 363
>gi|150026465|ref|YP_001297291.1| protein Smf of unknown function [Flavobacterium psychrophilum
JIP02/86]
gi|149773006|emb|CAL44490.1| Protein Smf of unknown function [Flavobacterium psychrophilum
JIP02/86]
Length = 366
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E I L + D I + + +LL ++L G + P +
Sbjct: 308 SLEPEEQLIHDFLQKKGKELLDTIAIECNLPVFKLSSILLNMELKGLIRPLPGKLFEI 365
>gi|317153575|ref|YP_004121623.1| DNA protecting protein DprA [Desulfovibrio aespoeensis Aspo-2]
gi|316943826|gb|ADU62877.1| DNA protecting protein DprA [Desulfovibrio aespoeensis Aspo-2]
Length = 439
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ E ++ L +HID + G E+ V VLL L++
Sbjct: 355 ESRTRKRPGAARRSEMTLNDEERQLLAVLDGTDRVHIDTLGRTLGWESSRVSRVLLMLEV 414
Query: 74 AGRLCHHPEGKV 85
G + P
Sbjct: 415 GGAVHQLPGMWY 426
>gi|49474246|ref|YP_032288.1| DNA processing chain A [Bartonella quintana str. Toulouse]
gi|49239750|emb|CAF26132.1| DNA processing chain A [Bartonella quintana str. Toulouse]
Length = 410
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
ER + +L+ PI +D + H+G+ +YL+L+EL+LAG+L H G VSL+
Sbjct: 343 DDSERAALLSALSTTPIDLDTLSTHSGVPLQNLYLLLVELELAGKLIRHSGGYVSLS 399
>gi|158337778|ref|YP_001518954.1| DNA protecting protein DprA [Acaryochloris marina MBIC11017]
gi|158308019|gb|ABW29636.1| DNA protecting protein DprA [Acaryochloris marina MBIC11017]
Length = 376
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 13 SQSDTNHTKNINITHYPEYTQCER-----VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ +I+ + ++ Q + + D I+ + A V
Sbjct: 295 PPLSSAPAPSISEIPSTLPSVQAEILKTVSQLCQQSGDGSVPFDLIVQSVELSAGEVSGE 354
Query: 68 LLELDLAGRLCHHPEGKVS 86
+L+L+L G + P + +
Sbjct: 355 ILQLELQGLVNQLPGMRYA 373
>gi|259418008|ref|ZP_05741927.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
gi|259346914|gb|EEW58728.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
Length = 382
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 25/84 (29%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + + T +I L P +I A
Sbjct: 295 LPPMQMERAVRRPHINDLPSPPPERRSLRQTAALHQQILDRLAVAPTPEGQLIDDLDTPA 354
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ VL +L+L+G + P G +
Sbjct: 355 RKIRTVLTDLELSGEIGRGPGGVI 378
>gi|319405728|emb|CBI79351.1| DNA processing chain A [Bartonella sp. AR 15-3]
Length = 383
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q + + I ER + +L++ PI +D + ++G+ ++L+L+ELD
Sbjct: 307 PQGNAHSPNKITNETPLIGDDIERAAVLSALSSTPIDLDTLSIYSGVSLQKLHLLLIELD 366
Query: 73 LAGRLCHHPEGKVSLT 88
LAG+L H G VSL+
Sbjct: 367 LAGKLIRHSGGYVSLS 382
>gi|311747458|ref|ZP_07721243.1| putative DNA processing protein DprA [Algoriphagus sp. PR1]
gi|311302664|gb|EAZ79188.2| putative DNA processing protein DprA [Algoriphagus sp. PR1]
Length = 373
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
K E V+I + L N ID+I T I + LL L+ G
Sbjct: 300 PGEVKASKPKLDFSSRDAEEVKILKILQENGEAGIDEISFQTEIPIGQLSSKLLALEFEG 359
Query: 76 RLCHHPEGKV 85
+ P K
Sbjct: 360 IVKSLPGKKY 369
>gi|314969050|gb|EFT13148.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA1]
Length = 252
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ I SL P +D ++ TG + L +L+ G+L G + + P P
Sbjct: 7 QKMIINSLGTSPTSVDTLVELTGASPATIRRDLTDLEGHGQLRKVRGGAGGVNLRGTPMP 66
>gi|302386227|ref|YP_003822049.1| DNA protecting protein DprA [Clostridium saccharolyticum WM1]
gi|302196855|gb|ADL04426.1| DNA protecting protein DprA [Clostridium saccharolyticum WM1]
Length = 366
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ L+ P ++++II +G+ LLEL+L G +
Sbjct: 313 EKMVYSCLDLHPKNLEEIIALSGLSVSDCMSTLLELELKGCVVQ 356
>gi|254428234|ref|ZP_05041941.1| DNA protecting protein DprA, putative [Alcanivorax sp. DG881]
gi|196194403|gb|EDX89362.1| DNA protecting protein DprA, putative [Alcanivorax sp. DG881]
Length = 353
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ L + +D + TG+ P + L +L+L G + G +
Sbjct: 299 ALLAHLTSGLNSLDALQQRTGMPMPELAGQLADLELEGWVERVAGGYLKR 348
>gi|313676995|ref|YP_004054991.1| DNA protecting protein dpra [Marivirga tractuosa DSM 4126]
gi|312943693|gb|ADR22883.1| DNA protecting protein DprA [Marivirga tractuosa DSM 4126]
Length = 368
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
N E + +L NN + ID + + I + +LL L++
Sbjct: 295 ENQAAIKQKVLDLSSLNEEEQSVMNTLLQNNKELSIDILSIKSQINLNQLASILLNLEMQ 354
Query: 75 GRLCHHPEGKVSLT 88
G + P + +
Sbjct: 355 GIIKSLPGKRYQVA 368
>gi|261491953|ref|ZP_05988530.1| SMF family Rossmann fold nucleotide-binding protein [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261496244|ref|ZP_05992649.1| SMF family Rossmann fold nucleotide-binding protein [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261308075|gb|EEY09373.1| SMF family Rossmann fold nucleotide-binding protein [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261312420|gb|EEY13546.1| SMF family Rossmann fold nucleotide-binding protein [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 381
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
E S S + P + +I Q ++ PI IDD+ T + + +
Sbjct: 298 EPKPIVSTSLQAVKSSEKFAKNPPNLTACQQQIYQHISLEPIAIDDLARATELTIETLLV 357
Query: 67 VLLELDLAGRLCHHPEGKV 85
LL L+LAG + G V
Sbjct: 358 ELLGLELAGVIKQVSGGYV 376
>gi|323484746|ref|ZP_08090105.1| DNA processing protein DprA [Clostridium symbiosum WAL-14163]
gi|323691814|ref|ZP_08106071.1| smf family protein [Clostridium symbiosum WAL-14673]
gi|323401983|gb|EGA94322.1| DNA processing protein DprA [Clostridium symbiosum WAL-14163]
gi|323504180|gb|EGB19985.1| smf family protein [Clostridium symbiosum WAL-14673]
Length = 390
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ L++ P H++++I + + + LL L++ G +
Sbjct: 336 EKMLYSCLDSQPKHVEELIKISKLPSGECMAALLRLEMDGFIMQ 379
>gi|257440568|ref|ZP_05616323.1| DNA processing protein DprA [Faecalibacterium prausnitzii A2-165]
gi|257196891|gb|EEU95175.1| DNA processing protein DprA [Faecalibacterium prausnitzii A2-165]
Length = 381
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 30/82 (36%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ F + P+ R+ + ++++ +G+ ++
Sbjct: 299 KPSDLFGVLGLRGAAAPAVVRSAPDPMSETERRVLACIGPKAKGVEELGAASGLPTGLLL 358
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L++L+LAGR+ P + L
Sbjct: 359 GTLMKLELAGRVTCLPGKRYIL 380
>gi|313204519|ref|YP_004043176.1| DNA protecting protein dpra [Paludibacter propionicigenes WB4]
gi|312443835|gb|ADQ80191.1| DNA protecting protein DprA [Paludibacter propionicigenes WB4]
Length = 372
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 7/59 (11%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 31 YTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + L + + ++++ + +LLE++ G + P +
Sbjct: 312 ELSDEEQTVVSVLRQHTDGLQLNELSILLEKPVSRISSMLLEMEFKGVVKCLPGNLYKI 370
>gi|296127436|ref|YP_003634688.1| DNA protecting protein DprA [Brachyspira murdochii DSM 12563]
gi|296019252|gb|ADG72489.1| DNA protecting protein DprA [Brachyspira murdochii DSM 12563]
Length = 426
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + + + IHIDDI+ + I+ VL++L++ G + ++
Sbjct: 368 LNNEETSLYNIIKKSDKIHIDDIVEESNIKVHTAASVLMQLEIKGIIKQLSGKYYTI 424
>gi|283798137|ref|ZP_06347290.1| DNA processing protein DprA [Clostridium sp. M62/1]
gi|291074116|gb|EFE11480.1| DNA processing protein DprA [Clostridium sp. M62/1]
Length = 364
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ L+ P H++ I+ +G+ A VLL+L+L G
Sbjct: 310 EKMVYSCLDLQPKHLEQIVTESGLPAGECTAVLLKLELDGFAVQTSNQYYVR 361
>gi|188586006|ref|YP_001917551.1| DNA protecting protein DprA [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350693|gb|ACB84963.1| DNA protecting protein DprA [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 349
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ I + + I ID+++ T +Y LLEL+L G + G V
Sbjct: 293 LSSSQKAILEKIPYYEISIDELLSSTN-TDKDIYTCLLELELNGWIMRRLGGYV 345
>gi|307564746|ref|ZP_07627274.1| DNA protecting protein DprA [Prevotella amnii CRIS 21A-A]
gi|307346468|gb|EFN91777.1| DNA protecting protein DprA [Prevotella amnii CRIS 21A-A]
Length = 376
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+S+ D K I T +P+ T+ E I + + I+ + +GI + +L L
Sbjct: 298 TSKIDIARKKGIERTLFPDVTEEEERIITTLTKHNDLQINMLSIQSGIPFSKLTGLLFSL 357
Query: 72 DLAGRLCHHPEGKVSLTM 89
++ G + G L M
Sbjct: 358 EMKGIVKMLAGGIYHLYM 375
>gi|291166170|gb|EFE28216.1| Smf family protein [Filifactor alocis ATCC 35896]
Length = 360
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
I L PI+ID+I + ++ V +L L++ G + SLT
Sbjct: 301 LSEAEQNILSLLEKKSPIYIDEIAYTLQLQIKEVSSILSILEIKGFVLEMGNNLYSLT 358
>gi|295091717|emb|CBK77824.1| DNA protecting protein DprA [Clostridium cf. saccharolyticum K10]
Length = 364
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ L+ P H++ I+ +G+ A VLL+L+L G
Sbjct: 310 EKMVYSCLDLQPKHLEQIVTESGLPAGECTAVLLKLELDGFAVQTSNQYYVR 361
>gi|163868294|ref|YP_001609503.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
gi|161017950|emb|CAK01508.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
Length = 404
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 4 PQIEQNFFSSQSDT-------NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHH 56
P + NFF S N N R + +L+ PI +D + H
Sbjct: 302 PNSQLNFFEEPSSLKIEKENFNSAYEKNAHPSLTGDDAARAAVLSALSTTPIDLDTLSIH 361
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+G+ P +YL+L+EL+LAG+L H G VSL+
Sbjct: 362 SGVSLPTLYLLLVELELAGKLIRHSGGCVSLS 393
>gi|319898957|ref|YP_004159050.1| DNA processing chain A [Bartonella clarridgeiae 73]
gi|319402921|emb|CBI76472.1| DNA processing chain A [Bartonella clarridgeiae 73]
Length = 383
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
ER + +L++ PI +D + ++G+ +YL+L+ELDLAG+L H G VSL+ L
Sbjct: 316 DDIERAAVLAALSSTPIDLDTLSIYSGVPLQKLYLLLIELDLAGKLIRHSGGYVSLSS-L 374
Query: 92 PSPQ 95
PQ
Sbjct: 375 DLPQ 378
>gi|291542637|emb|CBL15747.1| DNA protecting protein DprA [Ruminococcus bromii L2-63]
Length = 419
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ + + N P+HID I I V L L++ +
Sbjct: 368 QDVYEYIGNEPVHIDKISADLKIPVFKVLTALTMLEMKDLVSALQG 413
>gi|332879161|ref|ZP_08446862.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682961|gb|EGJ55857.1| DNA protecting protein DprA [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 365
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPV 63
Q+ ++ N E V + + L N + +D + I
Sbjct: 281 LSAQDLINTLGWHNTPPKEVQQELFPTYTPEEVPVIEQLKKNGKMSLDSLSLACQIPVYQ 340
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ +L +++L G + P +
Sbjct: 341 LSNLLFQMELKGYVHPLPGKMFEI 364
>gi|237717087|ref|ZP_04547568.1| smf protein DNA processing chain A [Bacteroides sp. D1]
gi|262405855|ref|ZP_06082405.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647816|ref|ZP_06725368.1| DNA protecting protein DprA [Bacteroides ovatus SD CC 2a]
gi|294806210|ref|ZP_06765057.1| DNA protecting protein DprA [Bacteroides xylanisolvens SD CC 1b]
gi|229443070|gb|EEO48861.1| smf protein DNA processing chain A [Bacteroides sp. D1]
gi|262356730|gb|EEZ05820.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636724|gb|EFF55190.1| DNA protecting protein DprA [Bacteroides ovatus SD CC 2a]
gi|294446466|gb|EFG15086.1| DNA protecting protein DprA [Bacteroides xylanisolvens SD CC 1b]
Length = 373
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E ++ + L + I+ ++ I + +L EL++ G + G L
Sbjct: 316 LSEEEQKVIEILEKRGDLQINTLVVEADIPVQKMNTILFELEMKGVVRVLVGGMYQL 372
>gi|150388066|ref|YP_001318115.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF]
gi|149947928|gb|ABR46456.1| DNA protecting protein DprA [Alkaliphilus metalliredigens QYMF]
Length = 378
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 26/65 (40%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
P+ R+ +L P + I+ T ++ V+ V+ L+L G++
Sbjct: 308 AMEAMKIASPQVNTPTEQRVIDALFGTPKTMAQIVEETKLQQLVLLEVMTILELEGKISS 367
Query: 80 HPEGK 84
P GK
Sbjct: 368 LPGGK 372
>gi|212703031|ref|ZP_03311159.1| hypothetical protein DESPIG_01069 [Desulfovibrio piger ATCC 29098]
gi|212673619|gb|EEB34102.1| hypothetical protein DESPIG_01069 [Desulfovibrio piger ATCC 29098]
Length = 432
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQ---CERVRIKQSLNNV-PIHIDDIIHHTGIEAP 62
E + + + D + T + I L P+H+D + G
Sbjct: 347 ETDAPARKVDPGDGEGAPAQGTDGETDTAAPAQDNIVPLLREQGPLHVDALGAALGRSPA 406
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
+ VLL L++ GR+ P +
Sbjct: 407 ELAPVLLGLEIMGRIRRLPGARY 429
>gi|333029584|ref|ZP_08457645.1| DNA protecting protein DprA [Bacteroides coprosuis DSM 18011]
gi|332740181|gb|EGJ70663.1| DNA protecting protein DprA [Bacteroides coprosuis DSM 18011]
Length = 372
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + + L + ID+++ I ++ L EL++ G L G L
Sbjct: 315 LNSQERNVIEMLQLRGDLQIDNLVVLCNIPIQTMHTTLFELEMKGVLKALAGGTYHL 371
>gi|295131961|ref|YP_003582637.1| Smf family protein [Zunongwangia profunda SM-A87]
gi|294979976|gb|ADF50441.1| Smf family protein [Zunongwangia profunda SM-A87]
Length = 366
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 31 YTQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E +I L +D I + +LL ++L G + P
Sbjct: 308 ELDEEEQQIYDLLKEKGKSQLDAIALYCDFPTFKTASILLNMELKGVIRPLPGKLF 363
>gi|270295207|ref|ZP_06201408.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274454|gb|EFA20315.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 372
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 14 QSDTNHTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
T+ I +PE T+ E +RI + +HI+ ++ I + +L EL
Sbjct: 297 AEQPARTEGIQRNLFPELTEEEELVMRILMRQGD--LHINAMVVEADIPVNRMSALLFEL 354
Query: 72 DLAGRLCHHPEGKVSLTM 89
++ G + G L
Sbjct: 355 EMKGVVKAMVGGVYHLLT 372
>gi|332981422|ref|YP_004462863.1| DNA protecting protein DprA [Mahella australiensis 50-1 BON]
gi|332699100|gb|AEE96041.1| DNA protecting protein DprA [Mahella australiensis 50-1 BON]
Length = 366
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 35 ERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
E R+ + + P+ +D+ + + A V VL L++ G + P
Sbjct: 311 EEQRLLKFFQDSQPVSAEDLCVLSKMSAAKVNGVLTSLEIKGIIKQLPG 359
>gi|229496478|ref|ZP_04390192.1| Smf protein DNA processing chain A [Porphyromonas endodontalis ATCC
35406]
gi|229316375|gb|EEN82294.1| Smf protein DNA processing chain A [Porphyromonas endodontalis ATCC
35406]
Length = 368
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S + + I + IH +D++ G+ A + L L
Sbjct: 295 KSNGGEEESSSSLFVPQDLPDDPVLRLIVE---EETIHFNDLLMRLGMSAAELSNKLFTL 351
Query: 72 DLAGRLCHHPEGKVS 86
+ G + P G +
Sbjct: 352 EFDGFIKPLPGGLYA 366
>gi|189464639|ref|ZP_03013424.1| hypothetical protein BACINT_00982 [Bacteroides intestinalis DSM
17393]
gi|189436913|gb|EDV05898.1| hypothetical protein BACINT_00982 [Bacteroides intestinalis DSM
17393]
Length = 372
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVV 64
IE ++ + + I +PE + I L +H++ ++ I +
Sbjct: 289 IEAMGWNPAGEPVKPEGIQRDLFPE-LSKDEECIVGILTRQGDLHVNALVVEADIPVNRM 347
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTM 89
+L EL++ G + G L M
Sbjct: 348 TGLLFELEMKGVVRAMVGGVYHLLM 372
>gi|170719275|ref|YP_001746963.1| DNA protecting protein DprA [Pseudomonas putida W619]
gi|169757278|gb|ACA70594.1| DNA protecting protein DprA [Pseudomonas putida W619]
Length = 365
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 20/62 (32%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + + + V L EL+L GR+ + +
Sbjct: 303 LPPAVVDKPSHPLLALLHAAPQTSEALAACSELPLAQVLAQLTELELEGRVTNEAGRWFA 362
Query: 87 LT 88
Sbjct: 363 RA 364
>gi|313673068|ref|YP_004051179.1| DNA protecting protein dpra [Calditerrivibrio nitroreducens DSM
19672]
gi|312939824|gb|ADR19016.1| DNA protecting protein DprA [Calditerrivibrio nitroreducens DSM
19672]
Length = 370
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+I L P ID+I +G A + ++ ++L + +GK SL
Sbjct: 310 DGNYAKIIDILMAGPATIDEICLKSGKSASDILAIITNMELEDIIYMGSDGKYSLNRR 367
>gi|332666158|ref|YP_004448946.1| DNA protecting protein DprA [Haliscomenobacter hydrossis DSM 1100]
gi|332334972|gb|AEE52073.1| DNA protecting protein DprA [Haliscomenobacter hydrossis DSM 1100]
Length = 364
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E I L + ID + + + + +LLEL+ G + P + L
Sbjct: 306 ELSVEEKNIVNLLRHDEEKDIDALTYLSQKSNSEMATLLLELEFKGVIRALPGKRYVL 363
>gi|146298756|ref|YP_001193347.1| DNA protecting protein DprA [Flavobacterium johnsoniae UW101]
gi|146153174|gb|ABQ04028.1| DNA protecting protein DprA [Flavobacterium johnsoniae UW101]
Length = 366
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 32 TQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +I L +D I + + LL ++L G + P +
Sbjct: 309 LNPDEQKIYDFLLKNGKE--LLDIIALECDLPIFKISGTLLNMELKGIIRPLPGKMFEV 365
>gi|126662793|ref|ZP_01733792.1| Smf protein DNA processing chain A [Flavobacteria bacterium BAL38]
gi|126626172|gb|EAZ96861.1| Smf protein DNA processing chain A [Flavobacteria bacterium BAL38]
Length = 358
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E I L + D I + +LL ++L G + P +
Sbjct: 300 SLTEEEQLIYDYLQKTGKEMMDIIALECNFPIYRISSILLNMELKGVVRPLPGKMFEV 357
>gi|326334729|ref|ZP_08200936.1| SMF family DNA processing protein [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325693179|gb|EGD35111.1| SMF family DNA processing protein [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 369
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+ K I + E E +I L + +DD+ + +L ++++
Sbjct: 296 EETSAKPIAAELFVE-LSEEEEKIITYLKEHGKQTLDDLSRECSFPIHKLSNLLFQIEMK 354
Query: 75 GRLCHHPEGKVSL 87
G + P +L
Sbjct: 355 GIIRPLPGKVFAL 367
>gi|86607132|ref|YP_475895.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab]
gi|86555674|gb|ABD00632.1| DNA protecting protein DprA [Synechococcus sp. JA-3-3Ab]
Length = 381
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 26/69 (37%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + ++ + Q L N + +D ++ T ++ + LL ++L G L
Sbjct: 312 SPPPEQPPSFGPSDPQQQLLWQLLGNEILSLDALVQATQMDIATLSSTLLLMELEGWLVQ 371
Query: 80 HPEGKVSLT 88
P +
Sbjct: 372 LPGMRYQRA 380
>gi|225163857|ref|ZP_03726152.1| DNA protecting protein DprA [Opitutaceae bacterium TAV2]
gi|224801538|gb|EEG19839.1| DNA protecting protein DprA [Opitutaceae bacterium TAV2]
Length = 388
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIH-IDDIIHHTGIEA 61
P + + + T + + R+ + ID + TG+ A
Sbjct: 298 QPIPAKGSDAGDGGDTPAHVPSSTLFGGDLTDDEQRLLACFAGGAMPGIDTLTAQTGLPA 357
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
V L+ L+L + +G
Sbjct: 358 HHVSSTLMMLELKRLIAKRADGTF 381
>gi|218133651|ref|ZP_03462455.1| hypothetical protein BACPEC_01520 [Bacteroides pectinophilus ATCC
43243]
gi|217991026|gb|EEC57032.1| hypothetical protein BACPEC_01520 [Bacteroides pectinophilus ATCC
43243]
Length = 78
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
E ++ S+ +P ID II T + V +LL L+L + M
Sbjct: 18 SEEEKVYGSICLIPKSIDIIIEETHLTPLKVCEILLNLELKDMIEQVSHNYYVRKM 73
>gi|260591927|ref|ZP_05857385.1| putative DNA processing protein DprA [Prevotella veroralis F0319]
gi|260536211|gb|EEX18828.1| putative DNA processing protein DprA [Prevotella veroralis F0319]
Length = 372
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 30 EYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E RI ++L +N + I+ + T I + +L L++ G + G
Sbjct: 312 PDLSPEEERIVRTLQSNNDLQINMLSVKTDIAISRLTGILFTLEMKGLIRAMAGGCY 368
>gi|167040338|ref|YP_001663323.1| DNA protecting protein DprA [Thermoanaerobacter sp. X514]
gi|300914422|ref|ZP_07131738.1| DNA protecting protein DprA [Thermoanaerobacter sp. X561]
gi|307724342|ref|YP_003904093.1| DNA protecting protein DprA [Thermoanaerobacter sp. X513]
gi|166854578|gb|ABY92987.1| DNA protecting protein DprA [Thermoanaerobacter sp. X514]
gi|300889357|gb|EFK84503.1| DNA protecting protein DprA [Thermoanaerobacter sp. X561]
gi|307581403|gb|ADN54802.1| DNA protecting protein DprA [Thermoanaerobacter sp. X513]
Length = 362
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I + I+ V +L L L G + P K
Sbjct: 303 PLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNKY 357
>gi|282858750|ref|ZP_06267903.1| DNA protecting protein DprA [Prevotella bivia JCVIHMP010]
gi|282588499|gb|EFB93651.1| DNA protecting protein DprA [Prevotella bivia JCVIHMP010]
Length = 376
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 28/73 (38%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+ H K I T +P TQ E + + ++ + +G+ + +L L++
Sbjct: 301 LEEAHQKGIERTLFPNLTQEEECVVAALTKQNDLQVNLLSIQSGVSISTLTGILFGLEMK 360
Query: 75 GRLCHHPEGKVSL 87
G + G L
Sbjct: 361 GVVKMLAGGVYHL 373
>gi|325268282|ref|ZP_08134915.1| SMF family DNA processing protein [Prevotella multiformis DSM
16608]
gi|324989424|gb|EGC21374.1| SMF family DNA processing protein [Prevotella multiformis DSM
16608]
Length = 372
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
K I T +P E + L N + I+ + T I + VL L++
Sbjct: 298 LAQAQQKGIERTLFPH-LSPEENAVVHVLRQNNDLQINLLSVRTDIPISRLTGVLFTLEM 356
Query: 74 AGRLCHHPEGKVSL 87
G + G L
Sbjct: 357 KGVIRAMAGGCYHL 370
>gi|104779339|ref|YP_605837.1| Smf protein, DNA processing chain A [Pseudomonas entomophila L48]
gi|95108326|emb|CAK13020.1| putative Smf protein, DNA processing chain A [Pseudomonas
entomophila L48]
Length = 365
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + H +G+ V L EL+L GR+ + +
Sbjct: 303 LPPAVVDKPAHPLLALLHAAPQTSEGLAHSSGLPLAQVLASLTELELEGRVSNEAGRWFA 362
Query: 87 LT 88
Sbjct: 363 RA 364
>gi|323343753|ref|ZP_08083980.1| SMF family DNA processing protein [Prevotella oralis ATCC 33269]
gi|323095572|gb|EFZ38146.1| SMF family DNA processing protein [Prevotella oralis ATCC 33269]
Length = 375
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDL 73
I +P T E ++I + L + I+ + + + + +L +++
Sbjct: 301 LQQTRKSGIERELFPNLTD-EELQIVKVLAKTNDLQINMLSVQSNLPIARLTALLFSMEM 359
Query: 74 AGRLCHHPEGKVSL 87
G + G L
Sbjct: 360 KGVVKTLAGGVYHL 373
>gi|312115161|ref|YP_004012757.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
gi|311220290|gb|ADP71658.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
Length = 487
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ Q L+ PI IDDI TG + V+ ++ LDLAGRL
Sbjct: 428 ASLDATIASVMQLLSFSPIAIDDICRMTGKQTREVHAAIMSLDLAGRLER 477
>gi|315648145|ref|ZP_07901246.1| DNA protecting protein DprA [Paenibacillus vortex V453]
gi|315276791|gb|EFU40134.1| DNA protecting protein DprA [Paenibacillus vortex V453]
Length = 391
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQ------CERVRIKQSLNNVPIHIDDIIHHTGIE 60
E + + + ++ H E + I L P +D++I T +
Sbjct: 304 EYDSWLPKEASDTYNKERQAHRQEQPDLQAGLTNDERHIYHMLEQGPGSLDEMIERTQWD 363
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
++ VLL L + ++ P +
Sbjct: 364 FGHLHSVLLSLIIKKQITQLPGAIYKI 390
>gi|330970345|gb|EGH70411.1| SMF protein [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 372
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ P + L+ P + + G P V L EL+L GR+
Sbjct: 304 APDSDPVTPAKPAPCD---HPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRI 360
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 361 SCEAGRWFARA 371
>gi|226313080|ref|YP_002772974.1| smf protein [Brevibacillus brevis NBRC 100599]
gi|226096028|dbj|BAH44470.1| putative smf protein [Brevibacillus brevis NBRC 100599]
Length = 356
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL-LELDLAGRLCHHPEGKVSL 87
E I +++ IH+D+++ + + L + L+ G + P G +
Sbjct: 298 PLSNEEKAIVEAVTYDGIHLDELMSCLEKDQRKMLHQLVIRLEAKGAILALPGGYFAR 355
>gi|160880855|ref|YP_001559823.1| DNA protecting protein DprA [Clostridium phytofermentans ISDg]
gi|160429521|gb|ABX43084.1| DNA protecting protein DprA [Clostridium phytofermentans ISDg]
Length = 369
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
E + L++ IH+++++ T + + VL EL+ + + TM
Sbjct: 310 EGLTEVEQLVYSFLSHEAIHVEELLMKTNLNQGQLLEVLFELESKQYVRMISGQQYVRTM 369
>gi|49475582|ref|YP_033623.1| DNA processing chain A [Bartonella henselae str. Houston-1]
gi|49238389|emb|CAF27616.1| DNA processing chain A [Bartonella henselae str. Houston-1]
Length = 410
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ER + +L+ PI +D + ++G+ +YL+L+EL+LAG+L H G VSL+
Sbjct: 343 DERERRAVLSALSTTPIDLDTLSTNSGVSLSNLYLLLVELELAGKLIRHSGGYVSLS 399
>gi|300727517|ref|ZP_07060908.1| DNA processing chain A [Prevotella bryantii B14]
gi|299775220|gb|EFI71821.1| DNA processing chain A [Prevotella bryantii B14]
Length = 375
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E I L + + I T I + +L L++ G + G L
Sbjct: 315 PELNKEEQAIVNLLKKTNDLQTNIISVKTNIPINKLTSMLFTLEMKGVIKGLAGGMYHL 373
>gi|226324651|ref|ZP_03800169.1| hypothetical protein COPCOM_02436 [Coprococcus comes ATCC 27758]
gi|225207099|gb|EEG89453.1| hypothetical protein COPCOM_02436 [Coprococcus comes ATCC 27758]
Length = 365
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + + L P +DD+ TG+ V + + L L G + +
Sbjct: 308 LETKENLVYSKLGLYPRGLDDLQRETGLTPQEVMGICVSLQLKGCIQERSKNYYVRA 364
>gi|283852862|ref|ZP_06370124.1| DNA protecting protein DprA [Desulfovibrio sp. FW1012B]
gi|283571772|gb|EFC19770.1| DNA protecting protein DprA [Desulfovibrio sp. FW1012B]
Length = 437
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 29 PEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P+ I L + HID + G + V L+ L++ G + P +
Sbjct: 374 PDGLSDLEAAIAGLLGDGSKRHIDALATALGAPSGPVSQALVLLEMKGLVRKWPGMYYTR 433
Query: 88 TMH 90
+
Sbjct: 434 DVE 436
>gi|167031106|ref|YP_001666337.1| DNA protecting protein DprA [Pseudomonas putida GB-1]
gi|166857594|gb|ABY96001.1| DNA protecting protein DprA [Pseudomonas putida GB-1]
Length = 365
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + H + + V L EL+L GR+ + +
Sbjct: 303 LPPAVVDRFEHPLLALLHAAPQTSESLAHCSELPLAEVLAQLTELELDGRVSNEAGRWFA 362
Query: 87 LT 88
Sbjct: 363 RA 364
>gi|71905661|ref|YP_283248.1| SMF protein [Dechloromonas aromatica RCB]
gi|71845282|gb|AAZ44778.1| DNA protecting protein DprA [Dechloromonas aromatica RCB]
Length = 358
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
N + + I +L + P +DD++ T + A + LL L+L G + P
Sbjct: 291 NAAPAADIPSDKADEGPILTALGHDPCSLDDLVERTTMSADQLLPELLTLELCGLIATLP 350
Query: 82 EGKVSL 87
+
Sbjct: 351 GNRYQR 356
>gi|315224924|ref|ZP_07866743.1| DNA protecting protein DprA [Capnocytophaga ochracea F0287]
gi|314945037|gb|EFS97067.1| DNA protecting protein DprA [Capnocytophaga ochracea F0287]
Length = 364
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 7/82 (8%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPV 63
++ + I L N +D++ +
Sbjct: 280 TSAKDLIYQLGWDTPAPKAVQQELFVTLSPKEETISAFLKANGKQSLDELALGCQMPIYQ 339
Query: 64 VYLVLLELDLAGRLCHHPEGKV 85
+ +L ++++ G + P +
Sbjct: 340 LSNLLFQMEIKGVIKPLPGKRF 361
>gi|120602206|ref|YP_966606.1| DNA protecting protein DprA [Desulfovibrio vulgaris DP4]
gi|120562435|gb|ABM28179.1| DNA protecting protein DprA [Desulfovibrio vulgaris DP4]
Length = 668
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLEL 71
S T + P+ R+ L + H+DD+ + V LL L
Sbjct: 592 SLRATARGVHAVNPDMPKEHGDPESRLLALLRDMGEAHVDDLCRALAMAPGDVSGTLLLL 651
Query: 72 DLAGRLCHHPEGKVS 86
++ G + P + +
Sbjct: 652 EVQGVVRRLPGMRYA 666
>gi|294055361|ref|YP_003549019.1| DNA protecting protein DprA [Coraliomargarita akajimensis DSM
45221]
gi|293614694|gb|ADE54849.1| DNA protecting protein DprA [Coraliomargarita akajimensis DSM
45221]
Length = 373
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+N T + + +++ + + ID + TG A + LL L+L +
Sbjct: 306 EGAVNPTVALSPDESDLLQVFR--GGSILSIDALSEQTGKPASTISAALLGLELKQLVAK 363
Query: 80 HPEG 83
+G
Sbjct: 364 RSDG 367
>gi|315924786|ref|ZP_07921003.1| DNA processing protein DprA [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621685|gb|EFV01649.1| DNA processing protein DprA [Pseudoramibacter alactolyticus ATCC
23263]
Length = 369
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 23/70 (32%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
T +++ E + L + +D ++ +G + +L+ L+
Sbjct: 292 PLQPAVKTPSVDAEAPAVTLSAEEAALYHWLQKGILTVDALVQVSGEPIQQINALLMMLE 351
Query: 73 LAGRLCHHPE 82
L G +
Sbjct: 352 LKGAVAVDYG 361
>gi|320108287|ref|YP_004183877.1| DNA protecting protein DprA [Terriglobus saanensis SP1PR4]
gi|319926808|gb|ADV83883.1| DNA protecting protein DprA [Terriglobus saanensis SP1PR4]
Length = 410
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 32 TQCERVRIKQSLN-NVPIHIDDIIHHTG--IEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ L + I +D +I + + ++ L EL+LAG++ P T
Sbjct: 350 LSTAEQKVYDLLRMDESIQLDLLIESLEGILPSAEIFNALFELELAGKVRQIPGKNYLRT 409
>gi|220929474|ref|YP_002506383.1| DNA protecting protein DprA [Clostridium cellulolyticum H10]
gi|219999802|gb|ACL76403.1| DNA protecting protein DprA [Clostridium cellulolyticum H10]
Length = 374
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++I + + N +ID+I+ + A +L L++ G + +P +
Sbjct: 317 LSAGEIKILKVIFNGANNIDEILERSNFSAKDASSILFMLEMKGVIKQNPGKLFEV 372
>gi|288818476|ref|YP_003432824.1| DNA processing protein [Hydrogenobacter thermophilus TK-6]
gi|288787876|dbj|BAI69623.1| DNA processing protein [Hydrogenobacter thermophilus TK-6]
gi|308752066|gb|ADO45549.1| DNA protecting protein DprA [Hydrogenobacter thermophilus TK-6]
Length = 337
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + + L P D++ +G++A + L E +L G+L L
Sbjct: 284 EAQEDFLLNLL-TTPKTFDELAILSGLDAKELTAKLTEYELLGKLRRI-GAYYRLA 337
>gi|213963472|ref|ZP_03391726.1| SMF family protein [Capnocytophaga sputigena Capno]
gi|213953880|gb|EEB65208.1| SMF family protein [Capnocytophaga sputigena Capno]
Length = 364
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 8/82 (9%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPV 63
++ + + + L N +D++ I
Sbjct: 280 TSAKDLIYLLNWDTPAPKAVQQELFIDLSPDEELVANYLKENGKQALDELALGCQIPIYQ 339
Query: 64 VYLVLLELDLAGRLCHHPEGKV 85
+ +L +++L G + P
Sbjct: 340 LSNLLFQMELKGVINPLPGKMF 361
>gi|163786973|ref|ZP_02181420.1| DNA processing protein [Flavobacteriales bacterium ALC-1]
gi|159876861|gb|EDP70918.1| DNA processing protein [Flavobacteriales bacterium ALC-1]
Length = 367
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + I L + + D I + + +LL ++L G + P +
Sbjct: 309 ELEPDEKLIYNFLKDNDKELLDVIALRCEMPTYKIAGILLNMELKGVVRPLPGKLFEV 366
>gi|46580474|ref|YP_011282.1| DNA processing protein DprA [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449893|gb|AAS96542.1| DNA processing protein DprA, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234216|gb|ADP87070.1| DNA protecting protein DprA [Desulfovibrio vulgaris RCH1]
Length = 663
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLEL 71
S T + P+ R+ L + H+DD+ + V LL L
Sbjct: 587 SLRATARGVHAVNPDMPKEHGDPESRLLALLRDMGEAHVDDLCRALAMAPGDVSGTLLLL 646
Query: 72 DLAGRLCHHPEGKVS 86
++ G + P + +
Sbjct: 647 EVQGVVRRLPGMRYA 661
>gi|209964829|ref|YP_002297744.1| DNA processing protein DprA, putative [Rhodospirillum centenum SW]
gi|209958295|gb|ACI98931.1| DNA processing protein DprA, putative [Rhodospirillum centenum SW]
Length = 381
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ R + ++L+ P+ +D+++ + A VV VLLEL+LAGR+ HP G++SL
Sbjct: 324 ELERARALVLEALSPTPVLVDEVVRGCQLSAGVVLTVLLELELAGRVQRHPGGQISL 380
>gi|86135181|ref|ZP_01053763.1| Smf protein DNA processing chain A [Polaribacter sp. MED152]
gi|85822044|gb|EAQ43191.1| Smf protein DNA processing chain A [Polaribacter sp. MED152]
Length = 368
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L +D I I + +LL+++L G L P +
Sbjct: 311 LNENEQKIYDLLFEKGQKLLDVIALECNIPIFQISSILLQMELKGVLRPLPGKMFEI 367
>gi|330901112|gb|EGH32531.1| SMF protein [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 372
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + L+ P + + G P V L EL+L GR+
Sbjct: 304 APSVDPVTPAKPAPCD---HPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRI 360
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 361 SCEAGRWFARA 371
>gi|330890230|gb|EGH22891.1| DNA processing protein DprA [Pseudomonas syringae pv. mori str.
301020]
Length = 372
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
P + L+ P + + +G P V L EL+L GR+
Sbjct: 304 APGAPPETPAKPVPCD---HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRI 360
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 361 SCEAGRWFARA 371
>gi|298484629|ref|ZP_07002733.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|298160853|gb|EFI01870.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
Length = 372
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
P + L+ P + + +G P V L EL+L GR+
Sbjct: 304 APGAPPETPAKPVPCD---HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRI 360
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 361 SCEAGRWFARA 371
>gi|163754748|ref|ZP_02161870.1| putative DNA processing Smf-like protein [Kordia algicida OT-1]
gi|161325689|gb|EDP97016.1| putative DNA processing Smf-like protein [Kordia algicida OT-1]
Length = 368
Score = 47.1 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 32 TQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E I L + D I + + +LL++++ G + P
Sbjct: 311 LSSEETIIHSYLQEKGQSVLDSIALACKLPIHKIAPLLLQMEMKGVVKPLPGKLF 365
>gi|298207288|ref|YP_003715467.1| Smf protein DNA processing chain A [Croceibacter atlanticus
HTCC2559]
gi|83849924|gb|EAP87792.1| Smf protein DNA processing chain A [Croceibacter atlanticus
HTCC2559]
Length = 366
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I + L HID I + + + VLL +++ G + P +
Sbjct: 308 ELDDTEKTIYKYLQEQGKEHIDLIALGCNMPSYKIASVLLTMEMKGVIRPLPGKLFEV 365
>gi|326561730|gb|EGE12065.1| DNA protecting protein DprA [Moraxella catarrhalis 7169]
gi|326569048|gb|EGE19117.1| DNA protecting protein DprA [Moraxella catarrhalis BC1]
gi|326571737|gb|EGE21750.1| DNA protecting protein DprA [Moraxella catarrhalis BC8]
gi|326571808|gb|EGE21814.1| DNA protecting protein DprA [Moraxella catarrhalis BC7]
Length = 414
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNF-----FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT 57
HP + + ++ +H + + + + +L N P +D ++ +
Sbjct: 329 HPSQAPDTNTLVSPNPKTAAHHLQPASRSTCVPEHLAD----LYALMNEPCDLDQLVFSS 384
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+EL++ G + L
Sbjct: 385 QKDTGSLLAELMELEILGLIEQVGGRYGRL 414
>gi|308068644|ref|YP_003870249.1| Smf protein [Paenibacillus polymyxa E681]
gi|305857923|gb|ADM69711.1| Smf protein [Paenibacillus polymyxa E681]
Length = 395
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
SS + K + PE E R+ L + +D+++ T + +++ VLL L
Sbjct: 319 SSYNREQSLKLKEASKVPESETSEENRVILLLEQGTMTLDELLDATAWDFGLLHAVLLSL 378
Query: 72 DLAGRLCHHPEGKVSL 87
+ R+ K L
Sbjct: 379 IIKKRIAQLAGTKYKL 394
>gi|126439436|ref|YP_001057202.1| DNA protecting protein DprA [Burkholderia pseudomallei 668]
gi|126218929|gb|ABN82435.1| DNA protecting protein DprA [Burkholderia pseudomallei 668]
Length = 434
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 34/83 (40%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E ++ + + R+ ++ P+ ++ + T + + +
Sbjct: 330 LDEFGLDPARPVNSKRGAPTAASADADLDNDTRRLLDAIGYGPVPLELLAQRTSLPSGTL 389
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ +LL+L+LAGR+ P G+ +
Sbjct: 390 HRLLLQLELAGRVAALPGGRYTR 412
>gi|153815654|ref|ZP_01968322.1| hypothetical protein RUMTOR_01890 [Ruminococcus torques ATCC 27756]
gi|317502440|ref|ZP_07960604.1| smf family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|145847085|gb|EDK24003.1| hypothetical protein RUMTOR_01890 [Ruminococcus torques ATCC 27756]
gi|316896178|gb|EFV18285.1| smf family protein [Lachnospiraceae bacterium 8_1_57FAA]
Length = 357
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 28/74 (37%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ F + + K + + + + L P +++I+ T +E V
Sbjct: 274 LLSPEMFLEELGLSGKKTEKEGKNKKMLETQEELLYSCLGLYPKSVEEILKETKLEVRQV 333
Query: 65 YLVLLELDLAGRLC 78
+L+ L+L G +
Sbjct: 334 MEILVSLELRGYIR 347
>gi|126455418|ref|YP_001064441.1| DNA protecting protein DprA [Burkholderia pseudomallei 1106a]
gi|242314805|ref|ZP_04813821.1| DNA protecting protein DprA [Burkholderia pseudomallei 1106b]
gi|126229060|gb|ABN92600.1| DNA protecting protein DprA [Burkholderia pseudomallei 1106a]
gi|242138044|gb|EES24446.1| DNA protecting protein DprA [Burkholderia pseudomallei 1106b]
Length = 434
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 34/83 (40%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E ++ + + R+ ++ P+ ++ + T + + +
Sbjct: 330 LDEFGLDPARPVNSKRGAPTAASADADLDNDTRRLLDAIGYGPVPLELLAQRTSLPSGTL 389
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ +LL+L+LAGR+ P G+ +
Sbjct: 390 HRLLLQLELAGRVAALPGGRYTR 412
>gi|329118699|ref|ZP_08247400.1| SMF-family protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327465202|gb|EGF11486.1| SMF-family protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 422
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 27/81 (33%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ + + + + + ++ P+H D + G A ++
Sbjct: 340 RPSENIPAAAPTERPSEQTAAQAQTGGADANPLLAAMGYSPVHPDALAESLGRPAADIFA 399
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
LLEL+L GR+ G
Sbjct: 400 ELLELELEGRVAAAAGGCYQR 420
>gi|224537324|ref|ZP_03677863.1| hypothetical protein BACCELL_02202 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521055|gb|EEF90160.1| hypothetical protein BACCELL_02202 [Bacteroides cellulosilyticus
DSM 14838]
Length = 373
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
RI + +HI+ ++ T I + +L EL++ G + G L
Sbjct: 323 RILTRQGD--LHINALVVETDIPINRMISLLFELEMKGVVKALVGGVYHL 370
>gi|225010380|ref|ZP_03700852.1| SMF family protein [Flavobacteria bacterium MS024-3C]
gi|225005859|gb|EEG43809.1| SMF family protein [Flavobacteria bacterium MS024-3C]
Length = 378
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 34 CERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + Q L +N +H+D + E V+Y L+ L+L G + H P
Sbjct: 323 AEESVLYQCLFSNGKMHVDQLASVLNWEIKVLYPCLMTLELKGGVRHLPGQFY 375
>gi|327399011|ref|YP_004339880.1| DNA protecting protein DprA [Hippea maritima DSM 10411]
gi|327181640|gb|AEA33821.1| DNA protecting protein DprA [Hippea maritima DSM 10411]
Length = 333
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ T + ++ I D+I + V VL +L L G +
Sbjct: 267 EEAEKTESEVELSPLEKEVLNAMEGD-ITEDEIALKINRDIGEVSEVLFDLHLKGVVRLM 325
Query: 81 PEGKV 85
P G
Sbjct: 326 PNGSY 330
>gi|288801753|ref|ZP_06407195.1| DNA processing protein DprA [Prevotella melaninogenica D18]
gi|288335795|gb|EFC74228.1| DNA processing protein DprA [Prevotella melaninogenica D18]
Length = 372
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + I T +P+ E I + L N + I+ + I + +L L++
Sbjct: 298 LEQAQQRGIERTLFPD-LSSEEEAIVRVLAKNNDLQINLLSIQANIPIARLTGILFTLEM 356
Query: 74 AGRLCHHPEGKVSL 87
G + G L
Sbjct: 357 KGVIRAMAGGCYHL 370
>gi|302344838|ref|YP_003813191.1| DNA protecting protein DprA [Prevotella melaninogenica ATCC 25845]
gi|302149494|gb|ADK95756.1| DNA protecting protein DprA [Prevotella melaninogenica ATCC 25845]
Length = 353
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ I T +P+ E I + L N + I+ + I + +L L++ G
Sbjct: 281 QAQQRGIERTLFPD-LSSEEEAIVRVLAKNNDLQINLLSIQANIPISRLTGILFTLEMKG 339
Query: 76 RLCHHPEGKVSL 87
+ G L
Sbjct: 340 VIRAMAGGCYHL 351
>gi|237740653|ref|ZP_04571134.1| smf protein [Fusobacterium sp. 2_1_31]
gi|229422670|gb|EEO37717.1| smf protein [Fusobacterium sp. 2_1_31]
Length = 283
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ I SL++ +D I+ T I+ + L+ L++ G + G+
Sbjct: 228 SKNQQLILDSLSSE-KSLDKILEETKIDQTEILSELINLEIMGLIKSIAGGRYK 280
>gi|302186430|ref|ZP_07263103.1| SMF protein [Pseudomonas syringae pv. syringae 642]
Length = 372
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 20/71 (28%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
H P + L+ P + + G P V L EL+L GR+
Sbjct: 302 HVAPDIDPVTPAKPAPCDHPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRIS 361
Query: 79 HHPEGKVSLTM 89
+
Sbjct: 362 CEAGRWFARAT 372
>gi|167757715|ref|ZP_02429842.1| hypothetical protein CLOSCI_00045 [Clostridium scindens ATCC 35704]
gi|167664597|gb|EDS08727.1| hypothetical protein CLOSCI_00045 [Clostridium scindens ATCC 35704]
Length = 365
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/81 (13%), Positives = 25/81 (30%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ +N N + + + L P I ++ TG+ +
Sbjct: 281 LSPEDLLMELEISNMNPGQNSDENKKMLESPENMVYSCLGLFPKSIGQLLEETGLCPKEL 340
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
L+ L+L G + +
Sbjct: 341 LERLITLELEGYIKEVSKNYY 361
>gi|332291882|ref|YP_004430491.1| DNA protecting protein DprA [Krokinobacter diaphorus 4H-3-7-5]
gi|332169968|gb|AEE19223.1| DNA protecting protein DprA [Krokinobacter diaphorus 4H-3-7-5]
Length = 367
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E + + LN + D I + + + +LL+++L G + P LT
Sbjct: 309 ELTDEEKVVWRFLNENGKELMDIIALNCKLPTFKIASILLQMELKGVVRPLPGKLFELT 367
>gi|167900761|ref|ZP_02487966.1| DNA protecting protein DprA [Burkholderia pseudomallei NCTC 13177]
Length = 396
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 34/83 (40%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E ++ + + R+ ++ P+ ++ + T + + +
Sbjct: 292 LDEFGLDPARPVNSKRGAPTAASADADLDNDTRRLLDAIGYGPVPLELLAQRTSLPSGTL 351
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ +LL+L+LAGR+ P G+ +
Sbjct: 352 HRLLLQLELAGRVAALPGGRYTR 374
>gi|294011703|ref|YP_003545163.1| DNA processing protein [Sphingobium japonicum UT26S]
gi|292675033|dbj|BAI96551.1| DNA processing protein [Sphingobium japonicum UT26S]
Length = 360
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + ER + L P+ +D++I +G+ VV VLLEL+LA RL H GK
Sbjct: 297 EPPSGDVAERERASVVALLGPAPVPVDELIRLSGLGPAVVQTVLLELELAARLERHAGGK 356
Query: 85 VSLT 88
VSL+
Sbjct: 357 VSLS 360
>gi|325272508|ref|ZP_08138886.1| DNA protecting protein DprA [Pseudomonas sp. TJI-51]
gi|324102369|gb|EGB99837.1| DNA protecting protein DprA [Pseudomonas sp. TJI-51]
Length = 285
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + H + + V L EL+L GR+ + +
Sbjct: 223 LPPAVVDKFDHPLLALLHAAPQTSESLAHCSELPLAEVLAQLTELELEGRVSNEAGRWFA 282
Query: 87 LT 88
Sbjct: 283 RA 284
>gi|329929328|ref|ZP_08283081.1| DNA protecting protein DprA [Paenibacillus sp. HGF5]
gi|328936697|gb|EGG33140.1| DNA protecting protein DprA [Paenibacillus sp. HGF5]
Length = 391
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ +I L P +D++I T + ++ VLL L + +
Sbjct: 320 ERRAPRQERPDELAGLTNDERQIYHMLEQGPGSLDEMIERTRWDFGHLHSVLLSLIIKKQ 379
Query: 77 LCHHPEGKVSL 87
+ P +
Sbjct: 380 ITQLPGAIYKI 390
>gi|288929781|ref|ZP_06423624.1| DNA processing protein DprA [Prevotella sp. oral taxon 317 str.
F0108]
gi|288328882|gb|EFC67470.1| DNA processing protein DprA [Prevotella sp. oral taxon 317 str.
F0108]
Length = 375
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ I +P+ E + Q+L I+ + I + ++L +L++ G
Sbjct: 303 QATRQGIERQLFPQ-LSGEEQAVVQALQKLNDQPINQLSLTANIPISQLTVLLFQLEMKG 361
Query: 76 RLCHHPEGKVSL 87
L G L
Sbjct: 362 LLKLLAGGSYHL 373
>gi|254182255|ref|ZP_04888852.1| DNA protecting protein DprA [Burkholderia pseudomallei 1655]
gi|184212793|gb|EDU09836.1| DNA protecting protein DprA [Burkholderia pseudomallei 1655]
Length = 434
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 34/83 (40%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E ++ + + R+ ++ P+ ++ + T + + +
Sbjct: 330 LDEFGLDPARPVNSKRGAPTAASADADLDNDMRRLLDAIGYGPVPLELLAQRTSLPSGTL 389
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ +LL+L+LAGR+ P G+ +
Sbjct: 390 HRLLLQLELAGRVAALPGGRYTR 412
>gi|303326956|ref|ZP_07357398.1| DNA processing protein DprA [Desulfovibrio sp. 3_1_syn3]
gi|302862944|gb|EFL85876.1| DNA processing protein DprA [Desulfovibrio sp. 3_1_syn3]
Length = 444
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + ER + L P+ D + + + +L+ L+
Sbjct: 370 PPIPVEIPCVEAEALVPPDRKER--LLHCLRGQGPMQADALAVALDMPIHELNALLIGLE 427
Query: 73 LAGRLCHHPEGKV 85
+ GR+ P +
Sbjct: 428 MLGRVKRLPGARY 440
>gi|297544718|ref|YP_003677020.1| DNA protecting protein DprA [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842493|gb|ADH61009.1| DNA protecting protein DprA [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 362
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I H I+ V ++L L L G + P K
Sbjct: 302 SSLTEEEKEVYDFICEAPRDIEEIAGHVKIKISKVNVILSSLMLKGMIEKLPGNKY 357
>gi|87300983|ref|ZP_01083825.1| putative DNA processing protein (Smf family protein) [Synechococcus
sp. WH 5701]
gi|87284854|gb|EAQ76806.1| putative DNA processing protein (Smf family protein) [Synechococcus
sp. WH 5701]
Length = 396
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ Q+ T + + T + +L ++ + G
Sbjct: 308 LIAQLGAGPLGRPQATTTTAASPSPAT---PTGAPDQALLAALGQGA-SLEQLAQALGRS 363
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
+ LL L+LAGR+ P
Sbjct: 364 GAELATQLLHLELAGRVRAEPG 385
>gi|261400041|ref|ZP_05986166.1| putative DNA processing protein DprA [Neisseria lactamica ATCC
23970]
gi|269210264|gb|EEZ76719.1| putative DNA processing protein DprA [Neisseria lactamica ATCC
23970]
Length = 397
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + + + I + P+H D + + A
Sbjct: 311 PEKRITAVQTAYAPPPSPEGKMPSEGAACGTAHGSILDKMGFDPVHPDVLAGQLAMPAAD 370
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+Y LLEL+L G + P G+
Sbjct: 371 LYAALLELELDGSVAAMPGGRYQR 394
>gi|289578442|ref|YP_003477069.1| DNA protecting protein DprA [Thermoanaerobacter italicus Ab9]
gi|289528155|gb|ADD02507.1| DNA protecting protein DprA [Thermoanaerobacter italicus Ab9]
Length = 362
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I H I+ V ++L L L G + P K
Sbjct: 303 SLTEEEKEVYDFICEAPRDIEEIAGHVKIKISKVNVILSSLMLKGMIEKLPGNKY 357
>gi|260910931|ref|ZP_05917572.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260634922|gb|EEX52971.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 375
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ I +P+ E + Q+L I+ + I + ++L +L++ G
Sbjct: 303 QATRQGIERQLFPQ-LSNEEQAVVQALEKQNDQAINQLSLTANIPISRLTVLLFQLEMKG 361
Query: 76 RLCHHPEGKVSL 87
L G L
Sbjct: 362 ILKLLAGGCYHL 373
>gi|332519518|ref|ZP_08395985.1| SMF family protein [Lacinutrix algicola 5H-3-7-4]
gi|332045366|gb|EGI81559.1| SMF family protein [Lacinutrix algicola 5H-3-7-4]
Length = 367
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I L +N +D I + + + +LL ++L G + P +
Sbjct: 309 ELDANEKVIYNYLKDNDKQMLDVIALNCNMPIYKLAGILLNMELKGIVRPLPGKLFEV 366
>gi|219871700|ref|YP_002476075.1| Smf protein, Rossmann fold nucleotide-binding protein involved in
DNA uptake [Haemophilus parasuis SH0165]
gi|219691904|gb|ACL33127.1| Smf protein, Rossmann fold nucleotide-binding protein involved in
DNA uptake [Haemophilus parasuis SH0165]
Length = 375
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 30/81 (37%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
I+ + F ++ + ++ + ++ PI IDD+ T +
Sbjct: 293 HIQPSLFDTKPKQAVKSEPKFAKNLPELTACQQQLFEQISLEPISIDDLAKATDMAVETA 352
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
+ LL L+L G + G V
Sbjct: 353 LIELLNLELLGVVKQVSGGYV 373
>gi|167843766|ref|ZP_02469274.1| DNA protecting protein DprA [Burkholderia pseudomallei B7210]
Length = 396
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 34/83 (40%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E ++ + + R+ ++ P+ ++ + T + + +
Sbjct: 292 LDEFGLDPARPVNSKRGAPTAASADADLDNDTRRLLDAIGYGPVPLELLAQRTSLPSGTL 351
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
+ +LL+L+LAGR+ P G+ +
Sbjct: 352 HRLLLQLELAGRVAALPGGRYTR 374
>gi|284044019|ref|YP_003394359.1| DeoR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283948240|gb|ADB50984.1| transcriptional regulator, DeoR family [Conexibacter woesei DSM
14684]
Length = 254
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ RI ++L P + + G+ V LLEL+ GRL G VS H
Sbjct: 7 QDRIARTLRAEGPAAVSTLAERLGVSQATVRRDLLELERQGRLTRVYGGAVSSAEHDEP 65
>gi|256425884|ref|YP_003126537.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588]
gi|256040792|gb|ACU64336.1| DNA protecting protein DprA [Chitinophaga pinensis DSM 2588]
Length = 378
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E+ + + HID++ + + V ++L+L++ L P K L
Sbjct: 321 DDAEKHIVTLFSGDAEKHIDELRKESHLPGSQVNSLVLKLEMRHVLKSLPGQKYQL 376
>gi|294671201|ref|ZP_06736055.1| hypothetical protein NEIELOOT_02909 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307139|gb|EFE48382.1| hypothetical protein NEIELOOT_02909 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 405
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 25/67 (37%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ P + + + + PIH D + A +Y LLEL+L G +
Sbjct: 337 RPSETPLPPATASNDAAALLEKMGYGPIHPDTLAEQLNKNAADIYAALLELELGGLVAAM 396
Query: 81 PEGKVSL 87
P G+
Sbjct: 397 PGGRYQR 403
>gi|327403562|ref|YP_004344400.1| DNA protecting protein DprA [Fluviicola taffensis DSM 16823]
gi|327319070|gb|AEA43562.1| DNA protecting protein DprA [Fluviicola taffensis DSM 16823]
Length = 367
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I + + +D I + + + V LL L+ G + P + L
Sbjct: 308 ELNPREEKIVSVMQTKTELTLDTIGYLSSLTVSEVSSDLLSLEFKGLVRSLPGRRFQL 365
>gi|182625879|ref|ZP_02953645.1| DNA protecting protein DprA [Clostridium perfringens D str.
JGS1721]
gi|177908913|gb|EDT71405.1| DNA protecting protein DprA [Clostridium perfringens D str.
JGS1721]
Length = 360
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 301 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|168215353|ref|ZP_02640978.1| DNA protecting protein DprA [Clostridium perfringens CPE str.
F4969]
gi|170713271|gb|EDT25453.1| DNA protecting protein DprA [Clostridium perfringens CPE str.
F4969]
Length = 360
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 301 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|168210690|ref|ZP_02636315.1| DNA protecting protein DprA [Clostridium perfringens B str. ATCC
3626]
gi|170711272|gb|EDT23454.1| DNA protecting protein DprA [Clostridium perfringens B str. ATCC
3626]
Length = 211
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 152 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 207
>gi|168207946|ref|ZP_02633951.1| DNA protecting protein DprA [Clostridium perfringens E str.
JGS1987]
gi|170660755|gb|EDT13438.1| DNA protecting protein DprA [Clostridium perfringens E str.
JGS1987]
Length = 360
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 301 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|110803784|ref|YP_698990.1| DNA protecting protein DprA [Clostridium perfringens SM101]
gi|110684285|gb|ABG87655.1| DNA protecting protein DprA [Clostridium perfringens SM101]
Length = 360
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 301 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|110799380|ref|YP_696390.1| DNA protecting protein DprA [Clostridium perfringens ATCC 13124]
gi|168216990|ref|ZP_02642615.1| DNA protecting protein DprA [Clostridium perfringens NCTC 8239]
gi|110674027|gb|ABG83014.1| DNA protecting protein DprA [Clostridium perfringens ATCC 13124]
gi|182380904|gb|EDT78383.1| DNA protecting protein DprA [Clostridium perfringens NCTC 8239]
Length = 360
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 301 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|18310685|ref|NP_562619.1| DNA protecting protein DprA [Clostridium perfringens str. 13]
gi|18145366|dbj|BAB81409.1| Smf protein DNA processing chain A [Clostridium perfringens str.
13]
Length = 360
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 301 EENSEINQLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|189485676|ref|YP_001956617.1| DprA-like DNA processing protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287635|dbj|BAG14156.1| DprA-like DNA processing protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 364
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAG 75
I+ T+ + + + N + D I I VLL+L++ G
Sbjct: 291 TSKDKISKTNKLPSLDKLELEVLSLIENDSAGLPPDLIAQKLNIGISETAPVLLKLEING 350
Query: 76 RLCHHPEGKVSLT 88
+ P
Sbjct: 351 LIKTTPGQIYVRA 363
>gi|261878856|ref|ZP_06005283.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270334535|gb|EFA45321.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 377
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E ++ L I ++ I T I + +LL +++ G + + G L
Sbjct: 317 PDLSPEEAKVVALLRKMNDIQLNIISVRTDIPVGKLTSLLLGMEMKGIVKPYAGGTYHL 375
>gi|152994061|ref|YP_001338896.1| DNA protecting protein DprA [Marinomonas sp. MWYL1]
gi|150834985|gb|ABR68961.1| DNA protecting protein DprA [Marinomonas sp. MWYL1]
Length = 442
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 29 PEYTQCERVRIKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
PE T + + P+ D +I + ++A ++ VL+EL+L G +
Sbjct: 382 PESTSDNAKAVIAIMEQEAQPMDFDALIRQSKMDAGLMMQVLMELELYGCVE 433
>gi|146305098|ref|YP_001185563.1| DNA protecting protein DprA [Pseudomonas mendocina ymp]
gi|145573299|gb|ABP82831.1| DNA protecting protein DprA [Pseudomonas mendocina ymp]
Length = 368
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + P E+ + L+ P + + H +G V L EL+L
Sbjct: 296 RGWQTPSGQQASAAQP---GAEQHPLLTLLHAAPHSSEALAHSSGWPLAQVLAALTELEL 352
Query: 74 AGRLCHHPEGKVSL 87
G +C ++
Sbjct: 353 DGLVCCEAGRWLAR 366
>gi|167855660|ref|ZP_02478418.1| Protein smf (DNA-processing chain A) [Haemophilus parasuis 29755]
gi|167853232|gb|EDS24488.1| Protein smf (DNA-processing chain A) [Haemophilus parasuis 29755]
Length = 375
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
I+ + F ++ + + ++ + ++ PI IDD+ T +
Sbjct: 293 HIQPSLFDTKPKQAVKSDPKFAKNLPELTACQQQLFEQISLEPISIDDLAKATDMAVETT 352
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
+ LL L+L G + G V
Sbjct: 353 LIELLNLELLGVVKQVSGGYV 373
>gi|326560687|gb|EGE11055.1| DNA protecting protein DprA [Moraxella catarrhalis 46P47B1]
gi|326573495|gb|EGE23461.1| DNA protecting protein DprA [Moraxella catarrhalis O35E]
gi|326574348|gb|EGE24291.1| DNA protecting protein DprA [Moraxella catarrhalis CO72]
Length = 414
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNF-----FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT 57
HP + + ++ +H + + + + +L N P +D ++ +
Sbjct: 329 HPSQAPDTNTLASPNPKTAVHHLQPASRSTCVPEHLAD----LYALMNEPCDLDQLVFSS 384
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+EL++ G + L
Sbjct: 385 QKDTGSLLAELMELEILGLIEQVGGRYGRL 414
>gi|296114104|ref|YP_003628042.1| DNA protecting protein DprA [Moraxella catarrhalis RH4]
gi|295921798|gb|ADG62149.1| DNA protecting protein DprA [Moraxella catarrhalis RH4]
Length = 414
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNF-----FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT 57
HP + + ++ +H + + + + +L N P +D ++ +
Sbjct: 329 HPSQAPDTNTLASPNPKTAVHHLQPASRSTCVPEHLAD----LYALMNEPCDLDQLVFSS 384
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+EL++ G + L
Sbjct: 385 QKDTGSLLAELMELEILGLIEQVGGRYGRL 414
>gi|229826296|ref|ZP_04452365.1| hypothetical protein GCWU000182_01668 [Abiotrophia defectiva ATCC
49176]
gi|229789166|gb|EEP25280.1| hypothetical protein GCWU000182_01668 [Abiotrophia defectiva ATCC
49176]
Length = 366
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + +L P HI +I+ TG++ ++ VLLEL+ G +
Sbjct: 306 LESHEKIVYATLCLTPKHISEILSETGLDEGELFKVLLELEFKGYVRR 353
>gi|304383998|ref|ZP_07366454.1| SMF family DNA processing protein [Prevotella marshii DSM 16973]
gi|304334890|gb|EFM01164.1| SMF family DNA processing protein [Prevotella marshii DSM 16973]
Length = 375
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 30 EYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
E ++ L + I+ + +GI + +L L++ G +
Sbjct: 315 PDLSPEEQQVVTVLQTTNDLPINMLTIQSGIAVSKLTAILFTLEMKGVVRMMAG 368
>gi|160895226|ref|ZP_02075998.1| hypothetical protein CLOL250_02786 [Clostridium sp. L2-50]
gi|156863105|gb|EDO56536.1| hypothetical protein CLOL250_02786 [Clostridium sp. L2-50]
Length = 366
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
E I L ++I+DI +V L +++ G +
Sbjct: 306 EQLDLPEQEIFACLGRDVVYIEDICSRVDQPPALVLSTLFDMEKKGYIRQ 355
>gi|289677572|ref|ZP_06498462.1| SMF protein [Pseudomonas syringae pv. syringae FF5]
Length = 110
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + L+ P + + G P V L EL+L GR+
Sbjct: 42 APSVDPVTPAKPGPCD---HPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRI 98
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 99 SCEAGRWFARA 109
>gi|331085946|ref|ZP_08335029.1| hypothetical protein HMPREF0987_01332 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406869|gb|EGG86374.1| hypothetical protein HMPREF0987_01332 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 376
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E+ + L+ P I I+ T + P + L+ L++ G++ +G
Sbjct: 318 LETEQNIVYSCLDLNPKSIGQILAETKLSIPELMRQLVSLEMNGKIKEISKGYYVR 373
>gi|325662148|ref|ZP_08150766.1| hypothetical protein HMPREF0490_01504 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471597|gb|EGC74817.1| hypothetical protein HMPREF0490_01504 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 376
Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E+ + L+ P I I+ T + P + L+ L++ G++ +G
Sbjct: 318 LETEQNIVYSCLDLNPKSIGQILAETKLSIPELMRQLVSLEMNGKIKEISKGYYVR 373
>gi|308447376|ref|XP_003087416.1| hypothetical protein CRE_14455 [Caenorhabditis remanei]
gi|308256659|gb|EFP00612.1| hypothetical protein CRE_14455 [Caenorhabditis remanei]
Length = 561
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ H + + P E + ++ Q L+ + +D + ++ + L+EL
Sbjct: 296 ALPTQWHCAQQSESRSPMPEIPEHLFKLYQLLDWIGQDLDTLAQSANLDIAQLTSDLMEL 355
Query: 72 DLAGRLCHHPEGKVS 86
+L G +
Sbjct: 356 ELLGHCIQQSGRYLR 370
>gi|15805160|ref|NP_293846.1| smf protein [Deinococcus radiodurans R1]
gi|6457785|gb|AAF09710.1|AE001874_7 smf protein [Deinococcus radiodurans R1]
Length = 370
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
E+ R+ ++L P +DD+ TG+ P + L+ L L G
Sbjct: 310 PAPAVPDLPPEQARVLRALQ-TPATLDDLAATTGLSIPELQTALVMLQLQGLAYEVGG 366
>gi|225568716|ref|ZP_03777741.1| hypothetical protein CLOHYLEM_04795 [Clostridium hylemonae DSM
15053]
gi|225162215|gb|EEG74834.1| hypothetical protein CLOHYLEM_04795 [Clostridium hylemonae DSM
15053]
Length = 362
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 20/56 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L P + ++ TG+ A + L+ L+L G + +
Sbjct: 304 LESPENMVYSCLGLCPKSVSQLVKETGLPAGELLERLVTLELQGYIREISKNYYVR 359
>gi|330937248|gb|EGH41264.1| SMF protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 372
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + L+ P + + G P V L EL+L GR+
Sbjct: 304 APSVDPVTPAKPGPCD---HPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRI 360
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 361 SCEAGRWFARA 371
>gi|326389491|ref|ZP_08211058.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus JW 200]
gi|325994496|gb|EGD52921.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus JW 200]
Length = 362
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I + I+ V +L L L G + P K
Sbjct: 302 SSLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNKY 357
>gi|307264857|ref|ZP_07546419.1| DNA protecting protein DprA [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920115|gb|EFN50327.1| DNA protecting protein DprA [Thermoanaerobacter wiegelii Rt8.B1]
Length = 362
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I + I+ V +L L L G + P K
Sbjct: 302 SSLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNKY 357
>gi|256750729|ref|ZP_05491614.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus CCSD1]
gi|256750312|gb|EEU63331.1| DNA protecting protein DprA [Thermoanaerobacter ethanolicus CCSD1]
Length = 362
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I + I+ V +L L L G + P K
Sbjct: 302 SSLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNKY 357
>gi|167037677|ref|YP_001665255.1| DNA protecting protein DprA [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116092|ref|YP_004186251.1| DNA protecting protein DprA [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856511|gb|ABY94919.1| DNA protecting protein DprA [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929183|gb|ADV79868.1| DNA protecting protein DprA [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 362
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E + + P I++I + I+ V +L L L G + P K
Sbjct: 302 SSLTEEEKEVYDFICEAPRDIEEIAGYVKIKISKVNAILSSLMLKGMIEKLPGNKY 357
>gi|170694016|ref|ZP_02885172.1| DNA protecting protein DprA [Burkholderia graminis C4D1M]
gi|170141088|gb|EDT09260.1| DNA protecting protein DprA [Burkholderia graminis C4D1M]
Length = 431
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
Q + N+ P + ++ +L + P ++ + T +E V+ LL+L
Sbjct: 355 EPQPIAAEARAPNVRDVP---DPDAQKLLAALGHAPTSLEILATRTEMEYAVLQTTLLQL 411
Query: 72 DLAGRLCHHPEGKVSLTMH 90
+LAG + P G+ + H
Sbjct: 412 ELAGHVSALPGGRYTRASH 430
>gi|88606798|ref|YP_505506.1| putative DNA processing protein DprA [Anaplasma phagocytophilum HZ]
gi|88597861|gb|ABD43331.1| putative DNA processing protein DprA [Anaplasma phagocytophilum HZ]
Length = 344
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
T T + I ++L+ P +IDD++ ++ V+ LLEL+LAGR+
Sbjct: 273 DTQKRTSKNTTTTPVQDLILKNLSISPTNIDDLVICCNLDVSVLLAALLELELAGRVERL 332
Query: 81 PEGKVSL 87
P + +L
Sbjct: 333 PGNRFAL 339
>gi|253583758|ref|ZP_04860956.1| smf protein [Fusobacterium varium ATCC 27725]
gi|251834330|gb|EES62893.1| smf protein [Fusobacterium varium ATCC 27725]
Length = 352
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L ++D++I T ++A + +L++L++ + P GK
Sbjct: 300 EEKIFFLLEKE-KNLDELILGTSLKASEILSILMDLEIKHIIVSIPGGKYRR 350
>gi|225012503|ref|ZP_03702939.1| DNA protecting protein DprA [Flavobacteria bacterium MS024-2A]
gi|225003480|gb|EEG41454.1| DNA protecting protein DprA [Flavobacteria bacterium MS024-2A]
Length = 365
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 32 TQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E ++ + IH+D + GI+ +L+++++ G + P
Sbjct: 308 LTEEERQLFTQFSKEGKIHLDHLAFSVGIKVSTTASLLMQMEMKGMVRALPGKYF 362
>gi|332976017|gb|EGK12888.1| DNA processing chain A [Psychrobacter sp. 1501(2011)]
Length = 434
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 31/84 (36%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q+ F++ + ++ K + + + +D +I T ++ P +
Sbjct: 350 LFNQSSFTAFASNDNAKPVLKEKKSATISKHLQPLWVHIEFDFQDLDALIIKTKLDTPSL 409
Query: 65 YLVLLELDLAGRLCHHPEGKVSLT 88
L+EL+L G + LT
Sbjct: 410 LSQLMELELLGVITQVGGRYQRLT 433
>gi|297623876|ref|YP_003705310.1| DNA protecting protein DprA [Truepera radiovictrix DSM 17093]
gi|297165056|gb|ADI14767.1| DNA protecting protein DprA [Truepera radiovictrix DSM 17093]
Length = 372
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVV 64
+ S+ + + ++ P+ +DD++ TG AP +
Sbjct: 290 RADDILSELGWRRAPSAPPKRDAPELTGLPQELLTAIRQGGEPL-LDDLVTATGRAAPEL 348
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
L+ L+L G + P G+ +
Sbjct: 349 LSALMTLELKGLVRSLPSGRYA 370
>gi|225175754|ref|ZP_03729747.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
gi|225168678|gb|EEG77479.1| DNA protecting protein DprA [Dethiobacter alkaliphilus AHT 1]
Length = 361
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+I + + + + I+ + L ++L G++ P G
Sbjct: 304 EDSAYERQIIELIGSEEVSIEKLALSFTENRKSFLEALSVMELEGKVKRMPGGMYR 359
>gi|304316916|ref|YP_003852061.1| DNA protecting protein DprA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778418|gb|ADL68977.1| DNA protecting protein DprA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 362
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E ++ ++ + P I++++ V +L L G + P K
Sbjct: 304 LSSEEKKLYMAIVDCPRDIEELVEIMKFPVSKVNYLLSSLLFKGLIVRLPGNKY 357
>gi|152989517|ref|YP_001345418.1| DNA-processing protein smf chain A [Pseudomonas aeruginosa PA7]
gi|150964675|gb|ABR86700.1| protein smf (DNA-processing chain A) [Pseudomonas aeruginosa PA7]
Length = 362
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 20/72 (27%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + L P + + +G P V L EL+L GR
Sbjct: 290 EALRGWTQAGPAEAPVASLDHPLLELLRVAPYSSEGLAAASGWALPEVLAALTELELDGR 349
Query: 77 LCHHPEGKVSLT 88
+ V +
Sbjct: 350 VACEAGTWVHRS 361
>gi|295699664|ref|YP_003607557.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1002]
gi|295438877|gb|ADG18046.1| DEAD/H associated domain protein [Burkholderia sp. CCGE1002]
Length = 1509
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++P IE+N + + + + R R+ P+ +D I G+ A
Sbjct: 1022 LYPAIERNRYEPPLNAPKGYTESWSADDALVDVLRARLT---GFGPLTVDAIARPLGLPA 1078
Query: 62 PVVYLVLLELDLAGRLCH 79
+ LL L+ G L
Sbjct: 1079 GRIEPALLRLETEGYLLR 1096
>gi|330976424|gb|EGH76480.1| SMF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 372
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + P + L+ P + + G P V L EL+L GR+
Sbjct: 304 APSVDPVTPAKPGPCD---HPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRI 360
Query: 78 CHHPEGKVSLT 88
+
Sbjct: 361 SCEAGRWFARA 371
>gi|237736954|ref|ZP_04567435.1| topoisomerase [Fusobacterium mortiferum ATCC 9817]
gi|229420816|gb|EEO35863.1| topoisomerase [Fusobacterium mortiferum ATCC 9817]
Length = 356
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I +L ++D+II T ++A V +L++L++ + GK
Sbjct: 304 EKKIYNTLVKE-KNLDEIIEETSMKASEVLSILMDLEVKKIIVSIAGGKYRR 354
>gi|294678614|ref|YP_003579229.1| DNA protecting protein DprA [Rhodobacter capsulatus SB 1003]
gi|294477434|gb|ADE86822.1| DNA protecting protein DprA [Rhodobacter capsulatus SB 1003]
Length = 383
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P D +I GI+A + ++ L++ G + HP G +S
Sbjct: 340 PAPTPEDTVIRDLGIDAATLSREVIGLEIEGEITRHPGGLLSR 382
>gi|330500989|ref|YP_004377858.1| DNA protecting protein DprA [Pseudomonas mendocina NK-01]
gi|328915275|gb|AEB56106.1| DNA protecting protein DprA [Pseudomonas mendocina NK-01]
Length = 372
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 23/67 (34%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ + + L+ P + ++ +G V L EL+L G +C+
Sbjct: 305 PASAPLSDASLKRVEHPLLHLLHAAPHSTEALVQASGWPLAQVLAALTELELDGLVCNEA 364
Query: 82 EGKVSLT 88
++
Sbjct: 365 GRWLARN 371
>gi|291522666|emb|CBK80959.1| DNA protecting protein DprA [Coprococcus catus GD/7]
Length = 359
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ S+ VP D+I TG++ + L+ ++L G + + + L+
Sbjct: 302 LDNSEKVVYASICLVPRSADEIAALTGMDVQCIIHCLVRMELKGIIHRVGKNQYVLS 358
>gi|187930744|ref|YP_001901231.1| DNA protecting protein DprA [Ralstonia pickettii 12J]
gi|187727634|gb|ACD28799.1| DNA protecting protein DprA [Ralstonia pickettii 12J]
Length = 402
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 24 NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+T + +L P+ +D + TG A + LL L+L GR+ P G
Sbjct: 337 PVTVAGPAPSASEAALLDALGFDPVDLDTLCERTGQGAAALSAQLLALELDGRVERRPGG 396
Query: 84 KV 85
+
Sbjct: 397 RF 398
>gi|295093364|emb|CBK82455.1| DNA protecting protein DprA [Coprococcus sp. ART55/1]
Length = 359
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 18/55 (32%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ + HIDDI TGI V +L EL+ +
Sbjct: 305 PAEKKVYSCVRLESRHIDDICFETGISVSEVTQILYELEQKRLIKQLVRNYYVRA 359
>gi|169342679|ref|ZP_02863720.1| DNA protecting protein DprA [Clostridium perfringens C str.
JGS1495]
gi|169299185|gb|EDS81255.1| DNA protecting protein DprA [Clostridium perfringens C str.
JGS1495]
Length = 360
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ L N +HIDDII T I+ ++Y +L EL ++ P
Sbjct: 308 QLLLSILENNILHIDDIIRVTNIDTSIIYELLCELQFENKIEVIPGDYY 356
>gi|310828090|ref|YP_003960447.1| DNA protecting protein DprA [Eubacterium limosum KIST612]
gi|308739824|gb|ADO37484.1| DNA protecting protein DprA [Eubacterium limosum KIST612]
Length = 368
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E+ +I + +D+++ +G+ V L L+L R+ L
Sbjct: 313 EDPEQKKILNYVAGGYTTVDELVAVSGMGIGAVNGALSMLELDDRVKVEYGKVYIL 368
>gi|20807897|ref|NP_623068.1| Rossmann-fold nucleotide-binding protein involved in DNA uptake
[Thermoanaerobacter tengcongensis MB4]
gi|254479480|ref|ZP_05092805.1| DNA protecting protein DprA, putative [Carboxydibrachium pacificum
DSM 12653]
gi|20516463|gb|AAM24672.1| predicted Rossmann-fold nucleotide-binding protein involved in DNA
uptake [Thermoanaerobacter tengcongensis MB4]
gi|214034584|gb|EEB75333.1| DNA protecting protein DprA, putative [Carboxydibrachium pacificum
DSM 12653]
Length = 362
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + + + P +++I + ++ + +L L L G + P K
Sbjct: 303 SLTEDEKVVYEFIKEAPRDVEEISYTLNMKMSKLNSILTSLMLKGLIDRLPGNKY 357
>gi|260892472|ref|YP_003238569.1| DNA protecting protein DprA [Ammonifex degensii KC4]
gi|260864613|gb|ACX51719.1| DNA protecting protein DprA [Ammonifex degensii KC4]
Length = 375
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
E I L + +++++ + +L L+L G + G LT
Sbjct: 302 LNPEEEEIVSLLAAGFLSLEELVERGKMPVDACLSLLSMLELKGVVRPGGGGTYLLT 358
>gi|300858734|ref|YP_003783717.1| hypothetical protein cpfrc_01317 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686188|gb|ADK29110.1| hypothetical protein cpfrc_01317 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206441|gb|ADL10783.1| SMF DNA recombination-mediator protein A [Corynebacterium
pseudotuberculosis C231]
gi|302330997|gb|ADL21191.1| Rossmann-fold nucleotide-binding protein/SMF [Corynebacterium
pseudotuberculosis 1002]
gi|308276683|gb|ADO26582.1| Rossmann-fold nucleotide-binding protein/SMF [Corynebacterium
pseudotuberculosis I19]
Length = 391
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + +RI SL P + I +G+ + +LLEL G + G
Sbjct: 323 APNAVQKLSRNELRIYDSLGAEPEVTEVIARRSGVSIGLAVHLLLELSNKGMVQREGAG 381
>gi|304388917|ref|ZP_07370964.1| DNA protecting protein DprA [Neisseria meningitidis ATCC 13091]
gi|304337051|gb|EFM03238.1| DNA protecting protein DprA [Neisseria meningitidis ATCC 13091]
Length = 395
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEAAAGGTAHGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|225849802|ref|YP_002730036.1| protein smf (DNA-processing chain A) [Persephonella marina EX-H1]
gi|225645083|gb|ACO03269.1| protein smf (DNA-processing chain A) [Persephonella marina EX-H1]
Length = 352
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+I L+ P HID I I + ++L +++L G +
Sbjct: 297 LSEIEKKILFILS-SPEHIDIISEKMNISVSDLMVILFDMELKGLITSENG 346
>gi|326562328|gb|EGE12654.1| DNA protecting protein DprA [Moraxella catarrhalis 103P14B1]
gi|326575532|gb|EGE25457.1| DNA protecting protein DprA [Moraxella catarrhalis 101P30B1]
Length = 414
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 3 HPQIEQNF-----FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT 57
HP + +S++ +H + + + + +L N P +D ++ +
Sbjct: 329 HPSQAPDTNTLASLNSKTAVHHLQPASRSTCVPEHLAD----LYALMNEPCDLDQLVFSS 384
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+EL++ G + L
Sbjct: 385 QKDTGSLLAELMELEILGLIEQVGGRYGRL 414
>gi|161870938|ref|YP_001600118.1| DNA processing chain A [Neisseria meningitidis 053442]
gi|161596491|gb|ABX74151.1| DNA processing chain A [Neisseria meningitidis 053442]
Length = 395
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEAAAGGTAHGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|332653525|ref|ZP_08419270.1| DNA processing protein DprA [Ruminococcaceae bacterium D16]
gi|332518671|gb|EGJ48274.1| DNA processing protein DprA [Ruminococcaceae bacterium D16]
Length = 410
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 4 PQIEQNFFSSQSDTNHT------KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT 57
P+ + + I+++ E +++ + ++ D ++ T
Sbjct: 314 PKEHKEEPKPEPQQEEPKEKAGRPKISLSEQRERFTDDQLVVLHAMLEGADTADVLVDRT 373
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I A V L L + G P G+ +
Sbjct: 374 QIPARRVLSALTMLQVDGAAEQRPGGRYA 402
>gi|325135225|gb|EGC57850.1| putative DNA processing protein DprA [Neisseria meningitidis
M13399]
Length = 397
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 25/72 (34%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + + I + P+H D + + A +Y LLEL+L G
Sbjct: 323 APPPSPEGKMPSEGAACGTDPGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELELDG 382
Query: 76 RLCHHPEGKVSL 87
+ P G+
Sbjct: 383 SVAAMPGGRYQR 394
>gi|254671143|emb|CBA08189.1| DNA processing chain A [Neisseria meningitidis alpha153]
Length = 395
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEAAAGGTAHGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|325145438|gb|EGC67714.1| putative DNA processing protein DprA [Neisseria meningitidis
M01-240013]
gi|325205209|gb|ADZ00662.1| putative DNA processing protein DprA [Neisseria meningitidis
M04-240196]
Length = 397
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 25/72 (34%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + + I + P+H D + + A +Y LLEL+L G
Sbjct: 323 APPPSPEGKMPSEGAACGTDPGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELELDG 382
Query: 76 RLCHHPEGKVSL 87
+ P G+
Sbjct: 383 SVAAMPGGRYQR 394
>gi|325133183|gb|EGC55854.1| putative DNA processing protein DprA [Neisseria meningitidis M6190]
Length = 395
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEAAAGGTAHGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|86608165|ref|YP_476927.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556707|gb|ABD01664.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 385
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 23/58 (39%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++ + Q L + +D + + ++ + LL ++L G L P +
Sbjct: 327 PSDPQQQLLWQLLGEGILSLDALAQASQMDIATLSSTLLLMELEGWLVQLPGMRYQRA 384
>gi|66043292|ref|YP_233133.1| SMF protein [Pseudomonas syringae pv. syringae B728a]
gi|63253999|gb|AAY35095.1| SMF protein [Pseudomonas syringae pv. syringae B728a]
Length = 372
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 19/64 (29%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
P + L+ P + + G P V L EL+L GR+
Sbjct: 308 DPVTPAKPVPCDHPLLALLHAAPHTSEGLSVSCGWPLPKVLAGLTELELDGRISCEAGRW 367
Query: 85 VSLT 88
+
Sbjct: 368 FARA 371
>gi|149369266|ref|ZP_01889118.1| Smf protein DNA processing chain A [unidentified eubacterium SCB49]
gi|149356693|gb|EDM45248.1| Smf protein DNA processing chain A [unidentified eubacterium SCB49]
Length = 380
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVY 65
++ K T E + L +D I I
Sbjct: 298 AEDIIFHLGWQVENKKPQQTSLFVELTDEEKIVFNYLKGKEKELLDIIAIECKIPTYKAA 357
Query: 66 LVLLELDLAGRLCHHPEGKVSLT 88
+LL +++ G + P L
Sbjct: 358 TLLLNMEIKGVIRPLPGKLFQLA 380
>gi|319945033|ref|ZP_08019295.1| DNA processing SMF protein [Lautropia mirabilis ATCC 51599]
gi|319741603|gb|EFV94028.1| DNA processing SMF protein [Lautropia mirabilis ATCC 51599]
Length = 424
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 24/70 (34%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
+D PE + + L P+ + + G + + + L+L
Sbjct: 350 ADQESGAVEQAPSRPEPPDDDSRDLFTILAASPMSAEALASRLGWPIDRILITIQLLELG 409
Query: 75 GRLCHHPEGK 84
G + H +G+
Sbjct: 410 GYIGRHVDGR 419
>gi|258648286|ref|ZP_05735755.1| smf protein [Prevotella tannerae ATCC 51259]
gi|260852205|gb|EEX72074.1| smf protein [Prevotella tannerae ATCC 51259]
Length = 368
Score = 44.8 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ T ++ L + +D + + VV +L +L++ G +
Sbjct: 299 EASPATDLFADLTRNEQKLIAVLKQHDCRTLDQLAAEADLAHSVVASLLFDLNMRGFVKT 358
Query: 80 HPEGKVSL 87
P G L
Sbjct: 359 LPGGAYRL 366
>gi|225019249|ref|ZP_03708441.1| hypothetical protein CLOSTMETH_03202 [Clostridium methylpentosum
DSM 5476]
gi|224947880|gb|EEG29089.1| hypothetical protein CLOSTMETH_03202 [Clostridium methylpentosum
DSM 5476]
Length = 369
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 28/72 (38%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
S + T + + + V + +++ + P+ + TG+ + +L +L+
Sbjct: 294 SVAATLPEEGTAHSPDLSELSSQEVELYRAMPDDPVDTGYLSAKTGLLVSDLMQMLTKLE 353
Query: 73 LAGRLCHHPEGK 84
L+G +
Sbjct: 354 LSGAVRKTAGRY 365
>gi|261407992|ref|YP_003244233.1| DNA protecting protein DprA [Paenibacillus sp. Y412MC10]
gi|261284455|gb|ACX66426.1| DNA protecting protein DprA [Paenibacillus sp. Y412MC10]
Length = 391
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ +I L P +D++I T + ++ VLL L + +
Sbjct: 320 ERRAPRQERPDELAGLTNDERQIYHMLEQGPGSLDEMIECTRWDFGHLHSVLLSLIIKKQ 379
Query: 77 LCHHPEGKVSL 87
+ P +
Sbjct: 380 ITQLPGAIYKI 390
>gi|254820364|ref|ZP_05225365.1| smf family protein [Mycobacterium intracellulare ATCC 13950]
Length = 267
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 20 TKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ R+ ++L +D+I +G+ V L L+LAG +
Sbjct: 185 PDEPRPVTPLDGLSEAERRVYEALPGRGAATVDEIAVASGLVPEQVLGPLAMLELAGLVQ 244
Query: 79 HHPE 82
Sbjct: 245 RQDG 248
>gi|163816842|ref|ZP_02208205.1| hypothetical protein COPEUT_03032 [Coprococcus eutactus ATCC 27759]
gi|158448099|gb|EDP25094.1| hypothetical protein COPEUT_03032 [Coprococcus eutactus ATCC 27759]
Length = 360
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ + HIDDI G+ +L EL+ +
Sbjct: 306 PAEKKVYSCVRLESRHIDDICFEAGMTVSETAQILFELEKKRLVKQLVRNYYCRA 360
>gi|291563109|emb|CBL41925.1| DNA protecting protein DprA [butyrate-producing bacterium SS3/4]
Length = 368
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ S+++ P ++++I G+ LL+L+LAG +
Sbjct: 315 ENLVYASVDSRPRYLEEIAALCGLSVTECMEALLKLELAGLV 356
>gi|255319593|ref|ZP_05360805.1| DNA protecting protein DprA [Acinetobacter radioresistens SK82]
gi|262380779|ref|ZP_06073932.1| DNA protecting protein DprA [Acinetobacter radioresistens SH164]
gi|255303348|gb|EET82553.1| DNA protecting protein DprA [Acinetobacter radioresistens SK82]
gi|262297727|gb|EEY85643.1| DNA protecting protein DprA [Acinetobacter radioresistens SH164]
Length = 376
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERV--RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ H++ ++ PE Q + Q L+ V + +D I + A + L+E
Sbjct: 296 ALPTQWHSQQQKVSSVPEPAQVPEHLFELYQQLDWVGLDLDQIALKLPLSAAELTGHLME 355
Query: 71 LDLAGRLCHHPEGKVS 86
L+L G +
Sbjct: 356 LELLGLCVQQSGRYLR 371
>gi|322436363|ref|YP_004218575.1| DNA protecting protein DprA [Acidobacterium sp. MP5ACTX9]
gi|321164090|gb|ADW69795.1| DNA protecting protein DprA [Acidobacterium sp. MP5ACTX9]
Length = 404
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHH--TGIEAPVVYLVLLELDLAGRLCHHPE-GKVS 86
+ + + I +D+++ + + ++ L EL+LAGR+ P V
Sbjct: 348 ERLVFARIRHDEAIQLDELMEQMEAELASAEIFTALFELELAGRVKALPGKNYVR 402
>gi|237801644|ref|ZP_04590105.1| DNA processing protein DprA [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331024503|gb|EGI04559.1| DNA processing protein DprA [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 371
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 20/63 (31%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
P + L+ P + + +G P V L EL+L GR+
Sbjct: 308 APEPVRAAPCNHPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISSEAGRWF 367
Query: 86 SLT 88
+
Sbjct: 368 ARA 370
>gi|71066689|ref|YP_265416.1| DNA processing protein [Psychrobacter arcticus 273-4]
gi|71039674|gb|AAZ19982.1| possible DNA processing protein [Psychrobacter arcticus 273-4]
Length = 405
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCER-VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ T++ I P E + + L+ +D +I T + + L+E
Sbjct: 329 PPTTSKKTTESHQIKPSPSINIPEHLTTLFEKLDWHGQDLDALILATNLAPAQLIGQLME 388
Query: 71 LDLAGRLCHHPEGKVSL 87
L+L G + + +
Sbjct: 389 LELVGAITVQGGRYLRI 405
>gi|262067707|ref|ZP_06027319.1| DNA protecting protein DprA [Fusobacterium periodonticum ATCC
33693]
gi|291378432|gb|EFE85950.1| DNA protecting protein DprA [Fusobacterium periodonticum ATCC
33693]
Length = 284
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ I SL+ D I+ T I + L+ L++ G + G+
Sbjct: 232 QDLILNSLSTE-KSFDQILEETKIAQTEILSELINLEIMGLIKSIAGGRYK 281
>gi|319408534|emb|CBI82187.1| DNA processing chain A [Bartonella schoenbuchensis R1]
Length = 404
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
F + + + + ER+ + +L+ PI +D + H+ I +YL+
Sbjct: 314 PIQFQQEGFSLPNTETDKSAS-TRNDSERLAVLSALSTTPIDLDTLSSHSNIPLQNLYLL 372
Query: 68 LLELDLAGRLCHHPEGKVSLTMHLP--SPQ 95
L+EL+LAG+L H +G VSL+ P +PQ
Sbjct: 373 LVELELAGKLIRHSDGCVSLSALNPPQAPQ 402
>gi|154500973|ref|ZP_02039011.1| hypothetical protein BACCAP_04659 [Bacteroides capillosus ATCC
29799]
gi|150269997|gb|EDM97516.1| hypothetical protein BACCAP_04659 [Bacteroides capillosus ATCC
29799]
Length = 408
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ IT + I +L + DD++ T I A V L L + G +
Sbjct: 333 PDEMAYITLEDGALTDDERDILLALEGRGLRTDDLVELTQIPARRVSSALTMLQIHGYVE 392
Query: 79 HHPEGKV 85
+
Sbjct: 393 EKAGRRF 399
>gi|134102480|ref|YP_001108141.1| DNA processing chain A [Saccharopolyspora erythraea NRRL 2338]
gi|291004129|ref|ZP_06562102.1| DNA processing chain A [Saccharopolyspora erythraea NRRL 2338]
gi|133915103|emb|CAM05216.1| DNA processing chain A [Saccharopolyspora erythraea NRRL 2338]
Length = 389
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYL 66
+ S T + ++ +L++ D++ +G+ V
Sbjct: 307 REVLSPLGVGPTTDLPVPAKATDSLDRVAKQLHDALSDSAATSADELARDSGLPLRKVRA 366
Query: 67 VLLELDLAGRLCH 79
+L L+LAG
Sbjct: 367 LLPALELAGLAVR 379
>gi|16126686|ref|NP_421250.1| dprA protein [Caulobacter crescentus CB15]
gi|221235465|ref|YP_002517902.1| DNA processing protein [Caulobacter crescentus NA1000]
gi|13423992|gb|AAK24418.1| dprA protein [Caulobacter crescentus CB15]
gi|220964638|gb|ACL95994.1| DNA processing protein [Caulobacter crescentus NA1000]
Length = 365
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYT-----QCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++ S S H + + + R R+ L+ P+ +D++ A
Sbjct: 279 AEDVLRSLSGQTHLREQDRAYEALPDMDIDHDALRERVAALLSPTPVSRNDLVRAAAAPA 338
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVS 86
V L+EL LA R G V+
Sbjct: 339 SAVMAALVELSLARRAELLDGGMVA 363
>gi|169831256|ref|YP_001717238.1| selenocysteine-specific translation elongation factor [Candidatus
Desulforudis audaxviator MP104C]
gi|169638100|gb|ACA59606.1| selenocysteine-specific translation elongation factor [Candidatus
Desulforudis audaxviator MP104C]
Length = 635
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
P++ +++ TG+E V V EL+ G L P G
Sbjct: 391 GPAPLNENEVAQGTGLEPDTVAAVCRELEAGGALRRLPGG 430
>gi|258405017|ref|YP_003197759.1| DNA protecting protein DprA [Desulfohalobium retbaense DSM 5692]
gi|257797244|gb|ACV68181.1| DNA protecting protein DprA [Desulfohalobium retbaense DSM 5692]
Length = 395
Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSS--QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTG 58
+ P + + L+ +H+D +
Sbjct: 298 LGPMVSVTSPRPGALPLDPPQDRSASELTWRGGSALENAVVARLSEEDRVHVDVFLRELA 357
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + LL L++ + P +L
Sbjct: 358 DSSQAINHALLMLEMQEVVEKLPGMYYALA 387
>gi|300865695|ref|ZP_07110461.1| DNA processing protein [Oscillatoria sp. PCC 6506]
gi|300336291|emb|CBN55611.1| DNA processing protein [Oscillatoria sp. PCC 6506]
Length = 369
Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 31/83 (37%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
S+Q ++ ++ + P + + ++ +++ D I+ G+ V
Sbjct: 286 LDSAQLDSAQLNSPQQLSLFPENPPPILEPDLAKVLEAIPFESTVFDLIVERAGLAPGEV 345
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
LL+L+L + P +
Sbjct: 346 SSALLQLELLELVSQLPGMRYQR 368
>gi|317478243|ref|ZP_07937408.1| DNA recombination-mediator protein A [Bacteroides sp. 4_1_36]
gi|316905550|gb|EFV27339.1| DNA recombination-mediator protein A [Bacteroides sp. 4_1_36]
Length = 372
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q N+ + VRI + +HI+ ++ I + +L EL+
Sbjct: 298 EQPARTEGIQRNLFPELTEEEELVVRILMRQGD--LHINAMVVEADIPVNRMSALLFELE 355
Query: 73 LAGRLCHHPEGKVSLTM 89
+ G + G L
Sbjct: 356 MKGVVKAMVGGVYHLLT 372
>gi|120403195|ref|YP_953024.1| transcriptional regulator, TrmB [Mycobacterium vanbaalenii PYR-1]
gi|119956013|gb|ABM13018.1| DNA protecting protein DprA [Mycobacterium vanbaalenii PYR-1]
Length = 379
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 25 ITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + + ++L +D+I +G+ A V L L++ G + H
Sbjct: 309 PVRPLDGLSGVQRLVYEALPARGARTVDEIGRDSGVPAAQVLGPLTILEIDGLVERHEGK 368
>gi|160891697|ref|ZP_02072700.1| hypothetical protein BACUNI_04152 [Bacteroides uniformis ATCC 8492]
gi|156859104|gb|EDO52535.1| hypothetical protein BACUNI_04152 [Bacteroides uniformis ATCC 8492]
Length = 372
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q N+ + VRI + +HI+ ++ I + +L EL+
Sbjct: 298 EQPARTEGIQRNLFPELTEEEELVVRILMRQGD--LHINAMVVEADIPVNRMSALLFELE 355
Query: 73 LAGRLCHHPEGKVSLTM 89
+ G + G L
Sbjct: 356 MKGVVKAMVGGVYHLLT 372
>gi|220904239|ref|YP_002479551.1| DNA protecting protein DprA [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868538|gb|ACL48873.1| DNA protecting protein DprA [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 442
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R + L P+ DD+ I + ++L+ L++ G++C P + +
Sbjct: 380 RAALLDCLRQRGPMQADDLACALDISVADLNVMLVGLEMLGQVCRLPGARYA 431
>gi|86131171|ref|ZP_01049770.1| Smf protein DNA processing chain A [Dokdonia donghaensis MED134]
gi|85818582|gb|EAQ39742.1| Smf protein DNA processing chain A [Dokdonia donghaensis MED134]
Length = 367
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + + L + + D I + + + +LL+++L G + P +
Sbjct: 309 ELTDEEKLVWRFLKDNGKELMDIIALNCKLPTYKIASILLQMELKGVIRPLPGKLFEI 366
>gi|313496441|gb|ADR57807.1| DprA [Pseudomonas putida BIRD-1]
Length = 365
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + H + V L EL+L GR+ + +
Sbjct: 303 LPPAVMDRFDHPLLALLHAAPQTSESLAHCSEQPLADVLAQLTELELEGRVSNEAGRWFA 362
Query: 87 LT 88
Sbjct: 363 RA 364
>gi|94499924|ref|ZP_01306460.1| Smf protein [Oceanobacter sp. RED65]
gi|94428125|gb|EAT13099.1| Smf protein [Oceanobacter sp. RED65]
Length = 391
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 29 PEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
PE Q E ++ + L+ + ++ +I HTG+ + +LL+++L + +
Sbjct: 327 PEGMQPEHYQVYRFLDQGGVGMEQLIQHTGLSVSKLNELLLDMELNMWVTNEQG 380
>gi|331011870|gb|EGH91926.1| DNA processing protein DprA [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 123
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ P + + +G P V L EL+L GR+ +
Sbjct: 68 PCDHPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISCEAGRWFARA 122
>gi|209524259|ref|ZP_03272809.1| DNA protecting protein DprA [Arthrospira maxima CS-328]
gi|209495350|gb|EDZ95655.1| DNA protecting protein DprA [Arthrospira maxima CS-328]
Length = 376
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 31/88 (35%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + + + + + +I ++ + P D I+ +G++
Sbjct: 289 LLEQLGAIPQLDTPTQLSILEQTKPRPESPNLDPDLAKILNAIASQPTPFDLIVEQSGMD 348
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
A V LL+L+L + P +
Sbjct: 349 AATVSSQLLQLELLELVTQLPGMRYQRA 376
>gi|317063578|ref|ZP_07928063.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313689254|gb|EFS26089.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 355
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L ++D++I + +A + +L++L++ + P GK
Sbjct: 303 EEKIFFLLEKE-KNLDELILESSFKAGEILSILMDLEIKHAIVSIPGGKYRR 353
>gi|257469331|ref|ZP_05633425.1| Smf protein [Fusobacterium ulcerans ATCC 49185]
Length = 352
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L ++D++I + +A + +L++L++ + P GK
Sbjct: 300 EEKIFFLLEKE-KNLDELILESSFKAGEILSILMDLEIKHAIVSIPGGKYRR 350
>gi|229829215|ref|ZP_04455284.1| hypothetical protein GCWU000342_01302 [Shuttleworthia satelles DSM
14600]
gi|229792378|gb|EEP28492.1| hypothetical protein GCWU000342_01302 [Shuttleworthia satelles DSM
14600]
Length = 385
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
H + E+ ++ Q L+ P+ +D ++ + ++ VL EL
Sbjct: 315 HFQPREDLRRLPPLTREQEKLYQCLDFYPMDLDQLVKRSELDYLQAVRVLTEL 367
>gi|160947178|ref|ZP_02094345.1| hypothetical protein PEPMIC_01111 [Parvimonas micra ATCC 33270]
gi|158446312|gb|EDP23307.1| hypothetical protein PEPMIC_01111 [Parvimonas micra ATCC 33270]
Length = 364
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + I +N P + I TG +L L+L G + G +
Sbjct: 308 LDAKELLIYNLINEEPKSQNKISTITGFSIIETNTILTALELKGFIKELNGGIFVV 363
>gi|254370427|ref|ZP_04986432.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
gi|151568670|gb|EDN34324.1| predicted protein [Francisella tularensis subsp. tularensis FSC033]
Length = 139
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
I S++ ID II + + V +L EL+L +
Sbjct: 81 SLNESERIILGSIDRELTTIDKIIIKSKLPYNQVTSILFELELKSLI 127
>gi|120437576|ref|YP_863262.1| Smf family protein [Gramella forsetii KT0803]
gi|117579726|emb|CAL68195.1| Smf family protein [Gramella forsetii KT0803]
Length = 366
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 31 YTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + R+ + L +D + + +LL ++L G + P +
Sbjct: 308 ELEEDEQRLYEFLKLQGKTELDMVALNCNFPTFKTASLLLNMELKGAIRPLPGKLFEV 365
>gi|85711004|ref|ZP_01042065.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Idiomarina baltica OS145]
gi|85695408|gb|EAQ33345.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Idiomarina baltica OS145]
Length = 347
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ T + +++N P+ +D+++ TG+ V LL L+L G +
Sbjct: 277 SEPSQQTRCTIPKHLANNPLFANVSNDPVSLDELVERTGLSVAEVSEQLLLLELEGLITA 336
Query: 80 HPEGKVSL 87
P G + +
Sbjct: 337 IPGGYIKV 344
>gi|326793338|ref|YP_004311158.1| DNA protecting protein DprA [Marinomonas mediterranea MMB-1]
gi|326544102|gb|ADZ89322.1| DNA protecting protein DprA [Marinomonas mediterranea MMB-1]
Length = 442
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 29 PEYTQCERVRIKQSLNNVPI--HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P+Y + + L+ + D++I T AP + L+EL+L + + +
Sbjct: 382 PDYLSEDAKTVFSHLDRERVGLDFDELIRLTNWPAPNLMQTLMELELNSLISNQQGMYLK 441
>gi|254430794|ref|ZP_05044497.1| bacterial regulatory protein, ArsR family [Cyanobium sp. PCC
7001]
gi|197625247|gb|EDY37806.1| bacterial regulatory protein, ArsR family [Cyanobium sp. PCC
7001]
Length = 101
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP-EGKVSLTMHL 91
+ R+ + ++L + P+++ ++ TG+ +V L L +AG + P V ++
Sbjct: 13 EPNRLAVLEALRHGPLNVTAVVERTGLSQALVSKHLKLLTIAGVVQRRPEGALVYYAVND 72
Query: 92 PS 93
P+
Sbjct: 73 PA 74
>gi|26986814|ref|NP_742239.1| DNA protecting protein DprA [Pseudomonas putida KT2440]
gi|24981411|gb|AAN65703.1|AE016197_1 smf protein [Pseudomonas putida KT2440]
Length = 365
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + H + V L EL+L GR+ + +
Sbjct: 303 LPPAVVDKFDHPLLALLHAAPQTSESLAHCSEQPLADVLAQLTELELEGRVSNEAGRWFA 362
Query: 87 LT 88
Sbjct: 363 RA 364
>gi|210610054|ref|ZP_03288233.1| hypothetical protein CLONEX_00419 [Clostridium nexile DSM 1787]
gi|210152665|gb|EEA83671.1| hypothetical protein CLONEX_00419 [Clostridium nexile DSM 1787]
Length = 358
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 29/74 (39%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ S K +T + + L+ P +++++ TG+ P +
Sbjct: 274 LSPEDLLEELSFVCEEKVKKLTENKIALESPENLVYSCLDLYPKNLNELADLTGLTIPAL 333
Query: 65 YLVLLELDLAGRLC 78
VL+ L+L G +
Sbjct: 334 MDVLVSLELQGYIR 347
>gi|254519203|ref|ZP_05131259.1| SMF family protein [Clostridium sp. 7_2_43FAA]
gi|226912952|gb|EEH98153.1| SMF family protein [Clostridium sp. 7_2_43FAA]
Length = 348
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ + ++N P H+DDII ++ V++ +L E+ + P + ++
Sbjct: 298 LLKVIDNEPKHLDDIIESVNVDRKVLFELLFEMQNRNEIICLPGNYYAKSL 348
>gi|157283995|ref|YP_001468263.1| hypothetical protein Krad_4681 [Kineococcus radiotolerans SRS30216]
gi|151363137|gb|ABS06139.1| hypothetical protein Krad_4681 [Kineococcus radiotolerans SRS30216]
Length = 147
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
P RI L+ PI ++ TGI+ + LL+L
Sbjct: 74 EPEGARGTFEPPAAPLPADTL-DRIVGCLHRDPIAFGVLVERTGIDVDTLRAGLLQLQKQ 132
Query: 75 GRLCHHPE 82
GR
Sbjct: 133 GRADIDYG 140
>gi|310816234|ref|YP_003964198.1| DNA processing protein DprA, putative [Ketogulonicigenium vulgare
Y25]
gi|308754969|gb|ADO42898.1| DNA processing protein DprA, putative [Ketogulonicigenium vulgare
Y25]
Length = 358
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
D + P RI ++ P+ + GI+A + L L++L+L G
Sbjct: 282 DAPPPQAALALSAPLSLADPSARILAQISASPVPEHVLRDTLGIDARSLSLALIDLELDG 341
Query: 76 RLCHHPEGKVSL 87
+ G V+L
Sbjct: 342 AIHRPSSGLVAL 353
>gi|310641535|ref|YP_003946293.1| DNA protecting protein dpra [Paenibacillus polymyxa SC2]
gi|309246485|gb|ADO56052.1| DNA protecting protein DprA [Paenibacillus polymyxa SC2]
Length = 409
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ E E R+ L + +D+++ T + +++ VLL L + R+ K
Sbjct: 347 SKASESETSEEKRVVLLLEQGTMTLDELLDATAWDFGLLHAVLLSLIIKKRIAQLAGTKY 406
Query: 86 SL 87
L
Sbjct: 407 KL 408
>gi|325286330|ref|YP_004262120.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489]
gi|324321784|gb|ADY29249.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489]
Length = 366
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+I L + D I I LL +++ G + P
Sbjct: 313 EQQIHSFLQTEGKQLLDTIALACNIPVFKTSSTLLNMEMKGAIRPLPGKLF 363
>gi|313678964|ref|YP_004056703.1| DNA protecting protein dpra [Oceanithermus profundus DSM 14977]
gi|313151679|gb|ADR35530.1| DNA protecting protein DprA [Oceanithermus profundus DSM 14977]
Length = 341
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
PE + ++L + DD+ + A V +L +L+L+G + P
Sbjct: 275 APRPDRPEPEGAA-GALWEALRRRGEALPDDLALDLNLGAAEVLGLLTQLELSGHVRALP 333
Query: 82 EGKV 85
G+
Sbjct: 334 GGRY 337
>gi|328907959|gb|EGG27719.1| DNA protecting protein DprA [Propionibacterium sp. P08]
Length = 391
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 311 LAPEPERPAGRSLPTDILDATELAVHEALPAHGSCGLDELAALAGVPIAQCSAALTVLEQ 370
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 371 LGMAACCLDGTWSVTL 386
>gi|253579631|ref|ZP_04856900.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849132|gb|EES77093.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 305
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + L+ P + D I+ TG V L+EL L G +
Sbjct: 251 DLNMVYSCLDLRPKNPDYIVRKTGFSPAQVSNCLVELTLRGLIR 294
>gi|148545342|ref|YP_001265444.1| DNA protecting protein DprA [Pseudomonas putida F1]
gi|148509400|gb|ABQ76260.1| DNA protecting protein DprA [Pseudomonas putida F1]
Length = 365
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + H + V L EL+L GR+ + +
Sbjct: 303 LPPAVVDRFDHPLLALLHAAPQTSESLAHCSEQPLADVLAQLTELELEGRVSNEAGRWFA 362
Query: 87 LT 88
Sbjct: 363 RA 364
>gi|304404235|ref|ZP_07385897.1| DNA protecting protein DprA [Paenibacillus curdlanolyticus YK9]
gi|304347213|gb|EFM13045.1| DNA protecting protein DprA [Paenibacillus curdlanolyticus YK9]
Length = 370
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + + + L + P D++ TG+ ++ VL+ L + ++ ++
Sbjct: 312 ESLSEDERSVYEILLDQPCSADELHELTGMSLGHLHAVLINLCINRKVQQQHGATYTV 369
>gi|167767275|ref|ZP_02439328.1| hypothetical protein CLOSS21_01794 [Clostridium sp. SS2/1]
gi|317497303|ref|ZP_07955626.1| DNA protecting protein DprA [Lachnospiraceae bacterium 5_1_63FAA]
gi|167711250|gb|EDS21829.1| hypothetical protein CLOSS21_01794 [Clostridium sp. SS2/1]
gi|291559414|emb|CBL38214.1| DNA protecting protein DprA [butyrate-producing bacterium SSC/2]
gi|316895372|gb|EFV17531.1| DNA protecting protein DprA [Lachnospiraceae bacterium 5_1_63FAA]
Length = 360
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
H + R+ L+ P +ID+I+ + V L +L+ G + +
Sbjct: 296 PKHSAKSLAKAEKRVYDMLSLKPKYIDEILSTSQDSYEEVIQALFQLEAKGYIKQIHQNL 355
Query: 85 V 85
Sbjct: 356 Y 356
>gi|118617634|ref|YP_905966.1| hypothetical protein MUL_2062 [Mycobacterium ulcerans Agy99]
gi|118569744|gb|ABL04495.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length = 391
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVY 65
E + + T + ++ ++L + +D+I +G+ A V
Sbjct: 293 EIVELVGRIGELSLEQSRPTSVLDGLSQSESQVYEALPGRGAMSVDEIAVASGLVAEQVM 352
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L L++AG G+ L
Sbjct: 353 GRLAILEVAGLAERD-GGRWRL 373
>gi|310288071|ref|YP_003939330.1| transcription regulator ArsR [Bifidobacterium bifidum S17]
gi|309252008|gb|ADO53756.1| transcription regulator ArsR [Bifidobacterium bifidum S17]
Length = 201
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLE 70
+ N + + R+RI +++ P+ + I G A V L +
Sbjct: 12 TPPRRDNPATVTDTNRLKALSHPTRLRILTVMSDTEPVTVGQIAEQLGESAGTVSYHLKQ 71
Query: 71 LDLAGRLCHHP 81
L+ AG + P
Sbjct: 72 LEKAGFVTQTP 82
>gi|169630293|ref|YP_001703942.1| hypothetical protein MAB_3212c [Mycobacterium abscessus ATCC 19977]
gi|169242260|emb|CAM63288.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 378
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 7/73 (9%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ + + + R+ ++L + +++ +G+ V L
Sbjct: 295 LAGRLGEFTAAPDRPGSVIDGLGDDEKRVYEALPGRGSTTVRELVRESGLSVGRVQGALA 354
Query: 70 ELDLAGRLCHHPE 82
L+L +
Sbjct: 355 ILELEQLVIDVAG 367
>gi|260438814|ref|ZP_05792630.1| DNA processing protein DprA [Butyrivibrio crossotus DSM 2876]
gi|292808803|gb|EFF68008.1| DNA processing protein DprA [Butyrivibrio crossotus DSM 2876]
Length = 360
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 35 ERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + L + P ++ +++ +G+ V L L++ G +
Sbjct: 305 DEKMLYSLLLDFTPKSLETLVNDSGMSPAEVLRSLTCLEIKGIIR 349
>gi|331090295|ref|ZP_08339180.1| hypothetical protein HMPREF1025_02763 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330401581|gb|EGG81163.1| hypothetical protein HMPREF1025_02763 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 160
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 28/74 (37%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ F + + K + + + + L P +++I+ T +E V
Sbjct: 77 LLSPEMFLEELGLSGKKTEKEGKNKKMLETQEELLYSCLGLYPKSVEEILKETKLEVRQV 136
Query: 65 YLVLLELDLAGRLC 78
+L+ L+L G +
Sbjct: 137 MEILVSLELRGYIR 150
>gi|240129161|ref|ZP_04741822.1| DprA [Neisseria gonorrhoeae SK-93-1035]
gi|268687544|ref|ZP_06154406.1| DNA processing chain A [Neisseria gonorrhoeae SK-93-1035]
gi|268627828|gb|EEZ60228.1| DNA processing chain A [Neisseria gonorrhoeae SK-93-1035]
Length = 398
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 322 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPVHPDVLAGQLAMPAADLYAALLELEL 381
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 382 DGSVAAMPGGRYQR 395
>gi|288870966|ref|ZP_06115945.2| DNA processing protein DprA [Clostridium hathewayi DSM 13479]
gi|288865235|gb|EFC97533.1| DNA processing protein DprA [Clostridium hathewayi DSM 13479]
Length = 367
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ L+ P +++I+ +G+ LL+L+L G +
Sbjct: 314 EKMVYSCLDLQPKGLEEIVILSGLSVSECIGTLLDLELGGYVVQ 357
>gi|115379506|ref|ZP_01466600.1| topoisomerase [Stigmatella aurantiaca DW4/3-1]
gi|310822350|ref|YP_003954708.1| smf family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363484|gb|EAU62625.1| topoisomerase [Stigmatella aurantiaca DW4/3-1]
gi|309395422|gb|ADO72881.1| SMF family protein [Stigmatella aurantiaca DW4/3-1]
Length = 373
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E E + L+ VP ++++ + + L+EL+L+G L HP
Sbjct: 315 EVLSAEAKGAYEVLDRVPRTFEEVLAAVRLSPAALASALVELELSGLLIQHPGRLFER 372
>gi|291286767|ref|YP_003503583.1| DNA protecting protein DprA [Denitrovibrio acetiphilus DSM 12809]
gi|290883927|gb|ADD67627.1| DNA protecting protein DprA [Denitrovibrio acetiphilus DSM 12809]
Length = 379
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ T E+ E+ ++ L ++ D++ +G + V + L +++L G +
Sbjct: 298 DKQETSVLEFGSPEQAKLFDLLMRGTLNPDELSAMSGFDIESVVINLAQMELEGYVFREI 357
Query: 82 EGKVS 86
+GK
Sbjct: 358 DGKYR 362
>gi|146296271|ref|YP_001180042.1| DNA protecting protein DprA [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145409847|gb|ABP66851.1| DNA protecting protein DprA [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 380
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ S+ HI+++I T A V V+ L++ G++ +
Sbjct: 332 KLLDSVGEA--HIENLILLTNWSAGKVASVITSLEIKGKVVRERGNVIVR 379
>gi|108805606|ref|YP_645543.1| putative transcriptional regulator [Rubrobacter xylanophilus DSM
9941]
gi|108766849|gb|ABG05731.1| putative transcriptional regulator [Rubrobacter xylanophilus DSM
9941]
Length = 216
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R RI L +D++ G+ V L L+ G + G V
Sbjct: 12 STRGRIVVLLRRASRRVDELARELGLTDNAVRAHLAALERDGVVRQ--GGTVRRGRGAGK 69
Query: 94 P 94
P
Sbjct: 70 P 70
>gi|309378540|emb|CBX22812.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 397
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 25/72 (34%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + + I + P+H D + + A +Y LLEL+L G
Sbjct: 323 APPPSPEGKMPSEGAACGTDPGGILDKMGFDPVHPDVLAGQLAMPAADLYAALLELELDG 382
Query: 76 RLCHHPEGKVSL 87
+ P G+
Sbjct: 383 SVAAMPGGRYQR 394
>gi|319411401|emb|CBY91812.1| Smf protein (DNA processing chain A) [Neisseria meningitidis WUE
2594]
Length = 395
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEAAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|261391654|emb|CAX49102.1| Smf protein (DNA processing chain A) [Neisseria meningitidis 8013]
Length = 395
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|326204632|ref|ZP_08194488.1| DNA protecting protein DprA [Clostridium papyrosolvens DSM 2782]
gi|325985199|gb|EGD46039.1| DNA protecting protein DprA [Clostridium papyrosolvens DSM 2782]
Length = 374
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ ++I + + +ID+I+ + I A +L L++ G + +P +
Sbjct: 317 LTTDEIKILKVILMGAHNIDEILVRSNISAKDANSILFMLEMKGIIGQNPGKSFEV 372
>gi|182412005|ref|YP_001817071.1| DNA protecting protein DprA [Opitutus terrae PB90-1]
gi|177839219|gb|ACB73471.1| DNA protecting protein DprA [Opitutus terrae PB90-1]
Length = 382
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVV 64
+ + + ++ E I + + D II T + +P V
Sbjct: 298 LRPAAIPPKEGSADPESALGVTPSTALTPEEAAIWECFRGGAMLTPDAIIAQTRLGSPQV 357
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
L+ L+L + +G
Sbjct: 358 SAALMMLELKRLIAKRSDGAF 378
>gi|294101717|ref|YP_003553575.1| transcriptional regulator, IclR family [Aminobacterium
colombiense DSM 12261]
gi|293616697|gb|ADE56851.1| transcriptional regulator, IclR family [Aminobacterium
colombiense DSM 12261]
Length = 259
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 39 IKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG-KVSLTM 89
I ++L P+ I +I TG+ + ++L L+ G L P+ K L M
Sbjct: 17 IVEALGKEKTPLGIGEISRLTGLSKSTTHRLVLTLESRGWLKRLPDNDKYCLGM 70
>gi|297565482|ref|YP_003684454.1| DNA protecting protein DprA [Meiothermus silvanus DSM 9946]
gi|296849931|gb|ADH62946.1| DNA protecting protein DprA [Meiothermus silvanus DSM 9946]
Length = 338
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 25 ITHYPEYTQCERVRIKQ-SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ P + + + L DD+ + V VL L+L G P G
Sbjct: 274 PRNPPVALEGREASVYRTLLEMGETLPDDLALSLDLPLSEVLAVLSMLELKGHALSLPGG 333
Query: 84 KV 85
+
Sbjct: 334 RY 335
>gi|89889674|ref|ZP_01201185.1| Smf protein, DNA processing chain A [Flavobacteria bacterium BBFL7]
gi|89517947|gb|EAS20603.1| Smf protein, DNA processing chain A [Flavobacteria bacterium
BBFL7]
Length = 364
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 50 IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+D I + A V +L+ ++L G + P L
Sbjct: 326 LDIIAININKPAHQVASLLMSMELKGVIKPLPGKMFML 363
>gi|332289297|ref|YP_004420149.1| DNA protecting protein DprA [Gallibacterium anatis UMN179]
gi|330432193|gb|AEC17252.1| DNA protecting protein DprA [Gallibacterium anatis UMN179]
Length = 398
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 34 CERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + Q L + I D++ + LLEL++ G + G +
Sbjct: 342 PQHQALMQQLNSATAISPDELSTALNRPIDQILTDLLELEILGAVQQIQGGYIK 395
>gi|254494747|ref|ZP_05107918.1| DNA processing chain A [Neisseria gonorrhoeae 1291]
gi|226513787|gb|EEH63132.1| DNA processing chain A [Neisseria gonorrhoeae 1291]
Length = 395
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPVHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|59802185|ref|YP_208897.1| hypothetical protein NGO1865 [Neisseria gonorrhoeae FA 1090]
gi|293398230|ref|ZP_06642435.1| DNA processing protein [Neisseria gonorrhoeae F62]
gi|59719080|gb|AAW90485.1| putative DNA processing chain A [Neisseria gonorrhoeae FA 1090]
gi|291611493|gb|EFF40563.1| DNA processing protein [Neisseria gonorrhoeae F62]
Length = 395
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPVHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|331091326|ref|ZP_08340166.1| hypothetical protein HMPREF9477_00809 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404487|gb|EGG84031.1| hypothetical protein HMPREF9477_00809 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 361
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 10/81 (12%), Positives = 27/81 (33%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q+ + + E + L+ P +++ ++ T +E P +
Sbjct: 277 LSPQDLLDELRISTKEDVKKKLKSKISLETEENMVYSCLDLYPKNVNQLMMETKMEIPQL 336
Query: 65 YLVLLELDLAGRLCHHPEGKV 85
L+ L++ G + +
Sbjct: 337 INQLVSLEMQGYIREISKNYY 357
>gi|325138795|gb|EGC61347.1| putative DNA processing protein DprA [Neisseria meningitidis
ES14902]
Length = 395
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|240124486|ref|ZP_04737442.1| DprA [Neisseria gonorrhoeae PID332]
gi|317165352|gb|ADV08893.1| DprA [Neisseria gonorrhoeae TCDC-NG08107]
Length = 398
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 322 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 381
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 382 DGSVAAMPGGRYQR 395
>gi|240116726|ref|ZP_04730788.1| DprA [Neisseria gonorrhoeae PID18]
gi|268602397|ref|ZP_06136564.1| DNA processing chain A [Neisseria gonorrhoeae PID18]
gi|268586528|gb|EEZ51204.1| DNA processing chain A [Neisseria gonorrhoeae PID18]
Length = 398
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 322 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 381
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 382 DGSVAAMPGGRYQR 395
>gi|239997897|ref|ZP_04717821.1| DprA [Neisseria gonorrhoeae 35/02]
Length = 398
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 322 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 381
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 382 DGSVAAMPGGRYQR 395
>gi|197303737|ref|ZP_03168774.1| hypothetical protein RUMLAC_02466 [Ruminococcus lactaris ATCC
29176]
gi|197297257|gb|EDY31820.1| hypothetical protein RUMLAC_02466 [Ruminococcus lactaris ATCC
29176]
Length = 366
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ E + + P +++ ++ TG+E + VL+ L+L G + +
Sbjct: 310 LESEDELVYSCVGLYPKNVEHLVLETGLEIRKLMRVLVSLELQGYIKEVSKNYY 363
>gi|194099892|ref|YP_002003029.1| DprA [Neisseria gonorrhoeae NCCP11945]
gi|240015122|ref|ZP_04722035.1| DprA [Neisseria gonorrhoeae DGI18]
gi|240017572|ref|ZP_04724112.1| DprA [Neisseria gonorrhoeae FA6140]
gi|240113990|ref|ZP_04728480.1| DprA [Neisseria gonorrhoeae MS11]
gi|240122193|ref|ZP_04735155.1| DprA [Neisseria gonorrhoeae PID24-1]
gi|268600055|ref|ZP_06134222.1| DNA processing chain A [Neisseria gonorrhoeae MS11]
gi|193935182|gb|ACF31006.1| DprA [Neisseria gonorrhoeae NCCP11945]
gi|268584186|gb|EEZ48862.1| DNA processing chain A [Neisseria gonorrhoeae MS11]
Length = 398
Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 322 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 381
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 382 DGSVAAMPGGRYQR 395
>gi|240118948|ref|ZP_04733010.1| DprA [Neisseria gonorrhoeae PID1]
Length = 398
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 322 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 381
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 382 DGSVAAMPGGRYQR 395
>gi|313836671|gb|EFS74385.1| DNA protecting protein DprA [Propionibacterium acnes HL037PA2]
gi|314928178|gb|EFS92009.1| DNA protecting protein DprA [Propionibacterium acnes HL044PA1]
gi|314972177|gb|EFT16274.1| DNA protecting protein DprA [Propionibacterium acnes HL037PA3]
Length = 377
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDATELAVHEALPAHGSCGLDELAALAGVPIAQCSAALTVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|325262840|ref|ZP_08129576.1| DNA processing protein DprA [Clostridium sp. D5]
gi|324031934|gb|EGB93213.1| DNA processing protein DprA [Clostridium sp. D5]
Length = 360
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + L P ++ + T + A V L+ L+L G + +
Sbjct: 303 LESGENMVYSRLGLYPKNLSQLTEETMLPANEVLERLVSLELKGYIREVSKNYY 356
>gi|260439513|ref|ZP_05793329.1| DprA [Neisseria gonorrhoeae DGI2]
gi|291042750|ref|ZP_06568491.1| DNA protecting protein DprA [Neisseria gonorrhoeae DGI2]
gi|291013184|gb|EFE05150.1| DNA protecting protein DprA [Neisseria gonorrhoeae DGI2]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|87124524|ref|ZP_01080373.1| Bacterial regulatory proteins, ArsR family protein [Synechococcus
sp. RS9917]
gi|86168096|gb|EAQ69354.1| Bacterial regulatory proteins, ArsR family protein [Synechococcus
sp. RS9917]
Length = 101
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R+ + ++L + PI++ ++ TG+ +V L L +AG + PEG
Sbjct: 13 EPNRLAVLEALRDGPINVTAVVEKTGLSQALVSKHLKLLTIAGVVERRPEG 63
>gi|325197405|gb|ADY92861.1| putative DNA processing protein DprA [Neisseria meningitidis G2136]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|240081714|ref|ZP_04726257.1| DprA [Neisseria gonorrhoeae FA19]
gi|268597812|ref|ZP_06131979.1| DNA processing chain A [Neisseria gonorrhoeae FA19]
gi|268604659|ref|ZP_06138826.1| DNA processing chain A [Neisseria gonorrhoeae PID1]
gi|268551600|gb|EEZ46619.1| DNA processing chain A [Neisseria gonorrhoeae FA19]
gi|268588790|gb|EEZ53466.1| DNA processing chain A [Neisseria gonorrhoeae PID1]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|325203235|gb|ADY98688.1| putative DNA processing protein DprA [Neisseria meningitidis
M01-240355]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|183981827|ref|YP_001850118.1| hypothetical protein MMAR_1814 [Mycobacterium marinum M]
gi|183175153|gb|ACC40263.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
Length = 391
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVY 65
E + + T + ++ ++L + +D+I +G+ A V
Sbjct: 293 EIVELVGRIGELSLEQSRPTSVLDGLSQSESQVYEALPGRGAMSVDEIAVASGLVAEQVM 352
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L L++AG G+ L
Sbjct: 353 GRLAILEVAGLAERD-GGRWRL 373
>gi|87307031|ref|ZP_01089177.1| DNA processing chain A [Blastopirellula marina DSM 3645]
gi|87290404|gb|EAQ82292.1| DNA processing chain A [Blastopirellula marina DSM 3645]
Length = 407
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCER--VRIKQSLNN-VPIHIDDIIHHTGIEAPVVY 65
+ T++ H P Q I Q+L + P +D ++ +G+ V
Sbjct: 324 EELGPLTRPAKTEDGKTIHAPIELQLNEMETAIMQALADGQPTDMDSVVSRSGLPIQNVL 383
Query: 66 LVLLELDLAGRLCHHPEGKVSLTM 89
+ L++ + V +
Sbjct: 384 STICVLEMRRLVRRLSGVSVQRAV 407
>gi|329894844|ref|ZP_08270644.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [gamma proteobacterium IMCC3088]
gi|328922738|gb|EGG30072.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [gamma proteobacterium IMCC3088]
Length = 373
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 24/66 (36%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ T + R+ + + + P+ D+ V LLEL+LA +
Sbjct: 308 PEDQTVLTAVLSPDCKRLLRLMGDTPVSSVDLSARVKKPVTWVQEHLLELELANCITVSG 367
Query: 82 EGKVSL 87
G V L
Sbjct: 368 FGYVRL 373
>gi|268683117|ref|ZP_06149979.1| DNA processing chain A [Neisseria gonorrhoeae PID332]
gi|268623401|gb|EEZ55801.1| DNA processing chain A [Neisseria gonorrhoeae PID332]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|254672820|emb|CBA06971.1| DNA processing chain A [Neisseria meningitidis alpha275]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|268593749|ref|ZP_06127916.1| DNA processing chain A [Neisseria gonorrhoeae 35/02]
gi|268547138|gb|EEZ42556.1| DNA processing chain A [Neisseria gonorrhoeae 35/02]
Length = 395
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|291531139|emb|CBK96724.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Eubacterium siraeum 70/3]
Length = 500
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 1 MVHPQIEQN-----FFSSQSDTNH------TKNINITHYPEYTQCERVRIKQSL-NNVPI 48
++ P E + +DT + + I + N+ +
Sbjct: 397 IIAPIAETDNTDVSEAEPVTDTEEKQSGQIAEAVENASGAAENASGAAEILGIIANSDGV 456
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
D ++ + + +L +L+++G + G ++
Sbjct: 457 TFDTLLSACSLSFGELSEILADLEISGAVSCGAGGIYTV 495
>gi|190571736|ref|YP_001976094.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019224|ref|ZP_03335031.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190358008|emb|CAQ55476.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995333|gb|EEB55974.1| DNA processing chain A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 361
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I +N+VP+ ID++I +G+ A + + LLEL+L ++ P K+SL
Sbjct: 311 IVDHINSVPVDIDELILASGLSANIALMALLELELENKIERSPGNKISL 359
>gi|254474217|ref|ZP_05087608.1| DNA processing chain A [Pseudovibrio sp. JE062]
gi|211956747|gb|EEA91956.1| DNA processing chain A [Pseudovibrio sp. JE062]
Length = 397
Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKN-----INITHYPEYT----QCERVRIKQSLNNVPIHID 51
++ P+I + Q T N T+ P + +R+ + +L+ PI D
Sbjct: 296 IMEPKISMSLPLHQGIEEPTSNWPKLDSPDTNSPSPPLNANEQDRLAVIDALSETPIDQD 355
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+++ TG+ + L+LLE++LAGRL H K+S+
Sbjct: 356 ELLRFTGVSLQTLQLILLEIELAGRLERHKPNKLSM 391
>gi|308388334|gb|ADO30654.1| SMF-family protein [Neisseria meningitidis alpha710]
gi|325131151|gb|EGC53872.1| putative DNA processing protein DprA [Neisseria meningitidis
OX99.30304]
gi|325137175|gb|EGC59770.1| putative DNA processing protein DprA [Neisseria meningitidis M0579]
gi|325203049|gb|ADY98503.1| putative DNA processing protein DprA [Neisseria meningitidis
M01-240149]
gi|325207153|gb|ADZ02605.1| putative DNA processing protein DprA [Neisseria meningitidis
NZ-05/33]
Length = 395
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|209521901|ref|ZP_03270572.1| DEAD/H associated domain protein [Burkholderia sp. H160]
gi|209497659|gb|EDZ97843.1| DEAD/H associated domain protein [Burkholderia sp. H160]
Length = 1313
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++P I +N ++ + + R R+ P+ +D I G+ A
Sbjct: 1019 LYPDIPRNRYTPPLSAPKGYTDSWSADDALVDVLRARLT---GFGPLTVDAIARPLGLPA 1075
Query: 62 PVVYLVLLELDLAGRLCH 79
V L+ L+ G L
Sbjct: 1076 DRVEPALIRLEAEGYLLR 1093
>gi|317401308|gb|EFV81948.1| smf protein [Achromobacter xylosoxidans C54]
Length = 158
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 29/79 (36%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + P + ++L P+H+D + G++ + L
Sbjct: 78 DELGGGPQPGTRRPPEPADDPGDADNPTHPVLEALGFDPLHLDALQARCGLDTATLQAQL 137
Query: 69 LELDLAGRLCHHPEGKVSL 87
LEL+LA R+ +G+
Sbjct: 138 LELELAARVARLDDGRFQR 156
>gi|217967909|ref|YP_002353415.1| DNA protecting protein DprA [Dictyoglomus turgidum DSM 6724]
gi|217337008|gb|ACK42801.1| DNA protecting protein DprA [Dictyoglomus turgidum DSM 6724]
Length = 364
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + L PI I+D++ + I+ + +++ L G + +P + +
Sbjct: 300 ELTEEEKLVLNFLGLEPIFIEDLMKNLNIDLSRLMFIIISLQGKGFVEEYPGLRYA 355
>gi|311064945|ref|YP_003971671.1| transcriptional regulator [Bifidobacterium bifidum PRL2010]
gi|310867265|gb|ADP36634.1| Putative transcriptional regulator [Bifidobacterium bifidum
PRL2010]
Length = 201
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLE 70
+ N + + R+RI +++ P+ + I G A V L +
Sbjct: 12 TPPRRDNPATVTDTNRLKALSHPTRLRILTVMSDTKPVTVGQIAEQLGESAGTVSYHLKQ 71
Query: 71 LDLAGRLCHHP 81
L+ AG + P
Sbjct: 72 LEKAGFVTQTP 82
>gi|224283664|ref|ZP_03646986.1| transcription regulator ArsR [Bifidobacterium bifidum NCIMB
41171]
gi|313140820|ref|ZP_07803013.1| ArsR-family transcriptional regulator [Bifidobacterium bifidum
NCIMB 41171]
gi|313133330|gb|EFR50947.1| ArsR-family transcriptional regulator [Bifidobacterium bifidum
NCIMB 41171]
Length = 201
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLE 70
+ N + + R+RI +++ P+ + I G A V L +
Sbjct: 12 TPPRRDNPATVTDTNRLKALSHPTRLRILTVMSDTEPVTVGQIAEQLGESAGTVSYHLKQ 71
Query: 71 LDLAGRLCHHP 81
L+ AG + P
Sbjct: 72 LEKAGFVTQTP 82
>gi|282856249|ref|ZP_06265532.1| DNA protecting protein DprA [Pyramidobacter piscolens W5455]
gi|282586008|gb|EFB91293.1| DNA protecting protein DprA [Pyramidobacter piscolens W5455]
Length = 355
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 28 YPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
P + R+ L++ + +D I TGI A + ++ EL + + G+
Sbjct: 292 APLELGDDERRVLDCLSDQGDLTLDQISKRTGISAVELMRLISELQVQSLIYTSGGGR 349
>gi|257485582|ref|ZP_05639623.1| DNA processing protein DprA [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|330985721|gb|EGH83824.1| DNA processing protein DprA [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 372
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ P + + +G P V L EL+L GR+ +
Sbjct: 317 PCDHPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISCEAGRWFARA 371
>gi|291296459|ref|YP_003507857.1| transcriptional regulator TrmB [Meiothermus ruber DSM 1279]
gi|290471418|gb|ADD28837.1| transcriptional regulator, TrmB [Meiothermus ruber DSM 1279]
Length = 337
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 32 TQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ ++L +P + DD+ TG+ V VL+ L+L G +
Sbjct: 281 LEGSEAKVYRALLELPEALPDDLAQSTGLSTGEVLSVLMMLELKGLVQSSAGRY 334
>gi|71736684|ref|YP_272337.1| DNA processing protein DprA [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71557237|gb|AAZ36448.1| DNA processing protein DprA [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 372
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ P + + +G P V L EL+L GR+ +
Sbjct: 317 PCDHPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISCEAGRWFARA 371
>gi|312897996|ref|ZP_07757405.1| DNA protecting protein DprA [Megasphaera micronuciformis F0359]
gi|310620921|gb|EFQ04472.1| DNA protecting protein DprA [Megasphaera micronuciformis F0359]
Length = 367
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAP 62
P + RI + + + + +++ T +
Sbjct: 281 PLLSGKELLETYGWQEEVKKRGRKALPPLSKGAGRIYKLMQGDRSVSYEELCAETALSPA 340
Query: 63 VVYLVLLELDLAGRL 77
+ L EL++AG +
Sbjct: 341 CLASSLTELEMAGLI 355
>gi|88807796|ref|ZP_01123307.1| SMF family protein [Synechococcus sp. WH 7805]
gi|88787835|gb|EAR18991.1| SMF family protein [Synechococcus sp. WH 7805]
Length = 333
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ F + P + R+ Q +N+ ++ + + +
Sbjct: 251 LVDLGAFIDALGPGPVPCQDSMVSPTGLDPSKERLLQQVNDGAT-LEQMARCLQEDPQHI 309
Query: 65 YLVLLELDLAGRLCHHPE 82
L++L+LAG + P
Sbjct: 310 AQTLMQLELAGVVMPMPG 327
>gi|254361451|ref|ZP_04977591.1| SMF family Rossmann fold nucleotide-binding protein [Mannheimia
haemolytica PHL213]
gi|153092961|gb|EDN73987.1| SMF family Rossmann fold nucleotide-binding protein [Mannheimia
haemolytica PHL213]
Length = 382
Score = 42.9 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 4 PQIEQNFFS-SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P +++ + S S + + +I Q ++ P+ IDD+ T +
Sbjct: 295 PLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQHISLEPMAIDDLAKVTELTIE 354
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
++ + LL L+LAG + G V
Sbjct: 355 ILLVELLGLELAGVIKQVSGGYV 377
>gi|297566316|ref|YP_003685288.1| IclR family transcriptional regulator [Meiothermus silvanus DSM
9946]
gi|296850765|gb|ADH63780.1| transcriptional regulator, IclR family [Meiothermus silvanus DSM
9946]
Length = 233
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY---LVLLELDLAGR 76
T ++ + P ++ L+ P+ + TG+ VY LLE AG
Sbjct: 160 TDRMSSSTQPGKPDERVEQLLAVLSGQPLGPSALARRTGLPKTTVYRLTARLLE---AGL 216
Query: 77 LCHHPEGKVS 86
+ P G V
Sbjct: 217 IAQTPGGYVR 226
>gi|212224105|ref|YP_002307341.1| hypothetical protein TON_0956 [Thermococcus onnurineus NA1]
gi|212009062|gb|ACJ16444.1| Hypothetical protein TON_0956 [Thermococcus onnurineus NA1]
Length = 315
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
E+ + + +I L P+ ++ G+ V ++L E++ G +
Sbjct: 245 ERKREKEMEFLRGDEEKIMAILREGPVLQSELAEKLGVSKAKVSIILREMEEKGLITRVK 304
Query: 82 EGK 84
EG+
Sbjct: 305 EGR 307
>gi|167750872|ref|ZP_02422999.1| hypothetical protein EUBSIR_01856 [Eubacterium siraeum DSM 15702]
gi|167656051|gb|EDS00181.1| hypothetical protein EUBSIR_01856 [Eubacterium siraeum DSM 15702]
Length = 500
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 1 MVHPQIEQN-----FFSSQSDTNHTKNINITHYPEYTQCE------RVRIKQSL-NNVPI 48
++ P E + +D ++ I E I + N+ +
Sbjct: 397 IIAPIAETDNTDVSEAEPVTDKEEKQSGQIAEAAENASGAVGNASGAAEILGIIANSDGV 456
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+D ++ + + +L +L+++G + G ++
Sbjct: 457 TLDALLSACSLSFGELSEILADLEISGTISCGAGGIYTV 495
>gi|166031219|ref|ZP_02234048.1| hypothetical protein DORFOR_00906 [Dorea formicigenerans ATCC
27755]
gi|166029066|gb|EDR47823.1| hypothetical protein DORFOR_00906 [Dorea formicigenerans ATCC
27755]
Length = 364
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 29/83 (34%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ F + + + + + L+ P ++ +I TG++A ++
Sbjct: 277 ISPEEFLKELQIEVSENSTELLKNEKMLETTEKVVYSCLDLFPRNVSEIQVKTGLDARIL 336
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L+ L++ G + +
Sbjct: 337 METLMTLEMEGYIKETAKNYYVR 359
>gi|28867415|ref|NP_790034.1| DNA processing protein DprA [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28850649|gb|AAO53729.1| DNA processing protein DprA, putative [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 394
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ P + L+ P + + +G P V L EL+L GR+
Sbjct: 328 PSADSSNTEPAPCD---HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISC 384
Query: 80 HPEGKVS 86
+
Sbjct: 385 EAGRWFA 391
>gi|218885875|ref|YP_002435196.1| DNA protecting protein DprA [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|218756829|gb|ACL07728.1| DNA protecting protein DprA [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 553
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 37 VRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I L+ P H+DDI + A V L+ L++ G + P +
Sbjct: 501 DAILTFLHGRPGAHVDDICRALSMGAADVSCRLVLLEVKGGVRRLPGMRYER 552
>gi|229815418|ref|ZP_04445750.1| hypothetical protein COLINT_02466 [Collinsella intestinalis DSM
13280]
gi|229808951|gb|EEP44721.1| hypothetical protein COLINT_02466 [Collinsella intestinalis DSM
13280]
Length = 308
Score = 42.5 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 29/67 (43%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ + R+ L P+ +DD+ G++ ++ +L++ G +
Sbjct: 228 SRPDARGLDGLDTNGRRMVDMLLANPMRVDDLASALGVDPLACLQLIGDLEVHGVVERLV 287
Query: 82 EGKVSLT 88
+G+++L+
Sbjct: 288 DGRLALS 294
>gi|238028946|ref|YP_002913177.1| DNA processing protein DprA [Burkholderia glumae BGR1]
gi|237878140|gb|ACR30473.1| DNA processing protein DprA, putative [Burkholderia glumae BGR1]
Length = 445
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 33/85 (38%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
N + + T E E + + +L + P+ D + G+ A + +L
Sbjct: 333 NEAAQSPGRDGTGAAPDCAGVESLPPEALALLDALGHGPVPADLLASRAGLAADTLPHLL 392
Query: 69 LELDLAGRLCHHPEGKVSLTMHLPS 93
L L+LAGR+ P + PS
Sbjct: 393 LRLELAGRVASLPGDRYQRLDPPPS 417
>gi|15676044|ref|NP_273174.1| DNA processing chain A [Neisseria meningitidis MC58]
gi|7225332|gb|AAF40575.1| DNA processing chain A [Neisseria meningitidis MC58]
gi|316985962|gb|EFV64901.1| DNA protecting protein DprA [Neisseria meningitidis H44/76]
gi|325141261|gb|EGC63760.1| putative DNA processing protein DprA [Neisseria meningitidis CU385]
gi|325199330|gb|ADY94785.1| putative DNA processing protein DprA [Neisseria meningitidis
H44/76]
Length = 397
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + SD + + I + P+H D + + A
Sbjct: 311 PEKRITAVQTASDQLSLPEGKMPSEKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAAD 370
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+Y LLEL+L G + P G+
Sbjct: 371 LYAALLELELDGSVAAMPGGRYQR 394
>gi|206900964|ref|YP_002251236.1| DNA processing protein DprA [Dictyoglomus thermophilum H-6-12]
gi|206740067|gb|ACI19125.1| DNA processing protein DprA [Dictyoglomus thermophilum H-6-12]
Length = 364
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E + LN+ PI I+D++ + I+ + +++ L G + +P + +
Sbjct: 303 PEEKFVLSFLNSEPIFIEDLMKNLNIDLSTLMFIIISLQGKGLVEEYPGLRYAR 356
>gi|88802025|ref|ZP_01117553.1| Smf protein DNA processing chain A [Polaribacter irgensii 23-P]
gi|88782683|gb|EAR13860.1| Smf protein DNA processing chain A [Polaribacter irgensii 23-P]
Length = 367
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L++ I D I I + +LL+++L G P L
Sbjct: 310 LNENEQKIHDFLHDKGKQILDVISLECNIPMYKLASILLQMELKGVSKPLPGKMFEL 366
>gi|303248293|ref|ZP_07334555.1| DNA protecting protein DprA [Desulfovibrio fructosovorans JJ]
gi|302490318|gb|EFL50230.1| DNA protecting protein DprA [Desulfovibrio fructosovorans JJ]
Length = 420
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 14/102 (13%)
Query: 3 HPQIEQNFFSSQSDTNHTKNIN-------------ITHYPEYTQCERVRIKQSLNNVP-I 48
P + + S + P I L +
Sbjct: 318 APPVAPKRAPAASKRAPASSNKPSVPPAPPVAPCAPVAPPSDLSPLEAAIVGLLADGSKR 377
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
HID + + + L+ L++ G + P + +
Sbjct: 378 HIDALARTLDAASGALSQALVLLEMKGLVRKWPGMYYTREVE 419
>gi|187250577|ref|YP_001875059.1| DNA protecting protein DprA [Elusimicrobium minutum Pei191]
gi|186970737|gb|ACC97722.1| DNA protecting protein DprA (DNA processing chain A)
[Elusimicrobium minutum Pei191]
Length = 372
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + + IDDI+ + P VL E+++ G L
Sbjct: 319 EKQFLEVIGPGEHTIDDIVEALATDVPSAAAVLFEMEIKGVLMCKDGKY 367
>gi|58696725|ref|ZP_00372270.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
simulans]
gi|225630004|ref|YP_002726795.1| DNA processing chain A [Wolbachia sp. wRi]
gi|58537093|gb|EAL60213.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
simulans]
gi|225591985|gb|ACN95004.1| DNA processing chain A [Wolbachia sp. wRi]
Length = 362
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ + Q + ++ + E Q + I +N+VP+ ID++I +G+ +
Sbjct: 279 VRFSLPPQQKNLFDVEHYAVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIAL 338
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
+ LLEL+L ++ P K+SL
Sbjct: 339 MALLELELENKIERSPGNKISL 360
>gi|302060149|ref|ZP_07251690.1| DNA processing protein DprA, putative [Pseudomonas syringae pv.
tomato K40]
Length = 372
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ P + L+ P + + +G P V L EL+L GR+
Sbjct: 306 PSADSSNTEPAPCD---HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISC 362
Query: 80 HPEGKVS 86
+
Sbjct: 363 EAGRWFA 369
>gi|253573510|ref|ZP_04850853.1| DNA protecting protein DprA [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251847038|gb|EES75043.1| DNA protecting protein DprA [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 373
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E RI L DD++ TG + +++ VLL L + P L
Sbjct: 317 LTDEERRIYHMLEQGITSFDDLLVQTGWDFGLLHSVLLSLIMKKTAVQLPGSVYQL 372
>gi|213968423|ref|ZP_03396566.1| DNA processing protein DprA [Pseudomonas syringae pv. tomato T1]
gi|301384289|ref|ZP_07232707.1| DNA processing protein DprA, putative [Pseudomonas syringae pv.
tomato Max13]
gi|302130422|ref|ZP_07256412.1| DNA processing protein DprA, putative [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213926711|gb|EEB60263.1| DNA processing protein DprA [Pseudomonas syringae pv. tomato T1]
gi|331017685|gb|EGH97741.1| DNA processing protein DprA, putative [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 371
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ P + L+ P + + +G P V L EL+L GR+
Sbjct: 305 PSADSSNTEPAPCD---HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISC 361
Query: 80 HPEGKVS 86
+
Sbjct: 362 EAGRWFA 368
>gi|291549900|emb|CBL26162.1| DNA protecting protein DprA [Ruminococcus torques L2-14]
Length = 370
Score = 42.5 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + + P ++D I + +E + +L+ L+L G +
Sbjct: 313 LESTDDLVYSCVGLYPKNVDQIAQESRVEIRKLMSILVTLELQGYIR 359
>gi|152997125|ref|YP_001341960.1| DeoR family transcriptional regulator [Marinomonas sp. MWYL1]
gi|150838049|gb|ABR72025.1| transcriptional regulator, DeoR family [Marinomonas sp. MWYL1]
Length = 252
Score = 42.1 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+D+++ + V L++L+ G + G
Sbjct: 20 TTVDELVQTLNVSPATVRRDLIDLENQGVVRRTHGG 55
>gi|58698108|ref|ZP_00373031.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535354|gb|EAL59430.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 346
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
+ + Q + ++ + E Q + I +N+VP+ ID++I +G+ +
Sbjct: 263 VRFSLPPQQKNLFDVEHYAVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIAL 322
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
+ LLEL+L ++ P K+SL
Sbjct: 323 MALLELELENKIERSPGNKISL 344
>gi|284051638|ref|ZP_06381848.1| DNA protecting protein DprA [Arthrospira platensis str. Paraca]
Length = 377
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 25/80 (31%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + +I ++ + P D I+ GI+A V
Sbjct: 297 PQLDTPTQLPLWQPQTKPLPESPNLDPDLAKILNAIASQPTPFDLIVEQCGIDAGTVSSQ 356
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LL+L+L + P +
Sbjct: 357 LLQLELLELVTQLPGMRYQR 376
>gi|56416598|ref|YP_153672.1| DNA processing protein, chain A [Anaplasma marginale str. St.
Maries]
gi|222474964|ref|YP_002563379.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Florida]
gi|56387830|gb|AAV86417.1| DNA processing protein, chain A [Anaplasma marginale str. St.
Maries]
gi|222419100|gb|ACM49123.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Florida]
Length = 377
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++P + + H ++ + R I Q L+ P I+D+ T I
Sbjct: 291 LNPSARP---IAANSLRHAARQDVATDGAGSAAIRRAILQQLSVSPTDIEDLAACTKIGT 347
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ L+EL+L ++ P + +L++
Sbjct: 348 STLLAELIELELLRKVHRFPGNRFALSLEN 377
>gi|291571641|dbj|BAI93913.1| DNA processing protein [Arthrospira platensis NIES-39]
Length = 377
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 25/80 (31%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + +I ++ + P D I+ GI+A V
Sbjct: 297 PQLDTPTQLPLWQPQTKPLPESPNLDPDLAKILNAIASQPTPFDLIVEQCGIDAGTVSSQ 356
Query: 68 LLELDLAGRLCHHPEGKVSL 87
LL+L+L + P +
Sbjct: 357 LLQLELLELVTQLPGMRYQR 376
>gi|295839594|ref|ZP_06826527.1| DeoR family transcriptional regulator [Streptomyces sp. SPB74]
gi|197696826|gb|EDY43759.1| DeoR family transcriptional regulator [Streptomyces sp. SPB74]
Length = 349
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 23/83 (27%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P+ + P + +R ++ + + ++ + G+
Sbjct: 71 SPRARSRQPGASRADAPRSGTRGAERPGAPERQREIVRAAREGGSVEVNALAERLGVAKE 130
Query: 63 VVYLVLLELDLAGRLCHHPEGKV 85
V L L+ G + G
Sbjct: 131 TVRRDLQALEDHGLVRRTHGGAY 153
>gi|210633134|ref|ZP_03297701.1| hypothetical protein COLSTE_01614 [Collinsella stercoris DSM 13279]
gi|210159288|gb|EEA90259.1| hypothetical protein COLSTE_01614 [Collinsella stercoris DSM 13279]
Length = 309
Score = 42.1 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ L P+ +++ H ++A +L L++AG + +G+V
Sbjct: 233 APGLSGLDGAERKAMDMLVANPLRPEELAAHLRLDAIACLTMLSSLEVAGMVTRLSDGRV 292
Query: 86 S 86
S
Sbjct: 293 S 293
>gi|42520001|ref|NP_965916.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409738|gb|AAS13850.1| DNA processing chain A [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 362
Score = 42.1 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
I + Q + ++ + E Q + I +N+VP+ ID++I +G+ +
Sbjct: 279 IRFSLPPQQKNLFDVEHHFVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIAL 338
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
+ LLEL+L ++ P K+SL
Sbjct: 339 MALLELELENKIERSPGNKISL 360
>gi|225677140|ref|ZP_03788139.1| DNA processing chain A [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225590807|gb|EEH12035.1| DNA processing chain A [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 362
Score = 42.1 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
I + Q + ++ + E Q + I +N+VP+ ID++I +G+ +
Sbjct: 279 IRFSLPPQQKNLFDVEHHFVNQKQEKLQQAKSVIVDHINSVPVDIDELILASGLSTNIAL 338
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
+ LLEL+L ++ P K+SL
Sbjct: 339 MALLELELENKIERSPGNKISL 360
>gi|167725507|ref|ZP_02408743.1| DNA protecting protein DprA [Burkholderia pseudomallei DM98]
Length = 236
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 164 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 214
>gi|325129152|gb|EGC52000.1| putative DNA processing protein DprA [Neisseria meningitidis N1568]
Length = 397
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + SD + + I + P+H D + + A
Sbjct: 311 PEKRITAVQTASDQLSLPEGKMPSEKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAAD 370
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+Y LLEL+L G + P G+
Sbjct: 371 LYAALLELELDGSVAAMPGGRYQR 394
>gi|187734950|ref|YP_001877062.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835]
gi|187425002|gb|ACD04281.1| DNA protecting protein DprA [Akkermansia muciniphila ATCC BAA-835]
Length = 375
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQS--LNNVPIHIDDIIHHTGIEA 61
P+ FS S P E I + L ID + G A
Sbjct: 294 PEQGLPLFSPCSPAG-------ASTPPLPTLEEKEILHAIRLGFN--TIDTLCTSLGKAA 344
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ +L ++ +AG++ G S+
Sbjct: 345 HTITPLLAKMQIAGQITPDAGGYFSINGRE 374
>gi|255002940|ref|ZP_05277904.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Puerto Rico]
gi|255004065|ref|ZP_05278866.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Virginia]
Length = 354
Score = 42.1 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++P + + H ++ + R I Q L+ P I+D+ T I
Sbjct: 268 LNPSARP---IAANSLRHAARQDVATDGAGSAAIRRAILQQLSVSPTDIEDLAACTKIGT 324
Query: 62 PVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ L+EL+L ++ P + +L++
Sbjct: 325 STLLAELIELELLRKVHRFPGNRFALSLEN 354
>gi|319953068|ref|YP_004164335.1| DNA protecting protein dpra [Cellulophaga algicola DSM 14237]
gi|319421728|gb|ADV48837.1| DNA protecting protein DprA [Cellulophaga algicola DSM 14237]
Length = 367
Score = 42.1 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 32 TQCERVRIKQ-SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I L +D I I LL +++ G + P
Sbjct: 310 LDDTEQAIHSYLLKEGKQGLDLIALTCNIPIFKASSSLLNMEMKGVIRPLPGKLF 364
>gi|330876382|gb|EGH10531.1| DNA processing protein DprA [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
gi|330965120|gb|EGH65380.1| DNA processing protein DprA [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 371
Score = 42.1 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + L+ P + + +G P V L EL+L GR+ +
Sbjct: 313 EPAPCD---HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDGRISCEAGRWFA 368
>gi|121633994|ref|YP_974239.1| SMF-family protein [Neisseria meningitidis FAM18]
gi|120865700|emb|CAM09427.1| SMF-family protein [Neisseria meningitidis FAM18]
Length = 397
Score = 41.7 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + SD + + I + P+H D + + A
Sbjct: 311 PEKRITAVQTASDQLSLPEGKMPSEKTENRPVGGSILDRMGFDPVHPDVLAGQLAMPAAD 370
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+Y LLEL+L G + P G+
Sbjct: 371 LYAALLELELDGSVAAMPGGRYQR 394
>gi|262281297|ref|ZP_06059078.1| DNA protecting protein DprA [Acinetobacter calcoaceticus RUH2202]
gi|262257123|gb|EEY75860.1| DNA protecting protein DprA [Acinetobacter calcoaceticus RUH2202]
Length = 376
Score = 41.7 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCER-VRIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + E V++ QSL+ V ID +I H
Sbjct: 287 HPEQIIEDLALPTQWQSQQQSQSETAETGAPEIPEHLVKLYQSLDWVGQDIDQLIVHHSQ 346
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 347 PVAELTSSLMELELLGLCMQQSG 369
>gi|33866509|ref|NP_898068.1| Smf family DNA processing protein [Synechococcus sp. WH 8102]
gi|33633287|emb|CAE08492.1| putative DNA processing protein (Smf family) [Synechococcus sp. WH
8102]
Length = 354
Score = 41.7 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P + N T + ++L I+ + + A
Sbjct: 277 APLLSPKELVEHLGPGPFHRANATAP---------ALVKALGAGA-SIEQLQQTLKLPAG 326
Query: 63 VVYLVLLELDLAGRLCHHPE 82
+ LLEL+LAG++
Sbjct: 327 RLASDLLELELAGQVVCESG 346
>gi|251797454|ref|YP_003012185.1| DNA protecting protein DprA [Paenibacillus sp. JDR-2]
gi|247545080|gb|ACT02099.1| DNA protecting protein DprA [Paenibacillus sp. JDR-2]
Length = 371
Score = 41.7 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
TK + E +I L + P+ I+++ T I + +L+ L + +
Sbjct: 300 AALTKPKPASAVAASMSAEEQKIIDLLRDRPLTINELHQLTMIPFGHLSALLINLCIKRK 359
Query: 77 LCHHPE 82
+ P
Sbjct: 360 IEQQPG 365
>gi|311109640|ref|YP_003982493.1| DeoR-like helix-turn-helix domain-containing protein 2
[Achromobacter xylosoxidans A8]
gi|310764329|gb|ADP19778.1| DeoR-like helix-turn-helix domain protein 2 [Achromobacter
xylosoxidans A8]
Length = 253
Score = 41.7 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L++ + D I+ G+ V LLEL+ G L G V + P
Sbjct: 7 YQRIRALLSSLQQVSTDRIVGELGVSRETVRRDLLELEAMGELRRVHGGAVPVHSEPP 64
>gi|289426516|ref|ZP_06428259.1| DNA protecting protein DprA [Propionibacterium acnes SK187]
gi|289153244|gb|EFD01962.1| DNA protecting protein DprA [Propionibacterium acnes SK187]
Length = 391
Score = 41.7 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 311 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 370
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 371 LGMAACCLDGTWSVTL 386
>gi|269795658|ref|YP_003315113.1| DNA protecting protein DprA [Sanguibacter keddieii DSM 10542]
gi|269097843|gb|ACZ22279.1| DNA protecting protein DprA [Sanguibacter keddieii DSM 10542]
Length = 399
Score = 41.7 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ T ++ T + +L P+ +D ++ +G+ + L L++
Sbjct: 320 AATGALRDDADTRETDGLDAPGKAAYDALPLRRPVPVDALVRSSGLAPHELMAALGVLEV 379
Query: 74 AGRLCHHPEG 83
G G
Sbjct: 380 RGLAVRSTGG 389
>gi|94967687|ref|YP_589735.1| DeoR family transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94549737|gb|ABF39661.1| transcriptional regulator, DeoR family [Candidatus Koribacter
versatilis Ellin345]
Length = 284
Score = 41.7 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 13 SQSDTNHTKNINITHYPE-YTQCERVR-----IKQSLNNVP-IHIDDIIHHTGIEAPVVY 65
S ++N+ ++PE ++ + I +L + +D + + +
Sbjct: 4 PNSRQGSGSSLNVPNHPEIPGTQDKQQVRFTTILTALQQTGRVSVDTLSEQLDVSVVTIR 63
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
L L+ G L G VS+
Sbjct: 64 RDLDALEQKGLLRRTHGGAVSI 85
>gi|94497602|ref|ZP_01304171.1| DNA processing chain A [Sphingomonas sp. SKA58]
gi|94423019|gb|EAT08051.1| DNA processing chain A [Sphingomonas sp. SKA58]
Length = 360
Score = 41.7 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ Q ER + L +D++I +G+ VV VLLEL+LAG L H K
Sbjct: 297 EPVSSDVAQSERAAVIGLLGPAAAPVDELIRLSGLSPAVVQTVLLELELAGALERHAGAK 356
Query: 85 VSL 87
VSL
Sbjct: 357 VSL 359
>gi|297561408|ref|YP_003680382.1| DeoR family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296845856|gb|ADH67876.1| transcriptional regulator, DeoR family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 257
Score = 41.7 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ ++ + ++D+ GI V L EL+ AG++ G V P+P
Sbjct: 3 HQGLLDAVTDGVQRVEDLARELGISPSTVRRGLGELERAGKVVRTHGGAV------PAP 55
>gi|291533226|emb|CBL06339.1| DNA protecting protein DprA [Megamonas hypermegale ART12/1]
Length = 368
Score = 41.7 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 31 YTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
E I SL+ P ID+II+ I + +LL++ L G + +
Sbjct: 304 SMTAEEQLIYDSLSFTEPKCIDEIIYKLRINVSNISFILLQMKLKGLVKETSPNFYIRAI 363
Query: 90 HL 91
Sbjct: 364 RE 365
>gi|282854572|ref|ZP_06263907.1| DNA protecting protein DprA [Propionibacterium acnes J139]
gi|282582154|gb|EFB87536.1| DNA protecting protein DprA [Propionibacterium acnes J139]
gi|314981836|gb|EFT25929.1| DNA protecting protein DprA [Propionibacterium acnes HL110PA3]
gi|315090701|gb|EFT62677.1| DNA protecting protein DprA [Propionibacterium acnes HL110PA4]
Length = 377
Score = 41.7 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDATELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|119943869|ref|YP_941549.1| DNA protecting protein DprA [Psychromonas ingrahamii 37]
gi|119862473|gb|ABM01950.1| DNA protecting protein DprA [Psychromonas ingrahamii 37]
Length = 352
Score = 41.7 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ FS D + + T + + ++ ++ +++ +G + + L
Sbjct: 276 DEFSHLCDPFSSSDGETTSLATPCHP----LLKHIDFHLTTLEQLLNRSGFDVATLQNQL 331
Query: 69 LELDLAGRLCHHPEGKVSLT 88
+EL++ GR+ +G + L+
Sbjct: 332 IELEITGRITVTTQGYIKLS 351
>gi|315104185|gb|EFT76161.1| DNA protecting protein DprA [Propionibacterium acnes HL050PA2]
Length = 377
Score = 41.7 bits (97), Expect = 0.034, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|317401638|gb|EFV82264.1| DeoR family Transcriptional regulator [Achromobacter xylosoxidans
C54]
Length = 253
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L++ + D I+ G+ V LLEL+ G L G V + P
Sbjct: 7 YQRIRALLSSLQQVSTDRIVGELGVSRETVRRDLLELEAMGELRRVHGGAVPVHSEPP 64
>gi|57640407|ref|YP_182885.1| hypothetical protein TK0472 [Thermococcus kodakarensis KOD1]
gi|57158731|dbj|BAD84661.1| hypothetical protein, conserved [Thermococcus kodakarensis KOD1]
Length = 70
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+ ++L + P +D+I TGI V LL G++
Sbjct: 4 QRVLKALESGPKTVDEIAKETGISPMEVRRYLLRFAEQGKVES 46
>gi|269792957|ref|YP_003317861.1| DNA protecting protein DprA [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100592|gb|ACZ19579.1| DNA protecting protein DprA [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 361
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAP 62
P ++ + + + I Q + + +D + I A
Sbjct: 279 PLVDLDLLFPPGEDRGSSRQ--------VDPLEGAILQVMASEGDWTVDKLALECKIGAA 330
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L L+ G + G+ SL+
Sbjct: 331 DLLSRLAILEARGLVYRSSPGRYSLS 356
>gi|261213227|ref|ZP_05927509.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio sp. RC341]
gi|260837501|gb|EEX64204.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio sp. RC341]
Length = 371
Score = 41.7 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E+ + + + + + ++ ID + T I V
Sbjct: 295 LSERVPYQPTLFSAPQGDEELPFP---------ELLANVGVEATPIDILASRTHIPVQDV 345
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ LLEL+L G + P G +
Sbjct: 346 MMQLLELELLGHVVAVPGGYIR 367
>gi|312958122|ref|ZP_07772645.1| DNA processing protein [Pseudomonas fluorescens WH6]
gi|311287553|gb|EFQ66111.1| DNA processing protein [Pseudomonas fluorescens WH6]
Length = 367
Score = 41.7 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ L+ P + + +G V L EL+L G++
Sbjct: 301 QALSRPTPTPVTHPLVALLHASPHTSEALAIASGRPLSQVLATLTELELEGQVICESGRW 360
Query: 85 VSL 87
++
Sbjct: 361 LAR 363
>gi|329889387|ref|ZP_08267730.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
gi|328844688|gb|EGF94252.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
Length = 362
Score = 41.7 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 14 QSDTNHTKNINITHYPEY-TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ P+ RI+ L+ PI D++ G+ LLEL
Sbjct: 288 TLREPPADSPFAAGSPDQIDDAVLDRIEALLSPTPIGRDELARAAGLSIAETAAALLELH 347
Query: 73 LAGRLCHHPEGKVS 86
LAGR P G S
Sbjct: 348 LAGRATLLPGGLAS 361
>gi|314923937|gb|EFS87768.1| DNA protecting protein DprA [Propionibacterium acnes HL001PA1]
gi|314966118|gb|EFT10217.1| DNA protecting protein DprA [Propionibacterium acnes HL082PA2]
gi|315094913|gb|EFT66889.1| DNA protecting protein DprA [Propionibacterium acnes HL060PA1]
gi|327328005|gb|EGE69774.1| DNA processing / uptake protein [Propionibacterium acnes HL103PA1]
Length = 377
Score = 41.7 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|93007287|ref|YP_581724.1| DNA processing protein DprA, putative [Psychrobacter cryohalolentis
K5]
gi|92394965|gb|ABE76240.1| DNA processing protein DprA, putative [Psychrobacter cryohalolentis
K5]
Length = 407
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCER-VRIKQSLNNVPIHIDDIIHHTGIEAPV 63
+ F S + K + P T E + + L+ +D +I T +
Sbjct: 324 LDKSVFKQSATIKKTIKPQEVKPAPSITVPEHLTTLFEKLDWHGQDLDALILVTELVPAQ 383
Query: 64 VYLVLLELDLAGRLCHHPEGKVSL 87
+ L+EL+L G + + +
Sbjct: 384 LIGQLMELELLGAVTVQGGRYLRI 407
>gi|325104560|ref|YP_004274214.1| DNA protecting protein DprA [Pedobacter saltans DSM 12145]
gi|324973408|gb|ADY52392.1| DNA protecting protein DprA [Pedobacter saltans DSM 12145]
Length = 361
Score = 41.4 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + + + + + I IDD+ ++ + + LL L++ + P +
Sbjct: 304 LNKDELIVFEVIKAHDQIAIDDLQVSLNMQQSKLAVALLGLEMKSVIVSLPGKIYKVN 361
>gi|327334330|gb|EGE76044.1| DNA processing / uptake protein [Propionibacterium acnes HL097PA1]
Length = 377
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|323359718|ref|YP_004226114.1| Rossmann fold nucleotide-binding protein [Microbacterium testaceum
StLB037]
gi|323276089|dbj|BAJ76234.1| predicted Rossmann fold nucleotide-binding protein [Microbacterium
testaceum StLB037]
Length = 387
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPV 63
+ + + E + R+ +L++ V DDI +G+ +
Sbjct: 301 TSADDVREMIGHSPEPDAGATSRGGEGRTDDTTRLFDALSSRVARGADDIARRSGLSSAQ 360
Query: 64 VYLVLLELDLAGRLCH 79
V L LAGR+
Sbjct: 361 VQTQLGLAQLAGRVVR 376
>gi|153810947|ref|ZP_01963615.1| hypothetical protein RUMOBE_01337 [Ruminococcus obeum ATCC 29174]
gi|149832835|gb|EDM87918.1| hypothetical protein RUMOBE_01337 [Ruminococcus obeum ATCC 29174]
Length = 302
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + L+ P ++ +I TG+ V +LLEL ++G
Sbjct: 247 TDLKLVYSCLDLQPKSVEFLIQKTGLSPEKVGGLLLELKISGLAR 291
>gi|328950082|ref|YP_004367417.1| DNA protecting protein DprA [Marinithermus hydrothermalis DSM
14884]
gi|328450406|gb|AEB11307.1| DNA protecting protein DprA [Marinithermus hydrothermalis DSM
14884]
Length = 321
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 20/62 (32%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
PE T+ E D++ + A V L L+L G P G+
Sbjct: 258 PALRPELTEAEARLYAALRAAGEALPDELAEELQLTAGEVLAGLAALELKGLAQALPGGR 317
Query: 85 VS 86
+
Sbjct: 318 YA 319
>gi|121606769|ref|YP_984098.1| DNA protecting protein DprA [Polaromonas naphthalenivorans CJ2]
gi|120595738|gb|ABM39177.1| DNA protecting protein DprA [Polaromonas naphthalenivorans CJ2]
Length = 399
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +L + +D + TG++ + LLEL+L G++ P G
Sbjct: 338 APVPGGEDTLLAALGFDAVSLDALQARTGLDTGHLQAQLLELELGGQVARLPGGLFQR 395
>gi|289427793|ref|ZP_06429504.1| DNA protecting protein DprA [Propionibacterium acnes J165]
gi|289159057|gb|EFD07250.1| DNA protecting protein DprA [Propionibacterium acnes J165]
gi|313763675|gb|EFS35039.1| DNA protecting protein DprA [Propionibacterium acnes HL013PA1]
gi|313801455|gb|EFS42706.1| DNA protecting protein DprA [Propionibacterium acnes HL110PA2]
gi|313807865|gb|EFS46346.1| DNA protecting protein DprA [Propionibacterium acnes HL087PA2]
gi|313811664|gb|EFS49378.1| DNA protecting protein DprA [Propionibacterium acnes HL083PA1]
gi|313816850|gb|EFS54564.1| DNA protecting protein DprA [Propionibacterium acnes HL059PA1]
gi|313819650|gb|EFS57364.1| DNA protecting protein DprA [Propionibacterium acnes HL046PA2]
gi|313822245|gb|EFS59959.1| DNA protecting protein DprA [Propionibacterium acnes HL036PA1]
gi|313823522|gb|EFS61236.1| DNA protecting protein DprA [Propionibacterium acnes HL036PA2]
gi|313825850|gb|EFS63564.1| DNA protecting protein DprA [Propionibacterium acnes HL063PA1]
gi|313831405|gb|EFS69119.1| DNA protecting protein DprA [Propionibacterium acnes HL007PA1]
gi|313835017|gb|EFS72731.1| DNA protecting protein DprA [Propionibacterium acnes HL056PA1]
gi|313839826|gb|EFS77540.1| DNA protecting protein DprA [Propionibacterium acnes HL086PA1]
gi|314914677|gb|EFS78508.1| DNA protecting protein DprA [Propionibacterium acnes HL005PA4]
gi|314919210|gb|EFS83041.1| DNA protecting protein DprA [Propionibacterium acnes HL050PA1]
gi|314920880|gb|EFS84711.1| DNA protecting protein DprA [Propionibacterium acnes HL050PA3]
gi|314924577|gb|EFS88408.1| DNA protecting protein DprA [Propionibacterium acnes HL036PA3]
gi|314930448|gb|EFS94279.1| DNA protecting protein DprA [Propionibacterium acnes HL067PA1]
gi|314954499|gb|EFS98905.1| DNA protecting protein DprA [Propionibacterium acnes HL027PA1]
gi|314957379|gb|EFT01482.1| DNA protecting protein DprA [Propionibacterium acnes HL002PA1]
gi|314961998|gb|EFT06099.1| DNA protecting protein DprA [Propionibacterium acnes HL002PA2]
gi|314963577|gb|EFT07677.1| DNA protecting protein DprA [Propionibacterium acnes HL082PA1]
gi|314968590|gb|EFT12688.1| DNA protecting protein DprA [Propionibacterium acnes HL037PA1]
gi|314974280|gb|EFT18376.1| DNA protecting protein DprA [Propionibacterium acnes HL053PA1]
gi|314976715|gb|EFT20810.1| DNA protecting protein DprA [Propionibacterium acnes HL045PA1]
gi|314984417|gb|EFT28509.1| DNA protecting protein DprA [Propionibacterium acnes HL005PA1]
gi|314986433|gb|EFT30525.1| DNA protecting protein DprA [Propionibacterium acnes HL005PA2]
gi|314990793|gb|EFT34884.1| DNA protecting protein DprA [Propionibacterium acnes HL005PA3]
gi|315079433|gb|EFT51426.1| DNA protecting protein DprA [Propionibacterium acnes HL053PA2]
gi|315081341|gb|EFT53317.1| DNA protecting protein DprA [Propionibacterium acnes HL078PA1]
gi|315083542|gb|EFT55518.1| DNA protecting protein DprA [Propionibacterium acnes HL027PA2]
gi|315087222|gb|EFT59198.1| DNA protecting protein DprA [Propionibacterium acnes HL002PA3]
gi|315095251|gb|EFT67227.1| DNA protecting protein DprA [Propionibacterium acnes HL038PA1]
gi|315099301|gb|EFT71277.1| DNA protecting protein DprA [Propionibacterium acnes HL059PA2]
gi|315100523|gb|EFT72499.1| DNA protecting protein DprA [Propionibacterium acnes HL046PA1]
gi|315106705|gb|EFT78681.1| DNA protecting protein DprA [Propionibacterium acnes HL030PA1]
gi|315108930|gb|EFT80906.1| DNA protecting protein DprA [Propionibacterium acnes HL030PA2]
gi|327328319|gb|EGE70081.1| DNA processing / uptake protein [Propionibacterium acnes HL096PA2]
gi|327329816|gb|EGE71572.1| DNA processing / uptake protein [Propionibacterium acnes HL096PA3]
gi|327444344|gb|EGE90998.1| DNA protecting protein DprA [Propionibacterium acnes HL043PA2]
gi|327455053|gb|EGF01708.1| DNA protecting protein DprA [Propionibacterium acnes HL087PA3]
gi|327457659|gb|EGF04314.1| DNA protecting protein DprA [Propionibacterium acnes HL083PA2]
gi|328752257|gb|EGF65873.1| DNA protecting protein DprA [Propionibacterium acnes HL020PA1]
gi|328755116|gb|EGF68732.1| DNA protecting protein DprA [Propionibacterium acnes HL087PA1]
gi|328758105|gb|EGF71721.1| DNA protecting protein DprA [Propionibacterium acnes HL025PA2]
gi|328760131|gb|EGF73709.1| DNA processing / uptake protein [Propionibacterium acnes HL099PA1]
gi|332675846|gb|AEE72662.1| DNA processing / uptake protein [Propionibacterium acnes 266]
Length = 377
Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|298293676|ref|YP_003695615.1| DeoR family transcriptional regulator [Starkeya novella DSM 506]
gi|296930187|gb|ADH90996.1| transcriptional regulator, DeoR family [Starkeya novella DSM 506]
Length = 282
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 36 RVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV------SLT 88
RI L + I + + G+ + LLEL+ GRL G V S+
Sbjct: 26 HARILDQLALSGSISVTTVAAELGVSDMTIRRDLLELEREGRLVRVHGGAVLAETPASVA 85
Query: 89 MHLPSPQ 95
M P+
Sbjct: 86 MDSEEPR 92
>gi|313794068|gb|EFS42092.1| DNA protecting protein DprA [Propionibacterium acnes HL110PA1]
gi|327451913|gb|EGE98567.1| DNA protecting protein DprA [Propionibacterium acnes HL092PA1]
Length = 376
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 296 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 355
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 356 LGMAACCLDGTWSVTL 371
>gi|6425140|gb|AAF08319.1|AF202665_2 transcriptional regulator [Spiroplasma citri]
gi|110005294|emb|CAK99618.1| putative transcriptional regulator with helix-turn-helix domain
transmembrane protein [Spiroplasma citri]
Length = 233
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 37 VRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+I L++ + ++D+I + + L E++ G L G
Sbjct: 8 EKILACLDDQQLVLVNDLITQLQLSPTTLRRDLTEMEQQGLLKRVHGG 55
>gi|314978802|gb|EFT22896.1| DNA protecting protein DprA [Propionibacterium acnes HL072PA2]
gi|315089395|gb|EFT61371.1| DNA protecting protein DprA [Propionibacterium acnes HL072PA1]
Length = 377
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|313829531|gb|EFS67245.1| DNA protecting protein DprA [Propionibacterium acnes HL063PA2]
Length = 377
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|312135863|ref|YP_004003201.1| DNA protecting protein dpra [Caldicellulosiruptor owensensis OL]
gi|311775914|gb|ADQ05401.1| DNA protecting protein DprA [Caldicellulosiruptor owensensis OL]
Length = 365
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+H++++I TG +A V ++ L++ ++ +S
Sbjct: 325 MHVENLIMLTGWDAGKVASLITSLEIKSKIIRTRGNMIS 363
>gi|225874954|ref|YP_002756413.1| DNA protecting protein DprA [Acidobacterium capsulatum ATCC 51196]
gi|225792046|gb|ACO32136.1| DNA protecting protein DprA [Acidobacterium capsulatum ATCC 51196]
Length = 401
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTG--IEAPVVYLVLLELD 72
S T ++ + + +RI + + + +++I+ + + ++ L EL+
Sbjct: 321 SPEPVTASLFDDNTAAPVEAALLRILRH--DEALQMEEILQKLEGELSSSEIFTALFELE 378
Query: 73 LAGRLCHHPEGKV 85
LAGR+ P
Sbjct: 379 LAGRIRQLPGKNY 391
>gi|50842909|ref|YP_056136.1| DNA processing / uptake protein [Propionibacterium acnes KPA171202]
gi|50840511|gb|AAT83178.1| DNA processing / uptake protein [Propionibacterium acnes KPA171202]
Length = 377
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|217424972|ref|ZP_03456468.1| DNA protecting protein DprA [Burkholderia pseudomallei 576]
gi|217391992|gb|EEC32018.1| DNA protecting protein DprA [Burkholderia pseudomallei 576]
Length = 434
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 362 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 412
>gi|134284081|ref|ZP_01770775.1| DNA protecting protein DprA [Burkholderia pseudomallei 305]
gi|134244533|gb|EBA44637.1| DNA protecting protein DprA [Burkholderia pseudomallei 305]
Length = 434
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 362 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 412
>gi|295130966|ref|YP_003581629.1| DNA protecting protein DprA [Propionibacterium acnes SK137]
gi|291376560|gb|ADE00415.1| DNA protecting protein DprA [Propionibacterium acnes SK137]
Length = 377
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMAACCLDGTWSVTL 372
>gi|329570081|gb|EGG51826.1| transcriptional regulator, DeoR family [Enterococcus faecalis
TX1467]
Length = 252
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|315167375|gb|EFU11392.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX1341]
gi|315169525|gb|EFU13542.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX1342]
Length = 252
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|315162889|gb|EFU06906.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0645]
gi|315577871|gb|EFU90062.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0630]
Length = 252
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|315149736|gb|EFT93752.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0012]
Length = 252
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|257090138|ref|ZP_05584499.1| lactose phosphotransferase system repressor [Enterococcus
faecalis CH188]
gi|256998950|gb|EEU85470.1| lactose phosphotransferase system repressor [Enterococcus
faecalis CH188]
Length = 191
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|257082280|ref|ZP_05576641.1| lactose repressor [Enterococcus faecalis E1Sol]
gi|256990310|gb|EEU77612.1| lactose repressor [Enterococcus faecalis E1Sol]
Length = 250
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 24 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 64
>gi|256762832|ref|ZP_05503412.1| lactose repressor [Enterococcus faecalis T3]
gi|257419573|ref|ZP_05596567.1| lactose repressor [Enterococcus faecalis T11]
gi|256684083|gb|EEU23778.1| lactose repressor [Enterococcus faecalis T3]
gi|257161401|gb|EEU91361.1| lactose repressor [Enterococcus faecalis T11]
Length = 250
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 24 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 64
>gi|227519027|ref|ZP_03949076.1| sugar metabolism transcriptional repressor [Enterococcus faecalis
TX0104]
gi|227553650|ref|ZP_03983699.1| sugar metabolism transcriptional repressor [Enterococcus faecalis
HH22]
gi|293383368|ref|ZP_06629281.1| lactose phosphotransferase system repressor LacR [Enterococcus
faecalis R712]
gi|293388979|ref|ZP_06633464.1| lactose phosphotransferase system repressor LacR [Enterococcus
faecalis S613]
gi|312900967|ref|ZP_07760261.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0470]
gi|312903577|ref|ZP_07762757.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0635]
gi|312907804|ref|ZP_07766795.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis DAPTO
512]
gi|312910422|ref|ZP_07769269.1| DeoR-like helix-turn-helix domain protein [Enterococcus faecalis
DAPTO 516]
gi|227073527|gb|EEI11490.1| sugar metabolism transcriptional repressor [Enterococcus faecalis
TX0104]
gi|227177232|gb|EEI58204.1| sugar metabolism transcriptional repressor [Enterococcus faecalis
HH22]
gi|291079159|gb|EFE16523.1| lactose phosphotransferase system repressor LacR [Enterococcus
faecalis R712]
gi|291081760|gb|EFE18723.1| lactose phosphotransferase system repressor LacR [Enterococcus
faecalis S613]
gi|310626832|gb|EFQ10115.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis DAPTO
512]
gi|310633453|gb|EFQ16736.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0635]
gi|311289695|gb|EFQ68251.1| DeoR-like helix-turn-helix domain protein [Enterococcus faecalis
DAPTO 516]
gi|311292066|gb|EFQ70622.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0470]
gi|315028005|gb|EFT39937.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX2137]
gi|315147547|gb|EFT91563.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX4244]
gi|315575952|gb|EFU88143.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis
TX0309B]
gi|315580742|gb|EFU92933.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis
TX0309A]
gi|327535413|gb|AEA94247.1| lactose PTS family porter repressor LacR [Enterococcus faecalis
OG1RF]
Length = 252
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|29376380|ref|NP_815534.1| lactose phosphotransferase system repressor LacR [Enterococcus
faecalis V583]
gi|256961664|ref|ZP_05565835.1| lactose repressor [Enterococcus faecalis Merz96]
gi|257079269|ref|ZP_05573630.1| lactose repressor [Enterococcus faecalis JH1]
gi|257087095|ref|ZP_05581456.1| lactose repressor [Enterococcus faecalis D6]
gi|294779344|ref|ZP_06744746.1| transcriptional regulator, DeoR family [Enterococcus faecalis
PC1.1]
gi|29343843|gb|AAO81604.1| lactose phosphotransferase system repressor LacR [Enterococcus
faecalis V583]
gi|256952160|gb|EEU68792.1| lactose repressor [Enterococcus faecalis Merz96]
gi|256987299|gb|EEU74601.1| lactose repressor [Enterococcus faecalis JH1]
gi|256995125|gb|EEU82427.1| lactose repressor [Enterococcus faecalis D6]
gi|294453573|gb|EFG21973.1| transcriptional regulator, DeoR family [Enterococcus faecalis
PC1.1]
Length = 250
Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 24 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 64
>gi|313900678|ref|ZP_07834171.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2]
gi|312954740|gb|EFR36415.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2]
Length = 255
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 38 RIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
RI + L++ I I +++ V L+EL+ G + G +
Sbjct: 9 RILELLDHKSFITIQELMEVLNASKSTVNRDLIELEKQGLIQRERGGAIK 58
>gi|184156508|ref|YP_001844847.1| Rossmann fold nucleotide-binding protein [Acinetobacter baumannii
ACICU]
gi|183208102|gb|ACC55500.1| predicted Rossmann fold nucleotide-binding protein [Acinetobacter
baumannii ACICU]
Length = 376
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID +I H I
Sbjct: 287 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLIVHHNI 346
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 347 PVSELTSSLMELELLGLCMQQSG 369
>gi|313667412|ref|YP_004047696.1| SMF-family protein [Neisseria lactamica ST-640]
gi|313004874|emb|CBN86300.1| SMF-family protein [Neisseria lactamica 020-06]
Length = 395
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + P+H D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMLSEGAAGGTAVGGILDKMGFDPVHPDVLAGQLAMPATDLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPGGRYQR 392
>gi|313887109|ref|ZP_07820805.1| DNA protecting protein DprA [Porphyromonas asaccharolytica
PR426713P-I]
gi|312923338|gb|EFR34151.1| DNA protecting protein DprA [Porphyromonas asaccharolytica
PR426713P-I]
Length = 384
Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E + L + + ID I T + V L L+ G + P+G+ L
Sbjct: 325 LEPETRPLLDLLIESGDGLSIDAICDQTLMGVDEVSFRLFLLESEGAVSLQPDGRYKL 382
>gi|295397009|ref|ZP_06807126.1| lactose PTS family porter repressor LacR [Aerococcus viridans
ATCC 11563]
gi|294974757|gb|EFG50467.1| lactose PTS family porter repressor LacR [Aerococcus viridans
ATCC 11563]
Length = 285
Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 39 IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
I L N + + DI+ + V L EL+ +G L G +SL +
Sbjct: 37 ILDLLKRNGTVSVTDIVEKLNVSDMTVRRDLTELEESGSLRRVHGGAISLGEYP 90
>gi|76808666|ref|YP_331760.1| SMF family protein [Burkholderia pseudomallei 1710b]
gi|226194651|ref|ZP_03790246.1| DNA protecting protein DprA [Burkholderia pseudomallei Pakistan 9]
gi|254188220|ref|ZP_04894732.1| DNA protecting protein DprA [Burkholderia pseudomallei Pasteur
52237]
gi|254261973|ref|ZP_04953027.1| DNA protecting protein DprA [Burkholderia pseudomallei 1710a]
gi|254295704|ref|ZP_04963161.1| DNA protecting protein DprA [Burkholderia pseudomallei 406e]
gi|76578119|gb|ABA47594.1| SMF family protein [Burkholderia pseudomallei 1710b]
gi|157806182|gb|EDO83352.1| DNA protecting protein DprA [Burkholderia pseudomallei 406e]
gi|157935900|gb|EDO91570.1| DNA protecting protein DprA [Burkholderia pseudomallei Pasteur
52237]
gi|225933352|gb|EEH29344.1| DNA protecting protein DprA [Burkholderia pseudomallei Pakistan 9]
gi|254220662|gb|EET10046.1| DNA protecting protein DprA [Burkholderia pseudomallei 1710a]
Length = 434
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 362 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 412
>gi|313813527|gb|EFS51241.1| DNA protecting protein DprA [Propionibacterium acnes HL025PA1]
Length = 377
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G S+T+
Sbjct: 357 LGMATCCLDGTWSVTL 372
>gi|260433998|ref|ZP_05787969.1| glycerol-3-phosphate regulon repressor [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417826|gb|EEX11085.1| glycerol-3-phosphate regulon repressor [Silicibacter
lacuscaerulensis ITI-1157]
Length = 253
Score = 41.4 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ +DD+ G+ + L EL AG+L G V +
Sbjct: 20 VSVDDLAERFGVTVQTIRRDLTELAEAGKLDRVHGGAVLRS 60
>gi|322506376|gb|ADX01830.1| Rossmann-fold nucleotide-binding protein [Acinetobacter baumannii
1656-2]
Length = 376
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID ++ H I
Sbjct: 287 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLVVHHNI 346
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 347 PVSELTSSLMELELLGLCMQQSG 369
>gi|237810336|ref|YP_002894787.1| DNA protecting protein DprA [Burkholderia pseudomallei MSHR346]
gi|254197171|ref|ZP_04903594.1| DNA protecting protein DprA [Burkholderia pseudomallei S13]
gi|169653913|gb|EDS86606.1| DNA protecting protein DprA [Burkholderia pseudomallei S13]
gi|237503399|gb|ACQ95717.1| DNA protecting protein DprA [Burkholderia pseudomallei MSHR346]
Length = 434
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 362 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 412
>gi|50083491|ref|YP_045001.1| putative Rossmann-fold nucleotide-binding protein [Acinetobacter
sp. ADP1]
gi|49529467|emb|CAG67179.1| putative Rossmann-fold nucleotide-binding protein involved in DNA
uptake (Smf) [Acinetobacter sp. ADP1]
Length = 383
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 40 KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
Q L+ +D + H + L+EL+L G +
Sbjct: 332 YQLLDWQGQDLDQLAQHYQGSTAELTAQLMELELLGVCIQQSGRYLR 378
>gi|254360309|ref|ZP_04976579.1| DNA protecting protein DprA [Burkholderia mallei 2002721280]
gi|148029549|gb|EDK87454.1| DNA protecting protein DprA [Burkholderia mallei 2002721280]
Length = 434
Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 362 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 412
>gi|148238859|ref|YP_001224246.1| Rossmann fold nucleotide-binding protein involved in DNA uptake
[Synechococcus sp. WH 7803]
gi|147847398|emb|CAK22949.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Synechococcus sp. WH 7803]
Length = 368
Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ + F T + + P V++ Q ++N ++ + + +
Sbjct: 286 LVDLSAFIHALGTGPVPSPDSVGKPMPRTPSTVKLLQQVDNGAT-LEQMARSLQDDPQHI 344
Query: 65 YLVLLELDLAGRLCHHPE 82
L++L+L G + P
Sbjct: 345 AQQLMQLELDGVVTPMPG 362
>gi|121598283|ref|YP_994103.1| DNA protecting protein DprA [Burkholderia mallei SAVP1]
gi|126448750|ref|YP_001081877.1| DNA protecting protein DprA [Burkholderia mallei NCTC 10247]
gi|238561913|ref|ZP_00441208.2| DNA protecting protein DprA [Burkholderia mallei GB8 horse 4]
gi|251767986|ref|ZP_02269085.2| DNA protecting protein DprA [Burkholderia mallei PRL-20]
gi|254203662|ref|ZP_04910022.1| DNA protecting protein DprA [Burkholderia mallei FMH]
gi|121227093|gb|ABM49611.1| DNA protecting protein DprA [Burkholderia mallei SAVP1]
gi|126241620|gb|ABO04713.1| DNA protecting protein DprA [Burkholderia mallei NCTC 10247]
gi|147745174|gb|EDK52254.1| DNA protecting protein DprA [Burkholderia mallei FMH]
gi|238523607|gb|EEP87044.1| DNA protecting protein DprA [Burkholderia mallei GB8 horse 4]
gi|243061152|gb|EES43338.1| DNA protecting protein DprA [Burkholderia mallei PRL-20]
Length = 434
Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 362 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 412
>gi|330819889|ref|YP_004348751.1| transcriptional regulator, DeoR family [Burkholderia gladioli
BSR3]
gi|327371884|gb|AEA63239.1| transcriptional regulator, DeoR family [Burkholderia gladioli
BSR3]
Length = 256
Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L ++ + ++ + G+ V L+EL+ AG + G + + LP
Sbjct: 7 YRRIRALLKSHGTVSVEHMTQALGVSRETVRRDLVELETAGEIRRVHGGAMLVESELP 64
>gi|114566375|ref|YP_753529.1| DNA uptake Rossmann fold nucleotide-binding protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337310|gb|ABI68158.1| Rossmann-fold nucleotide-binding protein involved in DNA uptake
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 362
Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
K + + + + + L P+ DDII TG + +LL+L+LAG +
Sbjct: 293 PEKELPLQEQLLFLDEQEKVVVNCLAGDPLLFDDIIASTGFNIGELSRLLLKLELAGIVK 352
Query: 79 HHPEGKV 85
P
Sbjct: 353 SLPGNYY 359
>gi|218288280|ref|ZP_03492579.1| DNA protecting protein DprA [Alicyclobacillus acidocaldarius LAA1]
gi|218241639|gb|EED08812.1| DNA protecting protein DprA [Alicyclobacillus acidocaldarius LAA1]
Length = 366
Score = 41.0 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 4 PQIEQ-NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P ++ + F +D I + E R + PI ++ G++
Sbjct: 279 PLVDPNDLFPEPADVEIAGPWKIPAHLEPCYRALAR------HQPIRAGELATVAGLDLG 332
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
V+ LLE++LA + HP+G +
Sbjct: 333 YVFGALLEMELACMVTRHPDGTYHI 357
>gi|307269411|ref|ZP_07550754.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX4248]
gi|306514250|gb|EFM82822.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX4248]
Length = 77
Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 66
>gi|148257019|ref|YP_001241604.1| Crp/FNR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146409192|gb|ABQ37698.1| transcriptional regulator, Crp/Fnr family [Bradyrhizobium sp.
BTAi1]
Length = 237
Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 36 RVRIKQSLNNV-----PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R R+ P+ DI + G+ V +L+ G + P G VSL
Sbjct: 170 RDRLVDLRGPSNIVPLPMSRQDIADYLGLTIETVSRTFTKLERDGIITILPGG-VSL 225
>gi|254420463|ref|ZP_05034187.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
gi|196186640|gb|EDX81616.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
Length = 356
Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 23/68 (33%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
Y E R+ L+ P D+I V LLEL LAGR
Sbjct: 289 APPSEPMDYGEVDDAFLDRVAALLSPTPTPRDEIARALNAPMGQVAAALLELSLAGRAEL 348
Query: 80 HPEGKVSL 87
P G S+
Sbjct: 349 LPGGLASI 356
>gi|332875642|ref|ZP_08443454.1| DNA protecting protein DprA [Acinetobacter baumannii 6014059]
gi|332736215|gb|EGJ67230.1| DNA protecting protein DprA [Acinetobacter baumannii 6014059]
Length = 383
Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID ++ H I
Sbjct: 294 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLVVHHNI 353
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 354 PVSELTSSLMELELLGLCMQQSG 376
>gi|308273580|emb|CBX30182.1| Protein smf [uncultured Desulfobacterium sp.]
Length = 373
Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
E ++ ++L + P+HID++ +E + +LL+L+L + P SL +
Sbjct: 311 LNAEESQVLKALESYPVHIDELTRKVKMETGKLLSILLKLELQDLIKQAPGKLFSLRIKT 370
Query: 92 PS 93
Sbjct: 371 EE 372
>gi|225872979|ref|YP_002754438.1| transcriptional regulator, DeoR family [Acidobacterium capsulatum
ATCC 51196]
gi|225794483|gb|ACO34573.1| transcriptional regulator, DeoR family [Acidobacterium capsulatum
ATCC 51196]
Length = 261
Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 36 RVRIKQS-LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+I Q+ L +D++ TG A V L+ L+ G + G
Sbjct: 9 EKQILQAVLRQGKSSVDELASLTGASAASVRRDLIRLEERGLVNRTHGG 57
>gi|313826227|gb|EFS63941.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL063PA1]
Length = 232
Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 51 DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
D ++ TG + L +L+ G+L G V++ + P P
Sbjct: 2 DTLVELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 46
>gi|158315581|ref|YP_001508089.1| ArsR family transcriptional regulator [Frankia sp. EAN1pec]
gi|158110986|gb|ABW13183.1| transcriptional regulator, ArsR family [Frankia sp. EAN1pec]
Length = 117
Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R R+ + L P +++++ G+ P V L L AG + P+G+ L + P
Sbjct: 11 DPHRRRVLELLRAGPRPVNELVEQLGLSQPGVSKHLRILREAGLVTVRPDGQRRLYLLEP 70
Query: 93 SP 94
+P
Sbjct: 71 AP 72
>gi|304440375|ref|ZP_07400264.1| DNA processing protein DprA [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371127|gb|EFM24744.1| DNA processing protein DprA [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 362
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + + + +D I+ +T V +L L++ G + G+
Sbjct: 309 DELIVYDLIVKGKNDVDSIVQNTNFSVSQVSGILTVLEIKGVIMEESMGRF 359
>gi|171911229|ref|ZP_02926699.1| regulatory protein ArsR [Verrucomicrobium spinosum DSM 4136]
Length = 120
Score = 41.0 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R ++ L+ + D+ I V L L+ AG + G+V
Sbjct: 17 ADPTRRQMLAQLSAGETCVTDLARPHAISLAAVSKHLGVLEKAGLVKRQRNGRVHSMTLD 76
Query: 92 PSP 94
P P
Sbjct: 77 PKP 79
>gi|320326684|gb|EFW82729.1| DNA processing protein DprA [Pseudomonas syringae pv. glycinea str.
B076]
gi|320331342|gb|EFW87285.1| DNA processing protein DprA [Pseudomonas syringae pv. glycinea str.
race 4]
Length = 372
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ P + + +G V L EL+L GR+ +
Sbjct: 320 HPLLALLHAAPHTSEGLSVSSGWPLLKVLAGLTELELDGRISCEAGRWFARA 371
>gi|291557378|emb|CBL34495.1| Predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Eubacterium siraeum V10Sc8a]
Length = 492
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 1 MVHPQIEQN----FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIH 55
++ P E + + Q K E I + N+ + +D ++
Sbjct: 397 IIAPIAETDNTDVSKAEQVTDTEDKQSGQIAEAAENASEAAEILGIIANSDGVTLDTLLS 456
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + +L +L+++G + G ++
Sbjct: 457 ACSLSFGELSEILADLEISGAVSCGAGGIYTV 488
>gi|221194723|ref|ZP_03567780.1| putative DNA processing protein DprA [Atopobium rimae ATCC 49626]
gi|221185627|gb|EEE18017.1| putative DNA processing protein DprA [Atopobium rimae ATCC 49626]
Length = 299
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + RI +L P +++ G + + L + + +G + P+G+
Sbjct: 222 ARAQKDQTSPKSRIISALLASPSRPEELAMRLGEDVLTLMRTLTDFEASGIIQRLPDGRY 281
>gi|323516244|gb|ADX90625.1| Rossmann fold nucleotide-binding protein [Acinetobacter baumannii
TCDC-AB0715]
Length = 383
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID ++ H I
Sbjct: 294 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLVVHHNI 353
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 354 PVSELTSSLMELELLGLCMQQSG 376
>gi|289627011|ref|ZP_06459965.1| DNA processing protein DprA [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289647924|ref|ZP_06479267.1| DNA processing protein DprA [Pseudomonas syringae pv. aesculi str.
2250]
gi|330867903|gb|EGH02612.1| DNA processing protein DprA [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 372
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ P + + + P V L EL+L GR+ +
Sbjct: 317 PCDHPLLALLHAAPHTSEGLSVSSCWPLPKVLAGLTELELDGRISCEAGRWFARA 371
>gi|70733537|ref|YP_257176.1| smf protein [Pseudomonas fluorescens Pf-5]
gi|68347836|gb|AAY95442.1| smf protein [Pseudomonas fluorescens Pf-5]
Length = 364
Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T + L+ P + + +G P V L EL++ GR
Sbjct: 300 PPSASLPTAACTHPLLALLHAAPHSSEALASASGWPLPRVLAALTELEIEGRAVDENGRW 359
Query: 85 VSL 87
+
Sbjct: 360 YAR 362
>gi|167736557|ref|ZP_02409331.1| DNA protecting protein DprA [Burkholderia pseudomallei 14]
gi|167822175|ref|ZP_02453646.1| DNA protecting protein DprA [Burkholderia pseudomallei 9]
gi|167892268|ref|ZP_02479670.1| DNA protecting protein DprA [Burkholderia pseudomallei 7894]
gi|167908985|ref|ZP_02496076.1| DNA protecting protein DprA [Burkholderia pseudomallei 112]
Length = 396
Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 324 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 374
>gi|167917027|ref|ZP_02504118.1| DNA protecting protein DprA [Burkholderia pseudomallei BCC215]
Length = 396
Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 324 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 374
>gi|90406711|ref|ZP_01214904.1| DNA processing protein [Psychromonas sp. CNPT3]
gi|90312164|gb|EAS40256.1| DNA processing protein [Psychromonas sp. CNPT3]
Length = 164
Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ Q ++ +D ++ +G++ + L+EL++ G + +G + L
Sbjct: 114 LLQHIDFYNTTLDQLLQRSGLDLLSLQKQLIELEIDGSISLSVDGYIKL 162
>gi|53717761|ref|YP_106747.1| SMF family protein [Burkholderia pseudomallei K96243]
gi|167813631|ref|ZP_02445311.1| DNA protecting protein DprA [Burkholderia pseudomallei 91]
gi|52208175|emb|CAH34106.1| SMF family protein [Burkholderia pseudomallei K96243]
Length = 396
Score = 40.6 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 324 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 374
>gi|53724673|ref|YP_101981.1| DNA processing protein DprA [Burkholderia mallei ATCC 23344]
gi|124383553|ref|YP_001028236.1| DNA protecting protein DprA [Burkholderia mallei NCTC 10229]
gi|254177084|ref|ZP_04883741.1| DNA protecting protein DprA [Burkholderia mallei ATCC 10399]
gi|254208637|ref|ZP_04914985.1| DNA protecting protein DprA [Burkholderia mallei JHU]
gi|52428096|gb|AAU48689.1| DNA processing protein DprA, putative [Burkholderia mallei ATCC
23344]
gi|124291573|gb|ABN00842.1| DNA protecting protein DprA [Burkholderia mallei NCTC 10229]
gi|147750513|gb|EDK57582.1| DNA protecting protein DprA [Burkholderia mallei JHU]
gi|160698125|gb|EDP88095.1| DNA protecting protein DprA [Burkholderia mallei ATCC 10399]
Length = 396
Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ ++ P+ ++ + T + + ++ +LL+L+LAGR+ P G+ +
Sbjct: 324 RRLLDAIGYGPVPLELLAQRTSLPSGTLHRLLLQLELAGRVAALPGGRYTR 374
>gi|257456000|ref|ZP_05621209.1| DNA protecting protein DprA [Enhydrobacter aerosaccus SK60]
gi|257446589|gb|EEV21623.1| DNA protecting protein DprA [Enhydrobacter aerosaccus SK60]
Length = 409
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 12 SSQSDTNHTKNINITHYPEYTQ--CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
S Q + +N P + L+ V +D ++ T + + L+
Sbjct: 330 SPQLPSESAQNTQPHQAPLAMDVAPHLQTLLNQLDWVGQDLDSLVDKTRTDIATLMGWLI 389
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+L G + G
Sbjct: 390 ELELMGLVMQ-RGGLYMR 406
>gi|119503588|ref|ZP_01625671.1| SMF protein [marine gamma proteobacterium HTCC2080]
gi|119460650|gb|EAW41742.1| SMF protein [marine gamma proteobacterium HTCC2080]
Length = 380
Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 7/69 (10%), Positives = 24/69 (34%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+++ N T + + ++ L + + + + + ++ +L+L G
Sbjct: 306 ALDYSSNAGETVSLAPLEPAKRQLLTLLGDGEHDLASLASALQCSSRQLLAMVTQLELQG 365
Query: 76 RLCHHPEGK 84
+ G
Sbjct: 366 YVEQTSAGL 374
>gi|312143685|ref|YP_003995131.1| DNA protecting protein DprA [Halanaerobium sp. 'sapolanicus']
gi|311904336|gb|ADQ14777.1| DNA protecting protein DprA [Halanaerobium sp. 'sapolanicus']
Length = 381
Score = 40.6 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + +I I+ DD+I + + V +L++ +L +
Sbjct: 304 DRNELQKVYPELNYDEKKILYLFQYELEIYYDDLIRLSNLTTDKVDKILIKFELMDLIQR 363
Query: 80 HPEGKVS 86
K
Sbjct: 364 LKGKKYR 370
>gi|260557578|ref|ZP_05829792.1| rossmann fold nucleotide-binding protein [Acinetobacter baumannii
ATCC 19606]
gi|260408751|gb|EEX02055.1| rossmann fold nucleotide-binding protein [Acinetobacter baumannii
ATCC 19606]
Length = 376
Score = 40.6 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID ++ H I
Sbjct: 287 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLVVHHNI 346
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 347 PVSELTSSLMELELLGLCMQQSG 369
>gi|315230977|ref|YP_004071413.1| hypothetical protein TERMP_01214 [Thermococcus barophilus MP]
gi|315184005|gb|ADT84190.1| hypothetical protein TERMP_01214 [Thermococcus barophilus MP]
Length = 310
Score = 40.6 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E + + ++ + L N P+ +++ G+ V L+L +++ G + EG+
Sbjct: 247 EVLRSDEEKVIELLKNGPVLQSELVKKLGVSKAKVSLLLKDMEKKGLIERVKEGR 301
>gi|262166816|ref|ZP_06034553.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio mimicus VM223]
gi|262026532|gb|EEY45200.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio mimicus VM223]
Length = 371
Score = 40.6 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E+ + + + + + + ++ ID + T I V
Sbjct: 295 LSERVPYQATLFSAPQSDEELPFP---------ELLANVGVEATPIDILASRTHIPVQDV 345
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ LLEL+L G + P G +
Sbjct: 346 MMQLLELELLGHVVAVPGGYIR 367
>gi|262172814|ref|ZP_06040492.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio mimicus MB-451]
gi|261893890|gb|EEY39876.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio mimicus MB-451]
Length = 371
Score = 40.6 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E+ + + + + + + ++ ID + T I V
Sbjct: 295 LSERVPYQATLFSAPQSDEELPFP---------ELLANVGVEATPIDILASRTHIPVQDV 345
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ LLEL+L G + P G +
Sbjct: 346 MMQLLELELLGHVVAVPGGYIR 367
>gi|299771933|ref|YP_003733959.1| Rossmann fold nucleotide-binding protein [Acinetobacter sp. DR1]
gi|298702021|gb|ADI92586.1| Rossmann fold nucleotide-binding protein [Acinetobacter sp. DR1]
Length = 377
Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + SQ N T+ + ++ PE + + QSL+ V ID ++ H
Sbjct: 291 IIEDLALPTQWQSQQ-QNSTEEVVVSCAPEIPEHLIN-LYQSLDWVGQDIDQLVIHHSQP 348
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 349 VAELTSSLMELELLGLCMQQSG 370
>gi|126658133|ref|ZP_01729284.1| SMF protein [Cyanothece sp. CCY0110]
gi|126620504|gb|EAZ91222.1| SMF protein [Cyanothece sp. CCY0110]
Length = 375
Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ E ++I Q+++ D I+ G+ V LL+L+L G + P
Sbjct: 308 EVEKKEDVPKLDPELLKIFQAISTEATSFDVIVEKAGLPTAQVSGGLLQLELEGLITQLP 367
Query: 82 EGKVSL 87
+
Sbjct: 368 GMRYQR 373
>gi|258622992|ref|ZP_05718007.1| Smf/DprA family protein [Vibrio mimicus VM573]
gi|258584775|gb|EEW09509.1| Smf/DprA family protein [Vibrio mimicus VM573]
Length = 371
Score = 40.6 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E+ + + + + + + ++ ID + T I V
Sbjct: 295 LSERVPYQATLFSAPQSDEELPFP---------ELLANVGVEATPIDILASRTHIPVQDV 345
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ LLEL+L G + P G +
Sbjct: 346 MMQLLELELLGHVVAVPGGYIR 367
>gi|327445018|gb|EGE91672.1| DNA protecting protein DprA [Propionibacterium acnes HL043PA1]
Length = 377
Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 8/76 (10%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEGKVSLTM 89
G +G ++T+
Sbjct: 357 LGMAACCLDGTWAVTL 372
>gi|269958987|ref|YP_003328776.1| putativeDNA recombination-mediator protein A [Anaplasma centrale
str. Israel]
gi|269848818|gb|ACZ49462.1| putativeDNA recombination-mediator protein A [Anaplasma centrale
str. Israel]
Length = 378
Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + + + R I Q L+ P I+D+ T I + L+EL+L +
Sbjct: 304 RHAARRQDAATDGAGSAAIRRAILQQLSVSPTDIEDLAACTKIGTSTLLAELIELELLRK 363
Query: 77 LCHHPEGKVSLTMHL 91
+ P + +L++
Sbjct: 364 VHRFPGNRFALSLEN 378
>gi|258590885|emb|CBE67180.1| DNA processing chain A (DprA/Smf) [NC10 bacterium 'Dutch sediment']
Length = 379
Score = 40.6 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q + +++T + + V I +L P+ IDD+I T + A + +LL L L
Sbjct: 297 QVAPSAQTMLDLTAARSPLEPQEVLIIDTLEAGPMQIDDLIARTQLPAGQMASLLLSLML 356
Query: 74 AGRLCHHPEGKVS 86
G + P +
Sbjct: 357 KGLIEELPGKSFA 369
>gi|300932543|ref|ZP_07147799.1| hypothetical protein CresD4_00620 [Corynebacterium resistens DSM
45100]
Length = 93
Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+++ + +I TG+ V LL+L+ GR
Sbjct: 1 MSDGVTTVGEIARRTGLAPSTVDAALLQLERMGRARKV 38
>gi|226357401|ref|YP_002787141.1| DNA processing protein DprA (Smf) [Deinococcus deserti VCD115]
gi|226319391|gb|ACO47387.1| putative DNA processing protein DprA (Smf) [Deinococcus deserti
VCD115]
Length = 369
Score = 40.6 bits (94), Expect = 0.080, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ + ++L P +DD+ TG+ P + L+ L L G
Sbjct: 308 PARPLPTLPPDQAAVLEAL-TAPATLDDLRAATGLCLPELQTALVMLQLQGLAEESGGRW 366
Query: 85 VSL 87
V
Sbjct: 367 VRR 369
>gi|261822171|ref|YP_003260277.1| DeoR family transcriptional regulator [Pectobacterium wasabiae
WPP163]
gi|261606184|gb|ACX88670.1| transcriptional regulator, DeoR family [Pectobacterium wasabiae
WPP163]
Length = 256
Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +LN + + II H G+ V +L+L+ AG L G V+ T P
Sbjct: 11 QALLSTLNR--VSTEKIIQHLGVSRETVRRDILKLEAAGALRRVHGGIVATTEEPEPP 66
>gi|241664934|ref|YP_002983294.1| DNA protecting protein DprA [Ralstonia pickettii 12D]
gi|240866961|gb|ACS64622.1| DNA protecting protein DprA [Ralstonia pickettii 12D]
Length = 401
Score = 40.6 bits (94), Expect = 0.083, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +L P+ +D + TG A + LL L+L R+ P G+
Sbjct: 348 ETALLDALGFDPVDLDTLCERTGQAAAALSAQLLALELDSRVERQPGGRF 397
>gi|282883340|ref|ZP_06291934.1| DNA protecting protein DprA [Peptoniphilus lacrimalis 315-B]
gi|281296844|gb|EFA89346.1| DNA protecting protein DprA [Peptoniphilus lacrimalis 315-B]
Length = 360
Score = 40.6 bits (94), Expect = 0.084, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
K H E + I + + I I++I + + + + +L +L+L +
Sbjct: 293 KKEEEKHIIENLSEDENLILNLMEDGNITIEEICNKSNFDVIYINSLLTKLELKSVIE-- 350
Query: 81 PEGKVSLT 88
K+SLT
Sbjct: 351 ---KISLT 355
>gi|255280064|ref|ZP_05344619.1| DNA processing protein DprA [Bryantella formatexigens DSM 14469]
gi|255269155|gb|EET62360.1| DNA processing protein DprA [Bryantella formatexigens DSM 14469]
Length = 367
Score = 40.6 bits (94), Expect = 0.084, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ L++ ++ + T I V L L+L G +
Sbjct: 312 SSEKLVYSCLDSDAKNLQTLAEETDIPVWQVMGALSALELKGLV 355
>gi|149375616|ref|ZP_01893385.1| probable smf protein [Marinobacter algicola DG893]
gi|149360018|gb|EDM48473.1| probable smf protein [Marinobacter algicola DG893]
Length = 388
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
++ Q++ + + + E + + ++L P DD+ TG+ A
Sbjct: 311 WTGQNEGDPSSVVMKRPAIEGLDSREIAVLEALGYDPQSTDDLCSVTGLPAD 362
>gi|240124645|ref|ZP_04737531.1| DprA [Neisseria gonorrhoeae SK-92-679]
gi|268683219|ref|ZP_06150081.1| DNA processing chain A [Neisseria gonorrhoeae SK-92-679]
gi|268623503|gb|EEZ55903.1| DNA processing chain A [Neisseria gonorrhoeae SK-92-679]
Length = 397
Score = 40.2 bits (93), Expect = 0.087, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ I + PIH D + + A +Y LLEL+L G
Sbjct: 326 APPPAAKMPSEGA---AGGTAGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDG 382
Query: 76 RLCHHPEGKVSL 87
+ P G+
Sbjct: 383 SVAAMPGGRYQR 394
>gi|262371338|ref|ZP_06064656.1| DNA protecting protein DprA [Acinetobacter johnsonii SH046]
gi|262313675|gb|EEY94724.1| DNA protecting protein DprA [Acinetobacter johnsonii SH046]
Length = 377
Score = 40.2 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 8/80 (10%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPE-YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
++ + +++ T + + + L+ V ++D + + +
Sbjct: 293 EDLALPTQWYSQSQSQETTPSASIEIPSDLLELYNQLDWVGQNMDQLNFKLNTDIATLTS 352
Query: 67 VLLELDLAGRLCHHPEGKVS 86
L+EL++ G +
Sbjct: 353 QLMELEILGLAQQQAGNYLR 372
>gi|258626116|ref|ZP_05720967.1| Smf/DprA family protein [Vibrio mimicus VM603]
gi|258581642|gb|EEW06540.1| Smf/DprA family protein [Vibrio mimicus VM603]
Length = 371
Score = 40.2 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E+ + + + + + + ++ ID + T I V
Sbjct: 295 LSERVPYQATLFSAPQGDEELPFP---------ELLANVGVEATPIDILASRTHIPVQDV 345
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ LLEL+L G + P G +
Sbjct: 346 MMQLLELELLGHVVAVPGGYIR 367
>gi|268325350|emb|CBH38938.1| hypothetical protein BSM_24150 [uncultured archaeon]
gi|268325957|emb|CBH39545.1| conserved hypothetical protein [uncultured archaeon]
Length = 160
Score = 40.2 bits (93), Expect = 0.090, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 33 QCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+I L I +D++ TG V L ++ AG +
Sbjct: 23 DELSSKIIGILFIEPEEIALDELARRTGYSLSAVSTALKFIERAGIVKR 71
>gi|303232642|ref|ZP_07319327.1| putative DNA protecting protein DprA [Atopobium vaginae PB189-T1-4]
gi|302481128|gb|EFL44203.1| putative DNA protecting protein DprA [Atopobium vaginae PB189-T1-4]
Length = 303
Score = 40.2 bits (93), Expect = 0.091, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+ +L P+ D++ V L + ++ G + +G+ S
Sbjct: 241 EGRMLAALIANPMRADELACALDEPIVSVLSALGDYEIQGLVKRMLDGRFS 291
>gi|294648883|ref|ZP_06726339.1| smf family protein [Acinetobacter haemolyticus ATCC 19194]
gi|292825274|gb|EFF84021.1| smf family protein [Acinetobacter haemolyticus ATCC 19194]
Length = 376
Score = 40.2 bits (93), Expect = 0.091, Method: Composition-based stats.
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
++ + ++ + + + Q L+ V ID + +
Sbjct: 292 EDLALPTQWQSEQQSSEKSSNAAPNLPSHLVGLYQCLDWVGQDIDQLTQQQQSNIAELTS 351
Query: 67 VLLELDLAGRLCHHPEGKVS 86
L+EL+L G +
Sbjct: 352 QLMELELLGLCTQQGGRYLR 371
>gi|120552988|ref|YP_957339.1| DNA protecting protein DprA [Marinobacter aquaeolei VT8]
gi|120322837|gb|ABM17152.1| DNA protecting protein DprA [Marinobacter aquaeolei VT8]
Length = 405
Score = 40.2 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 28/74 (37%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+S Q+ + + + + + ++L P D + TG+ A + LL
Sbjct: 320 WSMQAQPAEPEATENSSDLSFLDSREIAVFEALGYDPQSTDALGLATGLPADQLLQSLLI 379
Query: 71 LDLAGRLCHHPEGK 84
L+L G P G
Sbjct: 380 LELEGLAHACPGGY 393
>gi|46445706|ref|YP_007071.1| putative protein required for chromosomal DNA transformation
[Candidatus Protochlamydia amoebophila UWE25]
gi|46399347|emb|CAF22796.1| putative protein required for chromosomal DNA transformation
[Candidatus Protochlamydia amoebophila UWE25]
Length = 363
Score = 40.2 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
Q E + + Q L + I++I+ + V +L+ L L + P
Sbjct: 307 LQQEEIHLLQKLPVEELSIEEIVKRAQLPIQQVNSLLMSLVLKKIIKEFPGKFYK 361
>gi|254805838|ref|YP_003084059.1| DNA processing protein DprA [Neisseria meningitidis alpha14]
gi|254669380|emb|CBA08516.1| DNA processing protein DprA [Neisseria meningitidis alpha14]
Length = 395
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I + PIH D + + A +Y LLEL+L G + P G+
Sbjct: 344 ILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQR 392
>gi|14521903|ref|NP_127380.1| ArsR family transcriptional regulator [Pyrococcus abyssi GE5]
gi|5459123|emb|CAB50609.1| Transcriptional regulatory protein, arsR family [Pyrococcus
abyssi GE5]
Length = 184
Score = 40.2 bits (93), Expect = 0.095, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R++I + L + P+ + ++ G + VY + L+ AG +
Sbjct: 19 DRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKAGLVE 64
>gi|251790097|ref|YP_003004818.1| DeoR family transcriptional regulator [Dickeya zeae Ech1591]
gi|247538718|gb|ACT07339.1| transcriptional regulator, DeoR family [Dickeya zeae Ech1591]
Length = 258
Score = 40.2 bits (93), Expect = 0.097, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ D II H G+ V +L+L+ G L G VS + P
Sbjct: 20 VSTDHIIQHLGVSRETVRRDVLKLEAQGVLRRVHGGVVSTGVEPEPP 66
>gi|262402046|ref|ZP_06078610.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio sp. RC586]
gi|262351692|gb|EEZ00824.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio sp. RC586]
Length = 371
Score = 40.2 bits (93), Expect = 0.098, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
E+ + + + + + + ++ ID + T I +
Sbjct: 295 LSERVPYQATLFSAPQGDEELPFP---------ELLANVGVEATPIDILASRTQIPVQDI 345
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
+ LLEL+L G + P G +
Sbjct: 346 MMQLLELELLGHVVAVPGGYIR 367
>gi|116621518|ref|YP_823674.1| DNA protecting protein DprA [Candidatus Solibacter usitatus
Ellin6076]
gi|116224680|gb|ABJ83389.1| DNA protecting protein DprA [Candidatus Solibacter usitatus
Ellin6076]
Length = 391
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 26 THYPEYTQCERVRIKQSLNNV-PIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R + L IH+DD++ + L EL++ G + P
Sbjct: 326 SDPAPELGTVSRRTLEVLQVDNSIHLDDLLEKVEDTSPSELIAALFELEMLGLVKQLPGK 385
>gi|288869534|ref|ZP_05974841.2| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
gi|288861786|gb|EFC94084.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
2374]
Length = 266
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R++I +L P+++ DI TG+ + + L+L G + ++
Sbjct: 30 RLKILATLYEQPLNMKDINRTTGLSYSSISSNMFGLELGGFIYR-SGNLYHIS 81
>gi|148642464|ref|YP_001272977.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061]
gi|148551481|gb|ABQ86609.1| predicted transcriptional regulator [Methanobrevibacter smithii
ATCC 35061]
Length = 263
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R++I +L P+++ DI TG+ + + L+L G + ++
Sbjct: 27 RLKILATLYEQPLNMKDINRTTGLSYSSISSNMFGLELGGFIYR-SGNLYHIS 78
>gi|146342150|ref|YP_001207198.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
gi|146194956|emb|CAL78981.1| putative transcriptional regulator with a cAMP binding domain, Crp
family; putative nitrogen fixation regulation protein
fixK [Bradyrhizobium sp. ORS278]
Length = 194
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 36 RVRIKQSLNNV-----PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R R+ + P+ DI + G+ V +L+ G + P G VSL
Sbjct: 127 RDRLVELRGPSNIVPLPMSRQDIADYLGLTIETVSRTFTKLERDGVIAILPGG-VSL 182
>gi|291280181|ref|YP_003497016.1| DNA processing protein A [Deferribacter desulfuricans SSM1]
gi|290754883|dbj|BAI81260.1| DNA processing protein A [Deferribacter desulfuricans SSM1]
Length = 378
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+I +L P +ID++ ++ + L ++L G +
Sbjct: 320 EDALEEKIYNALALFPKNIDELCLSINLDYVSIMNKLSMMELKGLI 365
>gi|293611138|ref|ZP_06693436.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826389|gb|EFF84756.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 377
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + SQ N T+ ++ PE + + QSL+ V +ID ++ H
Sbjct: 291 IIEDLALPTQWQSQQ-QNSTEEAVVSSTPEIPEHLIN-LYQSLDWVGQNIDQLVLHHSQP 348
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 349 VAELTSSLMELELLGLCMQQSG 370
>gi|34763132|ref|ZP_00144101.1| Smf protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|237742000|ref|ZP_04572481.1| SMF family protein [Fusobacterium sp. 4_1_13]
gi|256845340|ref|ZP_05550798.1| DNA protecting protein DprA [Fusobacterium sp. 3_1_36A2]
gi|27887195|gb|EAA24297.1| Smf protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|229429648|gb|EEO39860.1| SMF family protein [Fusobacterium sp. 4_1_13]
gi|256718899|gb|EEU32454.1| DNA protecting protein DprA [Fusobacterium sp. 3_1_36A2]
Length = 288
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I SL++ ++D+I+ T IE + L+ L++ G + G+
Sbjct: 239 ILNSLSSE-KNLDNILIETKIEQTEILAELMALEIMGVIKSIAGGRYK 285
>gi|330957383|gb|EGH57643.1| DNA processing protein DprA [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 371
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L+ P + + +G P V L EL+L R+ +
Sbjct: 319 HPLLALLHAAPHTSEGLSVSSGWPLPKVLAGLTELELDERISCEAGRWFARA 370
>gi|153854395|ref|ZP_01995673.1| hypothetical protein DORLON_01668 [Dorea longicatena DSM 13814]
gi|149752921|gb|EDM62852.1| hypothetical protein DORLON_01668 [Dorea longicatena DSM 13814]
Length = 238
Score = 40.2 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + L+ P + ++ TG+ + L+ L+L G +
Sbjct: 181 LESPEFMVYSCLDLFPKGTNQLMKETGLSVTELMERLITLELNGYVKEVSRNYY 234
>gi|320012239|gb|ADW07089.1| transcriptional regulator, DeoR family [Streptomyces flavogriseus
ATCC 33331]
Length = 253
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 18/61 (29%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
P R I +L +DD+ G+ + L L+ + G
Sbjct: 2 SEENPAEGDHRRASIVTALREGVRRVDDLARACGVSTMTIRRDLRVLEQRNEIRRVRGGA 61
Query: 85 V 85
V
Sbjct: 62 V 62
>gi|88860595|ref|ZP_01135232.1| hypothetical protein PTD2_05040 [Pseudoalteromonas tunicata D2]
gi|88817190|gb|EAR27008.1| hypothetical protein PTD2_05040 [Pseudoalteromonas tunicata D2]
Length = 363
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L + +D++ + T I + LL+L+L+ + G V L
Sbjct: 307 DDEEPLLAELGYDVMTVDELSNKTNIPIEQLLTRLLDLELSNHVERVLGGYVKL 360
>gi|226952178|ref|ZP_03822642.1| Rossmann-fold nucleotide-binding protein involved in DNA uptake
(Smf) [Acinetobacter sp. ATCC 27244]
gi|226837016|gb|EEH69399.1| Rossmann-fold nucleotide-binding protein involved in DNA uptake
(Smf) [Acinetobacter sp. ATCC 27244]
Length = 364
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
++ + ++ + + + Q L+ V ID + +
Sbjct: 280 EDLALPTQWQSEQQSSEKSSNAAPNLPSHLVGLYQCLDWVGQDIDQLTQQQQSNIAELTS 339
Query: 67 VLLELDLAGRLCHHPEGKVS 86
L+EL+L G +
Sbjct: 340 HLMELELLGLCTQQGGRYLR 359
>gi|13475230|ref|NP_106794.1| hypothetical protein mlr8761 [Mesorhizobium loti MAFF303099]
gi|14025981|dbj|BAB52580.1| mlr8761 [Mesorhizobium loti MAFF303099]
Length = 269
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 21 KNINITHYPEYTQCERVRI--KQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ P + + + L PI +++I G V L L+ G
Sbjct: 7 SPNDQDRAPGEVSTVQRALNLLKLLGTTEKPIGVNEIARRLGKHVSAVSRTLATLEHNGF 66
Query: 77 LCH 79
+
Sbjct: 67 VER 69
>gi|187920150|ref|YP_001889181.1| DEAD/H associated domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|187718588|gb|ACD19811.1| DEAD/H associated domain protein [Burkholderia phytofirmans PsJN]
Length = 1504
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 3/75 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
F+ + R R+ P+ +D I + A V
Sbjct: 1019 LYPPAEFAPALAAPKGYTESWNADDALIDVLRARLT---GFGPLPVDAIAEALKLPAASV 1075
Query: 65 YLVLLELDLAGRLCH 79
L L+ G +
Sbjct: 1076 EQSLTRLEAEGYVMR 1090
>gi|325290385|ref|YP_004266566.1| DNA protecting protein DprA [Syntrophobotulus glycolicus DSM 8271]
gi|324965786|gb|ADY56565.1| DNA protecting protein DprA [Syntrophobotulus glycolicus DSM 8271]
Length = 383
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
E +++ L++VP+HID + + + + L LLEL+L + P L
Sbjct: 327 TENLQLLDYLSDVPLHIDTLALNCSMSPHTIALGLLELELQEIVKQLPGQYYVLARR 383
>gi|193076054|gb|ABO10649.2| putative Rossmann-fold nucleotide-binding DNA uptake protein (Smf)
[Acinetobacter baumannii ATCC 17978]
Length = 383
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID ++ H I
Sbjct: 294 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLVIHHNI 353
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 354 PVSELTSSLMELELLGLCMQQSG 376
>gi|126640267|ref|YP_001083251.1| putative Rossmann-fold nucleotide-binding DNA uptake protein (Smf)
[Acinetobacter baumannii ATCC 17978]
Length = 362
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 3 HPQ--IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGI 59
HP+ IE +Q + + E + + QSL+ V +ID ++ H I
Sbjct: 273 HPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIPEHLIDLYQSLDWVGQNIDQLVIHHNI 332
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 333 PVSELTSSLMELELLGLCMQQSG 355
>gi|154250247|ref|YP_001411072.1| DNA protecting protein DprA [Fervidobacterium nodosum Rt17-B1]
gi|154154183|gb|ABS61415.1| DNA protecting protein DprA [Fervidobacterium nodosum Rt17-B1]
Length = 333
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 6/54 (11%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + ++L ++ + + + L+L ++L G + +G +
Sbjct: 280 DEKLLLEALETN-LNPEQLSEKISKPLSEILLLLTIMELKGLVYRVEDGTYARA 332
>gi|184158217|ref|YP_001846556.1| transcriptional regulator [Acinetobacter baumannii ACICU]
gi|239504245|ref|ZP_04663555.1| transcriptional regulator [Acinetobacter baumannii AB900]
gi|332875774|ref|ZP_08443573.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6014059]
gi|183209811|gb|ACC57209.1| Transcriptional regulator [Acinetobacter baumannii ACICU]
gi|322508538|gb|ADX03992.1| Transcriptional regulatory protein [Acinetobacter baumannii
1656-2]
gi|323518155|gb|ADX92536.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
gi|332736038|gb|EGJ67066.1| IclR helix-turn-helix protein [Acinetobacter baumannii 6014059]
Length = 232
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 26 THYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
H R+ L + + + ++ T + + +++ L+ G +
Sbjct: 6 PHPATSGNASADRLLTLLTAFRIGDKSLTLAELAERTELNKATIMRLIVSLEDFGFVNRL 65
Query: 81 PEGKVSLTMH 90
+G+ +L
Sbjct: 66 SDGRYTLASE 75
>gi|323143587|ref|ZP_08078264.1| transcriptional regulator, DeoR family [Succinatimonas hippei YIT
12066]
gi|322416650|gb|EFY07307.1| transcriptional regulator, DeoR family [Succinatimonas hippei YIT
12066]
Length = 251
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ +D+++ TG + L++LD G + G V+L +P+
Sbjct: 19 VTVDELVSITGASPATIRRELIKLDKEGAVYRVHGG-VTLNRFVPN 63
>gi|299770041|ref|YP_003732067.1| transcriptional regulator [Acinetobacter sp. DR1]
gi|298700129|gb|ADI90694.1| transcriptional regulator [Acinetobacter sp. DR1]
Length = 232
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 26 THYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
H R+ L + + + ++ T + + +++ L+ G +
Sbjct: 6 PHPATSGNASADRLLTLLTAFRIGDKSLTLAELAERTELNKATIMRLIVSLEDFGFVNRL 65
Query: 81 PEGKVSLTMH 90
+G+ +L
Sbjct: 66 SDGRYTLASE 75
>gi|253991649|ref|YP_003043005.1| DNA protecting protein DprA [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783099|emb|CAQ86264.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 361
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 19 HTKNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
H + P++ Q E + ++++ +D I + + V LLEL+L G+
Sbjct: 290 HMEGTKQEVKPQFEQTELPFADVLVNVSDEITSVDIIAQRSLLPINEVMAKLLELELLGK 349
Query: 77 LCHHPEGKVSLT 88
+ G V +
Sbjct: 350 VAVVAGGYVRVN 361
>gi|257463631|ref|ZP_05628022.1| Smf protein [Fusobacterium sp. D12]
gi|317061183|ref|ZP_07925668.1| SMF family protein [Fusobacterium sp. D12]
gi|313686859|gb|EFS23694.1| SMF family protein [Fusobacterium sp. D12]
Length = 283
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+I SL +D++ + L+EL++ G + GK
Sbjct: 225 PEVSSLSRKILASLLRE-KSLDELEKELLCSKQELLSQLMELEIEGWIKSISGGKFK 280
>gi|242399074|ref|YP_002994498.1| hypothetical protein TSIB_1095 [Thermococcus sibiricus MM 739]
gi|242265467|gb|ACS90149.1| hypothetical protein TSIB_1095 [Thermococcus sibiricus MM 739]
Length = 281
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ + L P++ +++ G V L+L ++ G + +G+
Sbjct: 222 SDEEKVIEILRERPMYQSELVKRLGFSKAKVSLLLKNMEKRGLIERVKDGR 272
>gi|325284173|ref|YP_004256714.1| DNA protecting protein DprA [Deinococcus proteolyticus MRP]
gi|324315982|gb|ADY27097.1| DNA protecting protein DprA [Deinococcus proteolyticus MRP]
Length = 374
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + + E+ +L P +DD+ TG+ +
Sbjct: 293 ETAADILTELGWEARAAGAGAGEDVPDLPPEQAATYSAL-TEPRTLDDLAALTGLGLAEL 351
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L+ L L+G +
Sbjct: 352 QTALMMLQLSGLAEDSGGRWLRR 374
>gi|163784068|ref|ZP_02179021.1| hypothetical protein HG1285_12267 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880667|gb|EDP74218.1| hypothetical protein HG1285_12267 [Hydrogenivirga sp. 128-5-R1-1]
Length = 69
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+I S+ N H D+++ I A + +L L+L +
Sbjct: 11 PDLDEIEKQILDSIENN-THFDNLLEKLSIPADQLITILFNLELKNLIK 58
>gi|218767196|ref|YP_002341708.1| DprA homolog [Neisseria meningitidis Z2491]
gi|121051204|emb|CAM07475.1| DprA homolog [Neisseria meningitidis Z2491]
Length = 395
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
Q+ + I + PIH D + + A +Y LLEL+L
Sbjct: 319 QTAYAPPPAAKMPSEAAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELEL 378
Query: 74 AGRLCHHPEGKVSL 87
G + P G+
Sbjct: 379 DGSVAAMPSGRYQR 392
>gi|224535809|ref|ZP_03676348.1| hypothetical protein BACCELL_00673 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522532|gb|EEF91637.1| hypothetical protein BACCELL_00673 [Bacteroides cellulosilyticus
DSM 14838]
Length = 81
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 35 ERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ RI + + +DDII H+G + VY L EL+ +G L
Sbjct: 11 DTQRIIDYIGTFANGVSVDDIILHSGADKLRVYPALFELEQSGWLEVL 58
>gi|70732836|ref|YP_262603.1| hypothetical protein PFL_5535 [Pseudomonas fluorescens Pf-5]
gi|68347135|gb|AAY94741.1| lhr [Pseudomonas fluorescens Pf-5]
Length = 1474
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ Q + P + R R+ P+ + I G+ A
Sbjct: 1003 LRALYPQAALQPALQPVPGFDQAWEAQPALVELIRARL---SGFAPLTLAQIAAPLGLPA 1059
Query: 62 PVVYLVLLELDLAGRLCHH---PEG 83
++ L++L+ G + P G
Sbjct: 1060 SSIHQALIQLESEGYVLRGRFSPGG 1084
>gi|271500974|ref|YP_003333999.1| DeoR family transcriptional regulator [Dickeya dadantii Ech586]
gi|270344529|gb|ACZ77294.1| transcriptional regulator, DeoR family [Dickeya dadantii Ech586]
Length = 258
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ D II H G+ V +L+L+ G L G V+ + P
Sbjct: 20 VSTDYIIQHLGVSRETVRRDVLKLEAQGVLRRVHGGIVATNVEPEPP 66
>gi|207723934|ref|YP_002254332.1| transcriptional regulatory dna-binding protein [Ralstonia
solanacearum MolK2]
gi|206589141|emb|CAQ36103.1| transcriptional regulatory dna-binding protein [Ralstonia
solanacearum MolK2]
Length = 118
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R + L P + ++ G+ P V L L+ +G + G+V
Sbjct: 16 ADANRRSMLAQLARGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEKAGRVR 70
>gi|296102350|ref|YP_003612496.1| hypothetical protein ECL_01995 [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295056809|gb|ADF61547.1| hypothetical protein ECL_01995 [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 253
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L + + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDYLKGHNLVTVDQLVAITDASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|154504527|ref|ZP_02041265.1| hypothetical protein RUMGNA_02031 [Ruminococcus gnavus ATCC 29149]
gi|153795009|gb|EDN77429.1| hypothetical protein RUMGNA_02031 [Ruminococcus gnavus ATCC 29149]
Length = 360
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + + P + + T + V +L+ L+L G + +
Sbjct: 303 LESPEYMVYSCVGLYPKSVGQLTEETKLRPEEVLKLLVSLELQGYIREISKNYY 356
>gi|229820997|ref|YP_002882523.1| DNA protecting protein DprA [Beutenbergia cavernae DSM 12333]
gi|229566910|gb|ACQ80761.1| DNA protecting protein DprA [Beutenbergia cavernae DSM 12333]
Length = 386
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLE 70
S + P + +L D + G+ P V L
Sbjct: 310 ESTPPEVAVGSGRPGGSPADLAPREALVWDALPRRAAAQPDSVARVAGLGVPEVRAALGR 369
Query: 71 LDLAGRLCHHPEG 83
L+LAG G
Sbjct: 370 LELAGHALRDAGG 382
>gi|296328244|ref|ZP_06870774.1| DNA protecting protein DprA [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154644|gb|EFG95431.1| DNA protecting protein DprA [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 288
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I SL++ ++D+I+ T IE + L+ L++ G + G+
Sbjct: 239 ILNSLSSE-KNLDNILIETKIEQTEILAELMTLEIMGVIKSIAGGRYK 285
>gi|290956075|ref|YP_003487257.1| DeoR family transcriptional regulator [Streptomyces scabiei
87.22]
gi|260645601|emb|CBG68692.1| putative DeoR-family transcriptional regulator [Streptomyces
scabiei 87.22]
Length = 256
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I ++L + P + D+ G+ + L+ L+ G L G V
Sbjct: 14 HQLILRALRSGGPAAVTDLSEQLGVSPATIRRDLVRLEEEGLLTRVHGGAV 64
>gi|19704403|ref|NP_603965.1| Smf protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19714659|gb|AAL95264.1| Smf protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 288
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I SL++ ++D+I+ T IE + L+ L++ G + G+
Sbjct: 239 ILNSLSSE-KNLDNILIETKIEQTEILAELMTLEIMGVIKSIAGGRYK 285
>gi|320532705|ref|ZP_08033496.1| divergent AAA domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135077|gb|EFW27234.1| divergent AAA domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 566
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 10 FFSSQSDTNHTKNINITHYPE--YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+S S + +I PE + SL + P I+ TG+ V
Sbjct: 481 VLASDSTRPTSDTTDIAVPPEISALSTNTPAVWASLEDGPRTRQQIVEATGLSPRQVTYA 540
Query: 68 LLELDLAGRLC 78
L L+ AG +
Sbjct: 541 LKHLEEAGFVE 551
>gi|313884573|ref|ZP_07818334.1| transcriptional regulator, DeoR family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620357|gb|EFR31785.1| transcriptional regulator, DeoR family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 264
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 33 QCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
I Q L +++ + G+ + L EL+ G L G VS
Sbjct: 9 DQRHQLILQELTKEGKVYVSQMAQEFGLTPETLRRDLSELEAGGLLERVHGGAVS----K 64
Query: 92 PSP 94
P+P
Sbjct: 65 PAP 67
>gi|329945985|ref|ZP_08293672.1| transcriptional regulator, DeoR family [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328528433|gb|EGF55411.1| transcriptional regulator, DeoR family [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 255
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 29 PEYTQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P R I ++L+ +H + + TG+ + L EL G + G +
Sbjct: 2 PNSPHERRRTILRALSPTTVHSVQALSRLTGVSVITIRRDLTELAHEGLVTRVHGGALR 60
>gi|325124150|gb|ADY83673.1| putative Rossmann-fold nucleotide-binding protein involved in DNA
uptake (smf) [Acinetobacter calcoaceticus PHEA-2]
Length = 377
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + SQ N T+ ++ PE + + QSL+ V +ID ++ H
Sbjct: 291 IIEDLALPTQWQSQQ-QNSTEQAVVSSTPEIPEHLIN-LYQSLDWVGQNIDQLVLHHSQP 348
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
+ L+EL+L G
Sbjct: 349 VAELTSSLMELELLGLCMQQSG 370
>gi|302348962|ref|YP_003816600.1| Putative transcriptional regulator, ArsR family [Acidilobus
saccharovorans 345-15]
gi|302329374|gb|ADL19569.1| Putative transcriptional regulator, ArsR family [Acidilobus
saccharovorans 345-15]
Length = 120
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PEGK 84
R +I L P ++DI V + +L+ AG + H P +
Sbjct: 34 ASESRAKILAILQKGPTDLEDIATLINQSKANVSSQIRKLEEAGIVRSHYVPGQR 88
>gi|296171497|ref|ZP_06852761.1| smf family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894059|gb|EFG73820.1| smf family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 127
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + + R+ ++L ++ + +G+ V L
Sbjct: 35 ELIGRIGELAVEEPRPATALDGLGDAERRVYEALPGRGAATVEQLAVASGLAPERVLGPL 94
Query: 69 LELDLAGRLCHHPE 82
L+LAG +
Sbjct: 95 AILELAGLVQRQEG 108
>gi|293608022|ref|ZP_06690325.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828595|gb|EFF86957.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122341|gb|ADY81864.1| IclR family transcriptional regulator, pca regulon regulatory
protein [Acinetobacter calcoaceticus PHEA-2]
Length = 232
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 26 THYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
H R+ L + + + ++ T + + +++ L+ G +
Sbjct: 6 PHPATSGNASADRLLTLLTAFRIGDKSLTLAELAERTELNKATIMRLIVSLEDFGFVNRL 65
Query: 81 PEGKVSLTMH 90
+G+ +L
Sbjct: 66 SDGRYTLASE 75
>gi|305681197|ref|ZP_07404004.1| DNA protecting protein DprA [Corynebacterium matruchotii ATCC
14266]
gi|305659402|gb|EFM48902.1| DNA protecting protein DprA [Corynebacterium matruchotii ATCC
14266]
Length = 405
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ +RI + PI D + H G+ + +LL L G +
Sbjct: 330 AATPVQKLSRNEMRIYDATGPRPIPTDQLAHDAGLTIGLTVHLLLSLAQQGLVER 384
>gi|296386494|ref|ZP_06875993.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa PAb1]
Length = 101
Score = 39.4 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 58 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 100
>gi|218129683|ref|ZP_03458487.1| hypothetical protein BACEGG_01262 [Bacteroides eggerthii DSM
20697]
gi|217988095|gb|EEC54419.1| hypothetical protein BACEGG_01262 [Bacteroides eggerthii DSM
20697]
Length = 74
Score = 39.4 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 35 ERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ +I + + +DDII ++G + VY L EL+ AG +
Sbjct: 7 DMQKIIDYIASFYGAVSVDDIIQNSGADKFRVYPALFELEQAGYIE 52
>gi|14591672|ref|NP_143759.1| hypothetical protein PH1930 [Pyrococcus horikoshii OT3]
gi|3258374|dbj|BAA31057.1| 185aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 185
Score = 39.4 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R++I + L P+ + +I G + VY + L+ AG +
Sbjct: 20 DPTRIKILELLREHPMSVSEIAERLGRDKSTVYRHIKALEDAGLVE 65
>gi|300813844|ref|ZP_07094149.1| DNA protecting protein DprA [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512031|gb|EFK39226.1| DNA protecting protein DprA [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 360
Score = 39.4 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
K H + + I + + I I++I + + + + +L +L+L +
Sbjct: 293 KKEEEKHIIKNLSEDENLILNLMEDGSITIEEICNKSNFDVIYINSLLTKLELKSAIE-- 350
Query: 81 PEGKVSLT 88
K+SLT
Sbjct: 351 ---KISLT 355
>gi|289450127|ref|YP_003475174.1| DNA protecting protein DprA [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184674|gb|ADC91099.1| DNA protecting protein DprA [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 416
Score = 39.4 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ P+ + Q+ T+ + PE +I + L +D++ +
Sbjct: 323 LIAPENLADEIERQTGTDLPLSAYKEKPPE-LSPLSEKILRELTVAERSVDELCLLLHCK 381
Query: 61 APVVYLVLLELDLAGRL-CHHPEGKVSL 87
+ L +L G + G+ ++
Sbjct: 382 LTELLPELSICELKGLIFSRL--GRYAV 407
>gi|225021105|ref|ZP_03710297.1| hypothetical protein CORMATOL_01117 [Corynebacterium matruchotii
ATCC 33806]
gi|224946105|gb|EEG27314.1| hypothetical protein CORMATOL_01117 [Corynebacterium matruchotii
ATCC 33806]
Length = 405
Score = 39.4 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ +RI + PI D + H G+ + +LL L G +
Sbjct: 330 AATPVQKLSRNEMRIYDATGPRPIPTDQLAHDAGLTIGLTVHLLLSLAQQGLVER 384
>gi|331091605|ref|ZP_08340439.1| hypothetical protein HMPREF9477_01082 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403362|gb|EGG82921.1| hypothetical protein HMPREF9477_01082 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 250
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R +I + L + ++++ G+ + LL+L G++ G V+
Sbjct: 7 REKITEFLYRYGSVQVEELAQELGVSTMTIRRDLLKLQEDGKIERCHGGAVA 58
>gi|320161008|ref|YP_004174232.1| ArsR family transcriptional regulator [Anaerolinea thermophila
UNI-1]
gi|319994861|dbj|BAJ63632.1| ArsR family transcriptional regulator [Anaerolinea thermophila
UNI-1]
Length = 194
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R+RI L N + ++ I + V L +L AG + PE
Sbjct: 25 DANRLRILGVLANQSMSVEQISTSLNLSPSTVSHHLAKLSEAGLVTAKPESYY 77
>gi|307297637|ref|ZP_07577443.1| DNA protecting protein DprA [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916897|gb|EFN47279.1| DNA protecting protein DprA [Thermotogales bacterium mesG1.Ag.4.2]
Length = 339
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ I+ + + R+ L N P+ +++ T + + + L L L G +
Sbjct: 273 EFPEISFEEPQSGNLQSRVLDLLGNGPLTFGELLLMTDFSSKDLIVELTNLQLGGYI 329
>gi|206563159|ref|YP_002233922.1| putative helicase [Burkholderia cenocepacia J2315]
gi|198039199|emb|CAR55163.1| putative helicase [Burkholderia cenocepacia J2315]
Length = 1503
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+HP + R R+ P+ +D I G+
Sbjct: 1019 LHPDARM---TPALKVPAACAQPWEADAALVDVIRARLT---GFGPLTLDAIAAPLGLPP 1072
Query: 62 PVVYLVLLELDLAGRLCH 79
+ L L+ G +
Sbjct: 1073 ASIATALAALEREGYVMR 1090
>gi|37528511|ref|NP_931856.1| hypothetical protein plu4694 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787949|emb|CAE17066.1| Smf protein [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 361
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 21 KNINITHYPEYTQCER--VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ P++ Q E + ++ +D I + + V LLEL+L G++
Sbjct: 292 ERTEEEVKPQFEQTELPFTDVLVNVGAEVTPVDIIAQRSSLPITEVMTKLLELELLGKVT 351
Query: 79 HHPEGKVSLT 88
G V +
Sbjct: 352 VVAGGYVRVN 361
>gi|33864461|ref|NP_896021.1| ArsR family regulatory protein [Prochlorococcus marinus str. MIT
9313]
gi|124024609|ref|YP_001018916.1| regulatory proteins, ArsR family protein [Prochlorococcus marinus
str. MIT 9303]
gi|33641241|emb|CAE22371.1| Bacterial regulatory proteins, ArsR family [Prochlorococcus
marinus str. MIT 9313]
gi|123964895|gb|ABM79651.1| Bacterial regulatory proteins, ArsR family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 101
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R+ + ++L + P+++ ++ T + +V L L +AG + PEG
Sbjct: 13 EPNRLAVLEALRSGPLNVTAVVEKTDLSQALVSKHLKLLTIAGVVHRRPEG 63
>gi|331082496|ref|ZP_08331621.1| hypothetical protein HMPREF0992_00545 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400474|gb|EGG80104.1| hypothetical protein HMPREF0992_00545 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 291
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ L+ P +I++I +++ + +LL+L+L G +
Sbjct: 235 SHEEMVYSCLDLQPKNIEEIFQEVPLKSGEIMEILLKLELEGLI 278
>gi|313773612|gb|EFS39578.1| DNA protecting protein DprA [Propionibacterium acnes HL074PA1]
Length = 377
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 7/70 (10%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + + + + ++L + +D++ G+ L L+
Sbjct: 297 LAPEPERPAGRSLPTDILDAIELAVHEALPAHGSCGLDELAVLAGVPVAQCSAALSVLEQ 356
Query: 74 AGRLCHHPEG 83
G +G
Sbjct: 357 LGMAACCLDG 366
>gi|260589066|ref|ZP_05854979.1| DNA protecting protein DprA [Blautia hansenii DSM 20583]
gi|260540486|gb|EEX21055.1| DNA protecting protein DprA [Blautia hansenii DSM 20583]
Length = 291
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ L+ P +I++I +++ + +LL+L+L G +
Sbjct: 235 SHEEMVYSCLDLQPKNIEEIFQEVPLKSGEIMEILLKLELEGLI 278
>gi|15891915|ref|NP_357587.1| ArsR family transcriptional regulator [Agrobacterium tumefaciens
str. C58]
gi|15160416|gb|AAK90372.1| transcriptional regulator, ArsR family [Agrobacterium tumefaciens
str. C58]
Length = 118
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R I L P + ++ TG+ P V L L+ AG + +G+V
Sbjct: 21 ADPTRRAILARLGGGPAPVMELSAPTGLRLPTVMRHLSVLEEAGLIITSKDGRVR 75
>gi|116621036|ref|YP_823192.1| ArsR family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116224198|gb|ABJ82907.1| transcriptional regulator, ArsR family [Candidatus Solibacter
usitatus Ellin6076]
Length = 111
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R I + L + PI + + + V L L+ +G + G+V P
Sbjct: 17 DPTRRAIMEKLGHGPISVSRLAEPLDMTLAAVVQHLQVLEESGLVQTEKAGRVRTCRIEP 76
Query: 93 S 93
+
Sbjct: 77 A 77
>gi|90415411|ref|ZP_01223345.1| DNA processing chain A [marine gamma proteobacterium HTCC2207]
gi|90332734|gb|EAS47904.1| DNA processing chain A [marine gamma proteobacterium HTCC2207]
Length = 360
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ ++TH + + V++ L P +D +I + +L+ L
Sbjct: 303 SATEPPQAPFSVTHGALNLEADEVQLLSHLGYEPTDMDSLISDGFFSVSELSRLLVAL 360
>gi|83748334|ref|ZP_00945358.1| Transcriptional regulator, ArsR family [Ralstonia solanacearum
UW551]
gi|207742835|ref|YP_002259227.1| transcriptional regulatory dna-binding protein [Ralstonia
solanacearum IPO1609]
gi|300703740|ref|YP_003745342.1| transcriptional regulatory, arsr family [Ralstonia solanacearum
CFBP2957]
gi|83724956|gb|EAP72110.1| Transcriptional regulator, ArsR family [Ralstonia solanacearum
UW551]
gi|206594229|emb|CAQ61156.1| transcriptional regulatory dna-binding protein [Ralstonia
solanacearum IPO1609]
gi|299071403|emb|CBJ42722.1| putative transcriptional regulatory, arsR family [Ralstonia
solanacearum CFBP2957]
Length = 118
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R + L P + ++ G+ P V L L+ +G + G+V
Sbjct: 16 ADANRRSMLAQLARGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEKAGRVRTCRIE 75
Query: 92 PS 93
P
Sbjct: 76 PQ 77
>gi|329848068|ref|ZP_08263096.1| putative aga operon transcriptional repressor [Asticcacaulis
biprosthecum C19]
gi|328843131|gb|EGF92700.1| putative aga operon transcriptional repressor [Asticcacaulis
biprosthecum C19]
Length = 280
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 37 VRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
RI L+ +D++ G+ + L ELD G L G +
Sbjct: 8 KRIIDELSPDRVTSVDELTERLGVSPATIRRDLNELDGLGYLLRVRGGAMR 58
>gi|330946480|gb|EGH47521.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 123
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ + + + +++ TG+ + +++ L+ G + +G+ L
Sbjct: 10 IGDSALSLVELVERTGLIKSTIMRLMVSLETYGFVNRLADGRYMLASE 57
>gi|327189425|gb|EGE56589.1| ArsR family transcriptional regulator [Rhizobium etli CNPAF512]
Length = 137
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + +I + P V L L+ AG +
Sbjct: 43 SAPRRKILAYLSASGLTAGEIAERFSMSKPAVSQHLSILETAGLIRR 89
>gi|169797635|ref|YP_001715428.1| putative Rossmann-fold nucleotide-binding protein involved in DNA
uptake (Smf) [Acinetobacter baumannii AYE]
gi|213155571|ref|YP_002317616.1| DNA protecting protein DprA [Acinetobacter baumannii AB0057]
gi|215484989|ref|YP_002327230.1| DNA protecting protein DprA [Acinetobacter baumannii AB307-0294]
gi|301346866|ref|ZP_07227607.1| DNA protecting protein DprA [Acinetobacter baumannii AB056]
gi|301512294|ref|ZP_07237531.1| DNA protecting protein DprA [Acinetobacter baumannii AB058]
gi|301594508|ref|ZP_07239516.1| DNA protecting protein DprA [Acinetobacter baumannii AB059]
gi|169150562|emb|CAM88471.1| putative Rossmann-fold nucleotide-binding protein involved in DNA
uptake (Smf) [Acinetobacter baumannii AYE]
gi|213054731|gb|ACJ39633.1| DNA protecting protein DprA [Acinetobacter baumannii AB0057]
gi|213988661|gb|ACJ58960.1| DNA protecting protein DprA [Acinetobacter baumannii AB307-0294]
Length = 376
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ QSL+ V +ID ++ H + + L+EL+L G
Sbjct: 326 LYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSG 369
>gi|301025182|ref|ZP_07188755.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 69-1]
gi|331656702|ref|ZP_08357664.1| GlpR protein [Escherichia coli TA206]
gi|300396182|gb|EFJ79720.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 69-1]
gi|331054950|gb|EGI26959.1| GlpR protein [Escherichia coli TA206]
Length = 253
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ T + L++LD G + G V+L +P+
Sbjct: 8 EQIMDYLKSHNLVTVDELVAVTNASPATIRRDLIKLDEQGVISRTHGG-VTLNRFIPT 64
>gi|294785361|ref|ZP_06750649.1| DNA protecting protein DprA [Fusobacterium sp. 3_1_27]
gi|294487075|gb|EFG34437.1| DNA protecting protein DprA [Fusobacterium sp. 3_1_27]
Length = 288
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I SL++ ++D+I+ T IE + L+ L++ G + G+
Sbjct: 239 ILNSLSSE-KNLDNILIETKIEQTEILAELMTLEIMGAIKSIAGGRYK 285
>gi|328957780|ref|YP_004375166.1| uncharacterized HTH-type transcriptional regulator FruR
[Carnobacterium sp. 17-4]
gi|328674104|gb|AEB30150.1| uncharacterized HTH-type transcriptional regulator FruR
[Carnobacterium sp. 17-4]
Length = 245
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 36 RVRIKQSLNNVPIHI-DDII-HHTGIEAPVVYLVLLELDLAGRLCHHPEG---KVSLTMH 90
+ I Q LN I I D++ +G+ + L +L+ AG + P G S +
Sbjct: 7 KKAILQKLNEQDIVILDELQNVLSGVSVSTIRRDLKDLERAGHVTVLPGGAAKLFSRSTD 66
Query: 91 LP 92
+P
Sbjct: 67 VP 68
>gi|320335675|ref|YP_004172386.1| DNA protecting protein DprA [Deinococcus maricopensis DSM 21211]
gi|319756964|gb|ADV68721.1| DNA protecting protein DprA [Deinococcus maricopensis DSM 21211]
Length = 358
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ P ++ R+ +L P +DD++ +G + LL L LAG + G+
Sbjct: 299 PSRAPLDLPDDQARVLAAL-TGPRTLDDVLSVSG--VADAHTALLMLQLAGLVE-ESGGR 354
Query: 85 VSL 87
+
Sbjct: 355 YAR 357
>gi|307287969|ref|ZP_07568002.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0109]
gi|306501114|gb|EFM70421.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX0109]
gi|315163791|gb|EFU07808.1| DeoR-like helix-turn-helix protein [Enterococcus faecalis TX1302]
Length = 252
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ GRL G SL + P
Sbjct: 26 EIMERLNVSDMTVRRDLTELEATGRLKRVHGGASSLNTYRP 66
>gi|258511359|ref|YP_003184793.1| DNA protecting protein DprA [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478085|gb|ACV58404.1| DNA protecting protein DprA [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 366
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 4 PQIEQ-NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P ++ + F +D + I + E R + PI ++ ++
Sbjct: 279 PLVDPNDLFPEPADVEIAGSWKIPAHLEPCYRALAR------HQPIRAGELAAVADLDLG 332
Query: 63 VVYLVLLELDLAGRLCHHPEGKVSL 87
V+ LLE++LA + HP+G +
Sbjct: 333 YVFGALLEMELACMVTRHPDGTYHI 357
>gi|218514727|ref|ZP_03511567.1| filamentation induced by cAMP protein Fic [Rhizobium etli 8C-3]
Length = 86
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ +RI P + + ++ TG+ AP V L +L+ G +
Sbjct: 8 EDRERITSESDRAGSALRIHDLFQQNPFMTANQLVQQTGLSAPTVNAALTDLERFGVVEE 67
Query: 80 HPEGKVSLTMHLPS 93
K LP+
Sbjct: 68 VTGRKRGRVFELPA 81
>gi|303249954|ref|ZP_07336156.1| protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303253126|ref|ZP_07339275.1| protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307248764|ref|ZP_07530777.1| hypothetical protein appser2_17300 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307253383|ref|ZP_07535254.1| hypothetical protein appser6_18770 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307262202|ref|ZP_07543852.1| hypothetical protein appser12_17470 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|302647808|gb|EFL78015.1| protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302651017|gb|EFL81171.1| protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306854691|gb|EFM86881.1| hypothetical protein appser2_17300 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306859062|gb|EFM91104.1| hypothetical protein appser6_18770 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306868076|gb|EFM99902.1| hypothetical protein appser12_17470 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 384
Score = 39.4 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +N K ++ + +I ++ PI IDD+ T +E
Sbjct: 301 PQAVENAQFFTKADVPNKVNHLAKKLPELTDCQQQIVAHISLEPISIDDLAKATALEVDT 360
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
+ + LL L+L + G V
Sbjct: 361 LLVELLGLELLSVIKQVSGGYVR 383
>gi|332852663|ref|ZP_08434317.1| DNA protecting protein DprA [Acinetobacter baumannii 6013150]
gi|332869379|ref|ZP_08438757.1| DNA protecting protein DprA [Acinetobacter baumannii 6013113]
gi|332729131|gb|EGJ60478.1| DNA protecting protein DprA [Acinetobacter baumannii 6013150]
gi|332732797|gb|EGJ64013.1| DNA protecting protein DprA [Acinetobacter baumannii 6013113]
Length = 383
Score = 39.4 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ QSL+ V +ID ++ H + + L+EL+L G
Sbjct: 333 LYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSG 376
>gi|254303090|ref|ZP_04970448.1| possible SMF family DNA processing protein [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323282|gb|EDK88532.1| possible SMF family DNA processing protein [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 284
Score = 39.4 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I SL++ ++D+I+ T IE + L+ L++ G + G+
Sbjct: 235 ILNSLSSE-KNLDNILMETKIEQTEILAELITLEIMGAIKSIAGGRYK 281
>gi|255526680|ref|ZP_05393584.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|296185600|ref|ZP_06854009.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|255509612|gb|EET85948.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
gi|296049728|gb|EFG89153.1| DNA protecting protein DprA [Clostridium carboxidivorans P7]
Length = 364
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
I ++N P I+ + + V L ++L G++ SL
Sbjct: 312 EKIILNAINKEPKTIEQLQVIVNDDKVDVLEKLSLMELDGKIKAFQGKFYSLA 364
>gi|254515966|ref|ZP_05128026.1| peptide deformylase, DNA processing protein [gamma proteobacterium
NOR5-3]
gi|219675688|gb|EED32054.1| peptide deformylase, DNA processing protein [gamma proteobacterium
NOR5-3]
Length = 371
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+I Q L + + + D+ TG++ + VL +L++ G LC
Sbjct: 315 QILQLLGDTGLSLGDLRQSTGMQTSELLAVLGDLEIQGWLCTIDGRY 361
>gi|26246655|ref|NP_752695.1| putative transcriptional regulator [Escherichia coli CFT073]
gi|91209721|ref|YP_539707.1| putative transcriptional regulator [Escherichia coli UTI89]
gi|110640898|ref|YP_668626.1| DeoR family transcriptional regulator [Escherichia coli 536]
gi|117622887|ref|YP_851800.1| putative transcriptional regulator [Escherichia coli APEC O1]
gi|191173957|ref|ZP_03035475.1| DeoR-family transcriptional regulator [Escherichia coli F11]
gi|215485710|ref|YP_002328141.1| predicted transcriptional regulator, DeoR family [Escherichia
coli O127:H6 str. E2348/69]
gi|218557607|ref|YP_002390520.1| transcriptional regulator, DeoR-family [Escherichia coli S88]
gi|227884346|ref|ZP_04002151.1| DeoR family transcriptional regulator [Escherichia coli 83972]
gi|237707353|ref|ZP_04537834.1| DeoR family transcriptional regulator [Escherichia sp. 3_2_53FAA]
gi|300989960|ref|ZP_07179036.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 45-1]
gi|300996586|ref|ZP_07181480.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 200-1]
gi|301046008|ref|ZP_07193189.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 185-1]
gi|306812899|ref|ZP_07447092.1| putative transcriptional regulator, DeoR-family protein
[Escherichia coli NC101]
gi|312965120|ref|ZP_07779357.1| deoR-like helix-turn-helix domain protein [Escherichia coli
2362-75]
gi|331645836|ref|ZP_08346939.1| GlpR protein [Escherichia coli M605]
gi|26107054|gb|AAN79238.1|AE016757_142 Putative transcriptional regulator [Escherichia coli CFT073]
gi|91071295|gb|ABE06176.1| putative transcriptional regulator [Escherichia coli UTI89]
gi|110342490|gb|ABG68727.1| putative regulatory protein, DeoR family [Escherichia coli 536]
gi|115512011|gb|ABJ00086.1| putative transcriptional regulator [Escherichia coli APEC O1]
gi|190905733|gb|EDV65354.1| DeoR-family transcriptional regulator [Escherichia coli F11]
gi|215263782|emb|CAS08118.1| predicted transcriptional regulator, DeoR family [Escherichia
coli O127:H6 str. E2348/69]
gi|218364376|emb|CAR02055.1| putative transcriptional regulator, DeoR-family [Escherichia coli
S88]
gi|222032429|emb|CAP75168.1| transcriptional regulator [Escherichia coli LF82]
gi|226898563|gb|EEH84822.1| DeoR family transcriptional regulator [Escherichia sp. 3_2_53FAA]
gi|227838432|gb|EEJ48898.1| DeoR family transcriptional regulator [Escherichia coli 83972]
gi|281177827|dbj|BAI54157.1| putative transcriptional regulator [Escherichia coli SE15]
gi|294491466|gb|ADE90222.1| transcriptional regulator, DeoR family [Escherichia coli IHE3034]
gi|300301981|gb|EFJ58366.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 185-1]
gi|300304483|gb|EFJ59003.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 200-1]
gi|300407235|gb|EFJ90773.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 45-1]
gi|305853662|gb|EFM54101.1| putative transcriptional regulator, DeoR-family protein
[Escherichia coli NC101]
gi|307552540|gb|ADN45315.1| putative transcriptional regulator [Escherichia coli ABU 83972]
gi|307627893|gb|ADN72197.1| putative transcriptional regulator, DeoR-family protein
[Escherichia coli UM146]
gi|312290211|gb|EFR18094.1| deoR-like helix-turn-helix domain protein [Escherichia coli
2362-75]
gi|312945217|gb|ADR26044.1| putative transcriptional regulator, DeoR-family protein
[Escherichia coli O83:H1 str. NRG 857C]
gi|315287111|gb|EFU46525.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 110-3]
gi|315292053|gb|EFU51405.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 153-1]
gi|315299222|gb|EFU58476.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 16-3]
gi|323952751|gb|EGB48619.1| deoR family protein regulatory protein [Escherichia coli H252]
gi|323958432|gb|EGB54138.1| deoR family protein regulatory protein [Escherichia coli H263]
gi|324006299|gb|EGB75518.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 57-2]
gi|324010406|gb|EGB79625.1| DeoR-like helix-turn-helix protein [Escherichia coli MS 60-1]
gi|330910437|gb|EGH38947.1| glycerol-3-phosphate regulon repressor [Escherichia coli AA86]
gi|331044588|gb|EGI16715.1| GlpR protein [Escherichia coli M605]
Length = 253
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ T + L++LD G + G V+L +P+
Sbjct: 8 EQIMDYLKSHNLVTVDELVAVTNASPATIRRDLIKLDEQGVISRTHGG-VTLNRFIPT 64
>gi|94310737|ref|YP_583947.1| ArsR family transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93354589|gb|ABF08678.1| transcriptional regulator, ArsR family [Cupriavidus metallidurans
CH34]
Length = 121
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 22/68 (32%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ R + L P+ + ++ + P V L L+ AG + G+
Sbjct: 12 DATFQALADTTRRTMLAQLARGPLSVTELARPLAMSLPAVMQHLSVLEQAGLVRTEKVGR 71
Query: 85 VSLTMHLP 92
V P
Sbjct: 72 VRTCTMAP 79
>gi|295113183|emb|CBL31820.1| Transcriptional regulators of sugar metabolism [Enterococcus sp.
7L76]
Length = 219
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I+ + V L EL+ AGRL G SL + P
Sbjct: 24 EIMGRLNVSDMTVRRDLTELEAAGRLKRVHGGASSLNTYRP 64
>gi|257465867|ref|ZP_05630178.1| Smf protein [Fusobacterium gonidiaformans ATCC 25563]
gi|315917024|ref|ZP_07913264.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313690899|gb|EFS27734.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 283
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E +I SL +DD+ + V+ L++L++ G + GK
Sbjct: 228 SQEAQKILVSLIRE-KSLDDLEKELFLSKQVLLSQLMQLEIEGWIKSVSGGKFK 280
>gi|257452341|ref|ZP_05617640.1| Smf protein [Fusobacterium sp. 3_1_5R]
gi|317058884|ref|ZP_07923369.1| SMF family protein [Fusobacterium sp. 3_1_5R]
gi|313684560|gb|EFS21395.1| SMF family protein [Fusobacterium sp. 3_1_5R]
Length = 283
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E +I SL +DD+ + V+ L++L++ G + GK
Sbjct: 228 SQEAQKILVSLIRE-KSLDDLEKELFLSKQVLLSQLMQLEIEGWIKSVSGGKFK 280
>gi|262374666|ref|ZP_06067939.1| DNA protecting protein DprA [Acinetobacter junii SH205]
gi|262310456|gb|EEY91547.1| DNA protecting protein DprA [Acinetobacter junii SH205]
Length = 375
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 8/79 (10%), Positives = 22/79 (27%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
++ + + + Q+L+ + +D + +
Sbjct: 292 EDLALPTHWQTQQHTKDAVEQHSTLPPHLISLYQNLDWIGQDLDLLSQRYPAPISEITSQ 351
Query: 68 LLELDLAGRLCHHPEGKVS 86
L+EL+L G +
Sbjct: 352 LMELELLGLCIQQGGRYLR 370
>gi|297203712|ref|ZP_06921109.1| DeoR family transcriptional regulator [Streptomyces sviceus ATCC
29083]
gi|297148482|gb|EDY55795.2| DeoR family transcriptional regulator [Streptomyces sviceus ATCC
29083]
Length = 257
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
I ++L + P + D+ G+ + L++L+ G L G V P
Sbjct: 10 HQLILRALRSGGPASVTDLSEQLGVSPATIRRDLVKLEEDGLLTRVHGGAVVEEGDQP 67
>gi|251793282|ref|YP_003008010.1| DNA-processing chain A [Aggregatibacter aphrophilus NJ8700]
gi|247534677|gb|ACS97923.1| protein smf (DNA-processing chain A) [Aggregatibacter aphrophilus
NJ8700]
Length = 371
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHY---PEYTQCERVRIKQSLNNVPIHIDDIIHHT 57
++ + + T + PE ++ ++ PI ID+++
Sbjct: 282 ILENLSPSPIWKKRPQNLPHFTSRTTTHTQLPEPVTPSYPQLYDTIGYSPISIDNLVAKL 341
Query: 58 GIEAP 62
G+
Sbjct: 342 GLSVD 346
>gi|83589472|ref|YP_429481.1| GntR family transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83572386|gb|ABC18938.1| transcriptional regulator, GntR family [Moorella thermoacetica
ATCC 39073]
Length = 254
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R I +++ P+ ++++ G+ + L L+ G L G V
Sbjct: 7 RKIIIDKISSGMPLSVNELSRELGVSPMTIRRDLETLEREGFLTRTHGGAV 57
>gi|15921674|ref|NP_377343.1| hypothetical protein ST1386 [Sulfolobus tokodaii str. 7]
gi|15622461|dbj|BAB66452.1| 300aa long conserved hypothetical protein [Sulfolobus tokodaii
str. 7]
Length = 300
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 32 TQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ RI + L +P +++ +G+ + +L EL+ G +
Sbjct: 1 MSDSKSRIIEILKKFGELPQS--ELVRISGLSKSRLSEILSELEKQGLIER 49
>gi|116750394|ref|YP_847081.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophobacter
fumaroxidans MPOB]
gi|116750436|ref|YP_847123.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophobacter
fumaroxidans MPOB]
gi|116699458|gb|ABK18646.1| methyl-viologen-reducing hydrogenase, delta subunit
[Syntrophobacter fumaroxidans MPOB]
gi|116699500|gb|ABK18688.1| methyl-viologen-reducing hydrogenase, delta subunit
[Syntrophobacter fumaroxidans MPOB]
Length = 252
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ I + L P+ + I +G+ + L+L E++ AG + H
Sbjct: 194 KALILECLREGPLSVRQIAARSGLGVYEISLLLSEVERAGLVDLH 238
>gi|312126810|ref|YP_003991684.1| DNA protecting protein dpra [Caldicellulosiruptor hydrothermalis
108]
gi|311776829|gb|ADQ06315.1| DNA protecting protein DprA [Caldicellulosiruptor hydrothermalis
108]
Length = 365
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+ + L+ N +H++ +I TG + + ++ L++ ++ +S
Sbjct: 314 RLIKLLDENGEMHVESLIALTGWDPGKIASLITSLEIKSKVVRDRGNIIS 363
>gi|255972459|ref|ZP_05423045.1| lactose phosphotransferase system repressor [Enterococcus
faecalis T1]
gi|255963477|gb|EET95953.1| lactose phosphotransferase system repressor [Enterococcus
faecalis T1]
Length = 225
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 54 IHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+ + V L EL++AGRL G SL + P
Sbjct: 1 MERLNVSDMTVRRDLTELEVAGRLKRVHGGASSLNTYRP 39
>gi|327194450|gb|EGE61310.1| filamentation induced by cAMP protein Fic [Rhizobium etli CNPAF512]
Length = 306
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ +RI P + + ++ TG+ AP V L +L+ G +
Sbjct: 185 EDRERITSESDRAGSALRIHDLFQQNPFMTANQLVQQTGLSAPTVNAALTDLERFGVVEE 244
Query: 80 HPE---GKV 85
G+V
Sbjct: 245 VTGRKRGRV 253
>gi|307257797|ref|ZP_07539554.1| hypothetical protein appser10_17820 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306863703|gb|EFM95629.1| hypothetical protein appser10_17820 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 384
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +N K ++ + +I ++ PI IDD+ T +E
Sbjct: 301 PQAVENAQFFTKADVPNKVNHLAKKLPELTDCQQQIVAHISLEPISIDDLAKATALEVDT 360
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
+ + LL L+L + G V
Sbjct: 361 LLVELLGLELLSVIKQVSGGYVR 383
>gi|330806736|ref|YP_004351198.1| hypothetical protein PSEBR_a72 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327374844|gb|AEA66194.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 364
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + P + + L+ P+ + + +G P V L EL++ GR
Sbjct: 301 QRLPPASEPVPVT---HPLLRLLHAAPLSSEALADASGWGLPKVLAALTELEMEGRATCD 357
Query: 81 PEGKVSL 87
+
Sbjct: 358 NGRWFAR 364
>gi|254248593|ref|ZP_04941913.1| Helicase [Burkholderia cenocepacia PC184]
gi|124875094|gb|EAY65084.1| Helicase [Burkholderia cenocepacia PC184]
Length = 1518
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 11 FSSQSDTNHTKNINITHYPE-YTQCERVRIKQS--LNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + V + ++ P+ +D I G+ +
Sbjct: 1034 LHPDARATPALKVPAACAQPWEADAALVDVIRARLTGFGPLTLDAIAAPLGLPPASIATA 1093
Query: 68 LLELDLAGRLCH 79
L L+ G +
Sbjct: 1094 LAALEREGYVMR 1105
>gi|254430989|ref|ZP_05044692.1| SMF family protein [Cyanobium sp. PCC 7001]
gi|197625442|gb|EDY38001.1| SMF family protein [Cyanobium sp. PCC 7001]
Length = 354
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 1/78 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + QSL ++ + A V
Sbjct: 272 LDADDLIRQLGPGPRPVASAAGRSRGAASEADAALLQSLEGGA-SLEQLCLALEQPAAQV 330
Query: 65 YLVLLELDLAGRLCHHPE 82
LL L+LAG + P
Sbjct: 331 ATRLLALELAGLVQAEPG 348
>gi|299066433|emb|CBJ37618.1| putative transcriptional regulatory, arsR family [Ralstonia
solanacearum CMR15]
Length = 118
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R + L P + ++ G+ P V L L+ +G + G+V
Sbjct: 16 ADATRRSMLAQLTRGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEKTGRVRTCRIE 75
Query: 92 PS 93
P
Sbjct: 76 PQ 77
>gi|227872632|ref|ZP_03990964.1| SMF family DNA processing protein [Oribacterium sinus F0268]
gi|227841519|gb|EEJ51817.1| SMF family DNA processing protein [Oribacterium sinus F0268]
Length = 300
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
E+ RI +L H + + +++ L+EL++ G
Sbjct: 240 EKRRIYLALGFESKHFQSLQEELKLPNYMLHRYLIELEVEGYCECVQAAYYRR 292
>gi|297581918|ref|ZP_06943838.1| smf/DprA family protein [Vibrio cholerae RC385]
gi|297533785|gb|EFH72626.1| smf/DprA family protein [Vibrio cholerae RC385]
Length = 371
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|269103774|ref|ZP_06156471.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163672|gb|EEZ42168.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Photobacterium damselae subsp. damselae CIP
102761]
Length = 364
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERV----RIKQSLNNVPIHIDDIIHHTGIE 60
+ Q+ F + + ++ + I +D + + +
Sbjct: 275 ESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSEVIPVDVLAERSQMP 334
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVS 86
V LLEL+L G + P G +
Sbjct: 335 VHDVMTQLLELELLGLVTALPGGYIR 360
>gi|227080285|ref|YP_002808836.1| smf protein [Vibrio cholerae M66-2]
gi|298501231|ref|ZP_07011030.1| smf/DprA family protein [Vibrio cholerae MAK 757]
gi|227008173|gb|ACP04385.1| smf protein [Vibrio cholerae M66-2]
gi|297540103|gb|EFH76165.1| smf/DprA family protein [Vibrio cholerae MAK 757]
Length = 371
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|327334524|gb|EGE76235.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL097PA1]
Length = 268
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVELTGVSAMTIYRDLAILESSGVLQRHRGRVVAVA 69
>gi|170735723|ref|YP_001776983.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169817911|gb|ACA92493.1| DEAD/H associated domain protein [Burkholderia cenocepacia MC0-3]
Length = 1518
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 11 FSSQSDTNHTKNINITHYPE-YTQCERVRIKQS--LNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + V + ++ P+ +D I G+ +
Sbjct: 1034 LHPDARATPALKVPAACAQPWEADAALVDVIRARLTGFGPLTLDAIAAPLGLPPASIATA 1093
Query: 68 LLELDLAGRLCH 79
L L+ G +
Sbjct: 1094 LAALEREGYVMR 1105
>gi|15640080|ref|NP_229707.1| smf protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587264|ref|ZP_01677037.1| Smf/DprA family protein [Vibrio cholerae 2740-80]
gi|121727882|ref|ZP_01680941.1| Smf/DprA family protein [Vibrio cholerae V52]
gi|147675247|ref|YP_001218364.1| Smf/DprA family protein [Vibrio cholerae O395]
gi|153817608|ref|ZP_01970275.1| Smf/DprA family protein [Vibrio cholerae NCTC 8457]
gi|153821944|ref|ZP_01974611.1| Smf/DprA family protein [Vibrio cholerae B33]
gi|229508333|ref|ZP_04397837.1| hypothetical protein VCF_003568 [Vibrio cholerae BX 330286]
gi|229508828|ref|ZP_04398319.1| hypothetical protein VCE_000233 [Vibrio cholerae B33]
gi|229517099|ref|ZP_04406545.1| hypothetical protein VCC_001120 [Vibrio cholerae RC9]
gi|229606608|ref|YP_002877256.1| hypothetical protein VCD_001517 [Vibrio cholerae MJ-1236]
gi|254851613|ref|ZP_05240963.1| smf/DprA family protein [Vibrio cholerae MO10]
gi|255746770|ref|ZP_05420716.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholera CIRS 101]
gi|262155851|ref|ZP_06028973.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae INDRE 91/1]
gi|262166894|ref|ZP_06034615.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae RC27]
gi|9654442|gb|AAF93226.1| smf protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121548510|gb|EAX58566.1| Smf/DprA family protein [Vibrio cholerae 2740-80]
gi|121629826|gb|EAX62241.1| Smf/DprA family protein [Vibrio cholerae V52]
gi|126511876|gb|EAZ74470.1| Smf/DprA family protein [Vibrio cholerae NCTC 8457]
gi|126520564|gb|EAZ77787.1| Smf/DprA family protein [Vibrio cholerae B33]
gi|146317130|gb|ABQ21669.1| Smf/DprA family protein [Vibrio cholerae O395]
gi|227011949|gb|ACP08159.1| smf protein [Vibrio cholerae O395]
gi|229346162|gb|EEO11134.1| hypothetical protein VCC_001120 [Vibrio cholerae RC9]
gi|229354103|gb|EEO19035.1| hypothetical protein VCE_000233 [Vibrio cholerae B33]
gi|229354606|gb|EEO19528.1| hypothetical protein VCF_003568 [Vibrio cholerae BX 330286]
gi|229369263|gb|ACQ59686.1| hypothetical protein VCD_001517 [Vibrio cholerae MJ-1236]
gi|254847318|gb|EET25732.1| smf/DprA family protein [Vibrio cholerae MO10]
gi|255735527|gb|EET90926.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholera CIRS 101]
gi|262024665|gb|EEY43345.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae RC27]
gi|262030303|gb|EEY48945.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae INDRE 91/1]
Length = 371
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|149925346|ref|ZP_01913610.1| SMF protein [Limnobacter sp. MED105]
gi|149825463|gb|EDM84671.1| SMF protein [Limnobacter sp. MED105]
Length = 362
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 25/79 (31%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
HT+ E R+ Q L + P+H D + G+ L
Sbjct: 280 VLQEDDSDCHTEMTCTIDTDAEPDEELGRVLQYLGHDPVHTDTLARQLGLGTEDTLAALT 339
Query: 70 ELDLAGRLCHHPEGKVSLT 88
EL+L G + + +
Sbjct: 340 ELELLGLVLSESGNRWVRS 358
>gi|314969118|gb|EFT13216.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA1]
Length = 268
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVESTGVSAMTIYRDLAILESSGVLQRHRGRVVAVA 69
>gi|251794253|ref|YP_003008984.1| DeoR family transcriptional regulator [Paenibacillus sp. JDR-2]
gi|247541879|gb|ACS98897.1| transcriptional regulator, DeoR family [Paenibacillus sp. JDR-2]
Length = 258
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 36 RVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R RI + L ++++++ + + L +L+ +G+L G V L +
Sbjct: 9 RNRILEMLGIKGKVNVNELARQFEVTTETIRRDLDDLEKSGKLKKVYGGAVKLKTEIEP 67
>gi|331697351|ref|YP_004333590.1| AsnC family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326952040|gb|AEA25737.1| transcriptional regulator, AsnC family [Pseudonocardia
dioxanivorans CB1190]
Length = 163
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
I + L + + D I G+ V + E + AG +
Sbjct: 2 REILELLERDSALSHDTIATMLGLPVEEVSARIAEWEAAGVIRR 45
>gi|229515913|ref|ZP_04405370.1| hypothetical protein VCB_003571 [Vibrio cholerae TMA 21]
gi|229347013|gb|EEO11975.1| hypothetical protein VCB_003571 [Vibrio cholerae TMA 21]
Length = 371
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|153212925|ref|ZP_01948519.1| Smf/DprA family protein [Vibrio cholerae 1587]
gi|124116151|gb|EAY34971.1| Smf/DprA family protein [Vibrio cholerae 1587]
Length = 371
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|229524950|ref|ZP_04414355.1| hypothetical protein VCA_002559 [Vibrio cholerae bv. albensis
VL426]
gi|229338531|gb|EEO03548.1| hypothetical protein VCA_002559 [Vibrio cholerae bv. albensis
VL426]
Length = 371
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|153802768|ref|ZP_01957354.1| Smf/DprA family protein [Vibrio cholerae MZO-3]
gi|124121681|gb|EAY40424.1| Smf/DprA family protein [Vibrio cholerae MZO-3]
Length = 371
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|302555417|ref|ZP_07307759.1| DeoR family transcriptional regulator [Streptomyces
viridochromogenes DSM 40736]
gi|302473035|gb|EFL36128.1| DeoR family transcriptional regulator [Streptomyces
viridochromogenes DSM 40736]
Length = 254
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
I ++L + P + D+ G+ + L++L+ G L G V P
Sbjct: 7 HQLILRALRSGGPAAVTDLSEQLGVSPATIRRDLVKLEEDGLLTRVHGGAVVEEGDQP 64
>gi|153826433|ref|ZP_01979100.1| Smf/DprA family protein [Vibrio cholerae MZO-2]
gi|149739819|gb|EDM54014.1| Smf/DprA family protein [Vibrio cholerae MZO-2]
Length = 371
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|153830116|ref|ZP_01982783.1| Smf/DprA family protein [Vibrio cholerae 623-39]
gi|229530166|ref|ZP_04419555.1| hypothetical protein VCG_003277 [Vibrio cholerae 12129(1)]
gi|254225572|ref|ZP_04919181.1| Smf/DprA family protein [Vibrio cholerae V51]
gi|254291091|ref|ZP_04961888.1| Smf/DprA family protein [Vibrio cholerae AM-19226]
gi|125621892|gb|EAZ50217.1| Smf/DprA family protein [Vibrio cholerae V51]
gi|148874380|gb|EDL72515.1| Smf/DprA family protein [Vibrio cholerae 623-39]
gi|150422936|gb|EDN14886.1| Smf/DprA family protein [Vibrio cholerae AM-19226]
gi|229332299|gb|EEN97786.1| hypothetical protein VCG_003277 [Vibrio cholerae 12129(1)]
gi|327482959|gb|AEA77366.1| Rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae LMA3894-4]
Length = 371
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|313835211|gb|EFS72925.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA2]
gi|314929183|gb|EFS93014.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL044PA1]
gi|314970866|gb|EFT14964.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL037PA3]
Length = 278
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 39 VSVEDLVEATGVSAMTIYRDLASLEASGVLQRHRGRVVAVA 79
>gi|295675124|ref|YP_003603648.1| DNA protecting protein DprA [Burkholderia sp. CCGE1002]
gi|295434967|gb|ADG14137.1| DNA protecting protein DprA [Burkholderia sp. CCGE1002]
Length = 409
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 23 INITHYPEYTQ-CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
P+ + R+ +L + P ++ + T +E ++ LL L+LAG++ P
Sbjct: 340 PPSGSAPQPALAPDAQRLLAALGHSPTTLEILAARTEMEDAALHAALLRLELAGKITLLP 399
Query: 82 EGKVSLTMHL 91
G+ H
Sbjct: 400 GGRFMRAHHD 409
>gi|228471288|ref|ZP_04056094.1| Smf protein DNA processing chain A [Porphyromonas uenonis 60-3]
gi|228306930|gb|EEK16028.1| Smf protein DNA processing chain A [Porphyromonas uenonis 60-3]
Length = 384
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + + L + + ID I T + V L L+ G + P+G+ L
Sbjct: 325 LEPKTRPLLDLLIESGDGLSIDAICDQTLMGVDEVSFRLFLLESDGAVSLQPDGRYKL 382
>gi|50843761|ref|YP_056988.1| DeoR family transcriptional regulator [Propionibacterium acnes
KPA171202]
gi|289424364|ref|ZP_06426147.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK187]
gi|289427560|ref|ZP_06429273.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J165]
gi|295131854|ref|YP_003582517.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK137]
gi|50841363|gb|AAT84030.1| putative regulatory protein, DeoR family [Propionibacterium acnes
KPA171202]
gi|289155061|gb|EFD03743.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK187]
gi|289159490|gb|EFD07681.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J165]
gi|291375656|gb|ADD99510.1| transcriptional regulator, DeoR family [Propionibacterium acnes
SK137]
gi|313765061|gb|EFS36425.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL013PA1]
gi|313771101|gb|EFS37067.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL074PA1]
gi|313792605|gb|EFS40691.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA1]
gi|313803604|gb|EFS44786.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA2]
gi|313806817|gb|EFS45315.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA2]
gi|313811733|gb|EFS49447.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL083PA1]
gi|313814254|gb|EFS51968.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL025PA1]
gi|313815689|gb|EFS53403.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL059PA1]
gi|313817607|gb|EFS55321.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL046PA2]
gi|313821567|gb|EFS59281.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA1]
gi|313824489|gb|EFS62203.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA2]
gi|313826834|gb|EFS64548.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL063PA1]
gi|313829152|gb|EFS66866.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL063PA2]
gi|313832265|gb|EFS69979.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL007PA1]
gi|313832726|gb|EFS70440.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL056PA1]
gi|313839586|gb|EFS77300.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL086PA1]
gi|314916179|gb|EFS80010.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA4]
gi|314917443|gb|EFS81274.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA1]
gi|314921781|gb|EFS85612.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA3]
gi|314926230|gb|EFS90061.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL036PA3]
gi|314930951|gb|EFS94782.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL067PA1]
gi|314955378|gb|EFS99783.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL027PA1]
gi|314959124|gb|EFT03226.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA1]
gi|314961626|gb|EFT05727.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA2]
gi|314963910|gb|EFT08010.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA1]
gi|314975164|gb|EFT19259.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL053PA1]
gi|314977574|gb|EFT21669.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL045PA1]
gi|314979958|gb|EFT24052.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL072PA2]
gi|314985079|gb|EFT29171.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA1]
gi|314987149|gb|EFT31241.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA2]
gi|314990651|gb|EFT34742.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL005PA3]
gi|315079123|gb|EFT51130.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL053PA2]
gi|315081533|gb|EFT53509.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL078PA1]
gi|315083042|gb|EFT55018.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL027PA2]
gi|315086576|gb|EFT58552.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL002PA3]
gi|315087980|gb|EFT59956.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL072PA1]
gi|315096940|gb|EFT68916.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL038PA1]
gi|315099377|gb|EFT71353.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL059PA2]
gi|315102279|gb|EFT74255.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL046PA1]
gi|315107426|gb|EFT79402.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL030PA1]
gi|315109720|gb|EFT81696.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL030PA2]
gi|327332466|gb|EGE74201.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL096PA2]
gi|327334089|gb|EGE75804.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL096PA3]
gi|327444506|gb|EGE91160.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL013PA2]
gi|327446759|gb|EGE93413.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL043PA2]
gi|327448801|gb|EGE95455.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL043PA1]
gi|327454219|gb|EGF00874.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA3]
gi|327456277|gb|EGF02932.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL083PA2]
gi|327457449|gb|EGF04104.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL092PA1]
gi|328755976|gb|EGF69592.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL087PA1]
gi|328758012|gb|EGF71628.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL020PA1]
gi|328758939|gb|EGF72555.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL025PA2]
gi|328759862|gb|EGF73452.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL099PA1]
gi|332676717|gb|AEE73533.1| HTH-type transcriptional regulator YgbI [Propionibacterium acnes
266]
Length = 268
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVESTGVSAMTIYRDLAILESSGVLQRHRGRVVAVA 69
>gi|312792638|ref|YP_004025561.1| DNA protecting protein dpra [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312179778|gb|ADQ39948.1| DNA protecting protein DprA [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 365
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+ + L+ N +H++ +I TG + ++ L++ ++ +S
Sbjct: 314 RLIKLLDENGEMHVESLIALTGWNPGKIASLITSLEIKSKVVRTRGNIIS 363
>gi|222446039|ref|ZP_03608554.1| hypothetical protein METSMIALI_01688 [Methanobrevibacter smithii
DSM 2375]
gi|222435604|gb|EEE42769.1| hypothetical protein METSMIALI_01688 [Methanobrevibacter smithii
DSM 2375]
Length = 266
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R++I +L P+++ DI TG+ + + L+L G + ++
Sbjct: 30 RLKILATLYERPLNMKDINRTTGLSYSSISSNMFGLELGGFIYR-SGNLYHIS 81
>gi|326794870|ref|YP_004312690.1| DeoR family transcriptional regulator [Marinomonas mediterranea
MMB-1]
gi|326545634|gb|ADZ90854.1| transcriptional regulator, DeoR family [Marinomonas mediterranea
MMB-1]
Length = 252
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 36 RVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
I L + + +D++++ + + L++L+ G + G
Sbjct: 7 YKEIVDYLKDTSLATVDELVNKIDVSPATIRRDLIDLEQQGAVRRTHGG 55
>gi|320533103|ref|ZP_08033835.1| DeoR-like helix-turn-helix protein [Actinomyces sp. oral taxon
171 str. F0337]
gi|320134675|gb|EFW26891.1| DeoR-like helix-turn-helix protein [Actinomyces sp. oral taxon
171 str. F0337]
Length = 255
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 30 EYTQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E R I ++L+ +H + + TG+ + L EL G + G +
Sbjct: 3 ESPHDRRRTILRALSPTTVHSVQALSRLTGVSVITIRRDLAELAHEGLVTRVHGGALR 60
>gi|325673254|ref|ZP_08152946.1| IclR family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325555844|gb|EGD25514.1| IclR family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length = 268
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 19 HTKNINITHYPEYTQCER-VRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T + +R I + + + ++++ T + V+ +L L G
Sbjct: 7 PTDISPTDRAVPPSMVDRMTVILDAFGGFSSRVPLEELARRTRLPRSTVHRILDSLLRLG 66
Query: 76 RLCHHPEGK 84
+ H P G
Sbjct: 67 WVEHSPGGY 75
>gi|260554283|ref|ZP_05826533.1| DNA protecting protein DprA [Acinetobacter sp. RUH2624]
gi|260404592|gb|EEW98112.1| DNA protecting protein DprA [Acinetobacter sp. RUH2624]
Length = 376
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ ++N + + QSL+ V +ID ++ H + + L+
Sbjct: 297 LPTQWQSQQQSQNEETNTNIPEIPEHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLM 356
Query: 70 ELDLAGRLCHHPE 82
EL+L G
Sbjct: 357 ELELLGLCMQQSG 369
>gi|78062702|ref|YP_372610.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77970587|gb|ABB11966.1| ATP dependent helicase, Lhr family [Burkholderia sp. 383]
Length = 1515
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+HP + R R+ P+ +D I G+
Sbjct: 1032 LHPDAR---IAPALKVPAACAQPWEADAALVDVIRARLT---GFGPLALDSIATPLGLPP 1085
Query: 62 PVVYLVLLELDLAGRLCH 79
+ L L+ G +
Sbjct: 1086 ASIATALAALEREGYVMR 1103
>gi|17546679|ref|NP_520081.1| transcriptional regulatory DNA-binding transcription regulator
protein [Ralstonia solanacearum GMI1000]
gi|17428978|emb|CAD15662.1| putative transcriptional regulatory dna-binding transcription
regulator protein [Ralstonia solanacearum GMI1000]
Length = 118
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R + L P + ++ G+ P V L L+ +G + G+V
Sbjct: 16 ADATRRSMLAQLTRGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEKTGRVRTCRIE 75
Query: 92 PS 93
P
Sbjct: 76 PQ 77
>gi|289523584|ref|ZP_06440438.1| smf protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503276|gb|EFD24440.1| smf protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 374
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 4 PQIEQNFFSSQSDTNHTK---NINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGI 59
P I+ + F + R+ L +D+I +
Sbjct: 276 PLIDVDSFVHLMKGSPEGFLVKGQSEVSLAELDDGERRVYGLLREKGDRTVDNISLECKM 335
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGK 84
V+ L +L+ G + G+
Sbjct: 336 TPAQVFTTLTKLESRGLVSATGPGR 360
>gi|118463022|ref|YP_882921.1| smf family protein [Mycobacterium avium 104]
gi|118164309|gb|ABK65206.1| smf family protein [Mycobacterium avium 104]
Length = 388
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 23 INITHYPEYTQ---CERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
H R+ ++L ++ + G+ L L+LAG +
Sbjct: 309 AEEPHPVTPLDGLGEAERRVYEALPGRGAATVEQLAAGCGLLPEQALGPLAMLELAGLVR 368
Query: 79 HHPE 82
Sbjct: 369 RQDG 372
>gi|328544725|ref|YP_004304834.1| transcriptional regulator, DeoR family [polymorphum gilvum
SL003B-26A1]
gi|326414467|gb|ADZ71530.1| Transcriptional regulator, DeoR family [Polymorphum gilvum
SL003B-26A1]
Length = 253
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 31 YTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ RI L+ P + + ++ + + L E+ G L G V
Sbjct: 4 PKSVRQERILTELSQTPSLRVGELARRLDVSTETIRRDLDEMTEQGLLNRTYGGAVRSLS 63
Query: 90 HLPS 93
PS
Sbjct: 64 TEPS 67
>gi|262191291|ref|ZP_06049485.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae CT 5369-93]
gi|262032829|gb|EEY51373.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio cholerae CT 5369-93]
Length = 371
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ ID + T I + + LLEL+L G + P G +
Sbjct: 319 ELLANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIR 367
>gi|304317947|ref|YP_003853092.1| DeoR family transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779449|gb|ADL70008.1| transcriptional regulator, DeoR family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 274
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R++I + L+ + + ++ G+ + L L+L G + G + L H
Sbjct: 7 RMKIAELLSKDKSMTVSELSEILGVSESTIRRDLRMLELDGFIQRTHGGAI-LNTHT 62
>gi|152970253|ref|YP_001335362.1| DeoR transcriptional regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238894746|ref|YP_002919480.1| putative DeoR family regulatory protein [Klebsiella pneumoniae
NTUH-K2044]
gi|262044264|ref|ZP_06017330.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330006126|ref|ZP_08305525.1| transcriptional regulator, DeoR family [Klebsiella sp. MS 92-3]
gi|150955102|gb|ABR77132.1| putative bacterial regulatory protein, DeoR [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238547062|dbj|BAH63413.1| putative DeoR-family bacterial regulatory protein [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259038323|gb|EEW39528.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535942|gb|EGF62364.1| transcriptional regulator, DeoR family [Klebsiella sp. MS 92-3]
Length = 266
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 35 ERVR-IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
ER R I + L + + +++I T + + L EL+ G L G +L P
Sbjct: 5 ERHRLIVELLGQHGVMRVNEIAQATRVSRETIRRDLSELERKGILTRSHGG--ALAAENP 62
Query: 93 SP 94
P
Sbjct: 63 LP 64
>gi|328905756|gb|EGG25532.1| DeoR family transcriptional regulator [Propionibacterium sp. P08]
Length = 271
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 32 VSVEDLVEATGVSAMTIYRDLASLEASGVLQRHRGRVVAVA 72
>gi|260774552|ref|ZP_05883465.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio metschnikovii CIP 69.14]
gi|260610458|gb|EEX35664.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio metschnikovii CIP 69.14]
Length = 367
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 31 YTQCERVR---IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E++ + ++ +D + T I V + LLEL+L G + G +
Sbjct: 303 PNDEEQLPFPELLANVGVEATPVDILAQRTHIPVQEVMMQLLELELLGHVVAVSGGYIR 361
>gi|325068271|ref|ZP_08126944.1| DeoR family regulatory protein [Actinomyces oris K20]
Length = 255
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 30 EYTQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E R I ++L+ +H + + TG+ + L EL G + G +
Sbjct: 3 ESPHDRRRTILRALSPTTVHSVQALSRLTGVSVITIRRDLAELAHEGLVTRVHGGALR 60
>gi|289674175|ref|ZP_06495065.1| putative IclR-family regulatory protein [Pseudomonas syringae pv.
syringae FF5]
Length = 246
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 34 CERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ L + + + +++ TG+ + +++ L+ G + +G+ L
Sbjct: 14 ASADRVLTVLSSFQIGDSALSLVELVERTGLIKSTIMRLMVSLETYGFVNRLADGRYMLA 73
Query: 89 MH 90
Sbjct: 74 SE 75
>gi|190151041|ref|YP_001969566.1| protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307264403|ref|ZP_07545989.1| hypothetical protein appser13_17940 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189916172|gb|ACE62424.1| Protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306870219|gb|EFN01977.1| hypothetical protein appser13_17940 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 384
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +N K ++ + +I ++ PI IDD+ T +E
Sbjct: 301 PQAVENAQFFTKADVPNKVNHLAKKLPELTDCQQQIVAHVSLEPISIDDLAKATALEVDT 360
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
+ + LL L+L + G V
Sbjct: 361 LLVELLGLELLSVIKQVSGGYVR 383
>gi|307130598|ref|YP_003882614.1| transcriptional repressor of the fructose operon, DeoR family
[Dickeya dadantii 3937]
gi|306528127|gb|ADM98057.1| Transcriptional repressor of the fructose operon, DeoR family
[Dickeya dadantii 3937]
Length = 258
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ D II H G+ V +L+L+ G L G V+ P
Sbjct: 20 VTTDHIIQHLGVSRETVRRDVLKLEAQGVLRRVHGGIVATGTEPEPP 66
>gi|254796757|ref|YP_003081593.1| DNA processing chain A [Neorickettsia risticii str. Illinois]
gi|254590002|gb|ACT69364.1| DNA processing chain A [Neorickettsia risticii str. Illinois]
Length = 375
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 28/52 (53%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ +I + +++ I + + H GI + L ++EL++ G++ +VSL
Sbjct: 321 KAQILKKIDSTSIPMSQLAHELGISEKTLLLAIVELEIEGKVTRTIANEVSL 372
>gi|222530148|ref|YP_002574030.1| DNA protecting protein DprA [Caldicellulosiruptor bescii DSM 6725]
gi|222456995|gb|ACM61257.1| DNA protecting protein DprA [Caldicellulosiruptor bescii DSM 6725]
Length = 365
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+ + L+ N +H++ +I TG E + ++ L++ ++ +S
Sbjct: 313 KRLIKLLDENGEMHVESLIALTGWEPGKLASLITSLEIKSKVVRGRGNIIS 363
>gi|148272559|ref|YP_001222120.1| hypothetical protein CMM_1379 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830489|emb|CAN01424.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 431
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 22/93 (23%), Gaps = 19/93 (20%)
Query: 12 SSQSDTNHTKNINITHYPEYT------------QCERVRIKQSL----NNVPIHIDDIIH 55
+++ VR+ +L +
Sbjct: 339 QARASEAPHAPSRAAPSAPDAARAGARTAEVRGDPRVVRVLDALAVRRGRETADV---AA 395
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+G+ VL L+L G + G V +
Sbjct: 396 RSGLGLAETSSVLGMLELEGAVARPDGGWVRRS 428
>gi|330955155|gb|EGH55415.1| putative IclR family regulatory protein [Pseudomonas syringae Cit
7]
Length = 228
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ + + + +++ TG+ + +++ L+ G + +G+ L
Sbjct: 10 IGDSALSLVELVERTGLIKSTIMRLMVSLETYGFVNRLADGRYMLASE 57
>gi|312621559|ref|YP_004023172.1| DNA protecting protein dpra [Caldicellulosiruptor kronotskyensis
2002]
gi|312202026|gb|ADQ45353.1| DNA protecting protein DprA [Caldicellulosiruptor kronotskyensis
2002]
Length = 365
Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+ + L+ N +H++ +I TG E + ++ L++ ++ +S
Sbjct: 313 KRLIKLLDENGEMHVESLIALTGWEPGKLASLITSLEIKAKVVRGRGNIIS 363
>gi|302872580|ref|YP_003841216.1| DNA protecting protein DprA [Caldicellulosiruptor obsidiansis OB47]
gi|302575439|gb|ADL43230.1| DNA protecting protein DprA [Caldicellulosiruptor obsidiansis OB47]
Length = 365
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+H++++I TG + + ++ L++ ++ +S
Sbjct: 325 MHVENLIALTGWDPGKIASLITSLEIKSKVVRDRGNIIS 363
>gi|187479229|ref|YP_787254.1| IclR family transcriptional regulator [Bordetella avium 197N]
gi|115423816|emb|CAJ50367.1| IclR-family transcriptional regulator [Bordetella avium 197N]
Length = 272
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 22 NINITHYPEYTQCERV-RIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ P +R R+ +L P+ + ++ TG+ A + +L +L + +
Sbjct: 12 PSSDAGQPAIQVIDRAMRLLDALAAQPEPVTLKELSATTGLHASTAHRILNDLVIGRYVE 71
Query: 79 HHPEGKVSLTMHL 91
G L M L
Sbjct: 72 RVDNGLYQLGMRL 84
>gi|260886588|ref|ZP_05897851.1| DNA processing protein DprA [Selenomonas sputigena ATCC 35185]
gi|260863731|gb|EEX78231.1| DNA processing protein DprA [Selenomonas sputigena ATCC 35185]
Length = 370
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ P+ E + L+ + +D++I +A V +LL L + G +
Sbjct: 296 ASRTSASPPQELTEEEAAVYALLSREAALSLDELICRLQGKAANVAFLLLGLRVKGLVEE 355
Query: 80 HP 81
P
Sbjct: 356 TP 357
>gi|322513217|ref|ZP_08066343.1| DNA-processing protein Smf [Actinobacillus ureae ATCC 25976]
gi|322120993|gb|EFX92834.1| DNA-processing protein Smf [Actinobacillus ureae ATCC 25976]
Length = 384
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 31/83 (37%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +N + ++ + +I + + PI IDD+ T +E
Sbjct: 301 PQAVENAQFFAKANVPNRGNHLAKKLPEMTACQQQIVEHIGLDPISIDDLAKATSLEVET 360
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
+ + LL L+L + G V
Sbjct: 361 LLVELLGLELLSVIKQVNGGYVR 383
>gi|225619937|ref|YP_002721194.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
WA1]
gi|225214756|gb|ACN83490.1| transcription-repair coupling factor [Brachyspira hyodysenteriae
WA1]
Length = 246
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I I+++I + + L L+ AG++ G +
Sbjct: 20 IKIEELIERLNVSEATIRRDLTFLEKAGKIRRVHGGAI 57
>gi|261406254|ref|YP_003242495.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10]
gi|261282717|gb|ACX64688.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10]
Length = 305
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 28/76 (36%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ + D + + + ER+R+ + + + P + ++ G +
Sbjct: 200 LLQYPIDIPEEDEDEPPVVLLRMTEALADPERLRLLRYIADEPKAVSEMASELGQPYEQL 259
Query: 65 YLVLLELDLAGRLCHH 80
L+ L AG L H
Sbjct: 260 MHHLMILRAAGLLRSH 275
>gi|329851598|ref|ZP_08266355.1| iclR helix-turn-helix domain protein [Asticcacaulis biprosthecum
C19]
gi|328840444|gb|EGF90016.1| iclR helix-turn-helix domain protein [Asticcacaulis biprosthecum
C19]
Length = 259
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 39 IKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
I + L+ P + I ++ G ++ V++ ++ L HP + +T+ L
Sbjct: 29 ILELLSEFPRGLTITEMAGKLGFSVSEIFRVIMVMERLAWLRRHPGDRFRVTLRL 83
>gi|313111456|ref|ZP_07797258.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa 39016]
gi|310883760|gb|EFQ42354.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa 39016]
Length = 132
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 89 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 131
>gi|284045125|ref|YP_003395465.1| DNA protecting protein DprA [Conexibacter woesei DSM 14684]
gi|283949346|gb|ADB52090.1| DNA protecting protein DprA [Conexibacter woesei DSM 14684]
Length = 366
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHT--GIEAPVVYLVLLELDLAG 75
+ + + + + + D + T G+ L +L+L G
Sbjct: 296 ADAPRVPGNAVASGLPADLRALLERVGSG---QDTVAALTADGLPVDAALAGLAQLELRG 352
Query: 76 RLCHHPEGKVS 86
++ G+ +
Sbjct: 353 KVRRTTGGRYA 363
>gi|78044382|ref|YP_360615.1| putative DNA proccessing protein DprA [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996497|gb|ABB15396.1| putative DNA proccessing protein DprA [Carboxydothermus
hydrogenoformans Z-2901]
Length = 358
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I + L N + +++I + V + L++ G + GK +
Sbjct: 308 KILEVLVNEDLTVEEIAYRLNARVSEVLREISFLEIKGFVKKQFGGKFTR 357
>gi|307246636|ref|ZP_07528707.1| hypothetical protein appser1_18320 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307251006|ref|ZP_07532931.1| hypothetical protein appser4_17690 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307255621|ref|ZP_07537426.1| hypothetical protein appser9_18460 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260072|ref|ZP_07541784.1| hypothetical protein appser11_18580 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306852508|gb|EFM84742.1| hypothetical protein appser1_18320 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856946|gb|EFM89077.1| hypothetical protein appser4_17690 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306861470|gb|EFM93459.1| hypothetical protein appser9_18460 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865908|gb|EFM97784.1| hypothetical protein appser11_18580 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 384
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +N K ++ + +I ++ PI IDD+ T +E
Sbjct: 301 PQAVENAQFFTKADVPNKVNHLAKKLPELTACQQQIVAHISLEPISIDDLAKATSLEVET 360
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
+ + LL L+L + G V
Sbjct: 361 LLVELLGLELLSVIKQVSGGYVR 383
>gi|78189408|ref|YP_379746.1| SMF protein [Chlorobium chlorochromatii CaD3]
gi|78171607|gb|ABB28703.1| SMF protein [Chlorobium chlorochromatii CaD3]
Length = 385
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEA 61
P + T + T +I Q+L++ P HID + ++
Sbjct: 299 QPHQAKPI-HPTKATANATTTTATTQLPLLNPLESQIYQALSSSDPTHIDTLAATLQLDL 357
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
++L L EL+L G + P
Sbjct: 358 STLFLHLFELELQGVIEQQPGQLF 381
>gi|32035463|ref|ZP_00135424.1| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126209176|ref|YP_001054401.1| protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae L20]
gi|126097968|gb|ABN74796.1| Protein smf (DNA-processing chain A) [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 384
Score = 38.3 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
PQ +N K ++ + +I ++ PI IDD+ T +E
Sbjct: 301 PQAVENAQFFTKADVPNKVNHLAKKLPELTACQQQIVAHISLEPISIDDLAKATSLEVET 360
Query: 64 VYLVLLELDLAGRLCHHPEGKVS 86
+ + LL L+L + G V
Sbjct: 361 LLVELLGLELLSVIKQVSGGYVR 383
>gi|312137949|ref|YP_004005285.1| iclr family transcriptional regulator [Rhodococcus equi 103S]
gi|311887288|emb|CBH46599.1| putative IclR family transcriptional regulator [Rhodococcus equi
103S]
Length = 268
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 19 HTKNINITHYPEYTQCER-VRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T + +R I + + + ++++ T + V+ +L L G
Sbjct: 7 PTDISPTDRAVPPSMVDRMTVILDAFGGFSSRVPLEELARRTRLPRSTVHRILDSLLRLG 66
Query: 76 RLCHHPEGK 84
+ H P G
Sbjct: 67 WVEHSPGGY 75
>gi|300691127|ref|YP_003752122.1| transcriptional regulatory, arsR family [Ralstonia solanacearum
PSI07]
gi|299078187|emb|CBJ50830.1| putative transcriptional regulatory, arsR family [Ralstonia
solanacearum PSI07]
Length = 122
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R + L P + ++ G+ P V L L+ +G + G+V
Sbjct: 20 ADATRRSMLAQLTRGPASVSELARPLGMSLPAVMQHLAVLEHSGLVRSEKTGRVRTCRIE 79
Query: 92 PS 93
P
Sbjct: 80 PQ 81
>gi|229097286|ref|ZP_04228248.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-29]
gi|229103375|ref|ZP_04234057.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-28]
gi|229116283|ref|ZP_04245673.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-3]
gi|228667115|gb|EEL22567.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-3]
gi|228679871|gb|EEL34066.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-28]
gi|228686097|gb|EEL40013.1| Transcriptional regulator, DeoR [Bacillus cereus Rock3-29]
Length = 261
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + L+ + + D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLSTDGRVIVKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|13542034|ref|NP_111722.1| hypothetical protein TVN1203 [Thermoplasma volcanium GSS1]
gi|14325464|dbj|BAB60368.1| TVG1262718 [Thermoplasma volcanium GSS1]
Length = 167
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 51 DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ +G+ AP V +L L+ G + +G
Sbjct: 121 NVLVRESGLSAPTVSRILFSLENYGLIERQRKGM 154
>gi|253687931|ref|YP_003017121.1| transcriptional regulator, DeoR family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754509|gb|ACT12585.1| transcriptional regulator, DeoR family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 256
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +LN + + II H G+ V +++L+ AG L G V+ T P
Sbjct: 11 QALLSTLNR--VSTEKIIQHLGVSRETVRRDIVKLEAAGVLRRVHGGIVATTQEPEPP 66
>gi|188535540|ref|YP_001909337.1| Transcriptional regulator, DeoR family [Erwinia tasmaniensis
Et1/99]
gi|188030582|emb|CAO98477.1| Transcriptional regulator, DeoR family [Erwinia tasmaniensis
Et1/99]
Length = 258
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 37 VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
RI+ L+ I + II GI ++EL+ G G V+L P
Sbjct: 8 HRIRALLSTFSRIGTEQIIKELGISRETARRDIIELEAQGLAKRVHGGLVALDTAPEPP 66
>gi|223936550|ref|ZP_03628461.1| ribonuclease R [bacterium Ellin514]
gi|223894714|gb|EEF61164.1| ribonuclease R [bacterium Ellin514]
Length = 740
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 36 RVRIKQSLN---NVPIHIDDIIHHTGIEA---PVVYLVLLELDLAGRLCHHPEGKVSL 87
+I + PI+I ++ + P V L L+ GR+ + L
Sbjct: 2 EDKILKLFGQPDYTPINISQLMRRLKLAPNDKPEVEKRLARLEREGRIARIKGNRFIL 59
>gi|318041930|ref|ZP_07973886.1| regulatory proteins, ArsR family protein [Synechococcus sp.
CB0101]
Length = 101
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R+ + ++L P+++ ++ T + +V L L +AG + PEG
Sbjct: 13 EPNRLAVLEALRGGPLNVTAVVEKTALSQALVSKHLKLLTIAGVVQRRPEG 63
>gi|312876485|ref|ZP_07736468.1| DNA protecting protein DprA [Caldicellulosiruptor lactoaceticus 6A]
gi|311796696|gb|EFR13042.1| DNA protecting protein DprA [Caldicellulosiruptor lactoaceticus 6A]
Length = 365
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 38 RIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R+ + L+ N +H++ +I TG + + ++ L++ ++ +S
Sbjct: 314 RLIKLLDENGEMHMESLIALTGWDPGKIASLITSLEIKSKVVRTRGNIIS 363
>gi|296125638|ref|YP_003632890.1| DeoR family transcriptional regulator [Brachyspira murdochii DSM
12563]
gi|296017454|gb|ADG70691.1| transcriptional regulator, DeoR family [Brachyspira murdochii DSM
12563]
Length = 247
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I I+++I + + L L+ AG++ G V
Sbjct: 20 IKIEELIERLNVSEATIRRDLTFLEEAGKIKRVHGGAV 57
>gi|41409059|ref|NP_961895.1| hypothetical protein MAP2961c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397418|gb|AAS05278.1| hypothetical protein MAP_2961c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 388
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 23 INITHYPEYTQ---CERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
H R+ ++L ++ + G+ L L+LAG +
Sbjct: 309 AEEPHPVTPLDGLGEAERRVYEALPGRGAATVEQLAAGCGLLPEQALGPLAMLELAGLVR 368
Query: 79 HHPE 82
Sbjct: 369 RQDG 372
>gi|299136024|ref|ZP_07029208.1| transcriptional regulator, IclR family [Acidobacterium sp.
MP5ACTX8]
gi|298602148|gb|EFI58302.1| transcriptional regulator, IclR family [Acidobacterium sp.
MP5ACTX8]
Length = 273
Score = 38.3 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHID--DIIHHTGIEAPVVYLVLLEL 71
++ N +Y + + + + L + P + + ++ +LL L
Sbjct: 5 RTAKAAVTNEKTLNYATPALEKGLDVLELLAHQPAGLTKSQMARELNRTVSEIFRMLLCL 64
Query: 72 DLAGRLCHHPEGKVSLTM 89
+ G + E + SLT+
Sbjct: 65 ERRGYIAQLAEDRYSLTL 82
>gi|209884137|ref|YP_002287994.1| transcriptional regulator, IclR family [Oligotropha
carboxidovorans OM5]
gi|209872333|gb|ACI92129.1| transcriptional regulator, IclR family [Oligotropha
carboxidovorans OM5]
Length = 249
Score = 38.3 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 39 IKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I +++ + P + +I T + + +L+ L+ G + +G+ +L
Sbjct: 23 IVEAVEASAEPQTLAEIAQRTDLYKSTILRLLVTLEGRGLIVRWSDGRYAL 73
>gi|330839578|ref|YP_004414158.1| DNA protecting protein DprA [Selenomonas sputigena ATCC 35185]
gi|329747342|gb|AEC00699.1| DNA protecting protein DprA [Selenomonas sputigena ATCC 35185]
Length = 364
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ P+ E + L+ + +D++I +A V +LL L + G +
Sbjct: 290 ASRTSASPPQELTEEEAAVYALLSREAALSLDELICRLQGKAANVAFLLLGLRVKGLVEE 349
Query: 80 HP 81
P
Sbjct: 350 TP 351
>gi|260424749|ref|ZP_05733144.2| DNA processing protein DprA [Dialister invisus DSM 15470]
gi|260403042|gb|EEW96589.1| DNA processing protein DprA [Dialister invisus DSM 15470]
Length = 363
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 28 YPEYTQCERVRIKQ-SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
PE E + + + +DI+ +G+ + ++LL L L G + G+
Sbjct: 299 SPEQLTLEEEVVYRFCCTGEEVTAEDILQQSGMSVMKITMLLLRLQLKGFIKETGSGRF 357
>gi|255530594|ref|YP_003090966.1| regulatory protein DeoR [Pedobacter heparinus DSM 2366]
gi|255343578|gb|ACU02904.1| regulatory protein DeoR [Pedobacter heparinus DSM 2366]
Length = 247
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 35 ERVR--IKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
E + I ++ +H D+ + V L +L+ G+L G +S + H
Sbjct: 4 EERQNYILNQISIYSKVHTSDLCAALDVSLDTVRRDLSDLENEGKLVKVHGGAISKSFHY 63
Query: 92 PSPQ 95
P Q
Sbjct: 64 PFQQ 67
>gi|239616979|ref|YP_002940301.1| transcriptional regulator, ArsR family [Kosmotoga olearia TBF
19.5.1]
gi|239505810|gb|ACR79297.1| transcriptional regulator, ArsR family [Kosmotoga olearia TBF
19.5.1]
Length = 352
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R I ++L+ P ++D++ G+ + L L G L
Sbjct: 273 DPTRFMIIKALSERPKYVDELAAFCGLSKATISHHLSYLQSLGLLE 318
>gi|163855233|ref|YP_001629531.1| IclR family transcriptional regulator [Bordetella petrii DSM
12804]
gi|163258961|emb|CAP41260.1| transcriptional regulator, IclR family [Bordetella petrii]
Length = 283
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 15 SDTNHTKNINITHYPEYTQC---ERV-RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVL 68
S T + ER R+ +L P+ + ++ TG+ A + +L
Sbjct: 2 SATAPGSDSEHAPGQSPIAIQVIERAMRLLDALAAHPDPVTLKELSATTGLHASTAHRIL 61
Query: 69 LELDLAGRLCHHPEGKVSLTMHL 91
+L + + G L M L
Sbjct: 62 NDLVVGRYVERVDNGLYQLGMRL 84
>gi|206895407|ref|YP_002246584.1| transcriptional regulator of sugar metabolism [Coprothermobacter
proteolyticus DSM 5265]
gi|206738024|gb|ACI17102.1| transcriptional regulator of sugar metabolism [Coprothermobacter
proteolyticus DSM 5265]
Length = 258
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV--SLTMHLP 92
R +I + +++ + ++++ + V L L+ G L G + L+ + P
Sbjct: 8 RQKILEVVSSGKAVTVEELSRILDVSPSTVRRDLRFLESKGLLYRTHGGAMPPVLSSYEP 67
Query: 93 S 93
S
Sbjct: 68 S 68
>gi|154509162|ref|ZP_02044804.1| hypothetical protein ACTODO_01683 [Actinomyces odontolyticus ATCC
17982]
gi|153798796|gb|EDN81216.1| hypothetical protein ACTODO_01683 [Actinomyces odontolyticus ATCC
17982]
Length = 386
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 22 NINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC-- 78
++ H + + + R+ ++L + P ++ I + V L+EL +AG +
Sbjct: 315 PVDDDHGVDALEPTQRRVWEALPRSAPASVEAICVAAALSREEVNYALMELSVAGLVAGS 374
Query: 79 -----HHPEGK 84
G+
Sbjct: 375 TRGWTRTGGGR 385
>gi|20977189|gb|AAM33317.1|AF503595_1 putative regulatory protein [Erwinia chrysanthemi]
Length = 257
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ D II H G+ V +L+L+ G L G V+ P
Sbjct: 20 VTTDHIIQHLGVSRETVRRDVLKLEAQGVLRRVHGGIVATGTEPEPP 66
>gi|332158519|ref|YP_004423798.1| ArsR family transcriptional regulator [Pyrococcus sp. NA2]
gi|331033982|gb|AEC51794.1| ArsR family transcriptional regulator [Pyrococcus sp. NA2]
Length = 185
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R++I + L + P+ + +I G + +Y + L+ AG +
Sbjct: 20 DPTRMKILELLRSHPMSVAEIAEKLGKDKSTIYRHIRALEEAGLVE 65
>gi|293189842|ref|ZP_06608556.1| DNA protecting protein DprA [Actinomyces odontolyticus F0309]
gi|292821257|gb|EFF80202.1| DNA protecting protein DprA [Actinomyces odontolyticus F0309]
Length = 386
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 22 NINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC-- 78
++ H + + + R+ ++L + P ++ I + V L+EL +AG +
Sbjct: 315 PVDDDHGVDALEPTQRRVWEALPRSAPASVEAICVAAALSREEVNYALMELSVAGLVAGS 374
Query: 79 -----HHPEGK 84
G+
Sbjct: 375 TRGWTRTGGGR 385
>gi|329921987|ref|ZP_08277794.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
gi|328942447|gb|EGG38710.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
Length = 305
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 28/76 (36%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ + D + + + ER+R+ + + + P + ++ G +
Sbjct: 200 LLQYPIDIPEEDEDEPPVVLLRMTEALADPERLRLLRYIADEPKAVSEMASELGQPYEQL 259
Query: 65 YLVLLELDLAGRLCHH 80
L+ L AG L H
Sbjct: 260 MHHLMILRAAGLLRSH 275
>gi|330901371|gb|EGH32790.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330982865|gb|EGH80968.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 228
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ + + + +++ TG+ + +++ L+ G + +G+ L
Sbjct: 10 IGDSALSLVELVERTGLIKSTIMRLMVSLETYGFVNRLADGRYMLASE 57
>gi|240170585|ref|ZP_04749244.1| hypothetical protein MkanA1_14825 [Mycobacterium kansasii ATCC
12478]
Length = 388
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
R+ ++L +D+I +G+ V L L++ G
Sbjct: 318 LSEAERRVYEALPGRGAATVDEIAAASGLLPEQVLGQLAILEVTGLARRDDG 369
>gi|228908507|ref|ZP_04072348.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 200]
gi|228851154|gb|EEM95967.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 200]
Length = 261
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + L+ I D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLSTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLQRTHGGAIELT 60
>gi|154150697|ref|YP_001404315.1| 4-vinyl reductase, 4VR [Candidatus Methanoregula boonei 6A8]
gi|153999249|gb|ABS55672.1| 4-vinyl reductase, 4VR [Methanoregula boonei 6A8]
Length = 267
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 20/66 (30%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + R +I L + D+I+ +G V + L L
Sbjct: 12 RPDATPAVGLFATPSGIRAVQSPARAKILSVLAEHELPFDEIVRQSGKAKSTVSVQLQGL 71
Query: 72 DLAGRL 77
+ G +
Sbjct: 72 EHEGII 77
>gi|86356084|ref|YP_467976.1| ArsR family transcriptional regulator [Rhizobium etli CFN 42]
gi|86280186|gb|ABC89249.1| probable transcriptional regulator protein, ArsR family
[Rhizobium etli CFN 42]
Length = 129
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + +I I P V L L+ AG +
Sbjct: 35 SAPRRKILAYLSASGLTAGEIAERFSISKPAVSQHLSILETAGLIRR 81
>gi|218461389|ref|ZP_03501480.1| transcriptional regulator, ArsR family protein [Rhizobium etli
Kim 5]
Length = 121
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + +I + P V L L+ AG +
Sbjct: 27 SAPRRKILAYLSASGLTAGEIADRFNMSKPAVSQHLSILETAGLIRR 73
>gi|262197810|ref|YP_003269019.1| SMF family protein [Haliangium ochraceum DSM 14365]
gi|262081157|gb|ACY17126.1| SMF family protein [Haliangium ochraceum DSM 14365]
Length = 297
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ D + G+ A L+ L+L G P + +
Sbjct: 248 LDPDQLAERAGLSARACARALIGLELCGLAVAMPGQSYARST 289
>gi|313898783|ref|ZP_07832317.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2]
gi|312956365|gb|EFR37999.1| transcriptional regulator, DeoR family [Clostridium sp. HGF2]
Length = 253
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
IH+ D+ I + L+EL+ G++ G V +++
Sbjct: 20 IHVRDVAKQLNISETTIRRDLMELEQEGKVRRVHGGAVRESLNQ 63
>gi|229587598|ref|YP_002869717.1| hypothetical protein PFLU0020 [Pseudomonas fluorescens SBW25]
gi|229359464|emb|CAY46305.1| conserved SMF-related protein [Pseudomonas fluorescens SBW25]
Length = 364
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ L+ P + + +G V L EL+L G++
Sbjct: 301 QALSRPTPMPVVHPLVALLHAAPHTSEGLAIASGRSLSHVLATLTELELEGQVICESGRW 360
Query: 85 VSL 87
++
Sbjct: 361 LAR 363
>gi|227496302|ref|ZP_03926598.1| DNA-binding transcriptional regulator [Actinomyces urogenitalis
DSM 15434]
gi|226834171|gb|EEH66554.1| DNA-binding transcriptional regulator [Actinomyces urogenitalis
DSM 15434]
Length = 244
Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
R R+ + P+ + + V L L+ +G + H
Sbjct: 6 DDSTRARVLDLIVEKGPVSAAQLARVLDLTPAAVRRHLTALEESGEIQVHA 56
>gi|332300411|ref|YP_004442332.1| DNA protecting protein DprA [Porphyromonas asaccharolytica DSM
20707]
gi|332177474|gb|AEE13164.1| DNA protecting protein DprA [Porphyromonas asaccharolytica DSM
20707]
Length = 384
Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ E + L + + ID T + V L L+ G + P+G+ L
Sbjct: 325 LEPETRSLLDLLIESGDGLSIDAFCDQTLMGVDEVSFRLFLLESEGAVSLQPDGRYKL 382
>gi|119962262|ref|YP_946571.1| ArsR family transcriptional regulator [Arthrobacter aurescens
TC1]
gi|119949121|gb|ABM08032.1| putative transcriptional regulator, ArsR family [Arthrobacter
aurescens TC1]
Length = 216
Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ R RI Q L+ P + G+ V L L+ G +
Sbjct: 8 EDPAAAEASLDPIRTRILQELS-EPASATQLAAKVGLPRQKVNYHLKSLERHGLVE 62
>gi|271963352|ref|YP_003337548.1| hydroxyneurosporene-O-methyltransferase [Streptosporangium roseum
DSM 43021]
gi|270506527|gb|ACZ84805.1| hydroxyneurosporene-O-methyltransferase [Streptosporangium roseum
DSM 43021]
Length = 334
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 41 QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
L + P+ ++++ G + + VL +L G + G LT
Sbjct: 31 DHLKDGPLSVEELAVRCGADPAALGRVLRQLAAMGMVATAAAGTYELT 78
>gi|86741982|ref|YP_482382.1| putative transcriptional regulator [Frankia sp. CcI3]
gi|86568844|gb|ABD12653.1| putative transcriptional regulator [Frankia sp. CcI3]
Length = 478
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 18/63 (28%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ R+ Q+L + D+ G+ AP + L L G +
Sbjct: 404 ATATPVATAEPPLGATERRVYQALTRQGRTVSDLAEELGLSAPNIRKALRNLRGRGLILQ 463
Query: 80 HPE 82
Sbjct: 464 LGG 466
>gi|229179052|ref|ZP_04306409.1| Transcriptional regulator, DeoR [Bacillus cereus 172560W]
gi|228604420|gb|EEK61884.1| Transcriptional regulator, DeoR [Bacillus cereus 172560W]
Length = 261
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R RI + LN I ++ + + L ++ G L G + LT
Sbjct: 7 RERILELLNTDGRVIAKELAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|308234477|ref|ZP_07665214.1| DNA protecting protein DprA [Atopobium vaginae DSM 15829]
gi|328944070|ref|ZP_08241535.1| DNA protecting protein DprA [Atopobium vaginae DSM 15829]
gi|327492039|gb|EGF23813.1| DNA protecting protein DprA [Atopobium vaginae DSM 15829]
Length = 340
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E + +I +L P+ DD+ + + L + + G + +G+ S
Sbjct: 267 ESLKPHLGKIMSALFANPMRADDLAQQLDEKIITILSTLGDFEAQGLVKRLIDGRFS 323
>gi|328955540|ref|YP_004372873.1| DeoR family transcriptional regulator [Coriobacterium glomerans
PW2]
gi|328455864|gb|AEB07058.1| transcriptional regulator, DeoR family [Coriobacterium glomerans
PW2]
Length = 270
Score = 37.9 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV---SLTMHL 91
R RI + L + + + D+ G+ + L +LD AG L G V ++ +
Sbjct: 21 RNRILELLASESRVLVGDLSMRFGVSPATLRNDLRDLDAAGLLRRTHGGAVVREAVAVEQ 80
Query: 92 PS 93
P+
Sbjct: 81 PA 82
>gi|257063753|ref|YP_003143425.1| DNA protecting protein DprA [Slackia heliotrinireducens DSM 20476]
gi|256791406|gb|ACV22076.1| DNA protecting protein DprA [Slackia heliotrinireducens DSM 20476]
Length = 319
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 38 RIKQSLNNVPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +SL P+ +D+II G + + EL+ G + +P+G+
Sbjct: 265 EVFRSLEANPMRMDEIIEKCSEGVGQGPQGIVKAIAELEARGVVERYPDGRF 316
>gi|116696149|ref|YP_841725.1| IclR family transcriptional regulator [Ralstonia eutropha H16]
gi|113530648|emb|CAJ96995.1| transcriptional regulator, IclR-family [Ralstonia eutropha H16]
Length = 249
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 42 SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
L + + + ++ +G+ + +L L+ AG + +G+ L
Sbjct: 34 RLGDTALGLAELAQRSGLYKSTLLRLLASLEHAGLVRRQSDGRYGL 79
>gi|289764615|ref|ZP_06523993.1| smf protein [Fusobacterium sp. D11]
gi|289716170|gb|EFD80182.1| smf protein [Fusobacterium sp. D11]
Length = 288
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L++ ++D I+ T I+ + L+ L++ G + G+
Sbjct: 239 ILNCLSSE-KNLDGILAETKIKETEILAELMTLEIMGVIKSITGGRYK 285
>gi|260494674|ref|ZP_05814804.1| DNA protecting protein DprA [Fusobacterium sp. 3_1_33]
gi|260197836|gb|EEW95353.1| DNA protecting protein DprA [Fusobacterium sp. 3_1_33]
Length = 288
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L++ ++D I+ T I+ + L+ L++ G + G+
Sbjct: 239 ILNCLSSE-KNLDGILAETKIKETEILAELMTLEIMGVIKSITGGRYK 285
>gi|256026614|ref|ZP_05440448.1| Smf protein [Fusobacterium sp. D11]
Length = 284
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L++ ++D I+ T I+ + L+ L++ G + G+
Sbjct: 235 ILNCLSSE-KNLDGILAETKIKETEILAELMTLEIMGVIKSITGGRYK 281
>gi|269838140|ref|YP_003320368.1| putative transcriptional regulator [Sphaerobacter thermophilus
DSM 20745]
gi|269787403|gb|ACZ39546.1| putative transcriptional regulator [Sphaerobacter thermophilus
DSM 20745]
Length = 244
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
S + R +I +L + + D + GI A V L L+
Sbjct: 13 SSRHAGTPEPPLGTQAPRGATRRKILTTLKKSDGLTADQLAALLGITAMAVRKHLTALER 72
Query: 74 AGRLCHHPEGKVSLTMHLPS 93
G + V + P+
Sbjct: 73 DGLVESTA---VRRPVGRPA 89
>gi|237744892|ref|ZP_04575373.1| SMF family protein [Fusobacterium sp. 7_1]
gi|229432121|gb|EEO42333.1| SMF family protein [Fusobacterium sp. 7_1]
Length = 288
Score = 37.9 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I L++ ++D I+ T I+ + L+ L++ G + G+
Sbjct: 239 ILNCLSSE-KNLDGILAETKIKETEILAELMTLEIMGVIKSITGGRYK 285
>gi|325067042|ref|ZP_08125715.1| DNA protecting protein DprA [Actinomyces oris K20]
Length = 459
Score = 37.9 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + ++ D I+ +G+ L L+L+G++ G
Sbjct: 394 LEPNASLVLDAMPARAAASTDSIVRSSGLSPKETTSALGILELSGKVERTASG 446
>gi|227497528|ref|ZP_03927756.1| DNA protecting protein DprA [Actinomyces urogenitalis DSM 15434]
gi|226833009|gb|EEH65392.1| DNA protecting protein DprA [Actinomyces urogenitalis DSM 15434]
Length = 437
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHY----PEYTQCERVRIKQSL-NNVPIHIDDIIHHTGI 59
+E +D K + + + ++ ++ + G+
Sbjct: 342 ALELVLPLGLTDPEADKEADPARAGSGLLDGLDRSSAAVLDAMPARGAASVEALARSAGL 401
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
V L L+LAG++C P G
Sbjct: 402 AESEVRAALGLLELAGKVCRDPRGWWRRA 430
>gi|152965377|ref|YP_001361161.1| DNA protecting protein DprA [Kineococcus radiotolerans SRS30216]
gi|151359894|gb|ABS02897.1| DNA protecting protein DprA [Kineococcus radiotolerans SRS30216]
Length = 395
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLV 67
+ + +R+ + L ++ ++ G+E VV V
Sbjct: 313 ELLGELGREPAPVRSVERRAFDGLDRDELRVAECLPRRGGCDLERLVLDAGLELAVVQSV 372
Query: 68 LLELDLAGRLCHHPEG 83
L L+L+G P G
Sbjct: 373 LGRLELSGIAVRVPGG 388
>gi|90425897|ref|YP_534267.1| DeoR family transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90107911|gb|ABD89948.1| transcriptional regulator, DeoR family [Rhodopseudomonas
palustris BisB18]
Length = 258
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R+ ++LN I IDD+ + A V L +L + G + LT H
Sbjct: 9 HARLLEALNAGEIDIDDLARRFEVSASTVRRDLQQLSKINAVRRTYGGAI-LTGHA 63
>gi|118592804|ref|ZP_01550193.1| transcriptional regulator, DeoR family protein [Stappia aggregata
IAM 12614]
gi|118434574|gb|EAV41226.1| transcriptional regulator, DeoR family protein [Stappia aggregata
IAM 12614]
Length = 250
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 35 ERVR-IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
ER R I L + +D+ + V LL+L+ AG++ G V LP
Sbjct: 5 ERHRLILSMLGAKQQVSANDLAQMLNVSRETVRRDLLDLEEAGQVNRVHGGAV-----LP 59
Query: 93 SPQ 95
P+
Sbjct: 60 DPR 62
>gi|116672682|ref|YP_833615.1| DeoR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116612791|gb|ABK05515.1| transcriptional regulator, DeoR family [Arthrobacter sp. FB24]
Length = 256
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 35 ERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
ER R+ L + + +D+++ G + L L + G L G SL +
Sbjct: 5 ERHRLIGELLRSREEVTVDELMAECGASGATIRRDLDTLAVHGVLRRVHGGAKSLVLRGE 64
Query: 93 SP 94
+P
Sbjct: 65 NP 66
>gi|302557788|ref|ZP_07310130.1| LOW QUALITY PROTEIN: DeoR family transcriptional regulator
[Streptomyces griseoflavus Tu4000]
gi|302475406|gb|EFL38499.1| LOW QUALITY PROTEIN: DeoR family transcriptional regulator
[Streptomyces griseoflavus Tu4000]
Length = 259
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 27 HYPEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
P +Q R I + + ++++ H G+ A + L L GRL G +
Sbjct: 1 MPPNGSQARREEILRLATTTGLASVEELSRHFGVTASTIRRDLARLTADGRLARTYGGAM 60
Query: 86 SLTMHLPS 93
+L H +
Sbjct: 61 ALNAHPEA 68
>gi|119715580|ref|YP_922545.1| transcriptional regulator [Nocardioides sp. JS614]
gi|119536241|gb|ABL80858.1| transcriptional regulator, ArsR family [Nocardioides sp. JS614]
Length = 229
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 31 YTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
R I + L P+ + + TG+ V L L G +
Sbjct: 25 PLSPSRRAILEHLHGQPQPLTLAALARITGLHPNTVREHLDALVRRGLVRRLAG 78
>gi|11499852|ref|NP_071096.1| hypothetical protein AF2271 [Archaeoglobus fulgidus DSM 4304]
gi|2648262|gb|AAB88995.1| predicted coding region AF_2271 [Archaeoglobus fulgidus DSM 4304]
Length = 255
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL-DLAGRLC 78
+R I L+ P I +I TGI P+V L +L +L G +
Sbjct: 10 SGQRKEILNILSISPKSIKEISELTGISPPLVSRHLKKLGEL-GLVE 55
>gi|89067524|ref|ZP_01155037.1| hypothetical protein OG2516_11806 [Oceanicola granulosus
HTCC2516]
gi|89047093|gb|EAR53147.1| hypothetical protein OG2516_11806 [Oceanicola granulosus
HTCC2516]
Length = 309
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 32 TQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI + L+ P++++DI + V + L+ G +
Sbjct: 21 ASVARARILKLLHTDGPMNLNDIAARLELPQSSVSSNVALLESGGLIRS 69
>gi|134293431|ref|YP_001117167.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134136588|gb|ABO57702.1| ATP dependent helicase, Lhr family [Burkholderia vietnamiensis G4]
Length = 1505
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+HP FS R R+ P+ + I G+
Sbjct: 1020 LHPDAR---FSPALKVPAACAQPWEADAALVDVIRARLT---GFGPLTVGAIAEPLGLPP 1073
Query: 62 PVVYLVLLELDLAGRLCH 79
V L L+ G +
Sbjct: 1074 ASVETALAALEREGYVMR 1091
>gi|194209543|ref|XP_001915905.1| PREDICTED: similar to Adenylate cyclase type 1 (Adenylate cyclase
type I) (ATP pyrophosphate-lyase 1) (Adenylyl cyclase 1)
(Ca(2+)/calmodulin-activated adenylyl cyclase) [Equus
caballus]
Length = 1176
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL-----LELDLAGR 76
+ P + + +P+ I + + + ++ VL L L+L+G
Sbjct: 759 RSPVLPAPPCESAPHALLCGLVGTLPLAI--FLRVSSLPKMILLSVLTASYILVLELSGY 816
Query: 77 LCHHPEGKVSLTMHLP 92
G VS P
Sbjct: 817 TKAVGGGTVSGRSFEP 832
>gi|27381752|ref|NP_773281.1| hypothetical protein blr6641 [Bradyrhizobium japonicum USDA 110]
gi|27354921|dbj|BAC51906.1| blr6641 [Bradyrhizobium japonicum USDA 110]
Length = 406
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIE 60
+ P E + K ++ + + + L++ P + G
Sbjct: 298 LKPLAEISATKPGFVLAPRKTRDVLVLARPVEEKHAAVLAFLSDGEPWSSSALALALGTS 357
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
A V L EL + ++ G+ M P P
Sbjct: 358 ARTVQRALEELARSNKVQSFGHGRARRWMTPPVP 391
>gi|170718904|ref|YP_001784075.1| DNA protecting protein DprA [Haemophilus somnus 2336]
gi|168827033|gb|ACA32404.1| DNA protecting protein DprA [Haemophilus somnus 2336]
Length = 368
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 10 FFSSQSDTNHTKNINITHYPE---YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
F K I P + + P+ +D++ + +G+
Sbjct: 288 PFMHYERQLTAKQIETQFPPAYKLPASPTYPELYAHIGYTPVGLDELSNKSGLSVDT 344
>gi|281355863|ref|ZP_06242357.1| DNA protecting protein DprA [Victivallis vadensis ATCC BAA-548]
gi|281318743|gb|EFB02763.1| DNA protecting protein DprA [Victivallis vadensis ATCC BAA-548]
Length = 380
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 26/82 (31%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + N + E I + L+ + +D + TG E + L+
Sbjct: 299 LAPGGEANEDAVPYDSSSVGDLPPEAREIWKLLDGRELSLDLLAEETGRETGALLSTLMM 358
Query: 71 LDLAGRLCHHPEGKVSLTMHLP 92
L++ + H + P
Sbjct: 359 LEMKLLVEHGSDMVYRRIPRRP 380
>gi|296445550|ref|ZP_06887506.1| DEAD/H associated domain protein [Methylosinus trichosporium OB3b]
gi|296256955|gb|EFH04026.1| DEAD/H associated domain protein [Methylosinus trichosporium OB3b]
Length = 1435
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 12/76 (15%)
Query: 19 HTKNINITHYPEYTQCE----RVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ P + + + + L P+ + G+ V LL
Sbjct: 952 PKARLAPQIAPPDGEAQLWSAEQALIEILRGRLEGLGPVTEHALAAALGLSPSDVAGALL 1011
Query: 70 ELDLAGRLCH---HPE 82
L+ G + P
Sbjct: 1012 ALEAEGAVMRGRFLPG 1027
>gi|289547863|ref|YP_003472851.1| DeoR family transcriptional regulator [Thermocrinis albus DSM
14484]
gi|289181480|gb|ADC88724.1| transcriptional regulator, DeoR family [Thermocrinis albus DSM
14484]
Length = 184
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ RI Q + ++ + G+ VY + EL+L GR+
Sbjct: 4 KERILQLIEEGHTNVKSLAQKLGVSLMTVYRDIKELELEGRVVRKHG 50
>gi|266621733|ref|ZP_06114668.1| putative glycerol-3-phosphate regulon repressor [Clostridium
hathewayi DSM 13479]
gi|288866595|gb|EFC98893.1| putative glycerol-3-phosphate regulon repressor [Clostridium
hathewayi DSM 13479]
Length = 249
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 34 CERV-RIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
ER +I + + + +D++ + + L +L G + G V
Sbjct: 5 AERQLKILGMIQDNGSVQVDELARKLDVSPMTIRRDLEKLQKDGLIERCHGGAV 58
>gi|91787260|ref|YP_548212.1| ArsR family transcriptional regulator [Polaromonas sp. JS666]
gi|91696485|gb|ABE43314.1| transcriptional regulator, ArsR family [Polaromonas sp. JS666]
Length = 169
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R ++ Q+L + + + G+ P L L+ AG + +G+V L
Sbjct: 20 ADPTRRKVLQTLEQGSLSVGQLAEPHGMSLPGFMKHLRVLETAGLVTRAKDGRVVNLALL 79
Query: 92 PSP 94
P P
Sbjct: 80 PEP 82
>gi|154482594|ref|ZP_02025042.1| hypothetical protein EUBVEN_00261 [Eubacterium ventriosum ATCC
27560]
gi|149736619|gb|EDM52505.1| hypothetical protein EUBVEN_00261 [Eubacterium ventriosum ATCC
27560]
Length = 333
Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 29/78 (37%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + + + + + + L P +I ++++ TG + + +L
Sbjct: 254 DVLNDIQYSGSKNENEKKQKEKSLEKDLALLYSGLRLQPKNIYELMNETGFKYEELTGML 313
Query: 69 LELDLAGRLCHHPEGKVS 86
L+L L G + E S
Sbjct: 314 LKLQLMGLVEQPSENYYS 331
>gi|323358535|ref|YP_004224931.1| transcriptional regulator [Microbacterium testaceum StLB037]
gi|323274906|dbj|BAJ75051.1| transcriptional regulator [Microbacterium testaceum StLB037]
Length = 366
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 24 NITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ T + R I +L ++ + I + G+ + L +L+ G L
Sbjct: 3 DTTPHQPLAAERRAHILSALHSDGAVRISQLTEDLGVATVTLRRDLAQLEKEGVLRRVHG 62
Query: 83 GKVSLTMHLPSPQ 95
G V+ P P+
Sbjct: 63 GAVAGENTPPRPE 75
>gi|170718737|ref|YP_001783925.1| DeoR family transcriptional regulator [Haemophilus somnus 2336]
gi|168826866|gb|ACA32237.1| transcriptional regulator, DeoR family [Haemophilus somnus 2336]
Length = 250
Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I Q +N+ ++++D+ + + L +LD G + G VS
Sbjct: 1 MSSRETLILQLINSSGKVNVNDLAKQFDVSVETIRRDLTDLDKRGLIHRVHGGAVSR 57
>gi|113461589|ref|YP_719658.1| L-fucose operon activator [Haemophilus somnus 129PT]
gi|112823632|gb|ABI25721.1| L-fucose operon activator [Haemophilus somnus 129PT]
Length = 250
Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 32 TQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I Q +N+ ++++D+ + + L +LD G + G VS
Sbjct: 1 MSSRETLILQLINSSGKVNVNDLAKQFDVSVETIRRDLTDLDKRGLIHRVHGGAVSR 57
>gi|56963041|ref|YP_174768.1| DeoR family transcriptional regulator [Bacillus clausii KSM-K16]
gi|56909280|dbj|BAD63807.1| DeoR family transcriptional regulator [Bacillus clausii KSM-K16]
Length = 254
Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +I L N + I ++I TG + L EL+ +L G L P
Sbjct: 7 QEKILALLAKNEVVKIQELIVETGASESTIRRDLTELEQRNKLKRIHGGATLLKKMRDEP 66
>gi|289763072|ref|ZP_06522450.1| smf family protein [Mycobacterium tuberculosis GM 1503]
gi|289710578|gb|EFD74594.1| smf family protein [Mycobacterium tuberculosis GM 1503]
Length = 308
Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 224 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 283
Query: 80 HPE 82
Sbjct: 284 RDG 286
>gi|319902764|ref|YP_004162492.1| hypothetical protein Bache_2972 [Bacteroides helcogenes P 36-108]
gi|319417795|gb|ADV44906.1| hypothetical protein Bache_2972 [Bacteroides helcogenes P 36-108]
Length = 72
Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 35 ERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ RI ++ + ++ II H+G + VY L EL+ G L
Sbjct: 9 DTQRIMDYISSFPEAVSVESIILHSGADKLRVYPALFELEQNGWLA 54
>gi|284990922|ref|YP_003409476.1| IclR family transcriptional regulator [Geodermatophilus obscurus
DSM 43160]
gi|284064167|gb|ADB75105.1| transcriptional regulator, IclR family [Geodermatophilus obscurus
DSM 43160]
Length = 255
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRI-KQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLEL 71
+ + T++ P + + Q+L + + ++ GI P + VL L
Sbjct: 2 PEPSATESGTAASSPAPGSTAKALVVLQALAEDGGAVQLAELARRCGISKPTAHRVLAGL 61
Query: 72 DLAGRLCHHPEGKVSL 87
+ H G+ SL
Sbjct: 62 RALAWVRAHEGGRYSL 77
>gi|108798955|ref|YP_639152.1| DNA processing protein DprA, putative [Mycobacterium sp. MCS]
gi|119868070|ref|YP_938022.1| DNA protecting protein DprA [Mycobacterium sp. KMS]
gi|108769374|gb|ABG08096.1| DNA protecting protein DprA [Mycobacterium sp. MCS]
gi|119694159|gb|ABL91232.1| DNA protecting protein DprA [Mycobacterium sp. KMS]
Length = 376
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLV 67
+ + T T ER RI +L D++ GI A V
Sbjct: 295 ELVGRMGELPPVEAGPATPLDGLTDAER-RIYDALPKRGARSADEVAVAAGIPAYQVVGP 353
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
L L++AG + H G+ +
Sbjct: 354 LAMLEVAGLVV-HEGGRWRMA 373
>gi|296243078|ref|YP_003650565.1| transcriptional regulator TrmB [Thermosphaera aggregans DSM
11486]
gi|296095662|gb|ADG91613.1| transcriptional regulator, TrmB [Thermosphaera aggregans DSM
11486]
Length = 140
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ P + D+ + V+ L L+ G + P G V
Sbjct: 22 SREPRGVRDVARALNMPVSSVHYHLKRLEELGVIARAPGGYV 63
>gi|228953098|ref|ZP_04115158.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228806604|gb|EEM53163.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 194
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R RI + LN I ++ + + L ++ G L G + LT
Sbjct: 7 RERILELLNTDGRVIAKELAERFEMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|229070246|ref|ZP_04203497.1| Transcriptional regulator, DeoR [Bacillus cereus F65185]
gi|228712864|gb|EEL64788.1| Transcriptional regulator, DeoR [Bacillus cereus F65185]
Length = 254
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R RI + LN I ++ + + L ++ G L G + LT
Sbjct: 7 RERILELLNTDGRVIAKELAERFEMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|229079957|ref|ZP_04212488.1| Transcriptional regulator, DeoR [Bacillus cereus Rock4-2]
gi|228703336|gb|EEL55791.1| Transcriptional regulator, DeoR [Bacillus cereus Rock4-2]
Length = 254
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R RI + LN I ++ + + L ++ G L G + LT
Sbjct: 7 RERILELLNTDGRVIAKELAERFEMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|206971794|ref|ZP_03232743.1| transcriptional regulator, DeoR family [Bacillus cereus AH1134]
gi|206733179|gb|EDZ50352.1| transcriptional regulator, DeoR family [Bacillus cereus AH1134]
Length = 261
Score = 37.5 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R RI + LN I ++ + + L ++ G L G + LT
Sbjct: 7 RERILELLNTDGRVIAKELAERFEMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|238916740|ref|YP_002930257.1| DNA processing protein [Eubacterium eligens ATCC 27750]
gi|238872100|gb|ACR71810.1| DNA processing protein [Eubacterium eligens ATCC 27750]
Length = 379
Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +N P+ ++ I++++ I +LLEL+L G + +
Sbjct: 328 VYSQINLFPVSLETIVNNSRISLVEAEGILLELELDGLIEEVSKNYY 374
>gi|315185685|gb|EFU19452.1| transcriptional regulator, ArsR family [Spirochaeta thermophila
DSM 6578]
Length = 313
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R+ I L ++++ I + V + L+ AG +
Sbjct: 24 SEIRINILNLLTTETLNVNQIAERLKLPQSTVATNIAILEKAGLIE 69
>gi|307719148|ref|YP_003874680.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
6192]
gi|306532873|gb|ADN02407.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
6192]
Length = 313
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R+ I L ++++ I + V + L+ AG +
Sbjct: 24 SEIRINILNLLTTETLNVNQIAERLKLPQSTVATNIAILEKAGLIE 69
>gi|218289346|ref|ZP_03493580.1| transcriptional regulator, DeoR family [Alicyclobacillus
acidocaldarius LAA1]
gi|218240452|gb|EED07633.1| transcriptional regulator, DeoR family [Alicyclobacillus
acidocaldarius LAA1]
Length = 256
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 34 CERVR-IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
ER R I Q LN I + ++ + V L L++ G+L G V +
Sbjct: 4 AERQRAILQYLNERGSIRVKELSRMFSVTEETVRRDLHILEMEGKLRRSHGGAVRIDDDT 63
Query: 92 PS 93
P+
Sbjct: 64 PA 65
>gi|317475984|ref|ZP_07935239.1| leucyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
gi|316907916|gb|EFV29615.1| leucyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
Length = 74
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 35 ERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ +I + + +DDII ++G + VY L EL+ G L
Sbjct: 7 DTQKIIDYIASFYGAVSVDDIIQNSGADKLRVYPALFELEQNGFLE 52
>gi|309774980|ref|ZP_07669997.1| transcriptional regulator, DeoR family [Erysipelotrichaceae
bacterium 3_1_53]
gi|308917257|gb|EFP62980.1| transcriptional regulator, DeoR family [Erysipelotrichaceae
bacterium 3_1_53]
Length = 253
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
IH+ D+ I + L+EL+ G++ G V
Sbjct: 20 IHVRDVAKQLNISETTIRRDLMELEQEGKIRRVHGGAVR 58
>gi|315231572|ref|YP_004072008.1| transcriptional regulator [Thermococcus barophilus MP]
gi|315184600|gb|ADT84785.1| predicted transcription regulator [Thermococcus barophilus MP]
Length = 175
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PE 82
+ P+ + +I TG V L L+ G + P
Sbjct: 38 DEPLSLGEIAEKTGYSISHVSSALKLLESVGLVTRIKKPG 77
>gi|126434555|ref|YP_001070246.1| DNA protecting protein DprA [Mycobacterium sp. JLS]
gi|126234355|gb|ABN97755.1| DNA protecting protein DprA [Mycobacterium sp. JLS]
Length = 376
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLV 67
+ + T T ER RI +L D++ GI A V
Sbjct: 295 ELVGRMGELPPVEAGPATPLDGLTDAER-RIYDALPKRGARSADEVAVAAGIPAYQVVGP 353
Query: 68 LLELDLAGRLCHHPEGKVSLT 88
L L++AG + H G+ +
Sbjct: 354 LAMLEVAGLVV-HEGGRWRMA 373
>gi|167043468|gb|ABZ08165.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_APKG2H5]
Length = 1763
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 30 EYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ C R+++ L + P + V VL EL++ +
Sbjct: 995 DPLDCLRLKLLDMLGSEGPQTSVALCERLPFPPAQVDSVLQELEMRNLV 1043
>gi|118469804|ref|YP_887727.1| IclR family protein regulator [Mycobacterium smegmatis str. MC2
155]
gi|118171091|gb|ABK71987.1| probable IclR family protein regulator [Mycobacterium smegmatis
str. MC2 155]
Length = 260
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNV---PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+RI L P + +I G+ V + L+ G
Sbjct: 2 ADEAERAAGNSPAVTRSIRILDLLAEARGVPRTLTEIARELGLAKSSVSNLCAALEEGGL 61
Query: 77 LCHHPEGKV 85
+ G +
Sbjct: 62 VRRSTGGYL 70
>gi|326436689|gb|EGD82259.1| hypothetical protein PTSG_02929 [Salpingoeca sp. ATCC 50818]
Length = 826
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ P + F+ Q H T P E +L D ++HHTG+
Sbjct: 121 LAPIQRYDPFTRQPAVGHEPEPYTTAAPPPAHGEDDE--AALGP----FDVLVHHTGM-L 173
Query: 62 PVVYLVL 68
+V +L
Sbjct: 174 ELVRALL 180
>gi|323704781|ref|ZP_08116358.1| transcriptional regulator, DeoR family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535707|gb|EGB25481.1| transcriptional regulator, DeoR family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 275
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R++I + L+ I + ++ G+ + L L++ G + G + L H
Sbjct: 7 RMKIAEILSKDKSITVSELSEILGVSESTIRRDLKMLEIDGFIQRTHGGAI-LNTHT 62
>gi|28572469|ref|NP_789249.1| DNA processing protein [Tropheryma whipplei TW08/27]
gi|28410601|emb|CAD66987.1| putative DNA processing protein [Tropheryma whipplei TW08/27]
Length = 381
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
I Q R+R+ +L+ I +I +G+ V ++ L+L+G+
Sbjct: 307 APLVVSPIQKDSFGLQASRIRVIDALSKKYDRDISEICRLSGMLFDDVSSLMRLLELSGQ 366
Query: 77 LCHHPEG 83
+ G
Sbjct: 367 VIRSGSG 373
>gi|28493420|ref|NP_787581.1| nucleotide-binding protein [Tropheryma whipplei str. Twist]
gi|28476461|gb|AAO44550.1| nucleotide-binding protein [Tropheryma whipplei str. Twist]
Length = 399
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
I Q R+R+ +L+ I +I +G+ V ++ L+L+G+
Sbjct: 325 APLVVSPIQKDSFGLQASRIRVIDALSKKYDRDISEICRLSGMLFDDVSSLMRLLELSGQ 384
Query: 77 LCHHPEG 83
+ G
Sbjct: 385 VIRSGSG 391
>gi|78185425|ref|YP_377860.1| SMF protein [Synechococcus sp. CC9902]
gi|78169719|gb|ABB26816.1| SMF protein [Synechococcus sp. CC9902]
Length = 355
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ + ++ + I+ + G + LL L+ G++
Sbjct: 298 ASASVAQDALLAAIGDGA-SIETLQRRLGPRGHQLSSRLLALECEGQVVCEAG 349
>gi|113460558|ref|YP_718622.1| DNA processing chain A [Haemophilus somnus 129PT]
gi|112822601|gb|ABI24690.1| DNA processing chain A [Haemophilus somnus 129PT]
Length = 368
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 10 FFSSQSDTNHTKNINITHYPE---YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
F K I P + + P+ +D++ + +G+
Sbjct: 288 PFMHYERQLTAKQIETQFPPAYKLPASPTYPELYAHIGYTPVGLDELSNKSGLSVDT 344
>gi|327311942|ref|YP_004338839.1| regulatory protein ArsR [Thermoproteus uzoniensis 768-20]
gi|326948421|gb|AEA13527.1| regulatory protein ArsR [Thermoproteus uzoniensis 768-20]
Length = 83
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R +I L P +I+ I GI+ V L L+ G + +
Sbjct: 2 RSKILMLLKERPTNINQISKELGIDYKTVKYHLSLLEKNGLVKRL-GMRY 50
>gi|317488107|ref|ZP_07946684.1| DNA protecting protein DprA [Eggerthella sp. 1_3_56FAA]
gi|316912815|gb|EFV34347.1| DNA protecting protein DprA [Eggerthella sp. 1_3_56FAA]
Length = 227
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDI----IHHTGIEAPV--VYLVL 68
++ T P + + +L P+ ++ + G E + L
Sbjct: 147 LKQETVPSVERTGAPRADEPS-NPVADALRAEPLSMEQLYAIAASSCGGEDARSWLMERL 205
Query: 69 LELDLAGRLCHHPEGK 84
+E +LAG + HP+G+
Sbjct: 206 VEAELAGAVARHPDGR 221
>gi|307326907|ref|ZP_07606098.1| transcriptional regulator, DeoR family [Streptomyces
violaceusniger Tu 4113]
gi|306887443|gb|EFN18438.1| transcriptional regulator, DeoR family [Streptomyces
violaceusniger Tu 4113]
Length = 253
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 33 QCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ L + I +I GI L EL AGRL G V+
Sbjct: 4 ETRHEKLLSILGEEGVLPIGEIATRLGISEATARRDLTELGRAGRLTRVYGGAVA 58
>gi|299131761|ref|ZP_07024956.1| transcriptional regulator, ArsR family [Afipia sp. 1NLS2]
gi|298591898|gb|EFI52098.1| transcriptional regulator, ArsR family [Afipia sp. 1NLS2]
Length = 128
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L ++++ + P V L L+ AG +
Sbjct: 12 ADPTRRAILARLALGETSVNELAEPFDMSLPAVSKHLKVLEGAGLITR 59
>gi|83312852|ref|YP_423116.1| Zn peptidase [Magnetospirillum magneticum AMB-1]
gi|82947693|dbj|BAE52557.1| Predicted Zn peptidase [Magnetospirillum magneticum AMB-1]
Length = 171
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 6/59 (10%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL----AGRLCHHPEGKVSLTMHL 91
+ +++ P+ +D + G++ L+ ++ +G++ G+ ++++
Sbjct: 12 EIVSDFMSSAPVDLDAMARALGLDVT------LDAEIPPDVSGKIERVAGGRFRVSINQ 64
>gi|160880760|ref|YP_001559728.1| ArsR family transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160429426|gb|ABX42989.1| transcriptional regulator, ArsR family [Clostridium
phytofermentans ISDg]
Length = 192
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
T++ I + R+ I +SL P++++ + + + P + L +L+ AG +
Sbjct: 9 TESDAIKLFKSLADKSRLMILKSLAEQPMYVELLANRLNLTPPTISFHLKKLEEAGVV 66
>gi|91780801|ref|YP_556008.1| IclR family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91693461|gb|ABE36658.1| transcriptional regulator, IclR family [Burkholderia xenovorans
LB400]
Length = 276
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + S N + R ++ ++L N P+ + + G+
Sbjct: 1 MRTDELSRTVYRNANAATDTGTRTPPRAPVRAMQVLEALANSPMSLGALSVELGMPKTSA 60
Query: 65 YLVLLELDLAGRLCHHPEG 83
+L L+ A + G
Sbjct: 61 MHMLRALEAAAYVRRTAAG 79
>gi|329955166|ref|ZP_08296123.1| toxin-antitoxin system, toxin component, RelE domain protein
[Bacteroides clarus YIT 12056]
gi|328526165|gb|EGF53184.1| toxin-antitoxin system, toxin component, RelE domain protein
[Bacteroides clarus YIT 12056]
Length = 77
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ +DDII ++G + VY L EL+ G +
Sbjct: 24 VAVDDIIRNSGADKLRVYPALFELEHDGYIE 54
>gi|259089742|gb|ACV91704.1| putative transcriptional regulator, DeoR family [Klebsiella
pneumoniae]
Length = 253
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|238894666|ref|YP_002919400.1| putative transcriptional regulator [Klebsiella pneumoniae
NTUH-K2044]
gi|330006446|ref|ZP_08305610.1| transcriptional regulator, DeoR family [Klebsiella sp. MS 92-3]
gi|238546982|dbj|BAH63333.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|328535844|gb|EGF62276.1| transcriptional regulator, DeoR family [Klebsiella sp. MS 92-3]
Length = 253
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|70727195|ref|YP_254111.1| hypothetical protein SH2196 [Staphylococcus haemolyticus
JCSC1435]
gi|68447921|dbj|BAE05505.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 251
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + ++I TG A V L +L GRL G
Sbjct: 20 LTLQELIERTGCSASTVRRDLSKLQQQGRLQRVHGG 55
>gi|94986442|ref|YP_605806.1| DNA processing protein DprA, putative [Deinococcus geothermalis DSM
11300]
gi|94556723|gb|ABF46637.1| DNA protecting protein DprA [Deinococcus geothermalis DSM 11300]
Length = 358
Score = 37.5 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
E+ R +L P +DD+ TG+ P + L+ L L G
Sbjct: 295 EAPAAPTSDLPPEQARTYAAL-TTPATLDDLQAATGLTLPDLQTALVMLQLLGLAEEVGG 353
>gi|319786294|ref|YP_004145769.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317464806|gb|ADV26538.1| DEAD/H associated domain protein [Pseudoxanthomonas suwonensis 11-1]
Length = 1498
Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 8/75 (10%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRI------KQSLNNVPIHIDDIIHHTGIEAPVV 64
Q++ + E R+ +L P+ + + + +
Sbjct: 992 LHPQANQEPVPRVPEEFARVPWSTEDARVALLRSRLTALG--PVTVTALAASLALPPSAI 1049
Query: 65 YLVLLELDLAGRLCH 79
LL L G
Sbjct: 1050 EQALLALQTQGYAMQ 1064
>gi|290509599|ref|ZP_06548970.1| DeoR family transcriptional regulator [Klebsiella sp. 1_1_55]
gi|289778993|gb|EFD86990.1| DeoR family transcriptional regulator [Klebsiella sp. 1_1_55]
Length = 253
Score = 37.5 bits (86), Expect = 0.66, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|325264543|ref|ZP_08131273.1| putative transcriptional regulator, IclR family [Clostridium sp.
D5]
gi|324030205|gb|EGB91490.1| putative transcriptional regulator, IclR family [Clostridium sp.
D5]
Length = 258
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 38 RIKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ L P+ +++I + + + +L L++ G + +G+
Sbjct: 17 EVLDILRKERSPLGVNEIAKNCELNPSTAFRILKTLEVNGWVYQCMDGRY 66
>gi|219883315|ref|YP_002478476.1| transcriptional regulator, ArsR family [Arthrobacter
chlorophenolicus A6]
gi|219862160|gb|ACL42500.1| transcriptional regulator, ArsR family [Arthrobacter
chlorophenolicus A6]
Length = 287
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 30 EYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+RI ++LN P +++ + +V L L+ AG + G V L
Sbjct: 199 AAASTPSLRILRALNLLQAPQRPEELAEGLELCPSIVSHELSTLEAAGII-RTAGGHVHL 257
>gi|62390392|ref|YP_225794.1| ArsR family regulatory protein [Corynebacterium glutamicum ATCC
13032]
gi|41411213|emb|CAF21518.2| Bacterial regulatory proteins, ArsR family [Corynebacterium
glutamicum ATCC 13032]
Length = 119
Score = 37.5 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 14 QSDTNHTKNINITHYPEY----TQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYL 66
T + HY + R+RI L P+ ++++ G+ P +
Sbjct: 17 TLATGPLSSDESEHYADLFKVLGDPVRLRILSQLAAGGCGPVSVNELTDLMGLSQPTISH 76
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHLPS 93
L ++ AG L PEG+V L P
Sbjct: 77 HLKKMTEAGFLDRVPEGRVVLHRVRPE 103
>gi|297526361|ref|YP_003668385.1| type III restriction protein res subunit [Staphylothermus
hellenicus DSM 12710]
gi|297255277|gb|ADI31486.1| type III restriction protein res subunit [Staphylothermus
hellenicus DSM 12710]
Length = 612
Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCE-----RVRIKQSLNNVPIHIDDIIHHTGIEA 61
+ + + +++ E + R RI L+ P+ ++ I TG+
Sbjct: 400 DMDSLLDALELARKNGVDVPIDEETLEALWRRTTRNRILSVLSGKPMPLEWISEITGMPR 459
Query: 62 PVVYLVLLELDLAGRL 77
+V + L+ G +
Sbjct: 460 DLVEKAIKRLEDKGLV 475
>gi|293401838|ref|ZP_06645979.1| transcriptional regulator, DeoR family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291304790|gb|EFE46038.1| transcriptional regulator, DeoR family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 254
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 38 RIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS------LTMH 90
RI + + + I +++ + L+EL+ G + G + L+
Sbjct: 9 RIMEVIEEQSFVTISELMEFLNASKSTITRDLMELERQGLIQRERGGAIRKELPQTLSSS 68
Query: 91 LPSP 94
P
Sbjct: 69 TDLP 72
>gi|288935563|ref|YP_003439622.1| DeoR family transcriptional regulator [Klebsiella variicola
At-22]
gi|288890272|gb|ADC58590.1| transcriptional regulator, DeoR family [Klebsiella variicola
At-22]
Length = 253
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|206580138|ref|YP_002238578.1| transcriptional regulator, DeoR family [Klebsiella pneumoniae
342]
gi|206569196|gb|ACI10972.1| transcriptional regulator, DeoR family [Klebsiella pneumoniae
342]
Length = 253
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|110635404|ref|YP_675612.1| ArsR family transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110286388|gb|ABG64447.1| transcriptional regulator, ArsR family [Chelativorans sp. BNC1]
Length = 117
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
H + R I L+ ++++ I P V L L+ AG +
Sbjct: 3 HADDPLSVTLSALADPTRRAILARLSQGAATVNELAEPFDISLPSVSRHLKVLEGAGLIS 62
Query: 79 H 79
Sbjct: 63 R 63
>gi|288932364|ref|YP_003436424.1| hypothetical protein Ferp_2012 [Ferroglobus placidus DSM 10642]
gi|288894612|gb|ADC66149.1| conserved hypothetical protein [Ferroglobus placidus DSM 10642]
Length = 313
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCH--HPEG--KVSLTMHLPSP 94
+++ G V VL EL+ G + +V L P P
Sbjct: 23 ELVRRIGASKSTVSDVLSELEGKGIVVREKEAGKSLRVWLAEFYPKP 69
>gi|156547761|ref|XP_001605800.1| PREDICTED: similar to GH15213p [Nasonia vitripennis]
Length = 580
Score = 37.5 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 16/87 (18%)
Query: 22 NINITHYPEYTQCER-------------VRIKQSLN---NVPIHIDDIIHHTGIEAPVVY 65
I + +I + + P+ I ++ G +A V
Sbjct: 155 EEPIELPVRPLSTDETILGGAQIIELTTEKILELIESAYPNPLTIYNLAEDHGWDADAVA 214
Query: 66 LVLLELDLAGRLCHHPEGKVSLTMHLP 92
L EL G + G + +H
Sbjct: 215 EKLAELQKKGLVVAMENGAFTRVVHQD 241
>gi|329910748|ref|ZP_08275374.1| putative transcriptional regulator (IclR family)
[Oxalobacteraceae bacterium IMCC9480]
gi|327546084|gb|EGF31151.1| putative transcriptional regulator (IclR family)
[Oxalobacteraceae bacterium IMCC9480]
Length = 261
Score = 37.5 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 39 IKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ +L P+ + + TG+ + +L +L L + G L M L
Sbjct: 23 LLDALARYPDPVSLKQLSADTGLHPSTAHRILNDLVLKRFVERAEPGAYRLGMRL 77
>gi|323342665|ref|ZP_08082897.1| cadmium efflux system accessory protein [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463777|gb|EFY08971.1| cadmium efflux system accessory protein [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 117
Score = 37.5 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
R+RI L++ + +DD+ G+ V L L
Sbjct: 41 ADPTRLRIFTILSHQTVCVDDLAEILGMTQSAVSHQLASL 80
>gi|222109030|ref|YP_002551296.1| transcriptional repressor [Agrobacterium radiobacter K84]
gi|221727952|gb|ACM31002.1| transcriptional repressor [Agrobacterium radiobacter K84]
Length = 257
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I + H I V L E++ AG + G V++
Sbjct: 22 VDIRTLTEHLDISVATVRRDLGEMEAAGLVRRTHGGAVNIN 62
>gi|187764300|gb|ACD36006.1| AccR' [Agrobacterium radiobacter K84]
Length = 257
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I + H I V L E++ AG + G V++
Sbjct: 22 VDIRTLTEHLDISVATVRRDLGEMEAAGLVRRTHGGAVNIN 62
>gi|160902108|ref|YP_001567689.1| DeoR family transcriptional regulator [Petrotoga mobilis SJ95]
gi|160359752|gb|ABX31366.1| transcriptional regulator, DeoR family [Petrotoga mobilis SJ95]
Length = 247
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R I + L + +++D+I + T + V + L G++ G V L
Sbjct: 7 RKIILELLHSKEIVYLDEIKNKTNVSIATVRRDVKTLATEGQVEILSGGAVKL 59
>gi|320100949|ref|YP_004176541.1| regulatory protein, MarR [Desulfurococcus mucosus DSM 2162]
gi|319753301|gb|ADV65059.1| regulatory protein, MarR [Desulfurococcus mucosus DSM 2162]
Length = 163
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
++ ++ + ID + TG+ V L EL+ G + +LT
Sbjct: 6 KLLSLMDENGVAIDKLSSETGLSTRTVKRYLRELEEKGLVEQ-RGELYALT 55
>gi|213966252|ref|ZP_03394436.1| regulatory protein, ArsR [Corynebacterium amycolatum SK46]
gi|213951104|gb|EEB62502.1| regulatory protein, ArsR [Corynebacterium amycolatum SK46]
Length = 124
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+RI SL H+ ++ G+ P++Y L L+ AG +
Sbjct: 37 SEPRLRIIASLETDSTHVSELARRLGMSRPLLYQHLNRLEAAGLIES 83
>gi|16124412|ref|NP_418976.1| ArsR family transcriptional regulator [Caulobacter crescentus
CB15]
gi|221233095|ref|YP_002515531.1| ArsR family transcriptional regulator [Caulobacter crescentus
NA1000]
gi|13421270|gb|AAK22144.1| transcriptional regulator, ArsR family [Caulobacter crescentus
CB15]
gi|220962267|gb|ACL93623.1| transcriptional regulator, ArsR family [Caulobacter crescentus
NA1000]
Length = 121
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 18/69 (26%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ R I L P + ++ + L L+ +G +
Sbjct: 28 AEQSETLDAVFQALADPTRRAILSRLGQGPASVGELAAPHDMALTSFMKHLKILERSGWI 87
Query: 78 CHHPEGKVS 86
G+V
Sbjct: 88 VSAKTGRVR 96
>gi|311104229|ref|YP_003977082.1| transcriptional regulator family protein 6 [Achromobacter
xylosoxidans A8]
gi|310758918|gb|ADP14367.1| bacterial transcriptional regulator family protein 6
[Achromobacter xylosoxidans A8]
Length = 287
Score = 37.1 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERV-RIKQSL--NNVPIHIDDIIHHTGIEAPVVYL 66
++++ + H ER R+ +L P+ + ++ TG+ A +
Sbjct: 4 LPTTRNALDAETEGASAHPIAIQVIERAMRLLDALAAQPDPVTLKELSATTGLHASTAHR 63
Query: 67 VLLELDLAGRLCHHPEGKVSLTMHL 91
+L +L + + G L M L
Sbjct: 64 ILNDLVVGRYVERVDNGLYQLGMRL 88
>gi|171321384|ref|ZP_02910338.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
gi|171093342|gb|EDT38536.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
Length = 406
Score = 37.1 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 20/95 (21%), Gaps = 1/95 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGI 59
M+ P + L + + G
Sbjct: 297 MLRPLANVTATPHGFALEPLGPRETVVLARPVDDRHAAVLALLADGEAWSSSALALALGA 356
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
V L L AG++ G+ M P P
Sbjct: 357 SQRTVQRALDTLAEAGKVQALGRGRARRWMTPPLP 391
>gi|320335069|ref|YP_004171780.1| hypothetical protein Deima_2480 [Deinococcus maricopensis DSM
21211]
gi|319756358|gb|ADV68115.1| hypothetical protein Deima_2480 [Deinococcus maricopensis DSM
21211]
Length = 158
Score = 37.1 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 34 CERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ +L++ P ++ ++ TG+ + L L GR+ P
Sbjct: 16 ANEKLVLAALDSKPEWVETELAKTTGLALSHLRAALASLLDQGRVRRLPG 65
>gi|307595217|ref|YP_003901534.1| IclR family transcriptional regulator [Vulcanisaeta distributa
DSM 14429]
gi|307550418|gb|ADN50483.1| transcriptional regulator, IclR family [Vulcanisaeta distributa
DSM 14429]
Length = 199
Score = 37.1 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+R ++ + + + ++I + V+ L L G L G
Sbjct: 37 DRAKLLKLIAFGVVSPTELIRRLNMPKAKVFRYLNALIKHGWLVRKDGGYY 87
>gi|318057676|ref|ZP_07976399.1| DeoR family transcriptional regulator [Streptomyces sp. SA3_actG]
Length = 303
Score = 37.1 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 8/82 (9%), Positives = 22/82 (26%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P+ + + +R ++ + + ++ + G+
Sbjct: 26 PRAGTRQPDAPRADAPRPGTPAPDRLGAPERQREIVRAAREGGSVEVNALATRLGVAKET 85
Query: 64 VYLVLLELDLAGRLCHHPEGKV 85
V L L+ G + G
Sbjct: 86 VRRDLQALEDHGLVRRTHGGAY 107
>gi|162449397|ref|YP_001611764.1| ArsR family transcriptional regulator [Sorangium cellulosum 'So ce
56']
gi|161159979|emb|CAN91284.1| transcriptional regulator, ArsR family [Sorangium cellulosum 'So ce
56']
Length = 145
Score = 37.1 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ P+ + F + + + T + R I L P + ++ I
Sbjct: 18 LIAPRPSLD-FRASIHNHMVVDSLSTTLAALSDATRRAILVRLKTGPASVHELAQPFQIS 76
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ L L+ AG + +G+ ++ P+P
Sbjct: 77 QQAISKHLATLERAGLIEKRRDGRQNVCQLNPAP 110
>gi|134094060|ref|YP_001099135.1| IclR family transcriptional regulator [Herminiimonas
arsenicoxydans]
gi|133737963|emb|CAL61008.1| putative transcriptional regulator (IclR family) [Herminiimonas
arsenicoxydans]
Length = 245
Score = 37.1 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 39 IKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ +L P+ + ++ TG+ + +L +L L + G L M L
Sbjct: 4 LLDALATYPDPVSLKELSRVTGLHPSTAHRILNDLVLKRFVDRSEPGAYRLGMRL 58
>gi|254292747|ref|YP_003058770.1| ArsR family transcriptional regulator [Hirschia baltica ATCC
49814]
gi|254041278|gb|ACT58073.1| transcriptional regulator, ArsR family [Hirschia baltica ATCC
49814]
Length = 342
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R R+ L+ + + ++ G P + + L AG + PEG
Sbjct: 15 AAGETTRARVLALLSRGELSVGELAQVLGQSQPRLSRHMKFLTSAGLVERMPEG 68
>gi|77456247|ref|YP_345752.1| SMF protein [Pseudomonas fluorescens Pf0-1]
gi|77380250|gb|ABA71763.1| DNA protecting protein DprA [Pseudomonas fluorescens Pf0-1]
Length = 366
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + L+ P + + +G P V L EL++ GR +
Sbjct: 315 PLLRLLHAAPHTSEGLADSSGWALPKVLAALTELEMDGRAVCENGRWFAR 364
>gi|323496962|ref|ZP_08101990.1| Smf protein [Vibrio sinaloensis DSM 21326]
gi|323318036|gb|EGA71019.1| Smf protein [Vibrio sinaloensis DSM 21326]
Length = 373
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ ++ + +D + T I V + LLEL+L G + G +
Sbjct: 319 QLLANVGSKATPVDILASRTNIPVQEVMMQLLELELLGYVVAVSGGYI 366
>gi|261250602|ref|ZP_05943177.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio orientalis CIP 102891]
gi|260939171|gb|EEX95158.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio orientalis CIP 102891]
Length = 371
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ ++ + +D + + T I V + LLEL+L G + G +
Sbjct: 320 LLANVGSKATPVDILANRTNIPVQEVMMQLLELELLGHVVAVSGGYIR 367
>gi|167584176|ref|ZP_02376564.1| DEAD/DEAH box helicase [Burkholderia ubonensis Bu]
Length = 311
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+HP + R R+ P+ +D I G+
Sbjct: 20 LHPDARC---TPALKVPAACAEPWEADAALVDVIRARLT---GFGPLALDAIARPLGLPV 73
Query: 62 PVVYLVLLELDLAGRLCH 79
V L L+ G +
Sbjct: 74 AAVTTALAVLEQEGYVMR 91
>gi|258510712|ref|YP_003184146.1| transcriptional regulator, DeoR family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477438|gb|ACV57757.1| transcriptional regulator, DeoR family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 258
Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 34 CERVR-IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
ER R I Q LN I + ++ + V L L++ G+L G V +
Sbjct: 6 AERQRAILQYLNERGSIRVKELSRMFSVTEETVRRDLHILEMEGKLRRSHGGAVRIDDDT 65
Query: 92 PS 93
P+
Sbjct: 66 PA 67
>gi|289581368|ref|YP_003479834.1| MarR family transcriptional regulator [Natrialba magadii ATCC
43099]
gi|289530921|gb|ADD05272.1| transcriptional regulator, MarR family [Natrialba magadii ATCC
43099]
Length = 502
Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 34 CERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+V + ++ + + +D + T + V + EL+ G +
Sbjct: 5 AAQVAVLEAASADEATSVDALAEATDLPPETVTGAVFELEDEGLVT 50
>gi|225574889|ref|ZP_03783499.1| hypothetical protein RUMHYD_02967 [Blautia hydrogenotrophica DSM
10507]
gi|225037895|gb|EEG48141.1| hypothetical protein RUMHYD_02967 [Blautia hydrogenotrophica DSM
10507]
Length = 296
Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ L+ P ++ +I+ +T L EL+L G +
Sbjct: 244 VYSGLDLQPKNLHEIVEYTHFSVTKTINCLTELELEGLVER 284
>gi|240948039|ref|ZP_04752456.1| Smf protein [Actinobacillus minor NM305]
gi|240297655|gb|EER48132.1| Smf protein [Actinobacillus minor NM305]
Length = 382
Score = 37.1 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ +I + PI IDD+ ++ + + LL L+L +
Sbjct: 317 PSKNAKDLPEMTACQQQIFTQIGFEPIAIDDLAKALTLDVSALLVELLNLELLSVIKSVN 376
Query: 82 EGKVS 86
G V
Sbjct: 377 GGYVR 381
>gi|282853012|ref|ZP_06262349.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|282582465|gb|EFB87845.1| transcriptional regulator, DeoR family [Propionibacterium acnes
J139]
gi|314965725|gb|EFT09824.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL082PA2]
gi|314982866|gb|EFT26958.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA3]
gi|315091177|gb|EFT63153.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL110PA4]
gi|315094405|gb|EFT66381.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL060PA1]
gi|315105128|gb|EFT77104.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL050PA2]
gi|327328903|gb|EGE70663.1| transcriptional regulator, DeoR family [Propionibacterium acnes
HL103PA1]
Length = 268
Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVKSTGVSAMTIYRDLASLESSGVLQRHRGRVVAVA 69
>gi|88601333|ref|YP_501511.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
gi|88186795|gb|ABD39792.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
Length = 969
Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 27 HYPEYTQCERVRIKQSLNNVPI--HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E RI + L++ P I +I + +V L L + GR+ GK
Sbjct: 2 PSQESDIATSSRILELLSDAPQGASIGEISSALNMNRNLVAKYLSILHMQGRVELRSYGK 61
Query: 85 VSL 87
V L
Sbjct: 62 VKL 64
>gi|260907247|ref|ZP_05915569.1| DNA protecting protein DprA [Brevibacterium linens BL2]
Length = 404
Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 2/83 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRI-KQSLNNV-PIHIDDIIHHTGIEAPVV 64
E+ P ER +I L+ + + + G+
Sbjct: 318 EEPTLFDDGRLTSEHPSTAASDPVDDLAEREKICVNVLSVTKALDVSTVASRAGLTVSNT 377
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
L L+LAG G V L
Sbjct: 378 LSALAVLELAGLSARRESGWVKL 400
>gi|301063674|ref|ZP_07204186.1| acetyltransferase, GNAT family [delta proteobacterium NaphS2]
gi|300442211|gb|EFK06464.1| acetyltransferase, GNAT family [delta proteobacterium NaphS2]
Length = 300
Score = 37.1 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ R+ L++ P+H D+ G+ A + L + + G + P
Sbjct: 33 QARLLYELSHASPLHAADMARDLGLSADYLSKTLSKFESEGLITRTP 79
>gi|256810409|ref|YP_003127778.1| TrmB family transcriptional regulator [Methanocaldococcus fervens
AG86]
gi|256793609|gb|ACV24278.1| transcriptional regulator, TrmB [Methanocaldococcus fervens AG86]
Length = 94
Score = 37.1 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
RV+I LN P +I ++ + PVVY L +L+ AG +
Sbjct: 16 PIRVKILYILNKQPKNIYELAKELNLSRPVVYAHLRKLENAGLVES 61
>gi|212632968|ref|YP_002309493.1| DNA processing protein DprA [Shewanella piezotolerans WP3]
gi|212554452|gb|ACJ26906.1| DNA processing protein DprA, putative [Shewanella piezotolerans
WP3]
Length = 366
Score = 37.1 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ ID+++ H+G +V LLEL+L G + P G V L
Sbjct: 313 ASLLASVGYETTTIDNVVEHSGKTIELVLEQLLELELQGWVTAVPGGYVRL 363
>gi|314922642|gb|EFS86473.1| DeoR-like helix-turn-helix protein [Propionibacterium acnes
HL001PA1]
Length = 268
Score = 37.1 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++D++ TG+ A +Y L L+ +G L H V++
Sbjct: 29 VSVEDLVKSTGVSAMTIYRDLASLESSGVLQRHRGRVVAVA 69
>gi|170289854|ref|YP_001736670.1| ArsR family transcriptional regulator [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170173934|gb|ACB06987.1| transcriptional regulator, ArsR family [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 173
Score = 37.1 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
R +I + L P+ + +I GI P + EL+ +G + H
Sbjct: 15 RRKIVKLLAMEPLTLSEIAERLGISQPAALKHIRELESSGIIEAH 59
>gi|163790392|ref|ZP_02184823.1| transcription regulator [Carnobacterium sp. AT7]
gi|159874296|gb|EDP68369.1| transcription regulator [Carnobacterium sp. AT7]
Length = 148
Score = 37.1 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG-----KVSL 87
+ + + I ++++ H+G++ + + L+ G + VSL
Sbjct: 42 AVLSFIKDEKISLNELAEHSGLDKSTLSRQVKNLEKKGFVMKESGKDKRFTYVSL 96
>gi|119383959|ref|YP_915015.1| regulatory protein, ArsR [Paracoccus denitrificans PD1222]
gi|119373726|gb|ABL69319.1| transcriptional regulator, ArsR family [Paracoccus denitrificans
PD1222]
Length = 117
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R I L P + + TG+ P V L L+ AG + +G+V
Sbjct: 20 ADPTRRAILMRLARGPAPVTQLAAPTGLRLPTVMRHLSVLEEAGLIATSKDGRVR 74
>gi|260187915|ref|ZP_05765389.1| hypothetical protein MtubCP_18099 [Mycobacterium tuberculosis
CPHL_A]
Length = 357
Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 273 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 332
Query: 80 HPE 82
Sbjct: 333 RDG 335
>gi|167771636|ref|ZP_02443689.1| hypothetical protein ANACOL_03008 [Anaerotruncus colihominis DSM
17241]
gi|167666276|gb|EDS10406.1| hypothetical protein ANACOL_03008 [Anaerotruncus colihominis DSM
17241]
Length = 415
Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + D++ G+ A L EL+L G G+
Sbjct: 356 PQARAVYAQLGARALERDELAALAGLGAAETLSALTELELTGFARVVAGGRY 407
>gi|229589794|ref|YP_002871913.1| putative IclR family regulatory protein [Pseudomonas fluorescens
SBW25]
gi|229361660|emb|CAY48540.1| putative IclR-family regulatory protein [Pseudomonas fluorescens
SBW25]
Length = 248
Score = 37.1 bits (85), Expect = 0.84, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 21/48 (43%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ + + + ++ TG+ + +++ L+ G + +G+ L
Sbjct: 28 MGDTALELAELAARTGLIKSTIMRLMVSLEDHGLITRLADGRYQLATE 75
>gi|317968710|ref|ZP_07970100.1| Smf family DNA processing protein [Synechococcus sp. CB0205]
Length = 399
Score = 37.1 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYP---EYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P ++ + P + +L ++ + H +
Sbjct: 313 PLLDPADLVKHLGSGPRSKPVRPPMPRAHATLLQREAALMGALGQGAT-LEQLSHSLRLS 371
Query: 61 APVVYLVLLELDLAGRLCHHPE 82
+ LL+L+LAG + P
Sbjct: 372 PVGISQRLLQLELAGLVRSAPG 393
>gi|325264903|ref|ZP_08131631.1| transcriptional regulator of sugar metabolism [Clostridium sp.
D5]
gi|324029892|gb|EGB91179.1| transcriptional regulator of sugar metabolism [Clostridium sp.
D5]
Length = 263
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +I + L + + +D + + + L +++ G L G V LT +P
Sbjct: 7 KSKILKLLQDEHSVSVDSLAITFNVSKETIRRDLRQMESEGLLTRTHGGAVPLTTAFTAP 66
>gi|57640516|ref|YP_182994.1| hypothetical protein TK0581 [Thermococcus kodakarensis KOD1]
gi|57158840|dbj|BAD84770.1| hypothetical protein [Thermococcus kodakarensis KOD1]
Length = 63
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
I+++L + P +++ TG+ A V L EL G +
Sbjct: 11 IQRALEDGPATFSELVRRTGLPAKEVASALDELGRKGAV 49
>gi|262044341|ref|ZP_06017406.1| DeoR family transcriptional regulator [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259038314|gb|EEW39520.1| DeoR family transcriptional regulator [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 253
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDFLKSHNLVTVDQLVVATNASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|218674520|ref|ZP_03524189.1| transcriptional regulator, ArsR family protein [Rhizobium etli
GR56]
Length = 121
Score = 37.1 bits (85), Expect = 0.88, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + +I + P V L L+ AG +
Sbjct: 27 SAPRRKILAYLSASGLTAGEIADRFSMSKPAVSQHLSILETAGLIRR 73
>gi|222109032|ref|YP_002551298.1| transcriptional repressor [Agrobacterium radiobacter K84]
gi|221727954|gb|ACM31004.1| transcriptional repressor [Agrobacterium radiobacter K84]
Length = 257
Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I ++ I V L EL+ AG L G VS+
Sbjct: 22 VAIRTLMDRFDISVATVRRDLGELEGAGLLRRTHGGAVSIN 62
>gi|187764298|gb|ACD36004.1| AccR [Agrobacterium radiobacter K84]
Length = 256
Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I ++ I V L EL+ AG L G VS+
Sbjct: 21 VAIRTLMDRFDISVATVRRDLGELEGAGLLRRTHGGAVSIN 61
>gi|15806439|ref|NP_295145.1| hypothetical protein DR_1422 [Deinococcus radiodurans R1]
gi|6459189|gb|AAF11001.1|AE001987_9 hypothetical protein DR_1422 [Deinococcus radiodurans R1]
Length = 190
Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINI-THYPEYTQCERVRIKQSLNNVPIHID-DIIHHTGI 59
+HP ++ + N E + + +L + P ++ ++ TG+
Sbjct: 1 MHPGAHRHEVQPKDGGESMFNPPTLEDLQETRRANEKLVLAALESKPEWVETELAKTTGL 60
Query: 60 EAPVVYLVLLELDLAGRLCHHPE 82
+ L L GR+ P
Sbjct: 61 ALSHLRAALASLLDQGRVRRLPG 83
>gi|259416398|ref|ZP_05740318.1| glycerol-3-phosphate regulon repressor [Silicibacter sp.
TrichCH4B]
gi|259347837|gb|EEW59614.1| glycerol-3-phosphate regulon repressor [Silicibacter sp.
TrichCH4B]
Length = 264
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I L + ++D+ G+ V L +L G+L G V ++
Sbjct: 7 QNEILSLLTQQDRVEVEDLARRFGVSLQTVRTDLRDLSARGQLSRVHGGAVRIS 60
>gi|222082729|ref|YP_002542094.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
gi|221727408|gb|ACM30497.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
Length = 308
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 34 CERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV + + L + P+++++I + V ++ L+ AG +
Sbjct: 23 PARVDMLRLLCSKGPLNVNEIARALDLPQSTVATGIMILEEAGLVE 68
>gi|88608661|ref|YP_506277.1| putative DNA processing protein DprA [Neorickettsia sennetsu str.
Miyayama]
gi|88600830|gb|ABD46298.1| putative DNA processing protein DprA [Neorickettsia sennetsu str.
Miyayama]
Length = 378
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ +I + +++ + + + H GI + L ++EL++ G++
Sbjct: 321 KAQILKKIDSTSVPMSQLAHELGISEKTLLLAIVELEIEGKITR 364
>gi|31794072|ref|NP_856565.1| hypothetical protein Mb2920c [Mycobacterium bovis AF2122/97]
gi|121638777|ref|YP_979001.1| hypothetical protein BCG_2917c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224991269|ref|YP_002645958.1| hypothetical protein JTY_2912 [Mycobacterium bovis BCG str. Tokyo
172]
gi|31619667|emb|CAD96607.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121494425|emb|CAL72906.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774384|dbj|BAH27190.1| hypothetical protein JTY_2912 [Mycobacterium bovis BCG str. Tokyo
172]
Length = 389
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 305 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 364
Query: 80 HPE 82
Sbjct: 365 RDG 367
>gi|330820078|ref|YP_004348940.1| DEAD/H associated domain protein [Burkholderia gladioli BSR3]
gi|327372073|gb|AEA63428.1| DEAD/H associated domain protein [Burkholderia gladioli BSR3]
Length = 1663
Score = 37.1 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
+HP+ + TH R R+ P+ + I G+
Sbjct: 1144 LHPEARPE---PAIAAPKGHDGPWTHEAALVDVLRARLT---GFGPLTVAAIAAPLGLPE 1197
Query: 62 PVVYLVLLELDLAGRLCH 79
P V L L+ G +
Sbjct: 1198 PAVEAALASLEAEGYVMR 1215
>gi|289448561|ref|ZP_06438305.1| smf family protein [Mycobacterium tuberculosis CPHL_A]
gi|289421519|gb|EFD18720.1| smf family protein [Mycobacterium tuberculosis CPHL_A]
Length = 376
Score = 37.1 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 292 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 351
Query: 80 HPE 82
Sbjct: 352 RDG 354
>gi|308375917|ref|ZP_07445533.2| hypothetical protein TMGG_02430 [Mycobacterium tuberculosis
SUMu007]
gi|308344817|gb|EFP33668.1| hypothetical protein TMGG_02430 [Mycobacterium tuberculosis
SUMu007]
Length = 342
Score = 37.1 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 258 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 317
Query: 80 HPE 82
Sbjct: 318 RDG 320
>gi|298246969|ref|ZP_06970774.1| putative transcriptional regulator [Ktedonobacter racemifer DSM
44963]
gi|297549628|gb|EFH83494.1| putative transcriptional regulator [Ktedonobacter racemifer DSM
44963]
Length = 210
Score = 37.1 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ R ++ + L ++++ G+ + L L+ G +
Sbjct: 2 QQTPEDTSFLSSTRGKLVRLLRRSSHTVEELAERLGLTDNAIRAQLTVLERDGLVQQQ-G 60
Query: 83 GKVSLT 88
+ S +
Sbjct: 61 QRRSRS 66
>gi|254365536|ref|ZP_04981581.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151049|gb|EBA43094.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
Length = 389
Score = 37.1 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 305 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 364
Query: 80 HPE 82
Sbjct: 365 RDG 367
>gi|297155547|gb|ADI05259.1| transcriptional regulator, DeoR family protein [Streptomyces
bingchenggensis BCW-1]
Length = 253
Score = 37.1 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 33 QCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + L + + I +I G+ L EL AGRL G V+
Sbjct: 4 ETRHETLLTILGDEGVLPIGEIAKRLGVSEATARRDLTELGRAGRLTRVYGGAVA 58
>gi|158333661|ref|YP_001514833.1| ArsR family transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158303902|gb|ABW25519.1| transcriptional regulator, ArsR family [Acaryochloris marina
MBIC11017]
Length = 120
Score = 37.1 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R++I +L + P+ ++D++ TG+ + L L AG L P G
Sbjct: 29 RLQILSNLRSGPMTVNDLVDATGLGQANLSKHLKVLTQAGLLSRTPSG 76
>gi|90265095|emb|CAH67708.1| H0512B01.3 [Oryza sativa Indica Group]
Length = 1283
Score = 36.7 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 11/91 (12%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPE-----YTQCERVRIKQSLNNVPI---HIDD 52
+V P S + RI + +N P+ +D+
Sbjct: 782 VVTPSASPTPLQETSPATPATPAPSPSVAPTEFVSPPSHDEERIDAAHSNTPVGYRTVDN 841
Query: 53 IIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+I + EL+ A L P
Sbjct: 842 LIGENAPTPGIAQR---ELEEASLLLAGPGK 869
>gi|2147827|pir||I40751 nitrilotriacetate monooxygenase (EC 1.14.13.-) component B
[imported] - Chelatobacter heintzii
Length = 335
Score = 36.7 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 23 INITHYPEYTQCERVR-----------IKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLE 70
I HY E E R I L + P+ D++ ++ V L E
Sbjct: 196 IAKAHYKEDADLEEQRSAAGCTPVGSKILAGLYGSAPLTADELARRMYLDRREVVDSLNE 255
Query: 71 LDLAGRLCHHPEGKVSLT 88
G + G+ +LT
Sbjct: 256 FVADGHVESCDSGRFALT 273
>gi|15610033|ref|NP_217412.1| hypothetical protein Rv2896c [Mycobacterium tuberculosis H37Rv]
gi|2851412|sp|Q10817|Y2896_MYCTU RecName: Full=Uncharacterized protein Rv2896c/MT2964
gi|2529205|emb|CAA98374.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
Length = 389
Score = 36.7 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 305 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 364
Query: 80 HPE 82
Sbjct: 365 RDG 367
>gi|332158547|ref|YP_004423826.1| hypothetical protein PNA2_0906 [Pyrococcus sp. NA2]
gi|331034010|gb|AEC51822.1| hypothetical protein PNA2_0906 [Pyrococcus sp. NA2]
Length = 174
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PEGK 84
L+N P+ + +I TG V + L+ G + P +
Sbjct: 36 LSNEPLSLSEIAEITGYSVSHVSSAMRVLEGVGLVQRIKKPGDR 79
>gi|306798827|ref|ZP_07437129.1| putative DNA protecting protein DprA [Mycobacterium tuberculosis
SUMu006]
gi|308340905|gb|EFP29756.1| putative DNA protecting protein DprA [Mycobacterium tuberculosis
SUMu006]
Length = 385
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 305 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 364
Query: 80 HPE 82
Sbjct: 365 RDG 367
>gi|256375104|ref|YP_003098764.1| restriction modification system DNA specificity domain protein
[Actinosynnema mirum DSM 43827]
gi|255919407|gb|ACU34918.1| restriction modification system DNA specificity domain protein
[Actinosynnema mirum DSM 43827]
Length = 442
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
++ TH P E+ RI L HID +I V L E +AG
Sbjct: 154 DRLSDTHIPNPPISEQQRIVDFLEAETAHIDRLIE----TQNRVLEKLAERRMAGITQAV 209
Query: 81 PE 82
Sbjct: 210 SG 211
>gi|119387637|ref|YP_918671.1| DeoR family transcriptional regulator [Paracoccus denitrificans
PD1222]
gi|119378212|gb|ABL72975.1| transcriptional regulator, DeoR family [Paracoccus denitrificans
PD1222]
Length = 260
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 33 QCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
Q ER + +++ + + ID I+ G+ V L+E++ +G L G V
Sbjct: 3 QEERHQKIRAMLASFGQVSIDRIVESFGVSRQTVRRDLIEMEQSGILRRVRGGAV 57
>gi|257791160|ref|YP_003181766.1| DNA protecting protein DprA [Eggerthella lenta DSM 2243]
gi|325832903|ref|ZP_08165576.1| DNA protecting protein DprA [Eggerthella sp. HGA1]
gi|257475057|gb|ACV55377.1| DNA protecting protein DprA [Eggerthella lenta DSM 2243]
gi|325485768|gb|EGC88232.1| DNA protecting protein DprA [Eggerthella sp. HGA1]
Length = 305
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDI----IHHTGIEAPV--VYLVL 68
++ T P + + +L P+ ++ + G E + L
Sbjct: 225 LKQETVPSVERTGAPRADEPS-NPVADALRAEPLSMEQLYAIAASSCGGEDARSWLMERL 283
Query: 69 LELDLAGRLCHHPEGK 84
+E +LAG + HP+G+
Sbjct: 284 VEAELAGTVARHPDGR 299
>gi|54024435|ref|YP_118677.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54015943|dbj|BAD57313.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 294
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 25 ITHYPEYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
P V I L P+ + I GI VL ELDLAG P+
Sbjct: 8 AARSPSPPTRRVVEILTLLAGAAEPLPVAAIAERLGIARATATAVLAELDLAGWAVRVPD 67
Query: 83 GKVSL 87
L
Sbjct: 68 RGYRL 72
>gi|15842439|ref|NP_337476.1| hypothetical protein MT2964 [Mycobacterium tuberculosis CDC1551]
gi|148662740|ref|YP_001284263.1| hypothetical protein MRA_2921 [Mycobacterium tuberculosis H37Ra]
gi|148824085|ref|YP_001288839.1| hypothetical protein TBFG_12910 [Mycobacterium tuberculosis F11]
gi|167969525|ref|ZP_02551802.1| hypothetical protein MtubH3_16471 [Mycobacterium tuberculosis
H37Ra]
gi|215404870|ref|ZP_03417051.1| hypothetical protein Mtub0_14508 [Mycobacterium tuberculosis
02_1987]
gi|215412739|ref|ZP_03421451.1| hypothetical protein Mtub9_15285 [Mycobacterium tuberculosis
94_M4241A]
gi|215428337|ref|ZP_03426256.1| hypothetical protein MtubT9_18873 [Mycobacterium tuberculosis T92]
gi|215431844|ref|ZP_03429763.1| hypothetical protein MtubE_14486 [Mycobacterium tuberculosis
EAS054]
gi|215447158|ref|ZP_03433910.1| hypothetical protein MtubT_14922 [Mycobacterium tuberculosis T85]
gi|219558920|ref|ZP_03537996.1| hypothetical protein MtubT1_17077 [Mycobacterium tuberculosis T17]
gi|253798016|ref|YP_003031017.1| hypothetical protein TBMG_01076 [Mycobacterium tuberculosis KZN
1435]
gi|254232989|ref|ZP_04926316.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254551968|ref|ZP_05142415.1| hypothetical protein Mtube_16152 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260206214|ref|ZP_05773705.1| hypothetical protein MtubK8_18150 [Mycobacterium tuberculosis K85]
gi|289553315|ref|ZP_06442525.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289571085|ref|ZP_06451312.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289575601|ref|ZP_06455828.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289746695|ref|ZP_06506073.1| smf family protein [Mycobacterium tuberculosis 02_1987]
gi|289751561|ref|ZP_06510939.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289755008|ref|ZP_06514386.1| smf family protein [Mycobacterium tuberculosis EAS054]
gi|289759016|ref|ZP_06518394.1| smf family protein [Mycobacterium tuberculosis T85]
gi|294994008|ref|ZP_06799699.1| hypothetical protein Mtub2_05718 [Mycobacterium tuberculosis 210]
gi|297635514|ref|ZP_06953294.1| hypothetical protein MtubK4_15392 [Mycobacterium tuberculosis KZN
4207]
gi|297732513|ref|ZP_06961631.1| hypothetical protein MtubKR_15557 [Mycobacterium tuberculosis KZN
R506]
gi|298526365|ref|ZP_07013774.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306777184|ref|ZP_07415521.1| hypothetical protein TMAG_01097 [Mycobacterium tuberculosis
SUMu001]
gi|306781091|ref|ZP_07419428.1| hypothetical protein TMBG_03040 [Mycobacterium tuberculosis
SUMu002]
gi|306785731|ref|ZP_07424053.1| hypothetical protein TMCG_02146 [Mycobacterium tuberculosis
SUMu003]
gi|306789770|ref|ZP_07428092.1| hypothetical protein TMDG_00088 [Mycobacterium tuberculosis
SUMu004]
gi|306794584|ref|ZP_07432886.1| hypothetical protein TMEG_02163 [Mycobacterium tuberculosis
SUMu005]
gi|306804673|ref|ZP_07441341.1| hypothetical protein TMHG_02101 [Mycobacterium tuberculosis
SUMu008]
gi|306968964|ref|ZP_07481625.1| hypothetical protein TMIG_02398 [Mycobacterium tuberculosis
SUMu009]
gi|306973301|ref|ZP_07485962.1| hypothetical protein TMJG_01888 [Mycobacterium tuberculosis
SUMu010]
gi|307081009|ref|ZP_07490179.1| hypothetical protein TMKG_03330 [Mycobacterium tuberculosis
SUMu011]
gi|307085608|ref|ZP_07494721.1| hypothetical protein TMLG_01388 [Mycobacterium tuberculosis
SUMu012]
gi|313659845|ref|ZP_07816725.1| hypothetical protein MtubKV_15557 [Mycobacterium tuberculosis KZN
V2475]
gi|13882742|gb|AAK47290.1| smf family protein [Mycobacterium tuberculosis CDC1551]
gi|124602048|gb|EAY61058.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|148506892|gb|ABQ74701.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
gi|148722612|gb|ABR07237.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|253319519|gb|ACT24122.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289437947|gb|EFD20440.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289540032|gb|EFD44610.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289544839|gb|EFD48487.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289687223|gb|EFD54711.1| smf family protein [Mycobacterium tuberculosis 02_1987]
gi|289692148|gb|EFD59577.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289695595|gb|EFD63024.1| smf family protein [Mycobacterium tuberculosis EAS054]
gi|289714580|gb|EFD78592.1| smf family protein [Mycobacterium tuberculosis T85]
gi|298496159|gb|EFI31453.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308214466|gb|EFO73865.1| hypothetical protein TMAG_01097 [Mycobacterium tuberculosis
SUMu001]
gi|308326077|gb|EFP14928.1| hypothetical protein TMBG_03040 [Mycobacterium tuberculosis
SUMu002]
gi|308329641|gb|EFP18492.1| hypothetical protein TMCG_02146 [Mycobacterium tuberculosis
SUMu003]
gi|308333780|gb|EFP22631.1| hypothetical protein TMDG_00088 [Mycobacterium tuberculosis
SUMu004]
gi|308337174|gb|EFP26025.1| hypothetical protein TMEG_02163 [Mycobacterium tuberculosis
SUMu005]
gi|308348765|gb|EFP37616.1| hypothetical protein TMHG_02101 [Mycobacterium tuberculosis
SUMu008]
gi|308353466|gb|EFP42317.1| hypothetical protein TMIG_02398 [Mycobacterium tuberculosis
SUMu009]
gi|308357331|gb|EFP46182.1| hypothetical protein TMJG_01888 [Mycobacterium tuberculosis
SUMu010]
gi|308361215|gb|EFP50066.1| hypothetical protein TMKG_03330 [Mycobacterium tuberculosis
SUMu011]
gi|308364835|gb|EFP53686.1| hypothetical protein TMLG_01388 [Mycobacterium tuberculosis
SUMu012]
gi|323718506|gb|EGB27677.1| hypothetical protein TMMG_03769 [Mycobacterium tuberculosis
CDC1551A]
gi|326904510|gb|EGE51443.1| smf family protein [Mycobacterium tuberculosis W-148]
gi|328457790|gb|AEB03213.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 389
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 305 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 364
Query: 80 HPE 82
Sbjct: 365 RDG 367
>gi|302148781|pdb|3M7G|A Chain A, Structure Of Topoisomerase Domain Of Topoisomerase V
Protein
Length = 269
Score = 36.7 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVV 64
+ RI + L P D+I G+ V
Sbjct: 180 PIDEKEERILEILRENPWTPHDEIARRLGLSVSEV 214
>gi|302557620|ref|ZP_07309962.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302475238|gb|EFL38331.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length = 119
Score = 36.7 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T Q E RI L P+ + ++ + VV ++L +L AGR+
Sbjct: 35 TAADPQPEAAARPQPEHARIL-RLCAEPVAVAELAARLDLPMSVVVIMLCDLLEAGRITI 93
Query: 80 HP 81
HP
Sbjct: 94 HP 95
>gi|300790978|ref|YP_003771269.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299800492|gb|ADJ50867.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 160
Score = 36.7 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 32 TQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL--CHHP 81
++ L P D+ +G+ V ++ L+ G + HP
Sbjct: 36 LSAVESKVLDYLARFGPQTPKDLAQLSGLAPASVTAMIDRLERKGIVNRERHP 88
>gi|260913484|ref|ZP_05919962.1| DNA protecting protein DprA [Pasteurella dagmatis ATCC 43325]
gi|260632424|gb|EEX50597.1| DNA protecting protein DprA [Pasteurella dagmatis ATCC 43325]
Length = 377
Score = 36.7 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
+ F+ + K + PEY + + P+ +DD+ +
Sbjct: 304 DIFTRSTPEPTVKTLPPLVQPEYPD-----LFAKIGYTPVSLDDLSEKLKLSVDT 353
>gi|169351508|ref|ZP_02868446.1| hypothetical protein CLOSPI_02288 [Clostridium spiroforme DSM
1552]
gi|169291730|gb|EDS73863.1| hypothetical protein CLOSPI_02288 [Clostridium spiroforme DSM
1552]
Length = 258
Score = 36.7 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 38 RIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS-------LTM 89
RI L + + ++ + + L+EL+ G + G V+ L+
Sbjct: 9 RILNLLKEQTFVTVKQLMEEFDVSRSSIMRDLIELENLGLIKRERGGAVAKDVANLTLSS 68
Query: 90 HLPSP 94
+P
Sbjct: 69 FNEAP 73
>gi|73538786|ref|YP_299153.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134]
gi|72122123|gb|AAZ64309.1| transcriptional regulator, IclR family [Ralstonia eutropha
JMP134]
Length = 248
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 42 SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
L + + + D+ +G+ + +L L+ A + P+G+ SL
Sbjct: 34 RLGDTSLGLADLAQRSGLYKSTLLRLLASLEHAALVQRRPDGRYSL 79
>gi|148822882|ref|YP_001287636.1| transcriptional regulator [Mycobacterium tuberculosis F11]
gi|218753381|ref|ZP_03532177.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
gi|253799287|ref|YP_003032288.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|254550682|ref|ZP_05141129.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289554552|ref|ZP_06443762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289761829|ref|ZP_06521207.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
1503]
gi|297634225|ref|ZP_06952005.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
gi|297731212|ref|ZP_06960330.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
gi|313658544|ref|ZP_07815424.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
gi|148721409|gb|ABR06034.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis F11]
gi|253320790|gb|ACT25393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289439184|gb|EFD21677.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289709335|gb|EFD73351.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
1503]
gi|328459038|gb|AEB04461.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
Length = 218
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC-HHPEGKVSLTMHL 91
R+ + L +D + +G+ LL+L AG + +V +
Sbjct: 21 SGHRLELLDLLVQGERSVDALARASGLTFANASQHLLQLRRAGLVTSRRDGKRVIYALSD 80
Query: 92 PS 93
P
Sbjct: 81 PQ 82
>gi|226944367|ref|YP_002799440.1| ferrous iron transport protein, feoC-like protein [Azotobacter
vinelandii DJ]
gi|226719294|gb|ACO78465.1| ferrous iron transport protein, feoC-like protein [Azotobacter
vinelandii DJ]
Length = 75
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
D+ +G V +L L+ GR+ P G
Sbjct: 20 DLATASGSTPEAVEAMLATLERKGRVRRLPAG 51
>gi|311109269|ref|YP_003982122.1| DNA protecting protein DprA [Achromobacter xylosoxidans A8]
gi|310763958|gb|ADP19407.1| DNA protecting protein DprA [Achromobacter xylosoxidans A8]
Length = 370
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
T E T + + +L P+H+D I+ G++ + LLEL+L GR+
Sbjct: 301 PTPAARAQPATEETLPDH-PVLDALGYDPLHLDAILARNGMDTAELQAQLLELELQGRVV 359
Query: 79 HHPEGKVSL 87
+G+
Sbjct: 360 RLDDGRYQR 368
>gi|327395625|dbj|BAK13047.1| uxu operon transcriptional regulator UxuR [Pantoea ananatis
AJ13355]
Length = 227
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
++ G+ V L+ L++ G + H V + LP P
Sbjct: 39 ELARQLGVSRSSVREALIALEMTGYVSIHTGTGVFVAQTLPQP 81
>gi|312196655|ref|YP_004016716.1| MarR family transcriptional regulator [Frankia sp. EuI1c]
gi|311227991|gb|ADP80846.1| transcriptional regulator, MarR family [Frankia sp. EuI1c]
Length = 165
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 38 RIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
R+ +L P D+ TGI+ V L EL+ G + P
Sbjct: 51 RLLAALEQWGPASQADLGRDTGIDRSDVTGALTELEARGLVERRP 95
>gi|329938088|ref|ZP_08287539.1| hypothetical protein SGM_3031 [Streptomyces griseoaurantiacus M045]
gi|329302577|gb|EGG46467.1| hypothetical protein SGM_3031 [Streptomyces griseoaurantiacus M045]
Length = 486
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
E + + + L P+ +D + +G+ V L L AGR+
Sbjct: 302 EALASEESAEDAELVSVLLAWDPVVDLDRLAEQSGLTPARVRAALTRLGTAGRI 355
>gi|284046884|ref|YP_003397224.1| DeoR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283951105|gb|ADB53849.1| transcriptional regulator, DeoR family [Conexibacter woesei DSM
14684]
Length = 248
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R +I ++ + H+ D+ G+ V L L+ G+L G ++ T P
Sbjct: 7 RQKILHAVRSGTAHVSDLAESFGVSEMTVRRDLRALERDGKLERVHGGAINATDERP 63
>gi|116754178|ref|YP_843296.1| hypothetical protein Mthe_0868 [Methanosaeta thermophila PT]
gi|116665629|gb|ABK14656.1| conserved hypothetical protein [Methanosaeta thermophila PT]
Length = 192
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PE 82
L+ P+ +DD++ TG V + L+ G P
Sbjct: 62 LSETPLSLDDLVEITGYSKSTVSTNMSILEGIGVAKRVVTPG 103
>gi|300313961|ref|YP_003778053.1| SMF protein involved in DNA uptake protein [Herbaspirillum
seropedicae SmR1]
gi|300076746|gb|ADJ66145.1| SMF protein involved in DNA uptake protein [Herbaspirillum
seropedicae SmR1]
Length = 378
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 12 SSQSDTNHTKNINITHYPEY-----TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
D ++ +P + Q++ + P+ ID + G+EA V+
Sbjct: 296 QDMLDELPSRQAVRVAHPSPQSQVDDDAMTSLVMQAMAHDPVDIDTLAARCGLEAAVLAG 355
Query: 67 VLLELDLAGRLCHHPEGKVSL 87
+LL L+LAGR+ P
Sbjct: 356 LLLTLELAGRIELLPGALYRR 376
>gi|291619297|ref|YP_003522039.1| UxuR [Pantoea ananatis LMG 20103]
gi|291154327|gb|ADD78911.1| UxuR [Pantoea ananatis LMG 20103]
Length = 227
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
++ G+ V L+ L++ G + H V + LP P
Sbjct: 39 ELARQLGVSRSSVREALIALEMTGYVSIHTGTGVFVAQTLPQP 81
>gi|19551357|ref|NP_599359.1| DeoR family sugar metabolism transcriptional regulator
[Corynebacterium glutamicum ATCC 13032]
gi|62389001|ref|YP_224403.1| DeoR family regulatory protein [Corynebacterium glutamicum ATCC
13032]
gi|21322870|dbj|BAB97499.1| Transcriptional regulators of sugar metabolism [Corynebacterium
glutamicum ATCC 13032]
gi|41324334|emb|CAF18674.1| Bacterial regulatory proteins, deoR family [Corynebacterium
glutamicum ATCC 13032]
Length = 260
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL-TMHLPSP 94
ID + TG+ A ++ L+EL+ AG L G + P P
Sbjct: 17 PGITRIDALTELTGVSAVTIHRDLVELEQAGFLARTHGGAKRVPKRGTPQP 67
>gi|318042637|ref|ZP_07974593.1| DNA uptake Rossmann fold nucleotide-binding protein [Synechococcus
sp. CB0101]
Length = 415
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQC--ERVRIKQSLNNVPIHIDDIIHHTGIEA 61
P + + ++ + + +R + +D + +
Sbjct: 329 PLLNPSDLTTSLGVGPLRPPRSSTAGPAAAPLLQREAALLAALGAGASLDQLCDRLRLAP 388
Query: 62 PVVYLVLLELDLAGRLCHHPE 82
V+ LL L+LAG L P
Sbjct: 389 GVISERLLRLELAGVLRSEPG 409
>gi|218245511|ref|YP_002370882.1| DNA protecting protein DprA [Cyanothece sp. PCC 8801]
gi|218165989|gb|ACK64726.1| DNA protecting protein DprA [Cyanothece sp. PCC 8801]
Length = 375
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ I E ++I Q++ D I+ TG+ V LL+L+L G + P
Sbjct: 309 DAPIAKPLPNLAPELLKIFQAIKTEETSFDVIVQTTGLSPGEVSGGLLQLELEGLVNQLP 368
Query: 82 EGKVSL 87
+
Sbjct: 369 GMRYQR 374
>gi|218897789|ref|YP_002446200.1| transcriptional regulator, DeoR family [Bacillus cereus G9842]
gi|218542263|gb|ACK94657.1| transcriptional regulator, DeoR family [Bacillus cereus G9842]
Length = 261
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + L
Sbjct: 7 REKILELLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKEGLLKRTHGGAIELA 60
>gi|226228067|ref|YP_002762173.1| ArsR family transcriptional regulator [Gemmatimonas aurantiaca
T-27]
gi|226091258|dbj|BAH39703.1| ArsR family transcriptional regulator [Gemmatimonas aurantiaca
T-27]
Length = 108
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R+ + Q L P+ +++++ TG+ V L +L G + +G
Sbjct: 21 DRARLSLLQELRGGPMTVNELVEATGMGQANVSRHLAQLFANGLVARERDGVFVR 75
>gi|330892129|gb|EGH24790.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 246
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 34 CERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ L + + + +++ T + + +++ L+ G + +G+ L
Sbjct: 14 ASADRVLTVLTAFQVGDTALSLVELVQRTDLIKSTIMRLMVSLETYGLVTRLADGRYMLA 73
Query: 89 MH 90
Sbjct: 74 SE 75
>gi|157959863|ref|YP_001499897.1| DNA protecting protein DprA [Shewanella pealeana ATCC 700345]
gi|157844863|gb|ABV85362.1| DNA protecting protein DprA [Shewanella pealeana ATCC 700345]
Length = 339
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ IDD++ H+G +V LLEL+L G + P G + L
Sbjct: 288 LLASVGYETTTIDDVVEHSGKTIELVLEQLLELELQGWISAVPGGYIRL 336
>gi|90265100|emb|CAH67713.1| H0512B01.8 [Oryza sativa Indica Group]
Length = 1454
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPE-----YTQCERVRIKQSLNNVPI---HIDD 52
+V P S + RI + +N P+ +D+
Sbjct: 851 VVTPSASPTPLQETSPATPATPAPSPSVAPTEFVSPPSHDEERIDAAHSNTPVRYRTVDN 910
Query: 53 IIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+I AP + EL+ A L P
Sbjct: 911 LIGE-NAPAPGIAQR--ELEEASLLLAGPG 937
>gi|323127901|gb|ADX25198.1| Lactose phosphotransferase system repressor [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 256
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 36 RVRIKQSLNN----VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
R R+ L I ++DII + V L EL+ AG+L G S+TM
Sbjct: 4 RERLLTILEQVNERGIITVNDIIETLNVSDMTVRRDLDELEKAGKLIRIHGGAQSITM 61
>gi|322412478|gb|EFY03386.1| Lactose phosphotransferase system repressor [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 256
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 36 RVRIKQSLNN----VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
R R+ L I ++DII + V L EL+ AG+L G S+TM
Sbjct: 4 RERLLTILEQVNERGIITVNDIIETLNVSDMTVRRDLDELEKAGKLIRIHGGAQSITM 61
>gi|251783159|ref|YP_002997464.1| lactose phosphotransferase system repressor [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242391791|dbj|BAH82250.1| lactose phosphotransferase system repressor [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 256
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 36 RVRIKQSLNN----VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
R R+ L I ++DII + V L EL+ AG+L G S+TM
Sbjct: 4 RERLLTILEQVNERGIITVNDIIETLNVSDMTVRRDLDELEKAGKLIRIHGGAQSITM 61
>gi|302148776|pdb|3M6K|A Chain A, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
gi|302148777|pdb|3M6K|B Chain B, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
gi|302148778|pdb|3M6Z|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
gi|302148779|pdb|3M6Z|B Chain B, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
gi|302148780|pdb|3M7D|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Dioxane
Length = 380
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVV 64
+ RI + L P D+I G+ V
Sbjct: 180 PIDEKEERILEILRENPWTPHDEIARRLGLSVSEV 214
>gi|227487980|ref|ZP_03918296.1| ArsR family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227542620|ref|ZP_03972669.1| ArsR family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227092071|gb|EEI27383.1| ArsR family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227181818|gb|EEI62790.1| ArsR family transcriptional regulator [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 100
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 6/55 (10%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 33 QCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
R+ + ++ + + ++ TG+ L ++ G + +G+
Sbjct: 19 DPTRLALLAAIHYAGQNTLTVSELAEETGLRVATASAALRAMENNGTVKSQRDGR 73
>gi|15608812|ref|NP_216190.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841129|ref|NP_336166.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|31792860|ref|NP_855353.1| transcriptional regulatory protein [Mycobacterium bovis
AF2122/97]
gi|121637581|ref|YP_977804.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148661470|ref|YP_001282993.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra]
gi|167969210|ref|ZP_02551487.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|215404024|ref|ZP_03416205.1| transcription regulator ArsR [Mycobacterium tuberculosis 02_1987]
gi|215411321|ref|ZP_03420129.1| transcription regulator ArsR [Mycobacterium tuberculosis
94_M4241A]
gi|215426996|ref|ZP_03424915.1| transcription regulator ArsR [Mycobacterium tuberculosis T92]
gi|215430565|ref|ZP_03428484.1| transcription regulator ArsR [Mycobacterium tuberculosis EAS054]
gi|215445860|ref|ZP_03432612.1| transcription regulator ArsR [Mycobacterium tuberculosis T85]
gi|219557594|ref|ZP_03536670.1| transcription regulator ArsR [Mycobacterium tuberculosis T17]
gi|224990056|ref|YP_002644743.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|254231869|ref|ZP_04925196.1| hypothetical protein TBCG_01626 [Mycobacterium tuberculosis C]
gi|254364516|ref|ZP_04980562.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|260186623|ref|ZP_05764097.1| putative transcriptional regulatory protein [Mycobacterium
tuberculosis CPHL_A]
gi|260200737|ref|ZP_05768228.1| putative transcriptional regulatory protein [Mycobacterium
tuberculosis T46]
gi|260204942|ref|ZP_05772433.1| putative transcriptional regulatory protein [Mycobacterium
tuberculosis K85]
gi|289443131|ref|ZP_06432875.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289447286|ref|ZP_06437030.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289569721|ref|ZP_06449948.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289574342|ref|ZP_06454569.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289745889|ref|ZP_06505267.1| transcriptional regulatory protein [Mycobacterium tuberculosis
02_1987]
gi|289750230|ref|ZP_06509608.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289753765|ref|ZP_06513143.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289757785|ref|ZP_06517163.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|294996623|ref|ZP_06802314.1| putative transcriptional regulatory protein [Mycobacterium
tuberculosis 210]
gi|298525173|ref|ZP_07012582.1| transcriptional regulatory protein [Mycobacterium tuberculosis
94_M4241A]
gi|306775860|ref|ZP_07414197.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|306779676|ref|ZP_07418013.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|306784409|ref|ZP_07422731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|306788776|ref|ZP_07427098.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|306793111|ref|ZP_07431413.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|306797491|ref|ZP_07435793.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|306803372|ref|ZP_07440040.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
gi|306807954|ref|ZP_07444622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
gi|306967771|ref|ZP_07480432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
gi|306971967|ref|ZP_07484628.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
gi|307079681|ref|ZP_07488851.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
gi|307084256|ref|ZP_07493369.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|2916972|emb|CAA17604.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
tuberculosis H37Rv]
gi|13881347|gb|AAK45980.1| transcriptional regulator, ArsR family [Mycobacterium
tuberculosis CDC1551]
gi|31618450|emb|CAD96368.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121493228|emb|CAL71699.1| Probable transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124600928|gb|EAY59938.1| hypothetical protein TBCG_01626 [Mycobacterium tuberculosis C]
gi|134150030|gb|EBA42075.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|148505622|gb|ABQ73431.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|224773169|dbj|BAH25975.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|289416050|gb|EFD13290.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289420244|gb|EFD17445.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289538773|gb|EFD43351.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289543475|gb|EFD47123.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289686417|gb|EFD53905.1| transcriptional regulatory protein [Mycobacterium tuberculosis
02_1987]
gi|289690817|gb|EFD58246.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289694352|gb|EFD61781.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289713349|gb|EFD77361.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|298494967|gb|EFI30261.1| transcriptional regulatory protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215613|gb|EFO75012.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|308327329|gb|EFP16180.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|308330771|gb|EFP19622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|308334594|gb|EFP23445.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308338381|gb|EFP27232.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308342104|gb|EFP30955.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|308345575|gb|EFP34426.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
gi|308349893|gb|EFP38744.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
gi|308354514|gb|EFP43365.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
gi|308358489|gb|EFP47340.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
gi|308362430|gb|EFP51281.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
gi|308366113|gb|EFP54964.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|323719763|gb|EGB28877.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|326903288|gb|EGE50221.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
Length = 218
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC-HHPEGKVSLTMHL 91
R+ + L +D + +G+ LL+L AG + +V +
Sbjct: 21 SGHRLELLDLLVQGERSVDALARASGLTFANASQHLLQLRRAGLVTSRRDGKRVIYALSD 80
Query: 92 PS 93
P
Sbjct: 81 PQ 82
>gi|257058549|ref|YP_003136437.1| DNA protecting protein DprA [Cyanothece sp. PCC 8802]
gi|256588715|gb|ACU99601.1| DNA protecting protein DprA [Cyanothece sp. PCC 8802]
Length = 375
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ I E ++I Q++ D I+ TG+ V LL+L+L G + P
Sbjct: 309 DAPIAKPLPNLAPELLKIFQAIKTEETSFDVIVQTTGLSPGEVSGGLLQLELEGLVNQLP 368
Query: 82 EGKVSL 87
+
Sbjct: 369 GMRYQR 374
>gi|255993974|ref|ZP_05427109.1| DNA protecting protein DprA [Eubacterium saphenum ATCC 49989]
gi|255993642|gb|EEU03731.1| DNA protecting protein DprA [Eubacterium saphenum ATCC 49989]
Length = 286
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + E +I + + + + I T V V+ E+++ G +
Sbjct: 220 DNEVVIDLESLSEVERKIYELVKREGEMSFEKIARLTKTGVSKVMSVITEMEIKGLITTS 279
Query: 81 PE 82
Sbjct: 280 LG 281
>gi|330989738|gb|EGH87841.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 246
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 34 CERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ L + + + +++ T + + +++ L+ G + +G+ L
Sbjct: 14 ASADRVLTVLTAFQVGDTALSLVELVQRTDLIKSTIMRLMVSLETYGLVTRLADGRYMLA 73
Query: 89 MH 90
Sbjct: 74 SE 75
>gi|254388331|ref|ZP_05003566.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
gi|294814322|ref|ZP_06772965.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
gi|197702053|gb|EDY47865.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
gi|294326921|gb|EFG08564.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
Length = 331
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R + L + P ++ G+ A V L L AG + H G+V L
Sbjct: 267 RALLLAELTH-PASTTELARRLGLSAGGVSQHLTALRAAGLVSAHRTGRVVL 317
>gi|111221778|ref|YP_712572.1| putative ATP/GTP-binding protein [Frankia alni ACN14a]
gi|111149310|emb|CAJ60996.1| putative ATP/GTP-binding protein [Frankia alni ACN14a]
Length = 958
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ L PI +D +++ + A ++ L +L G +
Sbjct: 533 LFACLGGDPIPVDVLVNAEVLTASPLFGALTATELWGLVRALAG 576
>gi|228921438|ref|ZP_04084761.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838211|gb|EEM83529.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 261
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|228959001|ref|ZP_04120702.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800662|gb|EEM47578.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 261
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|229190865|ref|ZP_04317856.1| Transcriptional regulator, DeoR [Bacillus cereus ATCC 10876]
gi|228592533|gb|EEK50361.1| Transcriptional regulator, DeoR [Bacillus cereus ATCC 10876]
Length = 254
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|218233260|ref|YP_002367484.1| transcriptional regulator, DeoR family [Bacillus cereus B4264]
gi|218161217|gb|ACK61209.1| transcriptional regulator, DeoR family [Bacillus cereus B4264]
Length = 261
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|75763851|ref|ZP_00743499.1| Transcriptional regulator, DeoR family [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228901304|ref|ZP_04065499.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 4222]
gi|228965707|ref|ZP_04126787.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
sotto str. T04001]
gi|74488658|gb|EAO52226.1| Transcriptional regulator, DeoR family [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228793966|gb|EEM41489.1| Transcriptional regulator, DeoR [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228858333|gb|EEN02798.1| Transcriptional regulator, DeoR [Bacillus thuringiensis IBL 4222]
Length = 261
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|320532033|ref|ZP_08032923.1| putative DNA protecting protein DprA [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135746|gb|EFW27804.1| putative DNA protecting protein DprA [Actinomyces sp. oral taxon
171 str. F0337]
Length = 445
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 34 CERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + ++ + I+ +G+ L L+L G++ G
Sbjct: 390 PDASLVLDAMPARAAASTESIVRSSGLSPKETRSALGILELEGKVERTATG 440
>gi|229046465|ref|ZP_04192120.1| Transcriptional regulator, DeoR [Bacillus cereus AH676]
gi|229110216|ref|ZP_04239790.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-15]
gi|229145344|ref|ZP_04273733.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST24]
gi|296503309|ref|YP_003665009.1| DeoR family transcriptional regulator [Bacillus thuringiensis
BMB171]
gi|228638183|gb|EEK94624.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-ST24]
gi|228673202|gb|EEL28472.1| Transcriptional regulator, DeoR [Bacillus cereus Rock1-15]
gi|228724827|gb|EEL76129.1| Transcriptional regulator, DeoR [Bacillus cereus AH676]
gi|296324361|gb|ADH07289.1| DeoR family transcriptional regulator [Bacillus thuringiensis
BMB171]
Length = 261
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN I D+ + + L ++ G L G + LT
Sbjct: 7 REKILERLNTDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|308374723|ref|ZP_07667857.1| hypothetical protein TMFG_00093 [Mycobacterium tuberculosis
SUMu006]
gi|308340941|gb|EFP29792.1| hypothetical protein TMFG_00093 [Mycobacterium tuberculosis
SUMu006]
Length = 134
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ ++L ID+I +G+ V L L++AG
Sbjct: 50 DEPRPGAALDVLSEAERQVYEALPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 109
Query: 80 HPE 82
Sbjct: 110 RDG 112
>gi|282862958|ref|ZP_06272018.1| putative transcriptional regulator, ArsR family [Streptomyces sp.
ACTE]
gi|282561940|gb|EFB67482.1| putative transcriptional regulator, ArsR family [Streptomyces sp.
ACTE]
Length = 321
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ N R R+ L P ++ TG+ V L L AG +
Sbjct: 240 DPRPNTRSAALAAVLGRSRSRLLAEL-ETPASTTELARRTGLSRAGVSQCLTALRDAGLV 298
Query: 78 CHHPEGKVSL 87
H G+ L
Sbjct: 299 SAHRAGRSVL 308
>gi|257487627|ref|ZP_05641668.1| putative IclR-family regulatory protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331013109|gb|EGH93165.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 246
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 34 CERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ L + + + +++ T + + +++ L+ G + +G+ L
Sbjct: 14 ASADRVLTVLTAFQVGDTALSLVELVQRTDLIKSTIMRLMVSLETYGLVTRLADGRYMLA 73
Query: 89 MH 90
Sbjct: 74 SE 75
>gi|167751883|ref|ZP_02424010.1| hypothetical protein ALIPUT_00125 [Alistipes putredinis DSM 17216]
gi|167660124|gb|EDS04254.1| hypothetical protein ALIPUT_00125 [Alistipes putredinis DSM 17216]
Length = 641
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 26/64 (40%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ + + + L N + +I+ + + +L +L G++ P+GK
Sbjct: 577 RAARAPQAEASKKTVLELLRNDALDPREIVAALRSDPAQIAELLRKLSGEGKISILPDGK 636
Query: 85 VSLT 88
V++
Sbjct: 637 VTIN 640
>gi|149200996|ref|ZP_01877971.1| probable glycerol-3-phosphate regulon repressor [Roseovarius sp.
TM1035]
gi|149145329|gb|EDM33355.1| probable glycerol-3-phosphate regulon repressor [Roseovarius sp.
TM1035]
Length = 261
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++D+ + + L EL AG+L G +
Sbjct: 20 VTVEDLAERFDVTVQTIRRDLTELANAGKLERVHGGAI 57
>gi|220908188|ref|YP_002483499.1| RecQ family ATP-dependent DNA helicase [Cyanothece sp. PCC 7425]
gi|219864799|gb|ACL45138.1| ATP-dependent DNA helicase, RecQ family [Cyanothece sp. PCC 7425]
Length = 552
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
P+ ++D+ T + + L L+ G P G+V + P
Sbjct: 379 APVEVEDLKEATDLSEAKINTALSRLEEVGLAETLPTGEVVASEEQP 425
>gi|326436914|gb|EGD82484.1| hypothetical protein PTSG_11971 [Salpingoeca sp. ATCC 50818]
Length = 651
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 21/95 (22%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQS------------------ 42
M+ Q S Q + +H K T P R + +
Sbjct: 1 MLRTQDTPAALSPQQEASHAKPAQDTSSPPPDPANRKNMLRRRASLASQRMQSLEVPFKS 60
Query: 43 ---LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLA 74
L+ D++ + V L EL LA
Sbjct: 61 MEDLDITHKSADELKQWMQKDPTTVAEALRELALA 95
>gi|165977147|ref|YP_001652740.1| Smf protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|165877248|gb|ABY70296.1| Smf protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 384
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
K ++ + +I ++ PI IDD+ T +E + + LL L+L +
Sbjct: 316 PNKVTHLAKKLPELTACQQQIVAHISLEPISIDDLAKATSLEVETLLVELLGLELLSVIK 375
Query: 79 HHPEGKVS 86
G V
Sbjct: 376 QVSGGYVR 383
>gi|16264789|ref|NP_437581.1| putative transcriptional regulator. arsR family protein
[Sinorhizobium meliloti 1021]
gi|307308063|ref|ZP_07587781.1| transcriptional regulator, ArsR family [Sinorhizobium meliloti
BL225C]
gi|307319868|ref|ZP_07599291.1| transcriptional regulator, ArsR family [Sinorhizobium meliloti
AK83]
gi|15140927|emb|CAC49441.1| putative transcriptional regulator [Sinorhizobium meliloti 1021]
gi|306894408|gb|EFN25171.1| transcriptional regulator, ArsR family [Sinorhizobium meliloti
AK83]
gi|306901467|gb|EFN32071.1| transcriptional regulator, ArsR family [Sinorhizobium meliloti
BL225C]
Length = 306
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 33 QCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
R+ I L P+++++I H G+ L L+ AG + H
Sbjct: 22 SATRIEILNLLRLKGPLNVNEIATHMGLPQSTTATNLKSLERAGLIQTH 70
>gi|326442712|ref|ZP_08217446.1| ArsR family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 328
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R + L + P ++ G+ A V L L AG + H G+V L
Sbjct: 264 RALLLAELTH-PASTTELARRLGLSAGGVSQHLTALRAAGLVSAHRTGRVVL 314
>gi|159899800|ref|YP_001546047.1| transcriptional regulator TrmB [Herpetosiphon aurantiacus ATCC
23779]
gi|159892839|gb|ABX05919.1| transcriptional regulator, TrmB [Herpetosiphon aurantiacus ATCC
23779]
Length = 114
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R+++ ++L P+ + I+ T + V L L G + +G+
Sbjct: 21 ADASRLKVLEALCAEPLTVSAIVAATQLSQSNVSNHLSCLHDCGLVARQQQGRF 74
>gi|212224776|ref|YP_002308012.1| Hypothetical transcription regulator [Thermococcus onnurineus
NA1]
gi|212009733|gb|ACJ17115.1| Hypothetical transcription regulator [Thermococcus onnurineus
NA1]
Length = 173
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 43 LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH--PE 82
L P+ + +I TG V L ++ G + P
Sbjct: 36 LAKEPMSLSEIAERTGYSLSHVSTALKSMESLGLVVRIKKPG 77
>gi|190576244|ref|YP_001974089.1| DNA-binding transcriptional regulator AgaR [Stenotrophomonas
maltophilia K279a]
gi|190014166|emb|CAQ47805.1| putative aga operon DeoR family transcriptional repressor
[Stenotrophomonas maltophilia K279a]
Length = 258
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
R +I Q L + + + D++ G+ A + L + G G +L P
Sbjct: 8 RQQILQLLIEHGSVQVADLVERFGVSAVTIRADLTHFESQGLANRTHGGA-TLVRTPPQE 66
Query: 95 Q 95
Q
Sbjct: 67 Q 67
>gi|298293627|ref|YP_003695566.1| ArsR family transcriptional regulator [Starkeya novella DSM 506]
gi|296930138|gb|ADH90947.1| transcriptional regulator, ArsR family [Starkeya novella DSM 506]
Length = 113
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R I L P + D+ TG+ P V L L+ AG + +G+V
Sbjct: 16 ADPTRRSILNRLAEGPARVTDLSEPTGLRLPTVMRHLSVLEEAGLIATSKDGRVR 70
>gi|295395073|ref|ZP_06805282.1| RecQ family ATP-dependent DNA helicase [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972021|gb|EFG47887.1| RecQ family ATP-dependent DNA helicase [Brevibacterium mcbrellneri
ATCC 49030]
Length = 706
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 31 YTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + +L + P + + GI+ + L+L L + G G V
Sbjct: 358 PNEQDATAVLDALGDEPRSVPALEPLVGIKRNRLELLLKVLTVDGAAQRVRGGYVR 413
>gi|2507085|sp|P54990|NTAB_CHEHE RecName: Full=Nitrilotriacetate monooxygenase component B;
Short=NTA monooxygenase component B; Short=NTA-MO B
gi|1119210|gb|AAB47921.1| nmoB [Aminobacter aminovorans]
gi|1488660|gb|AAB05944.1| NTA monooxygenase component B [Aminobacter aminovorans]
Length = 322
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 23 INITHYPEYTQCERVR-----------IKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLE 70
I HY E E R I L + P+ D++ ++ V L E
Sbjct: 196 IAKAHYKEDADLEEQRSAAGCTPVGSKILAGLYGSAPLTADELARRMYLDRREVVDSLNE 255
Query: 71 LDLAGRLCHHPEGKVSLT 88
G + G+ +LT
Sbjct: 256 FVADGHVESCDSGRFALT 273
>gi|261404091|ref|YP_003240332.1| ArsR family transcriptional regulator [Paenibacillus sp.
Y412MC10]
gi|261280554|gb|ACX62525.1| transcriptional regulator, ArsR family [Paenibacillus sp.
Y412MC10]
Length = 310
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
RVRI ++L + P+ + + GI P V + + L+ A +
Sbjct: 25 SDVRVRILEALGDKPMSVGQLAEALGIAQPTVSINVQMLEQAELIVSSQG 74
>gi|88192678|pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
gi|88192679|pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
Length = 519
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVV 64
+ RI + L P D+I G+ V
Sbjct: 180 PIDEKEERILEILRENPWTPHDEIARRLGLSVSEV 214
>gi|227354902|ref|ZP_03839316.1| SMF family Rossmann fold nucleotide-binding protein [Proteus
mirabilis ATCC 29906]
gi|227164984|gb|EEI49823.1| SMF family Rossmann fold nucleotide-binding protein [Proteus
mirabilis ATCC 29906]
Length = 385
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 15 SDTNHTKNINITHYPEYTQCERVR----IKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLL 69
S N ++ N+ E + + I L I ID I + +G+ + +LL
Sbjct: 307 SAANKKESSNMPLEIEKLTPTQQQSINLILPLLGFDKAIPIDIIANKSGLSTSDLAPLLL 366
Query: 70 ELDLAGRLCHHPEGKVSL 87
EL+L ++ G + L
Sbjct: 367 ELELIEKVAIVAGGYIRL 384
>gi|16127407|ref|NP_421971.1| AsnC family transcriptional regulator [Caulobacter crescentus CB15]
gi|13424849|gb|AAK25139.1| transcriptional regulator, AsnC family [Caulobacter crescentus
CB15]
Length = 223
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAP 62
P+ + + + T + E +I + + + + +I G+ +
Sbjct: 35 PRRARVVAALRKIKAPTPSGGRNFLSEQLDAVDAKILDLIQHDAGLSVAEIAERVGLSSS 94
Query: 63 VVYLVLLELDLAGRLCH 79
+ + L+ AG +
Sbjct: 95 PCWRRIKRLEDAGVIQR 111
>gi|220932896|ref|YP_002509804.1| regulatory protein ArsR [Halothermothrix orenii H 168]
gi|219994206|gb|ACL70809.1| regulatory protein ArsR [Halothermothrix orenii H 168]
Length = 310
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH--HPE 82
R++I LNN +++++I + AP V + + +L+ AG + P
Sbjct: 22 ASESRLQILDVLNNQEMNLNEISEKLDMPAPSVTVNIKKLEEAGLIETNYQPG 74
>gi|308271660|emb|CBX28268.1| hypothetical protein N47_G35920 [uncultured Desulfobacterium sp.]
Length = 268
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
++ I+++L+ P+ + ++ TGI V L EL+L G
Sbjct: 210 QKALIQEALSKGPVTVREMADQTGIAIYTVSKRLNELELGGL 251
>gi|332312762|gb|EGJ25857.1| Transcriptional regulator [Listeria monocytogenes str. Scott A]
Length = 267
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 19 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 76
Query: 88 TMHLPSP 94
+H P
Sbjct: 77 KLHNQEP 83
>gi|315283389|ref|ZP_07871595.1| DeoR family transcriptional regulator [Listeria marthii FSL
S4-120]
gi|313612961|gb|EFR86897.1| DeoR family transcriptional regulator [Listeria marthii FSL
S4-120]
Length = 250
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|255025513|ref|ZP_05297499.1| hypothetical protein LmonocytFSL_02788 [Listeria monocytogenes
FSL J2-003]
Length = 243
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|254992015|ref|ZP_05274205.1| regulatory protein DeoR family [Listeria monocytogenes FSL
J2-064]
Length = 250
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|3169685|gb|AAC17921.1| aminopeptidase regulatory protein [Listeria monocytogenes]
Length = 159
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|46908507|ref|YP_014896.1| DeoR family transcriptional regulator [Listeria monocytogenes
serotype 4b str. F2365]
gi|217963565|ref|YP_002349243.1| DeoR family transcriptional regulator [Listeria monocytogenes
HCC23]
gi|226224882|ref|YP_002758989.1| regulatory protein DeoR family [Listeria monocytogenes Clip81459]
gi|254825088|ref|ZP_05230089.1| transcriptional regulator [Listeria monocytogenes FSL J1-194]
gi|254854289|ref|ZP_05243637.1| transcriptional regulator [Listeria monocytogenes FSL R2-503]
gi|254933335|ref|ZP_05266694.1| transcriptional regulator [Listeria monocytogenes HPB2262]
gi|255519752|ref|ZP_05386989.1| regulatory protein DeoR family [Listeria monocytogenes FSL
J1-175]
gi|290893625|ref|ZP_06556607.1| transcriptional regulator [Listeria monocytogenes FSL J2-071]
gi|300763915|ref|ZP_07073911.1| DeoR family transcriptional regulator [Listeria monocytogenes FSL
N1-017]
gi|46881779|gb|AAT05073.1| transcriptional regulator, DeoR family [Listeria monocytogenes
serotype 4b str. F2365]
gi|217332835|gb|ACK38629.1| transcriptional regulator, DeoR family [Listeria monocytogenes
HCC23]
gi|225877344|emb|CAS06058.1| Putative regulatory protein DeoR family [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258607681|gb|EEW20289.1| transcriptional regulator [Listeria monocytogenes FSL R2-503]
gi|290556827|gb|EFD90359.1| transcriptional regulator [Listeria monocytogenes FSL J2-071]
gi|293584896|gb|EFF96928.1| transcriptional regulator [Listeria monocytogenes HPB2262]
gi|293594331|gb|EFG02092.1| transcriptional regulator [Listeria monocytogenes FSL J1-194]
gi|300515256|gb|EFK42307.1| DeoR family transcriptional regulator [Listeria monocytogenes FSL
N1-017]
gi|307571859|emb|CAR85038.1| transcriptional regulator, DeoR family [Listeria monocytogenes
L99]
gi|328465372|gb|EGF36619.1| regulatory protein DeoR family [Listeria monocytogenes 1816]
gi|328471558|gb|EGF42438.1| regulatory protein DeoR family [Listeria monocytogenes 220]
Length = 250
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|47092435|ref|ZP_00230225.1| transcriptional regulator, DeoR family [Listeria monocytogenes
str. 4b H7858]
gi|47019212|gb|EAL09955.1| transcriptional regulator, DeoR family [Listeria monocytogenes
str. 4b H7858]
Length = 250
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|16804375|ref|NP_465860.1| hypothetical protein lmo2337 [Listeria monocytogenes EGD-e]
gi|47096035|ref|ZP_00233637.1| transcriptional regulator, DeoR family [Listeria monocytogenes
str. 1/2a F6854]
gi|224499016|ref|ZP_03667365.1| hypothetical protein LmonF1_04663 [Listeria monocytogenes Finland
1988]
gi|224503533|ref|ZP_03671840.1| hypothetical protein LmonFR_13672 [Listeria monocytogenes FSL
R2-561]
gi|254826838|ref|ZP_05231525.1| transcriptional regulator [Listeria monocytogenes FSL N3-165]
gi|254831238|ref|ZP_05235893.1| hypothetical protein Lmon1_07767 [Listeria monocytogenes 10403S]
gi|254901137|ref|ZP_05261061.1| hypothetical protein LmonJ_15023 [Listeria monocytogenes J0161]
gi|254914013|ref|ZP_05264025.1| transcriptional regulator [Listeria monocytogenes J2818]
gi|254938328|ref|ZP_05270025.1| transcriptional regulator [Listeria monocytogenes F6900]
gi|255029873|ref|ZP_05301824.1| hypothetical protein LmonL_13874 [Listeria monocytogenes LO28]
gi|284802778|ref|YP_003414643.1| hypothetical protein LM5578_2535 [Listeria monocytogenes 08-5578]
gi|284995920|ref|YP_003417688.1| hypothetical protein LM5923_2485 [Listeria monocytogenes 08-5923]
gi|16411825|emb|CAD00415.1| lmo2337 [Listeria monocytogenes EGD-e]
gi|47015632|gb|EAL06563.1| transcriptional regulator, DeoR family [Listeria monocytogenes
str. 1/2a F6854]
gi|258599216|gb|EEW12541.1| transcriptional regulator [Listeria monocytogenes FSL N3-165]
gi|258610940|gb|EEW23548.1| transcriptional regulator [Listeria monocytogenes F6900]
gi|284058340|gb|ADB69281.1| hypothetical protein LM5578_2535 [Listeria monocytogenes 08-5578]
gi|284061387|gb|ADB72326.1| hypothetical protein LM5923_2485 [Listeria monocytogenes 08-5923]
gi|293592031|gb|EFG00366.1| transcriptional regulator [Listeria monocytogenes J2818]
Length = 250
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLATSESTIRRDLIELEEQGLIQRVHGGAKLV 59
Query: 88 TMHLPSP 94
+H P
Sbjct: 60 KLHNQEP 66
>gi|314928575|gb|EFS92406.1| oxidoreductase family, NAD-binding Rossmann fold protein
[Propionibacterium acnes HL044PA1]
gi|314970376|gb|EFT14474.1| oxidoreductase family, NAD-binding Rossmann fold protein
[Propionibacterium acnes HL037PA3]
Length = 818
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGK 84
+ + + D++ TG+ P V +L +L+ +G + P G
Sbjct: 67 LLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWVIRGASDPGGL 115
>gi|75907804|ref|YP_322100.1| ArsR family transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75701529|gb|ABA21205.1| transcriptional regulator, ArsR family [Anabaena variabilis ATCC
29413]
Length = 120
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R++I L + P+++ +I TG+ + L L AG + P+G
Sbjct: 26 ESSRLQILSCLKSGPMNVMEIAEATGLGQANLSKHLKVLTQAGLVSRQPKG 76
>gi|88192676|pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
gi|88192677|pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
Length = 519
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVV 64
+ RI + L P D+I G+ V
Sbjct: 180 PIDEKEERILEILRENPWTPHDEIARRLGLSVSEV 214
>gi|237799126|ref|ZP_04587587.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021981|gb|EGI02038.1| putative IclR family regulatory protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 244
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 25 ITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+ L + +++ ++ TG+ + +++ L+ G +
Sbjct: 5 RPRPAVSGVASADRVLTVLTAFQVGDTALNLVELTERTGLIKSTIMRLMVSLENHGFVTR 64
Query: 80 HPEGKVSLTMH 90
+G+ L
Sbjct: 65 LSDGRYMLASE 75
>gi|209547682|ref|YP_002279599.1| ArsR family transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209533438|gb|ACI53373.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 121
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + +I + P V L L+ AG +
Sbjct: 27 SAPRRKILAYLSASGLTAGEIADRFSMSKPAVSQHLSILETAGLIKR 73
>gi|308051483|ref|YP_003915049.1| DeoR family transcriptional regulator [Ferrimonas balearica DSM
9799]
gi|307633673|gb|ADN77975.1| transcriptional regulator, DeoR family [Ferrimonas balearica DSM
9799]
Length = 257
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R RI L + +D + G + L L+ +G L G +++
Sbjct: 10 RHRIMAMLGEQGEVSVDQLARELGTSEVTIRKDLATLEASGLLLRRYGGAIAM 62
>gi|300870742|ref|YP_003785613.1| DeoR family transcriptional regulator [Brachyspira pilosicoli
95/1000]
gi|300688441|gb|ADK31112.1| transcriptional regulator, DeoR family [Brachyspira pilosicoli
95/1000]
Length = 246
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I ++++I + + L L+ AG++ G +
Sbjct: 20 IKVEELIERLNVSEATIRRDLSFLEKAGKIRRVHGGAI 57
>gi|257784505|ref|YP_003179722.1| SMF family protein [Atopobium parvulum DSM 20469]
gi|257473012|gb|ACV51131.1| SMF family protein [Atopobium parvulum DSM 20469]
Length = 291
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + +L P +++ V L + + G + P+G+
Sbjct: 229 DKKLTPLLSALIASPSRPEELAWRLSENVLTVLNSLTDYEARGMVKRLPDGRY 281
>gi|223041758|ref|ZP_03611951.1| protein smf (DNA-processing chain A) [Actinobacillus minor 202]
gi|223017442|gb|EEF15860.1| protein smf (DNA-processing chain A) [Actinobacillus minor 202]
Length = 382
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 23/67 (34%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
T + RI + PI IDD+ ++ + + LL L+L +
Sbjct: 315 TPPPKNAKALPEMTACQQRIFTQIGLEPIAIDDLAKALTLDVAELLVELLNLELLSVIKS 374
Query: 80 HPEGKVS 86
G V
Sbjct: 375 VNGGYVR 381
>gi|116053741|ref|YP_788176.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|115588962|gb|ABJ14977.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 362
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 319 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 361
>gi|221236216|ref|YP_002518653.1| AsnC family transcriptional regulator [Caulobacter crescentus
NA1000]
gi|220965389|gb|ACL96745.1| transcriptional regulator, AsnC family [Caulobacter crescentus
NA1000]
Length = 234
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAP 62
P+ + + + T + E +I + + + + +I G+ +
Sbjct: 46 PRRARVVAALRKIKAPTPSGGRNFLSEQLDAVDAKILDLIQHDAGLSVAEIAERVGLSSS 105
Query: 63 VVYLVLLELDLAGRLCH 79
+ + L+ AG +
Sbjct: 106 PCWRRIKRLEDAGVIQR 122
>gi|15595219|ref|NP_248711.1| hypothetical protein PA0021 [Pseudomonas aeruginosa PAO1]
gi|9945840|gb|AAG03411.1|AE004441_12 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 362
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 319 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 361
>gi|291619771|ref|YP_003522513.1| YgbI [Pantoea ananatis LMG 20103]
gi|291154801|gb|ADD79385.1| YgbI [Pantoea ananatis LMG 20103]
Length = 271
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ TG + L++LD G + G V+L +PS
Sbjct: 35 VTVEQLVTVTGASPATIRRDLIKLDHEGVVSRTHGG-VTLNRFIPS 79
>gi|169631502|ref|YP_001705151.1| putative transcriptional regulator [Mycobacterium abscessus ATCC
19977]
gi|169243469|emb|CAM64497.1| Putative transcriptional regulator [Mycobacterium abscessus]
Length = 155
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
D+ G+ AP V L +L+ AG + P
Sbjct: 41 YGSTRFDEFAERIGVSAPAVSRALKQLEAAGVIEKVP 77
>gi|292656635|ref|YP_003536532.1| conditioned medium-induced protein 2 [Haloferax volcanii DS2]
gi|17148921|gb|AAL35835.1|AF442114_1 conditioned medium-induced protein 2 [Haloferax volcanii]
gi|291371321|gb|ADE03548.1| conditioned medium-induced protein 2 [Haloferax volcanii DS2]
Length = 217
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI + L++ P ++ +I + G+ V L +L+ AG +
Sbjct: 15 RRRILRLLSHKPCYVTEISEYLGVSPKAVIDHLRKLEDAGLIES 58
>gi|317406412|gb|EFV86628.1| hypothetical protein HMPREF0005_05511 [Achromobacter xylosoxidans
C54]
Length = 145
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 20/63 (31%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R R+ L P + + + P L L+ AG + +G+V
Sbjct: 18 ADTTRRRVLADLEPGPASVGTLARPHAMSLPAFMKHLRVLEDAGLIARAKDGRVVRCTLS 77
Query: 92 PSP 94
P
Sbjct: 78 AGP 80
>gi|149915754|ref|ZP_01904279.1| nicotinic acid mononucleotide adenyltransferase [Roseobacter sp.
AzwK-3b]
gi|149810336|gb|EDM70181.1| nicotinic acid mononucleotide adenyltransferase [Roseobacter sp.
AzwK-3b]
Length = 253
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++D+ + + L EL AG+L G +
Sbjct: 20 VMVEDLAERFDVTVQTIRRDLTELANAGKLERVHGGAI 57
>gi|146281828|ref|YP_001171981.1| ATP-dependent DNA helicase [Pseudomonas stutzeri A1501]
gi|145570033|gb|ABP79139.1| probable ATP-dependent DNA helicase [Pseudomonas stutzeri A1501]
Length = 1437
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 4 PQIEQNFFSSQSDTNHTKN-INITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHT 57
P + S + + + + E + + + P+ + I
Sbjct: 949 PLERLAWLRSIYPQAACEPCLPLPAGYDQLLDEEEALVELIRARLGGFAPLPVPLIARPL 1008
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ A V L L L+ G + G+ S
Sbjct: 1009 ALPASAVALALTRLEAQGYVLR---GRFS 1034
>gi|118588661|ref|ZP_01546069.1| transcriptional regulator, ArsR family protein [Stappia aggregata
IAM 12614]
gi|118438647|gb|EAV45280.1| transcriptional regulator, ArsR family protein [Stappia aggregata
IAM 12614]
Length = 113
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R + L + P + D+ TG++ P V L L+ AG + +G++
Sbjct: 17 DPTRRAMLTRLASGPARVTDLAEPTGLKLPTVMRHLSVLEQAGFITTAKDGRIR 70
>gi|116619868|ref|YP_822024.1| ATP-dependent DNA helicase RecQ [Candidatus Solibacter usitatus
Ellin6076]
gi|116223030|gb|ABJ81739.1| ATP-dependent DNA helicase, RecQ family [Candidatus Solibacter
usitatus Ellin6076]
Length = 496
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
K + P + RI + P+ + I G+ + + L L+ G
Sbjct: 350 KASEGSIDPGQLEELAARI--ATEEGPVDTEKIGEDVGLSQRKLTIALHRLEDTGAAEIL 407
Query: 81 PEGKVSLTMHLPSPQ 95
P G++ ++ + Q
Sbjct: 408 PGGEIRVSEDIEPAQ 422
>gi|300024125|ref|YP_003756736.1| ArsR family transcriptional regulator [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525946|gb|ADJ24415.1| transcriptional regulator, ArsR family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 118
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L + + ++ + P + L L+ AG +
Sbjct: 14 ADPTRRAILARLTHGETSVSELAEPFDMSLPAISKHLKVLERAGLIAR 61
>gi|254426183|ref|ZP_05039900.1| transcriptional regulator, ArsR family protein [Synechococcus sp.
PCC 7335]
gi|196188606|gb|EDX83571.1| transcriptional regulator, ArsR family protein [Synechococcus sp.
PCC 7335]
Length = 134
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYT-----------QCERVRIKQSLNNVPIHIDDIIH 55
+++ Q + N PE + R++I +L P +I +II
Sbjct: 6 KKSARKDQPAKATSANRVAQLSPESLALIANFFKVLSEPSRLQIVCTLKTGPHNITEIIE 65
Query: 56 HTGIEAPVVYLVLLELDLAGRLCHHP 81
TG+ V L L AG + P
Sbjct: 66 QTGLGQANVSKHLKLLSQAGIVSRQP 91
>gi|313835550|gb|EFS73264.1| oxidoreductase family, NAD-binding Rossmann fold protein
[Propionibacterium acnes HL037PA2]
Length = 818
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGK 84
+ + + D++ TG+ P V +L +L+ +G + P G
Sbjct: 67 LLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWVIRGASDPGGL 115
>gi|306841034|ref|ZP_07473758.1| DeoR family transcriptional regulator [Brucella sp. BO2]
gi|306288923|gb|EFM60223.1| DeoR family transcriptional regulator [Brucella sp. BO2]
Length = 274
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 33 QCERVRI-KQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ ER RI ++ P+ I D++ T + + L + GR+ G + +H
Sbjct: 3 ERERHRIILSAVQEKPVITIQDLVELTEASEATLRRDIASLHMQGRIKRVRGG--AEAIH 60
Query: 91 LPS 93
P
Sbjct: 61 PPQ 63
>gi|269956156|ref|YP_003325945.1| putative transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
gi|269304837|gb|ACZ30387.1| putative transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
Length = 248
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
Q T N E + R R+ + ++ P+ D+ G+ + V L +L+
Sbjct: 4 QQATRAVVPANAEPGEESAESTRRRVLGLVASDGPVTAADLAARLGLTSAGVRRHLAQLE 63
Query: 73 LAGRLCHH 80
G + H
Sbjct: 64 EDGTITVH 71
>gi|226315427|ref|YP_002775323.1| transcriptional repressor of the fructose operon [Brevibacillus
brevis NBRC 100599]
gi|226098377|dbj|BAH46819.1| probable transcriptional repressor of the fructose operon
[Brevibacillus brevis NBRC 100599]
Length = 251
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 32 TQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
ER ++ +L + I +++ TG + L EL+ L G L
Sbjct: 2 LTPERHQLIVALVEEKDIVRIHELVEATGASESTIRRDLSELEEQRLLKRVHGGASVLQS 61
Query: 90 HLPSP 94
+ P
Sbjct: 62 KIEEP 66
>gi|326771766|ref|ZP_08231051.1| DNA protecting protein DprA [Actinomyces viscosus C505]
gi|326637899|gb|EGE38800.1| DNA protecting protein DprA [Actinomyces viscosus C505]
Length = 462
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ ++ + I+ G+ L L+L+G++ G
Sbjct: 397 LDPAASLVLDAMPARAAASTESIVRSAGLSPKETTSALGILELSGKVERTASG 449
>gi|297626585|ref|YP_003688348.1| DNA processing / uptake protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922350|emb|CBL56922.1| DNA processing / uptake protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 386
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVL 68
+ + + + E +++++ + I +D + +G A L
Sbjct: 295 LLTPVGEHVELPGVKAVRELDGLDPELAAVREAMPSRGDIDLDSLSVASGRSAAQCAAAL 354
Query: 69 LELDLAGRLCH 79
+ LD+ G +
Sbjct: 355 IRLDMRGLVQQ 365
>gi|254521938|ref|ZP_05133993.1| glucitol operon repressor [Stenotrophomonas sp. SKA14]
gi|219719529|gb|EED38054.1| glucitol operon repressor [Stenotrophomonas sp. SKA14]
Length = 258
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
R +I Q L + + + D++ G+ A + L + G G +L P
Sbjct: 8 RQQILQLLIEHGSVQVADLVERFGVSAVTIRADLTHFESQGLANRTHGGA-TLVRTPPQE 66
Query: 95 Q 95
Q
Sbjct: 67 Q 67
>gi|315501474|ref|YP_004080361.1| transcriptional regulator [Micromonospora sp. L5]
gi|315408093|gb|ADU06210.1| putative transcriptional regulator [Micromonospora sp. L5]
Length = 595
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
++ R I +L + ++ TG+ V LL L
Sbjct: 502 PPRIEEDAEHGGRPRRRSPADR-RQEILDALGAQTLSRAELAEATGLTDQTVRRWLLVLR 560
Query: 73 LAGRLCHHPE 82
G +
Sbjct: 561 REGLVTTTEG 570
>gi|107099014|ref|ZP_01362932.1| hypothetical protein PaerPA_01000022 [Pseudomonas aeruginosa PACS2]
gi|254243133|ref|ZP_04936455.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126196511|gb|EAZ60574.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 362
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 319 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 361
>gi|254237737|ref|ZP_04931060.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126169668|gb|EAZ55179.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 362
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 319 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 361
>gi|229018081|ref|ZP_04174956.1| Transcriptional regulator, DeoR [Bacillus cereus AH1273]
gi|229024262|ref|ZP_04180721.1| Transcriptional regulator, DeoR [Bacillus cereus AH1272]
gi|228737037|gb|EEL87573.1| Transcriptional regulator, DeoR [Bacillus cereus AH1272]
gi|228743172|gb|EEL93297.1| Transcriptional regulator, DeoR [Bacillus cereus AH1273]
Length = 256
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + L I D+ + + L ++ G L G V LT
Sbjct: 7 REKILELLKKDGRVIAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAVELT 60
>gi|17231235|ref|NP_487783.1| transcriptional regulator [Nostoc sp. PCC 7120]
gi|17132877|dbj|BAB75442.1| transcriptional regulator [Nostoc sp. PCC 7120]
Length = 120
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R++I L + P+++ +I TG+ + L L AG + P+G
Sbjct: 26 ESSRLQILSCLKSGPMNVMEIAEATGLGQANLSKHLKVLTQAGLVSRQPKG 76
>gi|295099947|emb|CBK89036.1| Transcriptional regulators of sugar metabolism [Eubacterium
cylindroides T2-87]
Length = 255
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 38 RIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
RI L + I ++I + + L+EL+ G + G
Sbjct: 9 RIMNLLEERSFVTIKELIEDFNVSRSSIVRDLIELENQGLIQRERGG 55
>gi|210634501|ref|ZP_03298128.1| hypothetical protein COLSTE_02050 [Collinsella stercoris DSM 13279]
gi|210158802|gb|EEA89773.1| hypothetical protein COLSTE_02050 [Collinsella stercoris DSM 13279]
Length = 480
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ + H I GI+ V L L G +
Sbjct: 253 VLDAIGSGATHPKQIAERAGIDPAAVSNYLSALVRLGLVTR 293
>gi|126652341|ref|ZP_01724517.1| putative ArsR family transcriptional regulator [Bacillus sp.
B14905]
gi|126590916|gb|EAZ85029.1| putative ArsR family transcriptional regulator [Bacillus sp.
B14905]
Length = 216
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+R+ I L+ P +D + T + V L
Sbjct: 23 SPKRLEILDILSQGPKSVDALAKSTDMSVANVSQHL 58
>gi|108799896|ref|YP_640093.1| condensin subunit ScpB [Mycobacterium sp. MCS]
gi|119869006|ref|YP_938958.1| condensin subunit ScpB [Mycobacterium sp. KMS]
gi|108770315|gb|ABG09037.1| condensin subunit ScpB [Mycobacterium sp. MCS]
gi|119695095|gb|ABL92168.1| condensin subunit ScpB [Mycobacterium sp. KMS]
Length = 231
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 23 INITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLEL--DLA--- 74
I++ PE E + ++L + P +D + T + +L E+ DLA
Sbjct: 12 IDVATAPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATMLTEMAADLAARD 71
Query: 75 -GRLCHHPEG---KVSLTMHLP 92
G G + + + P
Sbjct: 72 SGIDLREAGGGWRMYTRSRYAP 93
>gi|218888767|ref|YP_002437631.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa LESB58]
gi|218768990|emb|CAW24748.1| putative Rossmann fold nucleotide-binding protein [Pseudomonas
aeruginosa LESB58]
Length = 362
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G+ P V L EL+L GR+ V +
Sbjct: 319 APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRS 361
>gi|304321726|ref|YP_003855369.1| DNA processing protein [Parvularcula bermudensis HTCC2503]
gi|303300628|gb|ADM10227.1| DNA processing protein [Parvularcula bermudensis HTCC2503]
Length = 371
Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 28 YPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
P+ T+ + R++ L+ P D ++ TG+ + LL+L L G + G +L
Sbjct: 304 APQITEDLKERVRNLLSVTPTSRDVLLRETGLAPGTLADCLLDLLLDGHIEEVGGGAYAL 363
Query: 88 T 88
+
Sbjct: 364 S 364
>gi|329923250|ref|ZP_08278735.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
gi|328941485|gb|EGG37776.1| transcriptional regulator, ArsR family [Paenibacillus sp. HGF5]
Length = 310
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
RVRI ++L + P+ + + GI P V + + L+ A +
Sbjct: 25 SDVRVRILEALGDKPMSVGQLAEALGIAQPTVSINVQMLEQAELIVSSQG 74
>gi|311741072|ref|ZP_07714897.1| ArsR family regulatory protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311303874|gb|EFQ79952.1| ArsR family regulatory protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 103
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+RI SL H+ ++ G+ P++Y L L+ AG +
Sbjct: 16 SEPRLRIIASLETDSTHVSELARRLGMSRPLLYQHLNRLEAAGLIES 62
>gi|184200871|ref|YP_001855078.1| SufR family transcriptional regulator [Kocuria rhizophila DC2201]
gi|183581101|dbj|BAG29572.1| putative SufR family transcriptional regulator [Kocuria
rhizophila DC2201]
Length = 254
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQS-LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ T + R R+ L + PI I G+ V L L+ +
Sbjct: 4 PATDHPGTVRTDQDDTTRSRVLSLVLAHGPISAAQIAKDLGLTPAAVRRHLDVLESEQIV 63
Query: 78 C 78
Sbjct: 64 E 64
>gi|170749227|ref|YP_001755487.1| O-methyltransferase family protein [Methylobacterium radiotolerans
JCM 2831]
gi|170655749|gb|ACB24804.1| O-methyltransferase family 2 [Methylobacterium radiotolerans JCM
2831]
Length = 375
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ + L P+ +D + + +L + G L + L
Sbjct: 64 RLDLFAILAEGPLTVDALARRLDLPPDAARRLLRAAESLGLLRVLSGDRFGLA 116
>gi|116873705|ref|YP_850486.1| DeoR family transcriptional regulator [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742583|emb|CAK21707.1| transcriptional regulator, DeoR family [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 250
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+++ G + L+EL+ G + G + H P
Sbjct: 24 ELVEGLGTSESTIRRDLIELEEQGLIERVHGGAKLVISHNQEP 66
>gi|328908190|gb|EGG27949.1| oxidoreductase, NAD-binding domain protein [Propionibacterium sp.
P08]
Length = 766
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH---PEGK 84
+ + + D++ TG+ P V +L +L+ +G + P G
Sbjct: 15 LLELRAGDAMSAADLVEATGLSRPTVISILNDLESSGWVIRGASDPGGL 63
>gi|307328389|ref|ZP_07607565.1| transcriptional regulator, DeoR family [Streptomyces
violaceusniger Tu 4113]
gi|306885962|gb|EFN16972.1| transcriptional regulator, DeoR family [Streptomyces
violaceusniger Tu 4113]
Length = 258
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
++++ G+ A + L +L GRL G ++L H +
Sbjct: 23 TSVEELSRAFGVTASTIRRDLAQLTADGRLARTYGGAMALVAHPEA 68
>gi|311895210|dbj|BAJ27618.1| putative ArsR family transcriptional regulator [Kitasatospora setae
KM-6054]
Length = 323
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
R R+ L P ++ TG+ AP V L L AG H G+ L + P+
Sbjct: 257 ARARLLAEL-AAPATTTELAARTGLSAPTVSHHLAALHDAGLAARHRTGRSVLYLRTPAA 315
Query: 95 Q 95
+
Sbjct: 316 E 316
>gi|13541993|ref|NP_111681.1| transcription regulator (SlyA-related) [Thermoplasma volcanium
GSS1]
gi|14325425|dbj|BAB60329.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 143
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
VRI L+ ++ + T + + L E++ G +
Sbjct: 38 PIEVRILYLLSEDESTVNKLAELTDVTPAWITGTLDEMESQGLIVR 83
>gi|302546565|ref|ZP_07298907.1| putative ArsR family Transcriptional regulator [Streptomyces
hygroscopicus ATCC 53653]
gi|302464183|gb|EFL27276.1| putative ArsR family Transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length = 115
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 30/69 (43%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE 70
F+ + T + + + R+R+ +L+ ++ ++ GI ++ + L +
Sbjct: 4 FAMTEEPEPTGDELVRVLATLSNPHRLRVIAALSRESTYVSELARSLGISRALLQVHLRK 63
Query: 71 LDLAGRLCH 79
L+ AG +
Sbjct: 64 LEAAGLVSA 72
>gi|322434449|ref|YP_004216661.1| DEAD/H associated domain protein [Acidobacterium sp. MP5ACTX9]
gi|321162176|gb|ADW67881.1| DEAD/H associated domain protein [Acidobacterium sp. MP5ACTX9]
Length = 1538
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 23 INITHYPEYTQCERVRI------KQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
P E + Q L P + + + ++ L ++L G
Sbjct: 1029 SPEAPQPLPLTPESATLSLVQGWLQILG--PTTANALATRLNLSPAQIFQSFLTMELQGL 1086
Query: 77 LCH 79
L
Sbjct: 1087 LLR 1089
>gi|288933909|ref|YP_003437968.1| DeoR family transcriptional regulator [Klebsiella variicola
At-22]
gi|290511010|ref|ZP_06550379.1| DeoR family transcriptional regulator, glucitol operon repressor
[Klebsiella sp. 1_1_55]
gi|288888638|gb|ADC56956.1| transcriptional regulator, DeoR family [Klebsiella variicola
At-22]
gi|289776003|gb|EFD84002.1| DeoR family transcriptional regulator, glucitol operon repressor
[Klebsiella sp. 1_1_55]
Length = 257
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ I + L + ++++ H + L+ L+ AG + G V P
Sbjct: 7 QAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDEADPP 66
>gi|206575842|ref|YP_002236953.1| glucitol operon repressor [Klebsiella pneumoniae 342]
gi|206564900|gb|ACI06676.1| glucitol operon repressor [Klebsiella pneumoniae 342]
Length = 257
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ I + L + ++++ H + L+ L+ AG + G V P
Sbjct: 7 QAAILEHLQSQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKDEADPP 66
>gi|154505028|ref|ZP_02041766.1| hypothetical protein RUMGNA_02538 [Ruminococcus gnavus ATCC
29149]
gi|153794507|gb|EDN76927.1| hypothetical protein RUMGNA_02538 [Ruminococcus gnavus ATCC
29149]
Length = 258
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 33 QCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R I + L P + +D++ G+ + L L+ L G
Sbjct: 9 DARRKSILELLRENPTVRVDELAKRMGVSLITIRRDLQYLEEQKLLVRFYGG 60
>gi|172037937|ref|YP_001804438.1| DNA processing protein [Cyanothece sp. ATCC 51142]
gi|171699391|gb|ACB52372.1| DNA processing protein [Cyanothece sp. ATCC 51142]
Length = 374
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
E ++I Q ++ D I+ G+ V LL+L+L G + P +
Sbjct: 318 LDPELLKIFQVISTEGTSFDVIVEKAGLPTAQVSGGLLQLELEGLIMQLPGMRY 371
>gi|282861756|ref|ZP_06270820.1| transcriptional regulator, MarR family [Streptomyces sp. ACTE]
gi|282563572|gb|EFB69110.1| transcriptional regulator, MarR family [Streptomyces sp. ACTE]
Length = 145
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + R+ L+ P+ + I E V ++ L+L G +
Sbjct: 26 EEYDRAAAAHALTGAQARVLGLLSLEPMPMRRIARRLKCEPSNVTGIVDRLELRGLVERR 85
Query: 81 P 81
P
Sbjct: 86 P 86
>gi|153010892|ref|YP_001372106.1| DeoR family transcriptional regulator [Ochrobactrum anthropi ATCC
49188]
gi|151562780|gb|ABS16277.1| transcriptional regulator, DeoR family [Ochrobactrum anthropi
ATCC 49188]
Length = 274
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 33 QCERVRI-KQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ ER RI ++ P+ I D++ T + + L + GR+ G + +H
Sbjct: 3 ERERHRIILSAVQEKPVITIQDLVELTEASEATLRRDIASLHMQGRIKRVRGG--AEAIH 60
Query: 91 LPS 93
P
Sbjct: 61 PPQ 63
>gi|330881837|gb|EGH15986.1| DNA processing protein DprA [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 45
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
P + + +G V L EL+L GR+ +
Sbjct: 2 APHTSEGLSVSSGWPLLKVLAGLTELELDGRISCEAGRWFARA 44
>gi|327480065|gb|AEA83375.1| ATP-dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 1450
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 4 PQIEQNFFSSQSDTNHTKN-INITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHT 57
P + S + + + + E + + + P+ + I
Sbjct: 963 PLERLAWLRSIYPQAACEPCLPLPAGYDQLLDEEEALVELIRARLSGFAPLPVPLIARPL 1022
Query: 58 GIEAPVVYLVLLELDLAGRLCH 79
+ A V L L L+ G +
Sbjct: 1023 ALPASAVALALTRLEAQGYVLR 1044
>gi|283458948|ref|YP_003363596.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
gi|283135011|dbj|BAI65776.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
Length = 491
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 21/68 (30%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
S + PE ++ +L P + DI +T + V L +L
Sbjct: 408 QPTSIMEVSSPPQRAEIPENLSPTESQVYVALTRGPATVADIAENTELSTRQVRYALPKL 467
Query: 72 DLAGRLCH 79
G +
Sbjct: 468 IQRGLVEQ 475
>gi|207743950|ref|YP_002260342.1| transcription regulator (partial sequence) protein [Ralstonia
solanacearum IPO1609]
gi|206595352|emb|CAQ62279.1| putative transcription regulator (partial sequence) protein
[Ralstonia solanacearum IPO1609]
Length = 106
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + R ++ L + ++D+ H + V L L+ A
Sbjct: 2 AERPDDTDLLFKALADPSRRKLLDVLHAHDGRTLNDLCEHLDMTRQGVTQHLHVLETANL 61
Query: 77 LCHHPEGKVSLTMHLPSPQ 95
+ G+ L P PQ
Sbjct: 62 VVTMWRGREKLHFLNPVPQ 80
>gi|239833875|ref|ZP_04682203.1| DeoR family transcriptional regulator [Ochrobactrum intermedium
LMG 3301]
gi|239821938|gb|EEQ93507.1| DeoR family transcriptional regulator [Ochrobactrum intermedium
LMG 3301]
Length = 274
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 33 QCERVRI-KQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ ER RI ++ P+ I D++ T + + L + GR+ G + +H
Sbjct: 3 ERERHRIILSAVQEKPVITIQDLVELTEASEATLRRDIASLHMQGRIKRVRGG--AEAIH 60
Query: 91 LPS 93
P
Sbjct: 61 PPQ 63
>gi|86742265|ref|YP_482665.1| DNA processing protein DprA [Frankia sp. CcI3]
gi|86569127|gb|ABD12936.1| DNA protecting protein DprA [Frankia sp. CcI3]
Length = 446
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 31 YTQCERVRIKQSLNNVP----IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+++ L+ +P + + + TG+ V +L L + G + + G
Sbjct: 329 PRDGLSEAVRELLDAMPARAAVGVSVLARRTGLRPEAVLAMLGPLAVEGLVENVAGGY 386
>gi|295394578|ref|ZP_06804797.1| regulatory protein, ArsR [Brevibacterium mcbrellneri ATCC 49030]
gi|294972471|gb|EFG48327.1| regulatory protein, ArsR [Brevibacterium mcbrellneri ATCC 49030]
Length = 102
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+RI SL H+ ++ G+ P++Y L L+ AG +
Sbjct: 15 SEPRLRIIASLETESTHVSELARRLGMSRPLLYQHLNRLEAAGLIES 61
>gi|322834369|ref|YP_004214396.1| DeoR family transcriptional regulator [Rahnella sp. Y9602]
gi|321169570|gb|ADW75269.1| transcriptional regulator, DeoR family [Rahnella sp. Y9602]
Length = 257
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 36 RVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ I + L +DD+ H + L L+ G + G V P
Sbjct: 7 QAAILEHLQQFGKTAVDDLAAHFATTGTTIRKDLTLLEEEGAVIRTYGGVVLSREEGDQP 66
>gi|317508426|ref|ZP_07966096.1| AsnC family protein [Segniliparus rugosus ATCC BAA-974]
gi|316253273|gb|EFV12673.1| AsnC family protein [Segniliparus rugosus ATCC BAA-974]
Length = 168
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 12 SSQSDTNHTKNINITHYPEY---TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
S S + + PE + +R+ +++ + + + ++ TG+ V +
Sbjct: 2 PSDSSPPPAEGASSAPQPEPVRIDELDRLLVRELVADGRATLAELAKATGLSVSAVQSRV 61
Query: 69 LELDLAGRLCH 79
L+ G +
Sbjct: 62 RRLEAKGVIAR 72
>gi|332158836|ref|YP_004424115.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2]
gi|331034299|gb|AEC52111.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2]
Length = 316
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+R+ ++ + PI + ++ + + ++L L+ G +
Sbjct: 3 LTKAELRVLLAIASGPITLKELASKMNLSKSTLSIILHSLERKGLI 48
>gi|300719107|ref|YP_003743910.1| transcriptional regulator, DeoR family [Erwinia billingiae Eb661]
gi|299064943|emb|CAX62063.1| Transcriptional regulator, DeoR family [Erwinia billingiae Eb661]
Length = 258
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +LN+ + + II GI ++EL+ G G ++L P
Sbjct: 11 RALLTTLNH--VSTERIIRELGISRETARRDIIELEALGLARRVHGGLIALDAEPEPP 66
>gi|227498486|ref|ZP_03928632.1| DNA protecting protein dprA [Acidaminococcus sp. D21]
gi|226903944|gb|EEH89862.1| DNA protecting protein dprA [Acidaminococcus sp. D21]
Length = 367
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHY---PEYTQCERVRIKQSL-NNVPIHIDDIIHHTGI 59
PQ + + + + ++ + P + + + + +++I+ H
Sbjct: 279 PQDLLDVYFPEDVPKGAHAVELSLFETFPVPDRKKAEALYDFIKGGNGKQMEEIMAHFPW 338
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKV 85
V ++LL +++AG + +
Sbjct: 339 PLSFVSMLLLRMEVAGMVRKSAGNRY 364
>gi|94312413|ref|YP_585623.1| glycine dehydrogenase [Cupriavidus metallidurans CH34]
gi|166221519|sp|Q1LHM2|GCSP_RALME RecName: Full=Glycine dehydrogenase [decarboxylating]; AltName:
Full=Glycine cleavage system P-protein; AltName:
Full=Glycine decarboxylase
gi|93356265|gb|ABF10354.1| glycine decarboxylase, PLP-dependent, subunit (protein P) of
glycine cleavage complex [Cupriavidus metallidurans
CH34]
Length = 974
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 8/82 (9%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIH--IDDII-----HHTGIEAPVV 64
++ + E+ + + L ID ++ G+
Sbjct: 15 RPTLAELEARDAFAARHIGPDSAEQQHMLKVLGFESRAALIDAVVPAAIRRRDGMSLGEF 74
Query: 65 YLVLLELDLAGRLCHHPE-GKV 85
L E GRL +V
Sbjct: 75 TAPLTEEAALGRLRALAGKNRV 96
>gi|303228920|ref|ZP_07315730.1| DNA protecting protein DprA [Veillonella atypica ACS-134-V-Col7a]
gi|302516334|gb|EFL58266.1| DNA protecting protein DprA [Veillonella atypica ACS-134-V-Col7a]
Length = 378
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
I + D+I T I + +LL+L++ +
Sbjct: 330 ISVGDLIKKTHIPLQRLQSILLDLEMKHMIEKV 362
>gi|303231443|ref|ZP_07318174.1| DNA protecting protein DprA [Veillonella atypica ACS-049-V-Sch6]
gi|302513880|gb|EFL55891.1| DNA protecting protein DprA [Veillonella atypica ACS-049-V-Sch6]
Length = 378
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
I + D+I T I + +LL+L++ +
Sbjct: 330 ISVGDLIKKTHIPLQRLQSILLDLEMKHMIEKV 362
>gi|261491784|ref|ZP_05988364.1| L-fucose operon activator [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261494286|ref|ZP_05990783.1| L-fucose operon activator [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310052|gb|EEY11258.1| L-fucose operon activator [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261312623|gb|EEY13746.1| L-fucose operon activator [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 248
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ +I L ++ ++ H G+ + L +LD G L G VS
Sbjct: 5 QDKIIAYLAQFDEANVQELAEHCGVSIETIRRDLNKLDKDGLLHRTHGGAVS 56
>gi|240103734|ref|YP_002960043.1| hypothetical protein TGAM_1677 [Thermococcus gammatolerans EJ3]
gi|239911288|gb|ACS34179.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length = 70
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+ ++L P +++I TG+ V LL G++
Sbjct: 4 RRVLKALEAGPKTVEEIAKETGLGVMEVRRYLLRFAEGGKVES 46
>gi|147921011|ref|YP_685179.1| hypothetical protein RCIX412 [uncultured methanogenic archaeon
RC-I]
gi|110620575|emb|CAJ35853.1| hypothetical protein RCIX412 [uncultured methanogenic archaeon
RC-I]
Length = 807
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R ++ + P ++I G+ + LL L L R+ HP+G
Sbjct: 660 RNQVLNYVTARPGSTANEICRGLGMNLGTIRYHLLILSLNHRIVSHPDG 708
>gi|322369258|ref|ZP_08043823.1| hypothetical protein ZOD2009_07214 [Haladaptatus paucihalophilus
DX253]
gi|320550990|gb|EFW92639.1| hypothetical protein ZOD2009_07214 [Haladaptatus paucihalophilus
DX253]
Length = 395
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ T + E + R+K+ L ++ I+ TG V ++L E++
Sbjct: 305 TESTTGSAEPAVSDEELLTDEARVKKLLRENGGRMKQVN-IVDETGWSKSKVSMLLSEME 363
Query: 73 LAGRLCHHPEGK---VSLTMHLP 92
G + G+ +SL H P
Sbjct: 364 EDGEISKLRVGRENIISLDGHEP 386
>gi|254476262|ref|ZP_05089648.1| transcriptional regulator, DeoR family [Ruegeria sp. R11]
gi|214030505|gb|EEB71340.1| transcriptional regulator, DeoR family [Ruegeria sp. R11]
Length = 261
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ I L + ++D+ G+ V L +L G+L G V +
Sbjct: 7 QNEIMNLLTTQDRVEVEDLARRFGVSLQTVRTDLRDLSARGQLSRVHGGAVRIA 60
>gi|188590809|ref|YP_001795409.1| IclR family transcriptional regulator [Cupriavidus taiwanensis
LMG 19424]
gi|170937703|emb|CAP62687.1| putative transcriptional regulator, IclR family [Cupriavidus
taiwanensis LMG 19424]
Length = 264
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVR-IKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLL 69
+ +RV + +L + PI + +++ TG+ +Y L+
Sbjct: 7 PTIAPQPASPTSTESAQPAGGADRVLFVLAALAHHGAPITVRELVARTGLPKSTLYRQLM 66
Query: 70 ELDLAGRL 77
L G +
Sbjct: 67 LLKRWGFV 74
>gi|160902764|ref|YP_001568345.1| DNA protecting protein DprA [Petrotoga mobilis SJ95]
gi|160360408|gb|ABX32022.1| DNA protecting protein DprA [Petrotoga mobilis SJ95]
Length = 330
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P I + + N PE + + +I + +N ++D + +
Sbjct: 247 PIISIQHLKELFGITNLEVENYDENPEEME-LKEKILKLINEGNNNLDSLCETLKEDVSA 305
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLT 88
+ +++L++ G+L +L
Sbjct: 306 ILSTIMQLEIDGKLSQENGTYFTLN 330
>gi|329847580|ref|ZP_08262608.1| bacterial regulatory protein, arsR family protein [Asticcacaulis
biprosthecum C19]
gi|328842643|gb|EGF92212.1| bacterial regulatory protein, arsR family protein [Asticcacaulis
biprosthecum C19]
Length = 112
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L+ ++++ + P V L L+ AG +
Sbjct: 14 ADPTRRAILARLSLGETTVNELAEPFQMSLPAVSKHLKVLEKAGLISR 61
>gi|326332925|ref|ZP_08199182.1| LigA [Nocardioidaceae bacterium Broad-1]
gi|325949283|gb|EGD41366.1| LigA [Nocardioidaceae bacterium Broad-1]
Length = 331
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 32 TQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ + L P +D++ +++ V VL L+ G + G+
Sbjct: 7 LDNLEETVYRQLVGAPSANLDELAEAADLDSYAVSAVLAALEGKGLVARASAGQDRYVAS 66
Query: 91 LPS 93
P+
Sbjct: 67 PPA 69
>gi|282163172|ref|YP_003355557.1| hypothetical protein MCP_0502 [Methanocella paludicola SANAE]
gi|282155486|dbj|BAI60574.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 165
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 34 CERVRIKQS--LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
R+ + L P+ D+I TG P V L EL G +
Sbjct: 30 ALHGRVFGAILLAVDPVTQDEISEFTGYSVPAVSSALEELVRVGLVARQ 78
>gi|223986879|ref|ZP_03636856.1| hypothetical protein HOLDEFILI_04179 [Holdemania filiformis DSM
12042]
gi|223961135|gb|EEF65670.1| hypothetical protein HOLDEFILI_04179 [Holdemania filiformis DSM
12042]
Length = 148
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
S++ T I + + +I L ++ IE V +L
Sbjct: 7 ILFSRAYRAQTAQIRPRMADQGISMGQPKILHLLTRSSRTQVELARACDIEPATVSKILD 66
Query: 70 ELDLAGRLCHH 80
++ AG +
Sbjct: 67 LMEQAGMIERV 77
>gi|169828811|ref|YP_001698969.1| ArsR family transcriptional regulator [Lysinibacillus sphaericus
C3-41]
gi|168993299|gb|ACA40839.1| putative ArsR family transcriptional regulator [Lysinibacillus
sphaericus C3-41]
Length = 216
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVL 68
+R+ I L+ P +D + T + V L
Sbjct: 23 SPKRLEILDILSQGPKSVDALAKSTDMSVANVSQHL 58
>gi|317402155|gb|EFV82746.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans
C54]
Length = 287
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 38 RIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R+ +L P+ + ++ TG+ A + +L +L + + G L M L
Sbjct: 33 RLLDALAAQPDPVTLKELSATTGLHASTAHRILNDLVVGRYVERVDNGLYQLGMRL 88
>gi|306846264|ref|ZP_07478825.1| DeoR family transcriptional regulator [Brucella sp. BO1]
gi|306273259|gb|EFM55128.1| DeoR family transcriptional regulator [Brucella sp. BO1]
Length = 274
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 33 QCERVRI-KQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ ER RI ++ P+ I D++ T + + L + GR+ G + +H
Sbjct: 3 ERERHRIILSAVQEKPVITIQDLVELTEASEATLRRDIASLHMQGRIKRVRGG--AEAIH 60
Query: 91 LPS 93
P
Sbjct: 61 PPQ 63
>gi|88799353|ref|ZP_01114931.1| transcriptional regulator, probable glutamate uptake regulator
[Reinekea sp. MED297]
gi|88777892|gb|EAR09089.1| transcriptional regulator, probable glutamate uptake regulator
[Reinekea sp. MED297]
Length = 153
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 33 QCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+I L + + +I + + + L+ G + +V+L
Sbjct: 6 DSTDRQILDLLQHDATLSVQEIADRINLTVSPCWRRIQNLEQKGFIER----RVAL 57
>gi|304570820|ref|YP_003858729.1| hypothetical protein CCNA_04004 [Caulobacter crescentus NA1000]
Length = 319
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 31 YTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC--HHPE 82
Q ++ + ++ + PI + ++ + P V L L+ G + P
Sbjct: 39 PVQPAQMPLLMAIRMHEPISVGELAERLQLAQPTVTRALGPLERNGLVEARRAPG 93
>gi|212223479|ref|YP_002306715.1| hypothetical protein TON_0333 [Thermococcus onnurineus NA1]
gi|212008436|gb|ACJ15818.1| hypothetical protein TON_0333 [Thermococcus onnurineus NA1]
Length = 70
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLE-LDLAGRLCH 79
R+ ++L + P I++I T + V LL L+ G++
Sbjct: 5 RVMKALEDGPKTIEEIAEITKLPKMEVRRYLLRFLE-QGKVES 46
>gi|194367590|ref|YP_002030200.1| DNA-binding transcriptional regulator AgaR [Stenotrophomonas
maltophilia R551-3]
gi|194350394|gb|ACF53517.1| transcriptional regulator, DeoR family [Stenotrophomonas
maltophilia R551-3]
Length = 258
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
R +I Q L + + + D++ G+ A + L + G G +L P
Sbjct: 8 RQQILQLLIEHGSVQVADLVERFGVSAVTIRADLTHFESQGLANRTHGGA-TLVRTPPQE 66
Query: 95 Q 95
Q
Sbjct: 67 Q 67
>gi|256371980|ref|YP_003109804.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008564|gb|ACU54131.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
ferrooxidans DSM 10331]
Length = 151
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC--HHPEGKVSL 87
++ P + ++ TG+ P + +LL L AG + G +L
Sbjct: 22 SDQPTSVAELARRTGLPQPYLEQILLTLKGAGLVRSKRGAGGGYTL 67
>gi|159186547|ref|NP_396176.2| DeoR family transcriptional regulator [Agrobacterium tumefaciens
str. C58]
gi|159141607|gb|AAK90617.2| transcriptional regulator, DeoR family [Agrobacterium tumefaciens
str. C58]
Length = 253
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 31 YTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ RI LN P + + ++ + + L E+ G L G V
Sbjct: 4 PKSVRQERILTELNQAPSLRVAELARRLDVSTETIRRDLDEMTEQGLLNRTYGGAVRSLS 63
Query: 90 HLPS 93
PS
Sbjct: 64 TEPS 67
>gi|30020891|ref|NP_832522.1| DeoR family transcriptional regulator [Bacillus cereus ATCC
14579]
gi|229128109|ref|ZP_04257091.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-Cer4]
gi|29896444|gb|AAP09723.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC
14579]
gi|228655384|gb|EEL11240.1| Transcriptional regulator, DeoR [Bacillus cereus BDRD-Cer4]
Length = 261
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 36 RVRIKQSLNNVPIHI-DDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R +I + LN + D+ + + L ++ G L G + LT
Sbjct: 7 REKILELLNTDGRVVAKDLAERFDMSIDSIRRDLSIMEKDGLLKRTHGGAIELT 60
>gi|296160382|ref|ZP_06843199.1| transcriptional regulator, DeoR family [Burkholderia sp. Ch1-1]
gi|295889363|gb|EFG69164.1| transcriptional regulator, DeoR family [Burkholderia sp. Ch1-1]
Length = 256
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G + P
Sbjct: 7 HQRIRALLSTLQRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAIKPADEAP 64
>gi|91781642|ref|YP_556848.1| DeoR family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91685596|gb|ABE28796.1| transcriptional regulator, DeoR family [Burkholderia xenovorans
LB400]
Length = 256
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G + P
Sbjct: 7 HQRIRALLSTLQRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAIKPADEAP 64
>gi|16127379|ref|NP_421943.1| MarR family transcriptional regulator [Caulobacter crescentus
CB15]
gi|13424817|gb|AAK25111.1| transcriptional regulator, MarR family [Caulobacter crescentus
CB15]
Length = 317
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 31 YTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC--HHPE 82
Q ++ + ++ + PI + ++ + P V L L+ G + P
Sbjct: 37 PVQPAQMPLLMAIRMHEPISVGELAERLQLAQPTVTRALGPLERNGLVEARRAPG 91
>gi|320355022|ref|YP_004196361.1| DNA protecting protein DprA [Desulfobulbus propionicus DSM 2032]
gi|320123524|gb|ADW19070.1| DNA protecting protein DprA [Desulfobulbus propionicus DSM 2032]
Length = 376
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ T + SL+ P ID ++ TG+ ++ +LL+L+L G +
Sbjct: 305 AEKAAATGPSPQVSPAEQHLLLSLDAYPRDIDTLVRMTGLPIVDLHTLLLQLELKGLIRQ 364
Query: 80 HPEGKVSLTM 89
P +
Sbjct: 365 LPGQLYERRL 374
>gi|302540228|ref|ZP_07292570.1| transcriptional repressor AccR [Streptomyces hygroscopicus ATCC
53653]
gi|302457846|gb|EFL20939.1| transcriptional repressor AccR [Streptomyces himastatinicus ATCC
53653]
Length = 259
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 28 YPEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P + ++ L + + I +I I L EL AGRL G V+
Sbjct: 5 APMLRETRHAKLLSILGDEGVLPIGEIAKRLEISEATARRDLAELGRAGRLTRVYGGAVA 64
Query: 87 LTMHLPSP 94
P+P
Sbjct: 65 ----APTP 68
>gi|251788290|ref|YP_003003011.1| DeoR family transcriptional regulator [Dickeya zeae Ech1591]
gi|247536911|gb|ACT05532.1| transcriptional regulator, DeoR family [Dickeya zeae Ech1591]
Length = 276
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 27 DQILDYLKSHNLVTVDELVTVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 83
>gi|110667765|ref|YP_657576.1| transcription regulator [Haloquadratum walsbyi DSM 16790]
gi|109625512|emb|CAJ51939.1| transcription regulator [Haloquadratum walsbyi DSM 16790]
Length = 193
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLL 69
SQS T P + + L N+ DDI G++A V ++
Sbjct: 10 IQSQSFTIDMSKPFQASTPRTCMATKRELVDLLLNDARQSADDIARQLGVDAATVDALVD 69
Query: 70 ELDLAGRLC 78
EL+ G +
Sbjct: 70 ELEADGAVR 78
>gi|260905607|ref|ZP_05913929.1| transcriptional regulator, IclR family protein [Brevibacterium
linens BL2]
Length = 249
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 37 VRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
I + + PI +++ T + V +L L+ G + +G
Sbjct: 12 AEILSLVVKADDPISYTEVVESTELARSTVSRLLSALERNGLVERDGDGLYR 63
>gi|18976604|ref|NP_577961.1| ArsR family transcriptional regulator [Pyrococcus furiosus DSM
3638]
gi|18892169|gb|AAL80356.1| transcription regulatory protein, arsR family [Pyrococcus
furiosus DSM 3638]
Length = 187
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV+I + L P+ + +I G + +Y + L+ AG +
Sbjct: 20 DPTRVKILELLRYHPMTVSEISRVIGKDKSTIYRHIKALEEAGLVE 65
>gi|315644546|ref|ZP_07897678.1| transcriptional regulator, ArsR family protein [Paenibacillus
vortex V453]
gi|315280053|gb|EFU43350.1| transcriptional regulator, ArsR family protein [Paenibacillus
vortex V453]
Length = 310
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
RVRI ++L + P+ + + GI P V + + L+ A +
Sbjct: 25 SDVRVRILEALGDKPMSVGQLAEALGIAQPTVSINVQMLEQADLIVSSQG 74
>gi|271502002|ref|YP_003335028.1| DeoR family transcriptional regulator [Dickeya dadantii Ech586]
gi|270345557|gb|ACZ78322.1| transcriptional regulator, DeoR family [Dickeya dadantii Ech586]
Length = 274
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 25 DQILDYLKSHNLVTVDELVTVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 81
>gi|134101801|ref|YP_001107462.1| DNA-binding transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291010033|ref|ZP_06568006.1| DNA-binding transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133914424|emb|CAM04537.1| predicted DNA-binding transcriptional regulator
[Saccharopolyspora erythraea NRRL 2338]
Length = 256
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ +L +D + G+ V +L L+ AG +
Sbjct: 11 VLTALATGQQTLDQLAERLGVHKSTVLRLLRTLESAGFVRR 51
>gi|170717642|ref|YP_001784720.1| DeoR family transcriptional regulator [Haemophilus somnus 2336]
gi|168825771|gb|ACA31142.1| transcriptional regulator, DeoR family [Haemophilus somnus 2336]
Length = 251
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I L ++ ++ ++ T + L++LD G + G VSL +P
Sbjct: 7 EQILLFLKSHNIATVEQLVKVTDASPATIRRDLIKLDEEGVVIRTHGG-VSLNHFIP 62
>gi|113461065|ref|YP_719133.1| DeoR family transcriptional regulator [Haemophilus somnus 129PT]
gi|112823108|gb|ABI25197.1| transcriptional regulator, DeoR family [Haemophilus somnus 129PT]
Length = 251
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I L ++ ++ ++ T + L++LD G + G VSL +P
Sbjct: 7 EQILLFLKSHNIATVEQLVKVTDASPATIRRDLIKLDEEGVVIRTHGG-VSLNHFIP 62
>gi|327396515|dbj|BAK13936.1| putative HTH-type transcriptional regulator HI1009 [Pantoea
ananatis AJ13355]
Length = 256
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ TG + L++LD G + G V+L +PS
Sbjct: 20 VTVEQLVTVTGASPATIRRDLIKLDHEGVVSRTHGG-VTLNRFIPS 64
>gi|218779628|ref|YP_002430946.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
gi|218761012|gb|ACL03478.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01]
Length = 310
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+I ++ P + D+ G+ V L L+ AG++ P
Sbjct: 253 EEQILATIRRRPCTVQDLAQALGMHEAQVRKHLAGLEQAGKVVLQP 298
>gi|194291229|ref|YP_002007136.1| DNA processing chain a [Cupriavidus taiwanensis LMG 19424]
gi|193225064|emb|CAQ71075.1| similar to smf, putative DNA processing chain A (drpA); putative
exported protein [Cupriavidus taiwanensis LMG 19424]
Length = 400
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCE----RVRIKQSLNNVPIHIDDIIHHTGIE 60
E N + + P Q E + +L P+ +D + +G
Sbjct: 312 LEEINLGPAAPARGQPAAPALAAPPASDQSESADCADPLLAALGYDPVTLDALCERSGQR 371
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSL 87
LLEL+LAG P
Sbjct: 372 PDAAAARLLELELAGLAERLPGNLFRR 398
>gi|15897151|ref|NP_341756.1| hypothetical protein SSO0200 [Sulfolobus solfataricus P2]
gi|284174396|ref|ZP_06388365.1| hypothetical protein Ssol98_07027 [Sulfolobus solfataricus 98/2]
gi|13813336|gb|AAK40546.1| Hypothetical protein SSO0200 [Sulfolobus solfataricus P2]
gi|261601817|gb|ACX91420.1| transcriptional regulator, ArsR family [Sulfolobus solfataricus
98/2]
Length = 99
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
I Q ++ P+ I ++ + + + EL+ G +
Sbjct: 26 ILQLVSITPMSISELTEKLNMSKGNISSHISELENLGLVE 65
>gi|297570437|ref|YP_003691781.1| integral membrane sensor signal transduction histidine kinase
[Desulfurivibrio alkaliphilus AHT2]
gi|296926352|gb|ADH87162.1| integral membrane sensor signal transduction histidine kinase
[Desulfurivibrio alkaliphilus AHT2]
Length = 400
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDI---------IHHT 57
+ S T + E RI +L P+ +I
Sbjct: 211 RADNPEPGSTGEPTTYADPAEPLEPLDRLLTRI-AALAANPMGKKNIQYRVHGLEQAADL 269
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ A V VLL L L P G++SL +
Sbjct: 270 AVPANPVSQVLLNLLLNAIDAVSPGGEISLAVE 302
>gi|206576575|ref|YP_002238860.1| transcriptional regulator, DeoR family [Klebsiella pneumoniae
342]
gi|288935788|ref|YP_003439847.1| DeoR family transcriptional regulator [Klebsiella variicola
At-22]
gi|206565633|gb|ACI07409.1| transcriptional regulator, DeoR family [Klebsiella pneumoniae
342]
gi|288890497|gb|ADC58815.1| transcriptional regulator, DeoR family [Klebsiella variicola
At-22]
Length = 247
Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ I L+ + I +++ + A + L EL+ G L G ++L +
Sbjct: 7 QKHILDRLSENGQLSISELVEGLQVSADTIRRDLSELEKQGVLQKSHGGAIALNV 61
>gi|187922519|ref|YP_001894161.1| DeoR family transcriptional regulator [Burkholderia phytofirmans
PsJN]
gi|187713713|gb|ACD14937.1| transcriptional regulator, DeoR family [Burkholderia phytofirmans
PsJN]
Length = 256
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G + P
Sbjct: 7 HQRIRALLSTLQRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAIKPADEAP 64
>gi|126435524|ref|YP_001071215.1| condensin subunit ScpB [Mycobacterium sp. JLS]
gi|126235324|gb|ABN98724.1| condensin subunit ScpB [Mycobacterium sp. JLS]
Length = 231
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 23 INITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLEL--DLA--- 74
I++ PE E + ++L + P +D + T + +L E+ DLA
Sbjct: 12 IDVATTPELDDSELRNVLEALLLVVDTPATVDQLAEVTDQPGYRIATMLTEMAADLAARD 71
Query: 75 -GRLCHHPEG---KVSLTMHLP 92
G G + + + P
Sbjct: 72 SGIDLREAGGGWRMYTRSRYAP 93
>gi|186474988|ref|YP_001856458.1| DeoR family transcriptional regulator [Burkholderia phymatum
STM815]
gi|184191447|gb|ACC69412.1| transcriptional regulator, DeoR family [Burkholderia phymatum
STM815]
Length = 257
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G V P
Sbjct: 7 HQRIRALLSTLNRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAVKPADEAP 64
>gi|145590566|ref|YP_001152568.1| hypothetical protein Pars_0304 [Pyrobaculum arsenaticum DSM
13514]
gi|145282334|gb|ABP49916.1| conserved hypothetical protein [Pyrobaculum arsenaticum DSM
13514]
Length = 114
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+ +++++ I I +E V +L L+ G + P G+ LT
Sbjct: 8 VLEAISSG-IPPRKIAEILDLEPHDVETILNLLEEKGLIKRGPGGRYLLTEE 58
>gi|304387031|ref|ZP_07369286.1| glycerol-3-phosphate regulon repressor [Neisseria meningitidis
ATCC 13091]
gi|304338903|gb|EFM05002.1| glycerol-3-phosphate regulon repressor [Neisseria meningitidis
ATCC 13091]
Length = 257
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEEAGSLKRHHGG 56
>gi|258653287|ref|YP_003202443.1| DNA protecting protein DprA [Nakamurella multipartita DSM 44233]
gi|258556512|gb|ACV79454.1| DNA protecting protein DprA [Nakamurella multipartita DSM 44233]
Length = 423
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLL 69
+ H + + R+ + + +H +++ +G+ A V L
Sbjct: 336 PGPHDGAVPGEDPRHPTDGLEPTNARVYDAFPTRGSTSVH--ELVVESGLPAATVMGALA 393
Query: 70 ELDLAGRLCH 79
L L G
Sbjct: 394 VLQLHGLADQ 403
>gi|108756815|ref|YP_634746.1| putative O-methyltransferase [Myxococcus xanthus DK 1622]
gi|108460695|gb|ABF85880.1| putative O-methyltransferase [Myxococcus xanthus DK 1622]
Length = 334
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 5/53 (9%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIE---APVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++L + P+ + + + + L+ + + G+ L
Sbjct: 33 VYEALTDGPMSAETLAARLKLSEEGTRTLLEALIACE---AVERQRGGRYRLA 82
>gi|57640349|ref|YP_182827.1| hypothetical protein TK0414 [Thermococcus kodakarensis KOD1]
gi|57158673|dbj|BAD84603.1| hypothetical protein [Thermococcus kodakarensis KOD1]
Length = 63
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
++Q+L + P +++ TG+ A V L EL G +
Sbjct: 11 VQQALEDSPATFSELVRKTGLPAKEVASALDELGRKGAV 49
>gi|192359551|ref|YP_001981630.1| transcriptional regulator kdgR [Cellvibrio japonicus Ueda107]
gi|190685716|gb|ACE83394.1| transcriptional regulator kdgR [Cellvibrio japonicus Ueda107]
Length = 274
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
Q + + + I + L + P+ + G ++ ++L L
Sbjct: 14 QETQDEAHEAERKYRAPALEKGLD-ILELLARSESPMTTSQMAATLGRSVSELFRMVLAL 72
Query: 72 DLAGRLCHHPEGK 84
+ G + P+G+
Sbjct: 73 EYRGYISQVPDGR 85
>gi|83594340|ref|YP_428092.1| DeoR family transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83577254|gb|ABC23805.1| transcriptional regulator, DeoR family [Rhodospirillum rubrum
ATCC 11170]
Length = 264
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 36 RVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ RI L P + ++ G+ + L EL+ G + G V P P
Sbjct: 20 QERIVAELRAGPTLRVSELATTLGVSTETIRRDLDELEARGLINRTYGGAVR--PFGPEP 77
>gi|296156789|ref|ZP_06839627.1| DEAD/H associated domain protein [Burkholderia sp. Ch1-1]
gi|295893388|gb|EFG73168.1| DEAD/H associated domain protein [Burkholderia sp. Ch1-1]
Length = 1515
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
FS N R R+ P+ + I + A V L+
Sbjct: 1036 QFSPPLAAPKGYTGNWNADDALLDVLRARLT---GFGPLPVSAIAAALKLPATSVEQTLM 1092
Query: 70 ELDLAGRLCH 79
L+ G +
Sbjct: 1093 RLEAEGYVMR 1102
>gi|162457289|ref|YP_001619656.1| ribonuclease R [Sorangium cellulosum 'So ce 56']
gi|161167871|emb|CAN99176.1| ribonuclease R [Sorangium cellulosum 'So ce 56']
Length = 790
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 36 RVRIKQSLNN--VPIHIDDIIHHTGIEAPV---VYLVLLELDLAGRLCHHPEGKVS 86
R + L++ +H ++I G+E + +L EL L G + P +
Sbjct: 19 REAVVDLLSSFKRALHANEIAERLGVEPSRYAKLQRLLEELSLEGSIVALPGQRFR 74
>gi|20094872|ref|NP_614719.1| topoisomerase V [Methanopyrus kandleri AV19]
gi|14325803|gb|AAK60014.1| topoisomerase V [Methanopyrus kandleri]
gi|19888102|gb|AAM02649.1| Topoisomerase V [Methanopyrus kandleri AV19]
Length = 984
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 31 YTQCERVRIKQSLNNVPIHI-DDIIHHTGIEAPVV 64
+ RI + L P D+I G+ V
Sbjct: 180 PIDEKEERILEILRENPWTPHDEIARRLGLSVSEV 214
>gi|188581479|ref|YP_001924924.1| ArsR family transcriptional regulator [Methylobacterium populi
BJ001]
gi|179344977|gb|ACB80389.1| transcriptional regulator, ArsR family [Methylobacterium populi
BJ001]
Length = 103
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI L + + +I + + L L+ AG +
Sbjct: 9 ASAARRRILAILAHGEMSAGEIAARFDMTRASISQHLSVLEAAGLVTS 56
>gi|146303050|ref|YP_001190366.1| HxlR family transcriptional regulator [Metallosphaera sedula DSM
5348]
gi|145701300|gb|ABP94442.1| transcriptional regulator, HxlR family [Metallosphaera sedula DSM
5348]
Length = 111
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 35 ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+ + + L + P + ++ TG+ + + L ++ AG +
Sbjct: 27 ARLLVLRYLFDGPKGFNQLLRETGLSSKTLSSTLKFMEEAGIVER 71
>gi|187922307|ref|YP_001893949.1| filamentation induced by cAMP protein Fic [Burkholderia
phytofirmans PsJN]
gi|187713501|gb|ACD14725.1| filamentation induced by cAMP protein Fic [Burkholderia
phytofirmans PsJN]
Length = 398
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 38 RIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
R+ L P + + ++ TG+ AP + L +L+ G + +
Sbjct: 322 RVHDLLQENPFLTANILVDRTGLSAPTINAALADLERLGVVEEVTGRR 369
>gi|33594320|ref|NP_881964.1| IclR family transcriptional regulator [Bordetella pertussis
Tohama I]
gi|33598061|ref|NP_885704.1| IclR family transcriptional regulator [Bordetella parapertussis
12822]
gi|33602953|ref|NP_890513.1| IclR family transcriptional regulator [Bordetella bronchiseptica
RB50]
gi|33564395|emb|CAE43701.1| IclR family transcriptional regulator [Bordetella pertussis
Tohama I]
gi|33566619|emb|CAE38828.1| IclR family transcriptional regulator [Bordetella parapertussis]
gi|33568584|emb|CAE34342.1| IclR family transcriptional regulator [Bordetella bronchiseptica
RB50]
gi|332383731|gb|AEE68578.1| IclR family transcriptional regulator [Bordetella pertussis CS]
Length = 282
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 38 RIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R+ +L P+ + ++ TG+ A + +L +L + + G L M L
Sbjct: 35 RLLDALAAQPEPVTLKELSATTGLHASTAHRILNDLVVGRYVERVDNGLYQLGMRL 90
>gi|313622673|gb|EFR93038.1| DeoR family transcriptional regulator [Listeria innocua FSL
J1-023]
Length = 250
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLDTSESTIRRDLIELEEQGLIERVHGGAKLV 59
Query: 88 TMHLPSP 94
H P
Sbjct: 60 ISHNQEP 66
>gi|313617538|gb|EFR89877.1| DeoR family transcriptional regulator [Listeria innocua FSL
S4-378]
Length = 265
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 17 LNAERKQLIMESIEKLGV--IKLQELVEGLDTSESTIRRDLIELEEQGLIERVHGGAKLV 74
Query: 88 TMHLPSP 94
H P
Sbjct: 75 ISHNQEP 81
>gi|290509814|ref|ZP_06549185.1| DeoR family transcriptional regulator [Klebsiella sp. 1_1_55]
gi|289779208|gb|EFD87205.1| DeoR family transcriptional regulator [Klebsiella sp. 1_1_55]
Length = 247
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ I L+ + I +++ + A + L EL+ G L G ++L +
Sbjct: 7 QKHILDRLSENGQLSISELVEGLQVSADTIRRDLSELEKQGVLQKSHGGAIALNV 61
>gi|242238145|ref|YP_002986326.1| DeoR family transcriptional regulator [Dickeya dadantii Ech703]
gi|242130202|gb|ACS84504.1| transcriptional regulator, DeoR family [Dickeya dadantii Ech703]
Length = 269
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L + + +D+++ + L++LD G + G V+L +PS
Sbjct: 23 DQIMDYLKGHNLVTVDELVAVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 79
>gi|153854830|ref|ZP_01996053.1| hypothetical protein DORLON_02058 [Dorea longicatena DSM 13814]
gi|149752532|gb|EDM62463.1| hypothetical protein DORLON_02058 [Dorea longicatena DSM 13814]
Length = 248
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ I + + N + +D++ + + + L++L+ + G V+
Sbjct: 7 QAMIVELIKENGSVQVDELAKELNVSSMTIRRDLMKLESGNMIERCHGGAVA 58
>gi|16801493|ref|NP_471761.1| hypothetical protein lin2431 [Listeria innocua Clip11262]
gi|16414953|emb|CAC97658.1| lin2431 [Listeria innocua Clip11262]
Length = 250
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 32 TQCERVRIK----QSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
ER ++ + L I + +++ + L+EL+ G + G +
Sbjct: 2 LNAERKQLIMESIEKLGV--IKLQELVEGLDTSESTIRRDLIELEEQGLIERVHGGAKLV 59
Query: 88 TMHLPSP 94
H P
Sbjct: 60 ISHNQEP 66
>gi|167647372|ref|YP_001685035.1| ArsR family transcriptional regulator [Caulobacter sp. K31]
gi|167349802|gb|ABZ72537.1| transcriptional regulator, ArsR family [Caulobacter sp. K31]
Length = 329
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG---KVS 86
+ R+R+ L + + ++ P V L L AG + P+G
Sbjct: 14 AAGESTRLRVLALLAIEELSVLELCRILDQSQPRVSRHLKLLAEAGLVERFPDGAWVFYR 73
Query: 87 LTMHLP 92
L + P
Sbjct: 74 LALKSP 79
>gi|328542683|ref|YP_004302792.1| Nicotinic acid mononucleotide adenyltransferase [polymorphum
gilvum SL003B-26A1]
gi|326412429|gb|ADZ69492.1| Nicotinic acid mononucleotide adenyltransferase [Polymorphum
gilvum SL003B-26A1]
Length = 254
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +D + H G+ + L EL +GRL G +
Sbjct: 20 VTVDGLAEHFGVTVQTIRRDLAELAESGRLERVHGGAI 57
>gi|299134467|ref|ZP_07027660.1| transcriptional regulator, IclR family [Afipia sp. 1NLS2]
gi|298591214|gb|EFI51416.1| transcriptional regulator, IclR family [Afipia sp. 1NLS2]
Length = 268
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/82 (12%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVV 64
++ + + E ++ +L +++P+ + ++ GI P V
Sbjct: 1 MPLTRPKVAVAASRSSGEPDEAGSSYLEKVFAALEAISSSDLPVSLSEVTARLGIPKPSV 60
Query: 65 YLVLLELDLAGRLCH-HPEGKV 85
+ +L +L+ A + +
Sbjct: 61 HRILAQLEQAHLIKRDLAGKRY 82
>gi|169630560|ref|YP_001704209.1| IclR family regulatory protein [Mycobacterium abscessus ATCC
19977]
gi|169242527|emb|CAM63555.1| Putative regulatory protein, IclR family [Mycobacterium
abscessus]
Length = 296
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 28 YPEYTQCERVRIKQSLNNVPI---HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
P +I L P + +I G+ +L L AG + HP
Sbjct: 3 KPAPAVVRAAQILDHLAGRPTLPLSMTEIAEAVGVNPASTLAILQALTEAGYIVRHP 59
>gi|307132540|ref|YP_003884556.1| glycerol-3-phosphate regulon repressor [Dickeya dadantii 3937]
gi|306530069|gb|ADM99999.1| Glycerol-3-phosphate regulon repressor [Dickeya dadantii 3937]
Length = 267
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 19 DQILDYLKSHNLVTVDELVTVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 75
>gi|254820532|ref|ZP_05225533.1| hypothetical protein MintA_11416 [Mycobacterium intracellulare
ATCC 13950]
Length = 115
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ H G AP V L +L +A +
Sbjct: 9 ADATRVQVLWSLTDHEMSVNELAEHVGKPAPSVSQHLAKLRMARLVR 55
>gi|197105434|ref|YP_002130811.1| transcriptional regulator, ArsR family [Phenylobacterium zucineum
HLK1]
gi|196478854|gb|ACG78382.1| transcriptional regulator, ArsR family [Phenylobacterium zucineum
HLK1]
Length = 113
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R I + L+ P + D+ + P V L L+ AG + G+V
Sbjct: 17 ADPTRRAIVERLSRGPASVSDLARPFDMSLPAVVQHLAVLEAAGVVASEKVGRVRTCRIE 76
Query: 92 PS 93
P+
Sbjct: 77 PA 78
>gi|116075868|ref|ZP_01473127.1| putative DNA processing protein (Smf family) [Synechococcus sp.
RS9916]
gi|116067183|gb|EAU72938.1| putative DNA processing protein (Smf family) [Synechococcus sp.
RS9916]
Length = 369
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 23/90 (25%), Gaps = 4/90 (4%)
Query: 3 HPQIEQNFFSSQSDTNHTKN----INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTG 58
P ++ + + + + +L + + G
Sbjct: 280 RPLLDPEQWVEGLGAGPLTPLCGVQGLRNGVASHKALHDPALMTLLEDGATLQQLAQGLG 339
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ L++L+L G L + L
Sbjct: 340 RSPAALAQQLVQLELEGVLKAEAGMRWRLA 369
>gi|145222491|ref|YP_001133169.1| regulatory protein, ArsR [Mycobacterium gilvum PYR-GCK]
gi|315442938|ref|YP_004075817.1| ArsR family transcriptional regulator [Mycobacterium sp. Spyr1]
gi|145214977|gb|ABP44381.1| transcriptional regulator, ArsR family [Mycobacterium gilvum
PYR-GCK]
gi|315261241|gb|ADT97982.1| transcriptional regulator, ArsR family [Mycobacterium sp. Spyr1]
Length = 141
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ +L + + ++D+ H G AP V L +L +A +
Sbjct: 28 ADATRVQLLWALGSREMSVNDLAAHIGKPAPSVSQHLAKLRMARLVR 74
>gi|84386462|ref|ZP_00989489.1| glycerol-3-phosphate regulon repressor [Vibrio splendidus 12B01]
gi|84378567|gb|EAP95423.1| glycerol-3-phosphate regulon repressor [Vibrio splendidus 12B01]
Length = 254
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 34 CERVR-IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
ER R I L++ I I +++ + + +++L+ +G++ G V L
Sbjct: 4 AERQRTILSLLSHQEVISISELVEQLDVSHMTIRRDIVKLEASGKVVSVSGG-VQLA 59
>gi|327474603|gb|EGF20008.1| lactose PTS family porter repressor [Streptococcus sanguinis
SK408]
Length = 251
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R+ + + + +I+ + V L+EL+ G L G
Sbjct: 12 RLVDRVGT--VTVAEIVESMKVSDMTVRRDLIELESKGLLTRVHGG 55
>gi|317476201|ref|ZP_07935452.1| hypothetical protein HMPREF1016_02435 [Bacteroides eggerthii
1_2_48FAA]
gi|316907612|gb|EFV29315.1| hypothetical protein HMPREF1016_02435 [Bacteroides eggerthii
1_2_48FAA]
Length = 85
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 35 ERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ +I L + P I +++II +G + VY L EL+ +G +
Sbjct: 10 DTRKIVDYLESCPGNIPVENIIRFSGADRLRVYPALFELEQSGFIEIV 57
>gi|317508418|ref|ZP_07966088.1| DNA recombination-mediator protein A [Segniliparus rugosus ATCC
BAA-974]
gi|316253265|gb|EFV12665.1| DNA recombination-mediator protein A [Segniliparus rugosus ATCC
BAA-974]
Length = 382
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + + + E+ R+ +L+ + +I + + V L L+L G
Sbjct: 312 PERPDNSRALDSLSPEQNRLHGALDPRKAKSVAEISRSSALAIGTVRAELSLLELRGFAK 371
Query: 79 HHP-EGKVS 86
G +
Sbjct: 372 EAAEGGWIR 380
>gi|302858048|ref|XP_002960005.1| hypothetical protein VOLCADRAFT_101516 [Volvox carteri f.
nagariensis]
gi|300253593|gb|EFJ38930.1| hypothetical protein VOLCADRAFT_101516 [Volvox carteri f.
nagariensis]
Length = 287
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 24/69 (34%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLEL 71
SS Y + R+RI L + ++ GI A ++ L +
Sbjct: 63 SSSPLERAALLERAAKYAALSDPARLRIVDLLTLGDLSPTELQSELGIPANLLSHHLRSM 122
Query: 72 DLAGRLCHH 80
+LAG H
Sbjct: 123 ELAGLAVRH 131
>gi|261392207|emb|CAX49721.1| putative HTH-type transcriptional regulator [Neisseria
meningitidis 8013]
Length = 257
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEEAGSLKRHHGG 56
>gi|33521040|gb|AAQ21341.1| Csw015 [uncultured bacterium]
Length = 1499
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEY---TQCERVRIKQSLNN-VPIHIDDIIHHTGIE 60
E ++ N + R ++ L P+ +DD+ I
Sbjct: 990 LAEARRLYPEATANPAIEPPAEYASPQGGREDMLRDLLRSRLGGLGPVRVDDLASQLRIG 1049
Query: 61 APVVYLVLLELDLAGRLCH 79
A + LL L G +
Sbjct: 1050 ADEISQALLVLQTEGAVLQ 1068
>gi|241202894|ref|YP_002973990.1| ArsR family transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240856784|gb|ACS54451.1| transcriptional regulator, ArsR family [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 135
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P +++ F + + + R +I L+ + +I + P
Sbjct: 7 RPDLDEETFDDAVEGRSVSAAQRVFH-ALSSAPRRKILAYLSASGLTAGEIADRFSMSKP 65
Query: 63 VVYLVLLELDLAGRLCH 79
V L L+ AG +
Sbjct: 66 AVSQHLSILEAAGLIRR 82
>gi|195541927|gb|ACF98127.1| putative transcriptional regulator Crp/Fnr family protein
[uncultured bacterium 1062]
Length = 236
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
PI DI TG V +L + AG + G+ L + P
Sbjct: 179 PISKQDIAEMTGTTLHTVSRILTAWEAAGLVE---GGRQKLLVRDP 221
>gi|222148994|ref|YP_002549951.1| transcriptional regulator [Agrobacterium vitis S4]
gi|221735980|gb|ACM36943.1| transcriptional regulator [Agrobacterium vitis S4]
Length = 270
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 21 KNINITHYPEYTQCE--RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
I+ P TQ E + +I + L + I + I V L EL+ AG +
Sbjct: 5 HQIDDKGRPVLTQAEDRQAKIVELLREQNFVDIRTLTDRFDISVATVRRDLGELEEAGLI 64
Query: 78 CHHPEGKVSLT 88
G V++
Sbjct: 65 RRTHGGAVNVN 75
>gi|300715357|ref|YP_003740160.1| transcriptional regulator, DeoR-type [Erwinia billingiae Eb661]
gi|299061193|emb|CAX58301.1| transcriptional regulator, DeoR-type [Erwinia billingiae Eb661]
Length = 254
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D ++ + L++LD G + G V+L +P+
Sbjct: 8 DQIMDYLKSHNLVTVDQLVAAISTSPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPA 64
>gi|296532128|ref|ZP_06894894.1| DeoR family transcriptional regulator [Roseomonas cervicalis ATCC
49957]
gi|296267545|gb|EFH13404.1| DeoR family transcriptional regulator [Roseomonas cervicalis ATCC
49957]
Length = 255
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ D + + V L+EL+ AG L G V + P
Sbjct: 20 LSADLLAQELAVSRETVRRDLVELEQAGLLRRVHGGAVLVEAQPEPP 66
>gi|238894458|ref|YP_002919192.1| putative DeoR family regulatory protein [Klebsiella pneumoniae
NTUH-K2044]
gi|238546774|dbj|BAH63125.1| putative DeoR-family bacterial regulatory protein [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 249
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ I L+ + I +++ + A + L +L+ G L G ++L +
Sbjct: 9 QKHILDRLSETGQLSISELVAELQVSADTIRRDLSDLEQQGVLQKSHGGAIALNV 63
>gi|121635218|ref|YP_975463.1| glycerol 3-phosphate regulon repressor [Neisseria meningitidis
FAM18]
gi|120866924|emb|CAM10684.1| glycerol 3-phosphate regulon repressor [Neisseria meningitidis
FAM18]
gi|325132754|gb|EGC55437.1| transcriptional regulator, DeoR family [Neisseria meningitidis
M6190]
gi|325138639|gb|EGC61198.1| transcriptional regulator, DeoR family [Neisseria meningitidis
ES14902]
Length = 257
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEEAGSLKRHHGG 56
>gi|284166878|ref|YP_003405157.1| phenylalanyl-tRNA synthetase, subunit alpha [Haloterrigena
turkmenica DSM 5511]
gi|284016533|gb|ADB62484.1| phenylalanyl-tRNA synthetase, alpha subunit [Haloterrigena
turkmenica DSM 5511]
Length = 508
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 35 ERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
++V + ++ + + +D + + V EL+ G +
Sbjct: 6 QQVAVLEAASADEATSVDALAERADLPPETVTGAAFELETEGLVA 50
>gi|325282954|ref|YP_004255495.1| hypothetical protein Deipr_0718 [Deinococcus proteolyticus MRP]
gi|324314763|gb|ADY25878.1| hypothetical protein Deipr_0718 [Deinococcus proteolyticus MRP]
Length = 283
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 34 CERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ ++L++ P ++ ++ TG+ + L L GR+ P
Sbjct: 16 ANEKLVLEALDSKPEWVETELAKTTGLALSHLRAALASLLDQGRVRRLPG 65
>gi|302186085|ref|ZP_07262758.1| putative IclR-family regulatory protein [Pseudomonas syringae pv.
syringae 642]
Length = 214
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+++ TG+ + +++ L+ G + +G+ L
Sbjct: 5 ELVERTGLIKSTIMRLMVSLETYGFVNRLADGRYMLASE 43
>gi|15803944|ref|NP_289980.1| putative DNA processing protein [Escherichia coli O157:H7 EDL933]
gi|195934928|ref|ZP_03080310.1| putative DNA processing protein [Escherichia coli O157:H7 str.
EC4024]
gi|12518082|gb|AAG58541.1|AE005567_2 putative DNA processing protein [Escherichia coli O157:H7 str.
EDL933]
Length = 431
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|288549621|ref|ZP_06390741.1| transcriptional regulator, ArsR family [Enterobacter cancerogenus
ATCC 35316]
gi|288318586|gb|EFC57524.1| transcriptional regulator, ArsR family [Enterobacter cancerogenus
ATCC 35316]
Length = 261
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 39 IKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ L+ I D+ + A V L +L+ G + G ++L +
Sbjct: 23 LLDILSEQGQASIVDLAEKLQVSADTVRRDLTDLEKQGLAQKNHGGAIALNLSA 76
>gi|15833534|ref|NP_312307.1| DNA processing chain A [Escherichia coli O157:H7 str. Sakai]
gi|187775705|ref|ZP_02992684.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4196]
gi|188024484|ref|ZP_02997129.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4113]
gi|189010085|ref|ZP_03006198.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4076]
gi|189401802|ref|ZP_03006481.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4401]
gi|189402744|ref|ZP_03006826.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4486]
gi|189403679|ref|ZP_03007178.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4501]
gi|189404706|ref|ZP_03007555.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC869]
gi|189405520|ref|ZP_03007840.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC508]
gi|208807238|ref|ZP_03249575.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4206]
gi|208813896|ref|ZP_03255225.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4045]
gi|208818495|ref|ZP_03258815.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4042]
gi|209399908|ref|YP_002272876.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4115]
gi|217326248|ref|ZP_03442332.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
TW14588]
gi|254795354|ref|YP_003080191.1| putative DNA processing protein [Escherichia coli O157:H7 str.
TW14359]
gi|261224719|ref|ZP_05939000.1| putative DNA processing protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254386|ref|ZP_05946919.1| putative DNA processing protein [Escherichia coli O157:H7 str.
FRIK966]
gi|13363754|dbj|BAB37703.1| putative DNA processing chain A [Escherichia coli O157:H7 str.
Sakai]
gi|187771760|gb|EDU35604.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4196]
gi|188018224|gb|EDU56346.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4113]
gi|189002287|gb|EDU71273.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4076]
gi|189358879|gb|EDU77298.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4401]
gi|189364585|gb|EDU83004.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4486]
gi|189369510|gb|EDU87926.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4501]
gi|189374545|gb|EDU92961.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC869]
gi|189380144|gb|EDU98560.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC508]
gi|208727039|gb|EDZ76640.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4206]
gi|208735173|gb|EDZ83860.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4045]
gi|208738618|gb|EDZ86300.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4042]
gi|209161308|gb|ACI38741.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
EC4115]
gi|217322469|gb|EEC30893.1| putative DNA protecting protein DprA [Escherichia coli O157:H7 str.
TW14588]
gi|254594754|gb|ACT74115.1| putative DNA processing protein [Escherichia coli O157:H7 str.
TW14359]
gi|320191549|gb|EFW66199.1| Putative DNA processing chain A [Escherichia coli O157:H7 str.
EC1212]
gi|326337597|gb|EGD61432.1| Putative DNA processing chain A [Escherichia coli O157:H7 str.
1044]
gi|326344652|gb|EGD68401.1| Putative DNA processing chain A [Escherichia coli O157:H7 str.
1125]
Length = 400
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|330976383|gb|EGH76440.1| regulatory protein, DeoR [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 255
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R I LN + +DD+ + L L+ G L G VSL
Sbjct: 10 RHNILALLNEQGEVSVDDLARRFETSEVTIRKDLAALETNGLLLRRYGGAVSL 62
>gi|330898629|gb|EGH30048.1| regulatory protein, DeoR [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 255
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 36 RVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
R I LN + +DD+ + L L+ G L G VSL
Sbjct: 10 RHNILALLNEQGEVSVDDLARRFETSEVTIRKDLAALETNGLLLRRYGGAVSL 62
>gi|293416840|ref|ZP_06659477.1| DNA processing protein [Escherichia coli B185]
gi|291431416|gb|EFF04401.1| DNA processing protein [Escherichia coli B185]
Length = 431
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|291284775|ref|YP_003501593.1| putative DNA processing protein [Escherichia coli O55:H7 str.
CB9615]
gi|290764648|gb|ADD58609.1| Putative DNA processing protein [Escherichia coli O55:H7 str.
CB9615]
Length = 431
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|254561893|ref|YP_003068988.1| hydroxyneurosporene methyltransferase CrtF [Methylobacterium
extorquens DM4]
gi|254269171|emb|CAX25137.1| hydroxyneurosporene methyltransferase CrtF [Methylobacterium
extorquens DM4]
Length = 381
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ + L + P+ D + + A +L + P+G+ +L
Sbjct: 70 RLDLFTLLRDGPLAPDALARRLDLPADRALTLLKAAASLDLITRLPDGRFALA 122
>gi|152969925|ref|YP_001335034.1| DeoR transcriptional regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|330014979|ref|ZP_08308015.1| transcriptional regulator, DeoR family [Klebsiella sp. MS 92-3]
gi|150954774|gb|ABR76804.1| putative bacterial regulatory protein, DeoR [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|328532469|gb|EGF59265.1| transcriptional regulator, DeoR family [Klebsiella sp. MS 92-3]
Length = 249
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ I L+ + I +++ + A + L +L+ G L G ++L +
Sbjct: 9 QKHILDRLSETGQLSISELVAELQVSADTIRRDLSDLEQQGVLQKSHGGAIALNV 63
>gi|94985771|ref|YP_605135.1| hypothetical protein Dgeo_1671 [Deinococcus geothermalis DSM
11300]
gi|94556052|gb|ABF45966.1| HTH transcriptional regulator [Deinococcus geothermalis DSM
11300]
Length = 167
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 34 CERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ ++L + P ++ ++ TG+ + L L GR+ P
Sbjct: 16 ANEKLVLKALESKPEWVETELAKTTGLALSHLRAALASLLDQGRVRRLPG 65
>gi|331655017|ref|ZP_08356016.1| putative DNA processing protein [Escherichia coli M718]
gi|331047032|gb|EGI19110.1| putative DNA processing protein [Escherichia coli M718]
Length = 431
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|330684346|gb|EGG96077.1| transcriptional regulator, DeoR family [Staphylococcus
epidermidis VCU121]
Length = 254
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + +++ TG A + L +L LAG+L G
Sbjct: 23 LTLQELMDRTGCSASTIRRDLSKLQLAGKLQRIHGG 58
>gi|323164762|gb|EFZ50554.1| SMF family protein [Shigella sonnei 53G]
Length = 400
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|239636685|ref|ZP_04677687.1| transcriptional regulator, DeoR family [Staphylococcus warneri
L37603]
gi|239598040|gb|EEQ80535.1| transcriptional regulator, DeoR family [Staphylococcus warneri
L37603]
Length = 254
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + +++ TG A + L +L LAG+L G
Sbjct: 23 LTLQELMDRTGCSASTIRRDLSKLQLAGKLQRIHGG 58
>gi|313125671|ref|YP_004035941.1| transcriptional regulator, arsr family [Halogeometricum
borinquense DSM 11551]
gi|312292036|gb|ADQ66496.1| transcriptional regulator, ArsR family [Halogeometricum
borinquense DSM 11551]
Length = 222
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI + L++ P ++ +I + G+ V L +L+ AG +
Sbjct: 15 RRRILRLLSHKPCYVTEISEYLGVSPKAVIDHLRKLEDAGLIES 58
>gi|78060625|ref|YP_367200.1| putative transcriptional regulator [Burkholderia sp. 383]
gi|77965175|gb|ABB06556.1| transcriptional regulator [Burkholderia sp. 383]
Length = 201
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ ++L P+ + + + + + L +L+ G + H
Sbjct: 7 VLRALQREPLTVVQLCESLNVTRTAINMQLKQLEAEGLVRRH 48
>gi|323487505|ref|ZP_08092799.1| hypothetical protein HMPREF9474_04550 [Clostridium symbiosum
WAL-14163]
gi|323694436|ref|ZP_08108607.1| ArsR family Transcriptional regulator [Clostridium symbiosum
WAL-14673]
gi|323399187|gb|EGA91591.1| hypothetical protein HMPREF9474_04550 [Clostridium symbiosum
WAL-14163]
gi|323501517|gb|EGB17408.1| ArsR family Transcriptional regulator [Clostridium symbiosum
WAL-14673]
Length = 92
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG---KVSLTM 89
R I L + P+ DI+ H + + L L AG + G SL
Sbjct: 12 DPTRREILNLLKDGPMAAGDIVEHFKMTGATISHHLSILKSAGLIDDEKNGKYIYYSLNT 71
>gi|226947164|ref|YP_002802237.1| hypothetical protein Avin_51870 [Azotobacter vinelandii DJ]
gi|226722091|gb|ACO81262.1| hypothetical protein Avin_51870 [Azotobacter vinelandii DJ]
Length = 613
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC-HHPEGKV 85
+ Q++ + P D++ T + +V +L+ L AG + H +G+
Sbjct: 38 VLQTIASGPTTPDELSRATSLPRQLVIEILIPLMQAGWIEISHIDGRY 85
>gi|262376935|ref|ZP_06070162.1| DNA protecting protein DprA [Acinetobacter lwoffii SH145]
gi|262308280|gb|EEY89416.1| DNA protecting protein DprA [Acinetobacter lwoffii SH145]
Length = 379
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ L+ V +D + E + L+EL+L G
Sbjct: 327 LYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAG 370
>gi|261401011|ref|ZP_05987136.1| glycerol-3-phosphate regulon repressor [Neisseria lactamica ATCC
23970]
gi|313668060|ref|YP_004048344.1| glycerol 3-phosphate regulon repressor [Neisseria lactamica
ST-640]
gi|269209133|gb|EEZ75588.1| glycerol-3-phosphate regulon repressor [Neisseria lactamica ATCC
23970]
gi|309378507|emb|CBX22860.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313005522|emb|CBN86958.1| glycerol 3-phosphate regulon repressor [Neisseria lactamica
020-06]
Length = 257
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEDAGSLKRHHGG 56
>gi|218779842|ref|YP_002431160.1| ArsR family transcriptional regulator [Desulfatibacillum
alkenivorans AK-01]
gi|218761226|gb|ACL03692.1| transcriptional regulator, ArsR family [Desulfatibacillum
alkenivorans AK-01]
Length = 318
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
R++I +L P +++++ + L +L+ AG
Sbjct: 14 ADPSRLKIVNALLERPQYVEELAQRLDLAVSTTSHHLKKLEAAGL 58
>gi|313680981|ref|YP_004058720.1| DeoR transcriptional regulator [Oceanithermus profundus DSM
14977]
gi|313153696|gb|ADR37547.1| transcriptional regulator, DeoR family [Oceanithermus profundus
DSM 14977]
Length = 251
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL----TMH 90
R ++ + L + ++ G V L EL+ GRL G + L +
Sbjct: 8 RQKLLELLQAEGGLRTAELAQRLGASEATVRRDLAELERQGRLKRVHGGALPLQPGPAVE 67
Query: 91 LP 92
P
Sbjct: 68 PP 69
>gi|325962280|ref|YP_004240186.1| ArsR family transcriptional regulator [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468367|gb|ADX72052.1| transcriptional regulator, ArsR family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 113
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L+ P ++++ I V + L+LAG +
Sbjct: 16 ADPVRRSIIARLSRGPATVNELAEPFEISKQAVSKHIQVLELAGLVTR 63
>gi|294340886|emb|CAZ89281.1| putative transcriptional regulator IclR family [Thiomonas sp.
3As]
Length = 268
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLN-----NVPIHIDDIIHHTGIEAPVVYLVL 68
Q + K+ + E T R+ L+ P+ + DI TG+ + +L
Sbjct: 2 QHSSVSRKSEPLAAPAEPTIQVLGRVFALLDVLAQNPDPMQLKDIGAATGLHPSTAHRIL 61
Query: 69 LELDLAGRLCHHPEGKVSLTMHL 91
+L + + G L M L
Sbjct: 62 NDLVVGHMVERVEAGTYRLGMRL 84
>gi|290476734|ref|YP_003469645.1| transcriptional regulator [Xenorhabdus bovienii SS-2004]
gi|289176078|emb|CBJ82881.1| TRANSCRIPTION REGULATOR PROTEIN [Xenorhabdus bovienii SS-2004]
Length = 157
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 38 RIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
R+ +L + PI I + T + P + VL L+L G + G+
Sbjct: 42 RVLSALAGSGPIGISLLAQKTVSKQPTITRVLQRLELQGHVTRFSNGR 89
>gi|260202031|ref|ZP_05769522.1| hypothetical protein MtubT4_18555 [Mycobacterium tuberculosis T46]
gi|289444451|ref|ZP_06434195.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289417370|gb|EFD14610.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length = 389
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ ++ + L ID+I +G+ V L L++AG
Sbjct: 305 DEPRPGAALDVLSEAERQVYEGLPGRGAATIDEIAVGSGLLPAQVLGPLAILEVAGLAEC 364
Query: 80 HPE 82
Sbjct: 365 RDG 367
>gi|170781198|ref|YP_001709530.1| putative DNA-binding/uptake protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|169155766|emb|CAQ00887.1| putative DNA-binding/uptake protein [Clavibacter michiganensis
subsp. sepedonicus]
Length = 478
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 11/82 (13%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSL------NNVPIHIDDIIHHTGIEAPVVY 65
+ + VR+ +L D+ G+
Sbjct: 398 RDTPSGAADDRVGARAAEDRGDSRVVRVLDALAVRRGRGTA-----DVAARAGLGVAETS 452
Query: 66 LVLLELDLAGRLCHHPEGKVSL 87
VL L+L G + G V
Sbjct: 453 SVLGMLELEGTVARPDGGWVRR 474
>gi|308188785|ref|YP_003932916.1| glycerol-3-phosphate regulon repressor [Pantoea vagans C9-1]
gi|308059295|gb|ADO11467.1| Glycerol-3-phosphate regulon repressor [Pantoea vagans C9-1]
Length = 258
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ + II G+ ++EL+ G G V++ P
Sbjct: 20 VSTERIIRELGVSRETARRDIIELEAQGLARRVHGGLVAIETAAEPP 66
>gi|289745852|ref|ZP_06505230.1| segregation and condensation protein B [Mycobacterium
tuberculosis 02_1987]
gi|289686380|gb|EFD53868.1| segregation and condensation protein B [Mycobacterium
tuberculosis 02_1987]
Length = 197
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 15 SDTNHTKNINITHYPEYTQCER-VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + + I P + R+ ++L + P+ D + T V L
Sbjct: 6 PEHDPSYGIPDIAEPAELDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQL 65
Query: 71 L--DLAGR 76
+ +L GR
Sbjct: 66 MADELTGR 73
>gi|271967796|ref|YP_003341992.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
gi|270510971|gb|ACZ89249.1| transcriptional regulatory protein [Streptosporangium roseum DSM
43021]
Length = 149
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ Q L P+ +I H+G+ V ++ L+ G +
Sbjct: 44 LLQRLG--PLAAGEIAEHSGLAPASVSGLIDRLERKGFVRR 82
>gi|213618606|ref|ZP_03372432.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 375
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ + L++LD G + G V+L P+
Sbjct: 20 VTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGG-VALRRFEPA 64
>gi|134101558|ref|YP_001107219.1| hypothetical protein SACE_5034 [Saccharopolyspora erythraea NRRL
2338]
gi|291008160|ref|ZP_06566133.1| hypothetical protein SeryN2_26876 [Saccharopolyspora erythraea NRRL
2338]
gi|133914181|emb|CAM04294.1| hypothetical protein SACE_5034 [Saccharopolyspora erythraea NRRL
2338]
Length = 373
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + + I L P + +D + +G+ V L L AG++
Sbjct: 241 AALAADEVEADAELIGMLLAFEPRVEVDLLAERSGLAQHRVRAALTRLGTAGQV 294
>gi|300933887|ref|ZP_07149143.1| ArsR family transcriptional regulator [Corynebacterium resistens
DSM 45100]
Length = 110
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVV 64
S QS + + + R+++ + P+ ++++ TG+ V
Sbjct: 15 PGLLSPQSAQRYAQ-----LFKVLADPIRLQLLSHIADTGCDPLTVNELTERTGLSQSTV 69
Query: 65 YLVLLELDLAGRLC 78
L +L AG L
Sbjct: 70 SHHLGKLTEAGLLE 83
>gi|197106113|ref|YP_002131490.1| transcriptional regulator, ArsR family [Phenylobacterium zucineum
HLK1]
gi|196479533|gb|ACG79061.1| transcriptional regulator, ArsR family [Phenylobacterium zucineum
HLK1]
Length = 323
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R+RI L + + + ++ P V L L AG + P+G
Sbjct: 14 AAGEPTRLRILALLAHEELAVLELCRVLDQSQPRVSRHLKLLAEAGLVERFPDG 67
>gi|25028474|ref|NP_738528.1| putative DNA processing protein [Corynebacterium efficiens YS-314]
gi|259507533|ref|ZP_05750433.1| Rossmann-fold nucleotide-binding protein [Corynebacterium efficiens
YS-314]
gi|23493759|dbj|BAC18728.1| putative DNA processing protein [Corynebacterium efficiens YS-314]
gi|259164918|gb|EEW49472.1| Rossmann-fold nucleotide-binding protein [Corynebacterium efficiens
YS-314]
Length = 403
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 24/64 (37%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ + + +R+ +L P ++ TG+ +V +L++L+ G
Sbjct: 318 AQAQYELNYAANPIQGLSRNELRVYDALGRHPREAAEVATETGLTLALVIHLLVDLNSRG 377
Query: 76 RLCH 79
+
Sbjct: 378 LVAR 381
>gi|85709156|ref|ZP_01040222.1| putative transcriptional regulator, ArsR family protein
[Erythrobacter sp. NAP1]
gi|85690690|gb|EAQ30693.1| putative transcriptional regulator, ArsR family protein
[Erythrobacter sp. NAP1]
Length = 105
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH-PEGKV 85
R +I L+ + I I P V L L AG + V
Sbjct: 9 ASTVRRKILAYLSESELTAGQIAERFDISKPAVSQHLTVLQNAGLVESEKRGQYV 63
>gi|320639720|gb|EFX09314.1| putative DNA processing protein [Escherichia coli O157:H7 str.
G5101]
gi|320645219|gb|EFX14235.1| putative DNA processing protein [Escherichia coli O157:H- str.
493-89]
gi|320650530|gb|EFX18996.1| putative DNA processing protein [Escherichia coli O157:H- str. H
2687]
gi|320655722|gb|EFX23645.1| putative DNA processing protein [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661505|gb|EFX28920.1| putative DNA processing protein [Escherichia coli O55:H7 str. USDA
5905]
gi|320666529|gb|EFX33512.1| putative DNA processing protein [Escherichia coli O157:H7 str.
LSU-61]
Length = 400
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|302871223|ref|YP_003839859.1| hypothetical protein COB47_0555 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574082|gb|ADL41873.1| hypothetical protein COB47_0555 [Caldicellulosiruptor obsidiansis
OB47]
Length = 58
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 34 CERVRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + ++L + P+ I DI+ TG++ V + EL G +
Sbjct: 2 SAKDMVLEALKSSPEPMKIQDIVQKTGLDKKEVEKAIKELKSEGLIES 49
>gi|227833917|ref|YP_002835624.1| putative transcriptional regulator, DeoR family [Corynebacterium
aurimucosum ATCC 700975]
gi|262184920|ref|ZP_06044341.1| putative transcriptional regulator, DeoR family protein
[Corynebacterium aurimucosum ATCC 700975]
gi|227454933|gb|ACP33686.1| putative transcriptional regulator, DeoR family [Corynebacterium
aurimucosum ATCC 700975]
Length = 256
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ RI ++++ + + TG A + L EL+ AG L G
Sbjct: 7 QRRIIWAVDSGSKTVSQLQELTGASAVTIRRDLTELEEAGALTRFHGG 54
>gi|74314038|ref|YP_312457.1| putative DNA processing protein [Shigella sonnei Ss046]
gi|73857515|gb|AAZ90222.1| putative DNA processing protein [Shigella sonnei Ss046]
Length = 431
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|116694274|ref|YP_728485.1| DeoR family transcriptional regulator [Ralstonia eutropha H16]
gi|113528773|emb|CAJ95120.1| transcriptional regulator, DeoR-family [Ralstonia eutropha H16]
Length = 259
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 36 RVRIKQS-LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG---KVSLTMHL 91
R I + L+ +++ + G+ V L L GR+ G + + H
Sbjct: 7 RRAILELVLSGEVANVEQLTGSLGVSVATVRRDLTALAREGRIVRTYGGAAALMQVGGHE 66
Query: 92 PS 93
P
Sbjct: 67 PE 68
>gi|317483844|ref|ZP_07942784.1| deoR family Bacterial regulatory protein [Bilophila wadsworthia
3_1_6]
gi|316924947|gb|EFV46093.1| deoR family Bacterial regulatory protein [Bilophila wadsworthia
3_1_6]
Length = 253
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + + + I+ + G+ + + + ELD G L P G
Sbjct: 8 QAILYAVMRQGYVSIESLAEELGVSSQTIRRDISELDRTGMLERRPGG 55
>gi|302380488|ref|ZP_07268953.1| DNA protecting protein DprA [Finegoldia magna ACS-171-V-Col3]
gi|302311431|gb|EFK93447.1| DNA protecting protein DprA [Finegoldia magna ACS-171-V-Col3]
Length = 290
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
SQ K I +I L D+I V + L +++
Sbjct: 216 SQIPEFQNKFIEKPQLSFDLNELESKIFNLLKIDANSPDEISLKLNENISDVLMSLTKME 275
Query: 73 LAGRLCHHPEGKVSL 87
L G + K SL
Sbjct: 276 LLGIVVDI-GSKYSL 289
>gi|169824494|ref|YP_001692105.1| putative Smf protein DNA processing subunit A [Finegoldia magna
ATCC 29328]
gi|303233675|ref|ZP_07320329.1| DNA protecting protein DprA [Finegoldia magna BVS033A4]
gi|167831299|dbj|BAG08215.1| putative Smf protein DNA processing subunit A [Finegoldia magna
ATCC 29328]
gi|302495109|gb|EFL54861.1| DNA protecting protein DprA [Finegoldia magna BVS033A4]
Length = 356
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
SQ K I +I L D+I V + L +++
Sbjct: 282 SQIPEFQNKFIEKPQLSFDLNELESKIFNLLKIDANSPDEISLKLNENISDVLMSLTKME 341
Query: 73 LAGRLCHHPEGKVSL 87
L G + K SL
Sbjct: 342 LLGIVVDI-GSKYSL 355
>gi|297155562|gb|ADI05274.1| DeoR family transcriptional regulator [Streptomyces
bingchenggensis BCW-1]
Length = 279
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQS--LNNVPIHIDDIIHHTGI 59
+ P + ++ + + +R + L + + +D++ +
Sbjct: 1 MGPASSRTPRTTAAPAGAAGAEDPRRLRAP---DRRALIARMILTDGTVVVDELARSLDV 57
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ L L G + G +S H P
Sbjct: 58 TPSTIRRDLALLTEQGTIARTYGGAMS-ASHTAEP 91
>gi|296166985|ref|ZP_06849399.1| TetR family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897665|gb|EFG77257.1| TetR family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 213
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 23/91 (25%)
Query: 14 QSDTNHTKNINITHYPEYTQCERV------RIKQSLNNVPIHIDDIIHHTGIEAPVVY-- 65
+ P E+ R+ + + I +DD+ G+ P Y
Sbjct: 3 TAGQTRALRGRRAIRPSGDDREQAILATAERLLEQRSFADISVDDLARGAGLSRPTFYFY 62
Query: 66 -----LVLLEL----------DLAGRLCHHP 81
VLL L + G + P
Sbjct: 63 FKSKDAVLLSLLEPVIARADSEFDGAVQRLP 93
>gi|226356480|ref|YP_002786220.1| hypothetical protein Deide_15100 [Deinococcus deserti VCD115]
gi|226318470|gb|ACO46466.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 168
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 34 CERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ ++L + P ++ ++ TG+ + L L GR+ P
Sbjct: 16 ANEKLVLKALESKPEWVETELAKTTGLALSHLRAALASLLDQGRVRRLPG 65
>gi|73537408|ref|YP_297775.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134]
gi|72120745|gb|AAZ62931.1| transcriptional regulator, IclR family [Ralstonia eutropha
JMP134]
Length = 285
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ + V+ +L L++ G + G+
Sbjct: 46 ELARRLQVPRSTVFRLLTTLEMLGFVERAEGGR 78
>gi|325128640|gb|EGC51509.1| transcriptional regulator, DeoR family [Neisseria meningitidis
N1568]
Length = 257
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEDAGSLKRHHGG 56
>gi|302387940|ref|YP_003823762.1| transcriptional regulator, DeoR family [Clostridium
saccharolyticum WM1]
gi|302198568|gb|ADL06139.1| transcriptional regulator, DeoR family [Clostridium
saccharolyticum WM1]
Length = 255
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 34 CERV-RIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
ER +I + + ++++ + + L +L G + G VS
Sbjct: 4 AERQIKILNMIQEDGSVQVEELAKELDVSPMTIRRDLEKLQKEGLIERCHGGAVS 58
>gi|145294224|ref|YP_001137045.1| hypothetical protein cgR_0180 [Corynebacterium glutamicum R]
gi|140844144|dbj|BAF53143.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 262
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG-KVSLTMHLPSP 94
ID + TG+ A + L +L+ AG L G K L P P
Sbjct: 23 PGITRIDALTELTGVSAVTIRRDLADLEQAGFLARTHGGAKRVLKRGAPQP 73
>gi|161870415|ref|YP_001599587.1| glycerol 3-phosphate regulon repressor [Neisseria meningitidis
053442]
gi|218768529|ref|YP_002343041.1| glycerol 3-phosphate regulon repressor [Neisseria meningitidis
Z2491]
gi|121052537|emb|CAM08877.1| glycerol 3-phosphate regulon repressor [Neisseria meningitidis
Z2491]
gi|161595968|gb|ABX73628.1| glycerol 3-phosphate regulon repressor [Neisseria meningitidis
053442]
gi|254669815|emb|CBA04161.1| glycerol-3-phosphate regulon repressor [Neisseria meningitidis
alpha153]
gi|316983806|gb|EFV62786.1| glycerol-3-phosphate regulon repressor [Neisseria meningitidis
H44/76]
gi|319410778|emb|CBY91163.1| putative HTH-type transcriptional regulator [Neisseria
meningitidis WUE 2594]
gi|325134636|gb|EGC57276.1| transcriptional regulator, DeoR family [Neisseria meningitidis
M13399]
gi|325144879|gb|EGC67167.1| transcriptional regulator, DeoR family [Neisseria meningitidis
M01-240013]
gi|325199840|gb|ADY95295.1| transcriptional regulator, DeoR family [Neisseria meningitidis
H44/76]
gi|325201763|gb|ADY97217.1| transcriptional regulator, DeoR family [Neisseria meningitidis
M01-240149]
gi|325208493|gb|ADZ03945.1| transcriptional regulator, DeoR family [Neisseria meningitidis
NZ-05/33]
Length = 257
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEDAGSLKRHHGG 56
>gi|121605720|ref|YP_983049.1| regulatory protein, ArsR [Polaromonas naphthalenivorans CJ2]
gi|120594689|gb|ABM38128.1| transcriptional regulator, ArsR family [Polaromonas
naphthalenivorans CJ2]
Length = 112
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
++ ++ R++I L ++ ++ G A + L L G
Sbjct: 5 PPEALTEIAAYFQALSEPTRLQILNLLRQEEHNVGELAQLCGFTAANISRHLTMLTKHGL 64
Query: 77 LCH 79
+
Sbjct: 65 VAR 67
>gi|226363024|ref|YP_002780806.1| AsnC family transcriptional regulator [Rhodococcus opacus B4]
gi|226241513|dbj|BAH51861.1| putative AsnC family transcriptional regulator [Rhodococcus
opacus B4]
Length = 157
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 33 QCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
RI ++L+ P + + TG+ V L +L+ G L
Sbjct: 5 DSLDARILEALSADPRATVIALADKTGLSRNTVQARLGKLEKQGVLQS 52
>gi|332289830|ref|YP_004420682.1| DNA-bindng transcriptional repressor SrlR [Gallibacterium anatis
UMN179]
gi|330432726|gb|AEC17785.1| DNA-bindng transcriptional repressor SrlR [Gallibacterium anatis
UMN179]
Length = 251
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+D ++ T + L++L+ G + G VSL +P
Sbjct: 20 TVDQLVKATNASPATIRRDLIKLNQQGTIIRTHGG-VSLNQFIP 62
>gi|190573230|ref|YP_001971075.1| putative ArsR family transcriptional regulator [Stenotrophomonas
maltophilia K279a]
gi|190011152|emb|CAQ44761.1| putative ArsR family transcriptional regulator [Stenotrophomonas
maltophilia K279a]
Length = 103
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + ++ P + L L+ AG +
Sbjct: 9 ASTARRQILAYLSAGELSAGELAERFDFSKPALSSHLRILEEAGLIER 56
>gi|172064358|ref|YP_001812009.1| IclR family transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|171996875|gb|ACB67793.1| transcriptional regulator, IclR family [Burkholderia ambifaria
MC40-6]
Length = 273
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 8/87 (9%), Positives = 22/87 (25%), Gaps = 13/87 (14%)
Query: 18 NHTKNINITHYPEYTQCERV-----------RIKQSLNNVP--IHIDDIIHHTGIEAPVV 64
T I + + + ++ TG+ +
Sbjct: 2 PPTSTPADPTGDAPDSSAEASSGVAVLDRAFAILHAFGPTDDRLSLAELSRRTGLYKSTI 61
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHL 91
+L L+ G + +G+ ++
Sbjct: 62 LRLLAALEHGGFVRKLDDGQYAVGHEP 88
>gi|113476509|ref|YP_722570.1| DNA protecting protein DprA [Trichodesmium erythraeum IMS101]
gi|110167557|gb|ABG52097.1| DNA protecting protein DprA [Trichodesmium erythraeum IMS101]
Length = 380
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ I + ++ PI +D II TG+ + V LL+L+L G + P +
Sbjct: 322 PNLEPMLAEIFKHISTEPIVLDLIIQKTGLSSGEVSSSLLQLELLGLVTQLPGMRY 377
>gi|227497101|ref|ZP_03927349.1| GntR family transcriptional regulator protein [Actinomyces
urogenitalis DSM 15434]
gi|226833358|gb|EEH65741.1| GntR family transcriptional regulator protein [Actinomyces
urogenitalis DSM 15434]
Length = 255
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 6/72 (8%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLN------NVPIHIDDIIHHTGIEAPVVYLV 67
T + L + P++ID + + V
Sbjct: 2 SPTPVPQPAFEPIPARGLTDDVYDTLLDMLTSGVFEPDAPLYIDRLARSLQVSPTPVREA 61
Query: 68 LLELDLAGRLCH 79
L L+ G +
Sbjct: 62 LARLESTGLISR 73
>gi|330818689|ref|YP_004362394.1| DNA processing protein DprA, putative [Burkholderia gladioli BSR3]
gi|327371082|gb|AEA62438.1| DNA processing protein DprA, putative [Burkholderia gladioli BSR3]
Length = 460
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 16 DTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+ T + E + + +L + P+ +D + GI A + +LL L+LAG
Sbjct: 359 ADHLTPASSAARQGAPLPPEALALLDALGHGPVPVDLLAARAGIAADALPHLLLRLELAG 418
Query: 76 RLCHHPEGKVSLTMHLPSP 94
R+ P + +P
Sbjct: 419 RVASLPGDRYQRLDAPATP 437
>gi|325283259|ref|YP_004255800.1| transcriptional regulator, AsnC family [Deinococcus proteolyticus
MRP]
gi|324315068|gb|ADY26183.1| transcriptional regulator, AsnC family [Deinococcus proteolyticus
MRP]
Length = 167
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 40 KQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+L + + I ++ G+ AP V L L+ AG + + VSL
Sbjct: 27 VDALQHDARLSIRELGRRLGVSAPTVSDRLSRLEAAGVIRSY-GAVVSL 74
>gi|309779721|ref|ZP_07674479.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA]
gi|308921520|gb|EFP67159.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA]
Length = 275
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK-VSLTM 89
++ + V+ +L L++ G + G+ L M
Sbjct: 40 ELARRLKVPRSTVFRLLTTLEVMGFIERVDGGRDFRLGM 78
>gi|307728317|ref|YP_003905541.1| DeoR family transcriptional regulator [Burkholderia sp. CCGE1003]
gi|307582852|gb|ADN56250.1| transcriptional regulator, DeoR family [Burkholderia sp.
CCGE1003]
Length = 256
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G + P
Sbjct: 7 HQRIRALLSTLHRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAIRPADEAP 64
>gi|283786746|ref|YP_003366611.1| glucitol operon repressor [Citrobacter rodentium ICC168]
gi|282950200|emb|CBG89836.1| glucitol operon repressor [Citrobacter rodentium ICC168]
Length = 257
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ I + L ++++ H + L+ L+ AG + G V L P
Sbjct: 7 QAAILEHLQKQGKCSVEELAQHFDTTGTTIRKDLVILENAGTVIRTYGG-VVLNKEESDP 65
>gi|170698298|ref|ZP_02889374.1| transcriptional regulator, IclR family [Burkholderia ambifaria
IOP40-10]
gi|170136789|gb|EDT05041.1| transcriptional regulator, IclR family [Burkholderia ambifaria
IOP40-10]
Length = 273
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVL 68
+ + + + I + + + ++ TG+ + +L
Sbjct: 7 PADPTGDAPDASAEASSGVAVLDRAFA-ILHAFGPTDDRLSLAELSRRTGLYKSTILRLL 65
Query: 69 LELDLAGRLCHHPEGKVSLTMHL 91
L+ G + +G+ ++
Sbjct: 66 AALEHGGFVRKLDDGQYAVGHEP 88
>gi|167957177|ref|ZP_02544251.1| DNA protecting protein DprA [candidate division TM7 single-cell
isolate TM7c]
Length = 167
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+N + P I + LN D++ E L L++ G +
Sbjct: 100 QNPSQISLPVGDTPLENAIIELLNQGVRDGDELQKQAKAEISDFNTTLTMLEINGIIKPL 159
Query: 81 PEGKVSL 87
K L
Sbjct: 160 GANKWCL 166
>gi|326382894|ref|ZP_08204584.1| DNA protecting protein DprA [Gordonia neofelifaecis NRRL B-59395]
gi|326198484|gb|EGD55668.1| DNA protecting protein DprA [Gordonia neofelifaecis NRRL B-59395]
Length = 374
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 15 SDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
D + K + + + ++ + ++L + +D+I +G+ V L LDL
Sbjct: 300 PDGHDLKPESRSTAIDGLPRDQTLVLEALPARGGLTVDEIALVSGVRVADVLRALAGLDL 359
Query: 74 AGRL 77
AG +
Sbjct: 360 AGLV 363
>gi|254172547|ref|ZP_04879222.1| conserved hypothetical protein [Thermococcus sp. AM4]
gi|214033476|gb|EEB74303.1| conserved hypothetical protein [Thermococcus sp. AM4]
Length = 70
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R+ ++L P +++I TG+ V LL G++
Sbjct: 4 RRVLKALETGPKTVEEIAEETGLWVMEVRRYLLRFAEGGKVES 46
>gi|167630715|ref|YP_001681214.1| transcriptional regulator, deor family [Heliobacterium
modesticaldum Ice1]
gi|167593455|gb|ABZ85203.1| transcriptional regulator, deor family [Heliobacterium
modesticaldum Ice1]
Length = 253
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R RI + + + I+ + G+ V L L+ G + G
Sbjct: 7 RKRILEIIKKEEKVEIEPLATELGVSPMTVRRDLNLLERQGLVERTHGG 55
>gi|196250434|ref|ZP_03149126.1| transcriptional regulator, DeoR family [Geobacillus sp. G11MC16]
gi|196210093|gb|EDY04860.1| transcriptional regulator, DeoR family [Geobacillus sp. G11MC16]
Length = 253
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV---SLTMHLP 92
+ I+++ + + L L+ G++ G + +L P
Sbjct: 20 VDIEELSQQLNVSTMTIRRDLALLEREGKIVRTHGGAIHPRALIQETP 67
>gi|116753925|ref|YP_843043.1| ArsR family transcriptional regulator [Methanosaeta thermophila
PT]
gi|116665376|gb|ABK14403.1| transcriptional regulator, ArsR family [Methanosaeta thermophila
PT]
Length = 204
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI Q L+ P + ++I + V L L+ AG +
Sbjct: 15 RRRILQLLSFRPFYFNEIAKRLDVGPKAVIDHLGVLEAAGLIEC 58
>gi|127514662|ref|YP_001095859.1| DNA protecting protein DprA [Shewanella loihica PV-4]
gi|126639957|gb|ABO25600.1| DNA protecting protein DprA [Shewanella loihica PV-4]
Length = 339
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ +D ++ H+G +V LLEL+L G + P G + L
Sbjct: 286 ASLLASVGYEATPLDVVVEHSGKTIELVLEQLLELELQGWVSAVPGGYIRL 336
>gi|115359553|ref|YP_776691.1| IclR family transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|115284841|gb|ABI90357.1| transcriptional regulator, IclR family [Burkholderia ambifaria
AMMD]
Length = 273
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVL 68
+ + + + I + + + ++ TG+ + +L
Sbjct: 7 PADPTGDAPDASAEASSGVAVLDRAFA-ILHAFGPTDDRLSLAELSRRTGLYKSTILRLL 65
Query: 69 LELDLAGRLCHHPEGKVSLTMHL 91
L+ G + +G+ ++
Sbjct: 66 AALEHGGFVRKLDDGQYAVGHEP 88
>gi|325142735|gb|EGC65111.1| transcriptional regulator, DeoR family [Neisseria meningitidis
961-5945]
gi|325198671|gb|ADY94127.1| transcriptional regulator, DeoR family [Neisseria meningitidis
G2136]
Length = 257
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ +D++ + + + EL+ AG L H G
Sbjct: 21 MSVDELAAALDVTPQTIRRDIRELEDAGSLKRHHGG 56
>gi|291298006|ref|YP_003509284.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290567226|gb|ADD40191.1| transcriptional regulator, LuxR family [Stackebrandtia
nassauensis DSM 44728]
Length = 323
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 32 TQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELD 72
+ + R+ Q+L + P +D + T + + L EL
Sbjct: 7 PESDHGRVYQALVSAPRSTVDALARRTLLSPSAIRDSLTELQ 48
>gi|56477733|ref|YP_159322.1| IclR family transciptional regulator [Aromatoleum aromaticum
EbN1]
gi|56313776|emb|CAI08421.1| putative transcription regulator protein, IclR family
[Aromatoleum aromaticum EbN1]
Length = 263
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
++ L P + I TG+ + +L + +G + G L
Sbjct: 22 KLLDVLAHHPDPAPLKQIAQETGLHPSTAHRILGAMSQSGFVERGEGGTYRL 73
>gi|331697954|ref|YP_004334193.1| IclR family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326952643|gb|AEA26340.1| transcriptional regulator, IclR family [Pseudonocardia
dioxanivorans CB1190]
Length = 255
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 42 SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
L + + + +I+ TGI V+ ++ EL + P G V L M L
Sbjct: 26 RLGDDELSLAEIVRRTGIAKATVHRLVSELAEWQVVERSPGGGVRLGMRL 75
>gi|262042931|ref|ZP_06016076.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039771|gb|EEW40897.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 249
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
+ I L+ + I +++ + A + L +L+ G L G ++L +
Sbjct: 9 QKHILDRLSETGQLSISELVAELQVSADTIRRDLSDLEQQGVLKKSHGGAIALNV 63
>gi|242239827|ref|YP_002988008.1| DeoR family transcriptional regulator [Dickeya dadantii Ech703]
gi|242131884|gb|ACS86186.1| transcriptional regulator, DeoR family [Dickeya dadantii Ech703]
Length = 258
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ + +I H G+ V +L+L+ G L G V+ P
Sbjct: 20 VTTEQLIQHLGVSRETVRRDILKLEAEGALRRVHGGVVATGPEPEPP 66
>gi|153007961|ref|YP_001369176.1| filamentation induced by cAMP protein Fic [Ochrobactrum anthropi
ATCC 49188]
gi|151559849|gb|ABS13347.1| filamentation induced by cAMP protein Fic [Ochrobactrum anthropi
ATCC 49188]
Length = 393
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++ +RI P + + ++ TG+ AP V L +L+ G +
Sbjct: 304 EDRERITTESDRAGSALRIHDLFQQNPFLTANQLVQQTGLSAPTVNAALADLERFGIVEE 363
Query: 80 HPE---GKV 85
G+V
Sbjct: 364 ITGRKRGRV 372
>gi|187926678|ref|YP_001893023.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J]
gi|241666190|ref|YP_002984549.1| IclR family transcriptional regulator [Ralstonia pickettii 12D]
gi|187728432|gb|ACD29596.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J]
gi|240868217|gb|ACS65877.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D]
Length = 275
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK-VSLTM 89
++ + V+ +L L++ G + G+ L M
Sbjct: 40 ELARRLKVPRSTVFRLLTTLEVMGFIERVDGGRDFRLGM 78
>gi|332674429|gb|AEE71245.1| transcriptional regulator [Propionibacterium acnes 266]
Length = 228
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 54 IHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH-LPSP 94
+ TG + L +L+ G+L G V++ + P P
Sbjct: 1 MELTGASPATIRRDLTDLEGHGQLRKVHGGAVAVNLRGTPMP 42
>gi|324106147|gb|ADY18315.1| hypothetical protein [Rhodococcus rhodochrous]
Length = 256
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+ ++L+ P+ + + TG+ + +L +L AG L P
Sbjct: 20 VLEALSTGPMTLAKVTARTGLPRSSAHRLLEQLANAGWLARSP 62
>gi|298244203|ref|ZP_06968009.1| ROK family protein [Ktedonobacter racemifer DSM 44963]
gi|297551684|gb|EFH85549.1| ROK family protein [Ktedonobacter racemifer DSM 44963]
Length = 407
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP------EGKVSLT 88
+ + L ++ P + G+ P V L L+ A + G+++ T
Sbjct: 24 ERSLLEYLRSHGPTSRAQLARVVGLSKPTVSQALASLEQAQLVRAVGQSVSNKGGRIA-T 82
Query: 89 MHLPSPQ 95
++ P+P+
Sbjct: 83 LYEPNPE 89
>gi|291299465|ref|YP_003510743.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290568685|gb|ADD41650.1| transcriptional regulator, ArsR family [Stackebrandtia
nassauensis DSM 44728]
Length = 108
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+R+RI L +H+ ++ G+ P++Y+ L L+ AG +
Sbjct: 16 TQRLRIIAELAGGRVHVSELARRLGLSRPLLYMHLERLEKAGIV 59
>gi|297162322|gb|ADI12034.1| DeoR family transcriptional regulator [Streptomyces
bingchenggensis BCW-1]
Length = 258
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
++++ G+ A + L +L AGRL G ++L H +
Sbjct: 24 SVEELSRTFGVTASTIRRDLAQLTAAGRLARTYGGAMALVAHPEA 68
>gi|259910270|ref|YP_002650626.1| Transcriptional regulator, DeoR family [Erwinia pyrifoliae
Ep1/96]
gi|224965892|emb|CAX57425.1| Transcriptional regulator, DeoR family [Erwinia pyrifoliae
Ep1/96]
gi|283480393|emb|CAY76309.1| Glycerol-3-phosphate regulon repressor [Erwinia pyrifoliae DSM
12163]
Length = 264
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +L + + II GI ++ L+ G G V+L P
Sbjct: 11 RALLSTLGQ--VSTERIIKELGISRETARRDIIVLEAQGLAKRVHGGLVALDATPEPP 66
>gi|108758017|ref|YP_634671.1| ROK family transcriptional regulator [Myxococcus xanthus DK 1622]
gi|108461897|gb|ABF87082.1| transcriptional regulator, ROK family [Myxococcus xanthus DK
1622]
Length = 408
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I T + V ++ +L+ +G + G VS P+
Sbjct: 37 EIARRTELSPSTVSAIVADLERSGLVRSIGAG-VSRGGRRPT 77
>gi|310765850|gb|ADP10800.1| Transcriptional regulator, DeoR family [Erwinia sp. Ejp617]
Length = 264
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ +L + + II GI ++ L+ G G V+L P
Sbjct: 11 RALLSTLGQ--VSTERIIKELGISRETARRDIIVLEAQGLAKRVHGGLVALDATPEPP 66
>gi|297160400|gb|ADI10112.1| transcriptional regulator, ArsR family protein [Streptomyces
bingchenggensis BCW-1]
Length = 266
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 32 TQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
R R+ L+ + ++ + V L+ L+ AG + G+ L
Sbjct: 9 ADASRRRLLDRLHTRNGQTLRELCEGLEMSRQAVSKHLVVLEAAGLVTAVRRGREKLHYL 68
Query: 91 LPSP 94
P P
Sbjct: 69 NPVP 72
>gi|271963718|ref|YP_003337914.1| hypothetical protein Sros_2188 [Streptosporangium roseum DSM
43021]
gi|270506893|gb|ACZ85171.1| hypothetical protein Sros_2188 [Streptosporangium roseum DSM
43021]
Length = 411
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 31/81 (38%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVY 65
++ Q+ H I + +R+ + +L + P+ + ++ TG + +
Sbjct: 5 LDPEQLREQAPGPHLDLIGTMAFRAAGAAQRLGVFDALLDGPLPVTELAARTGTDEGTLP 64
Query: 66 LVLLELDLAGRLCHHPEGKVS 86
++L L G L P +
Sbjct: 65 VLLDALVSFGYLDRAPGQVYA 85
>gi|332186061|ref|ZP_08387807.1| hxlR-like helix-turn-helix family protein [Sphingomonas sp. S17]
gi|332013876|gb|EGI55935.1| hxlR-like helix-turn-helix family protein [Sphingomonas sp. S17]
Length = 95
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHTG-IEAPVVYLVLLELDLAGRLCH 79
I L + P +++ G + ++ L EL++ G +
Sbjct: 12 ILYHLQDGPTRFNELRRRAGDVTPRMLTNQLRELEIDGLIER 53
>gi|310816131|ref|YP_003964095.1| glycerol-3-phosphate transcriptional regulator protein
[Ketogulonicigenium vulgare Y25]
gi|308754866|gb|ADO42795.1| glycerol-3-phosphate transcriptional regulator protein
[Ketogulonicigenium vulgare Y25]
Length = 275
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 22 NINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
N Q I + L + + D+ + V L EL+ G L
Sbjct: 7 QANPQRQKLPGQARLAAILERLYAGGSVSVVDLAKEFNVSDMTVRRDLAELEADGYLERV 66
Query: 81 PEGKV 85
G V
Sbjct: 67 HGGAV 71
>gi|302525184|ref|ZP_07277526.1| DNA processing chain A [Streptomyces sp. AA4]
gi|302434079|gb|EFL05895.1| DNA processing chain A [Streptomyces sp. AA4]
Length = 390
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 17 TNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
T + E R+ +L +++ G+ V +L L++ G
Sbjct: 313 TAAPSAEPNRRPTDNLGPEASRVYDALLPRAGRAPEEVAESAGVPVSRVRALLPALEVDG 372
Query: 76 RLCH 79
Sbjct: 373 FAVR 376
>gi|295095898|emb|CBK84988.1| Transcriptional regulators of sugar metabolism [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 247
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
I ++ + A + L +L+ G + G ++L +
Sbjct: 21 SITELAERLQVSADTIRRDLTDLEKQGLAQKNHGGAIALNLST 63
>gi|289193290|ref|YP_003459231.1| transcriptional regulator, ArsR family [Methanocaldococcus sp.
FS406-22]
gi|288939740|gb|ADC70495.1| transcriptional regulator, ArsR family [Methanocaldococcus sp.
FS406-22]
Length = 94
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
RV+I LN P +I ++ + PVVY L +L+ AG +
Sbjct: 16 PIRVKILYILNKQPKNIYELAKELELSRPVVYAHLRKLEEAGLVES 61
>gi|33602646|ref|NP_890206.1| transcription regulator AsnC [Bordetella bronchiseptica RB50]
gi|33577088|emb|CAE35644.1| AsnC-family transcriptional regulator [Bordetella bronchiseptica
RB50]
Length = 183
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
P RI L + ++ + + L+ AG + G V
Sbjct: 22 MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIR----GYV 77
Query: 86 SLT 88
+L
Sbjct: 78 ALA 80
>gi|119492307|ref|ZP_01623654.1| SMF protein [Lyngbya sp. PCC 8106]
gi|119453192|gb|EAW34359.1| SMF protein [Lyngbya sp. PCC 8106]
Length = 390
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 30/83 (36%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+E +S S + + + + + + P D I+ G++ +V
Sbjct: 307 LLESQPKTSSSSVGTLEPTLEPTLEPTLEPNLATVFKVIYSEPTAFDVIVQQAGLDTGIV 366
Query: 65 YLVLLELDLAGRLCHHPEGKVSL 87
LL+L+L G + P +
Sbjct: 367 SSSLLQLELLGLVSQLPGMRYQR 389
>gi|315646635|ref|ZP_07899752.1| transcriptional regulator, ArsR family protein [Paenibacillus
vortex V453]
gi|315277961|gb|EFU41282.1| transcriptional regulator, ArsR family protein [Paenibacillus
vortex V453]
Length = 305
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
ER+R+ + + + P + ++ G + L+ L AG L H
Sbjct: 227 ADPERLRLLRYIADEPKAVSEMATELGQPYEDLMHHLMILRAAGLLRSH 275
>gi|229579832|ref|YP_002838231.1| ArsR family transcriptional regulator [Sulfolobus islandicus
Y.G.57.14]
gi|228010547|gb|ACP46309.1| transcriptional regulator, ArsR family [Sulfolobus islandicus
Y.G.57.14]
Length = 99
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R+ I Q L+ +P+ I ++ + + + EL+ G +
Sbjct: 23 RINILQLLSIMPMSISELTEKLNMSKGNISSHISELENLGLVE 65
>gi|297565440|ref|YP_003684412.1| DeoR family transcriptional regulator [Meiothermus silvanus DSM
9946]
gi|296849889|gb|ADH62904.1| transcriptional regulator, DeoR family [Meiothermus silvanus DSM
9946]
Length = 267
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R +I + L + +D+++ G+ + L EL+ G L G +
Sbjct: 7 RSKIIELLEQKGAVQVDELVGLFGVSHVTIRKDLTELEERGLLQRTHGGAI 57
>gi|296102431|ref|YP_003612577.1| transcriptional regulator, DeoR family [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295056890|gb|ADF61628.1| transcriptional regulator, DeoR family [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 247
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 39 IKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ ++ I ++ + A + L +L+ G + G ++L +
Sbjct: 10 VLDIISEQGQASITELAEKLQVSADTIRRDLTDLEKQGLAQKNHGGAIALNLSA 63
>gi|84494338|ref|ZP_00993457.1| putative transcriptional regulator, ArsR family protein
[Janibacter sp. HTCC2649]
gi|84383831|gb|EAP99711.1| putative transcriptional regulator, ArsR family protein
[Janibacter sp. HTCC2649]
Length = 118
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
T + R I L++ + ++ + P + L L+ AG +
Sbjct: 6 STTFAALADPTRRAILARLSSGDATVGELAEPFAMSLPAISKHLTVLERAGLIT 59
>gi|254559305|ref|YP_003066400.1| AsrR family transcriptional regulator [Methylobacterium
extorquens DM4]
gi|254266583|emb|CAX22347.1| putative transcriptional regulator, ArsR family [Methylobacterium
extorquens DM4]
Length = 123
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 2/88 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ S ++ + R +I L++ ++ DI + +
Sbjct: 1 MDRPDL--SMVSSSTKHPAMQRVFEALASSVRRQILAYLSHTELNAGDIAARFAMSKASI 58
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHLP 92
L L+ AG + GK P
Sbjct: 59 SQHLSILEAAGLVESERRGKFIFYRQTP 86
>gi|149190433|ref|ZP_01868704.1| Smf protein [Vibrio shilonii AK1]
gi|148835687|gb|EDL52653.1| Smf protein [Vibrio shilonii AK1]
Length = 366
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 20 TKNINITHYPEYTQCERVR---IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+K + T + + E + + ++ +D + T I V LLEL+L G
Sbjct: 293 SKKVQPTLFDQVIDKEELPFPDLLANVGIEATPVDILAQKTHIPVQEVMQQLLELELLGH 352
Query: 77 LCHHPEGKV 85
+ G +
Sbjct: 353 VVAVNGGYI 361
>gi|163856140|ref|YP_001630438.1| AsnC family transcriptional regulator [Bordetella petrii DSM
12804]
gi|163259868|emb|CAP42169.1| transcriptional regulator, AsnC-family [Bordetella petrii]
Length = 176
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 26 THYPEYTQCERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T+ P RI L + ++ + + L+ AG + G
Sbjct: 20 TNVPTMLDSTDRRILSILQTDSSLTNVELARRVHLSPSPCLARVKALEAAGVIR----GY 75
Query: 85 VSLT 88
V+L
Sbjct: 76 VALA 79
>gi|295681133|ref|YP_003609707.1| ArsR family transcriptional regulator [Burkholderia sp. CCGE1002]
gi|295441028|gb|ADG20196.1| transcriptional regulator, ArsR family [Burkholderia sp.
CCGE1002]
Length = 111
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + R ++ L + ++D+ H + V L L+ A
Sbjct: 2 AERPDDTDLLFKALADPSRRKLLDVLHAHDGQTLNDLCEHLDMTRQGVTQHLGLLEAANL 61
Query: 77 LCHHPEGKVSLTMHLPSP 94
+ G+ L P P
Sbjct: 62 VVTVRSGREKLHFLNPVP 79
>gi|319789158|ref|YP_004150791.1| DNA protecting protein DprA [Thermovibrio ammonificans HB-1]
gi|317113660|gb|ADU96150.1| DNA protecting protein DprA [Thermovibrio ammonificans HB-1]
Length = 334
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
E R L+ P+ D G++ +L +++L G + G
Sbjct: 282 PEFERAYSLLS-APLTADAFAVKLGVQIHEALRLLAQMELLGLVSRE-GGLYR 332
>gi|194364840|ref|YP_002027450.1| ArsR family transcriptional regulator [Stenotrophomonas
maltophilia R551-3]
gi|194347644|gb|ACF50767.1| transcriptional regulator, ArsR family [Stenotrophomonas
maltophilia R551-3]
Length = 103
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L+ + ++ P + L L+ AG +
Sbjct: 9 ASTARRQILAYLSAGELSAGELAERFDFSKPALSSHLRILEEAGLIER 56
>gi|85708450|ref|ZP_01039516.1| hypothetical protein NAP1_04405 [Erythrobacter sp. NAP1]
gi|85689984|gb|EAQ29987.1| hypothetical protein NAP1_04405 [Erythrobacter sp. NAP1]
Length = 110
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R + + L+ P+ + ++ + V + L+ AG + H G+ + P
Sbjct: 17 DPTRRMMVERLSQRPLTVSELAEPLAMSMAGVSKHVGVLEKAGIVARHKRGRERVCTLQP 76
>gi|326773612|ref|ZP_08232895.1| transcriptional regulator, DeoR family [Actinomyces viscosus
C505]
gi|326636842|gb|EGE37745.1| transcriptional regulator, DeoR family [Actinomyces viscosus
C505]
Length = 258
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 36 RVRIKQS-LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
I ++ +HIDDII G+ A L L + G ++ P
Sbjct: 7 HSAILDIIMDEGSVHIDDIITRLGVSAATARRDLDHLADQQLVSRTRGGAIANPTSTEPP 66
>gi|302549515|ref|ZP_07301857.1| transcriptional regulator [Streptomyces viridochromogenes DSM
40736]
gi|302467133|gb|EFL30226.1| transcriptional regulator [Streptomyces viridochromogenes DSM
40736]
Length = 267
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
++++ G+ A + L +L GRL G ++L H +
Sbjct: 22 SVEELSQLFGVTASTIRRDLAKLTTDGRLARTYGGAMALAAHPEA 66
>gi|300784403|ref|YP_003764694.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299793917|gb|ADJ44292.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 111
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L+ ++++ + P V L L+ AG +
Sbjct: 13 ADPTRRAILARLSAGEATVNELAEPFPMSLPAVSRHLKVLEEAGLITR 60
>gi|270262019|ref|ZP_06190291.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270043895|gb|EFA16987.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 115
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R I ++L + I ++ + + L+LAG + +G+ + P
Sbjct: 18 DPTRRAILRALADGEHSIGELAAPLQMSFAGASKHIKALELAGLVQRTVQGRNHICRLEP 77
Query: 93 SP 94
P
Sbjct: 78 GP 79
>gi|228475799|ref|ZP_04060516.1| transcription repressor of fructose operon [Staphylococcus
hominis SK119]
gi|314936998|ref|ZP_07844345.1| lactose phosphotransferase system repressor [Staphylococcus
hominis subsp. hominis C80]
gi|228270147|gb|EEK11599.1| transcription repressor of fructose operon [Staphylococcus
hominis SK119]
gi|313655617|gb|EFS19362.1| lactose phosphotransferase system repressor [Staphylococcus
hominis subsp. hominis C80]
Length = 251
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ + ++I TG A + L +L GRL G
Sbjct: 20 LSLQELIERTGCSASTIRRDLSKLQQLGRLQRVHGG 55
>gi|218674662|ref|ZP_03524331.1| denitrification transcriptional regulator protein [Rhizobium etli
GR56]
Length = 233
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
PI DI TG V +L + G + G+ LT+ P
Sbjct: 179 PISRQDIAEMTGTTLHTVSRILSAWEAKGLVE---GGRQKLTVTDPQ 222
>gi|116670541|ref|YP_831474.1| IclR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116610650|gb|ABK03374.1| transcriptional regulator, IclR family [Arthrobacter sp. FB24]
Length = 264
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 30 EYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
E + ++ L + + + DI +G+ + ++ EL G L P G+
Sbjct: 7 EPGRTVTSKVLSILEAFEKSRGALSLTDIAEKSGLPLSTAHRLVTELTDWGLLSREPNGR 66
Query: 85 VSL 87
L
Sbjct: 67 YQL 69
>gi|221633577|ref|YP_002522803.1| putative smf protein [Thermomicrobium roseum DSM 5159]
gi|221155496|gb|ACM04623.1| probable smf protein [Thermomicrobium roseum DSM 5159]
Length = 367
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 26 THYPEYTQCERVR-IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
ER R + +L P HID++ G+ + +LLEL L G + H
Sbjct: 294 PLPAAPAVPERARPVVAALGPEPKHIDELAAELGMGIAQLSALLLELQLEGIVTHLGAQH 353
Query: 85 VSLT 88
+L
Sbjct: 354 YALA 357
>gi|167758956|ref|ZP_02431083.1| hypothetical protein CLOSCI_01302 [Clostridium scindens ATCC
35704]
gi|167663363|gb|EDS07493.1| hypothetical protein CLOSCI_01302 [Clostridium scindens ATCC
35704]
Length = 249
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ RI + +H+D++ + + L++L R+ G ++
Sbjct: 7 QSRIVDVIRKKGSVHVDELAKELSVSPMTIRRDLVKLQQDDRIERCHGGAMA 58
>gi|119386022|ref|YP_917077.1| filamentation induced by cAMP protein Fic [Paracoccus denitrificans
PD1222]
gi|119376617|gb|ABL71381.1| filamentation induced by cAMP protein Fic [Paracoccus denitrificans
PD1222]
Length = 393
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 38 RIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE---GKV 85
RI P + + ++ TG+ AP V L +L+ G + G+V
Sbjct: 321 RIHDLFQQNPFLTSNQLVQKTGLSAPTVNAALADLEKMGIVEEVTGRKRGRV 372
>gi|330830321|ref|YP_004393273.1| putative HTH-type transcriptional regulator YciT [Aeromonas
veronii B565]
gi|328805457|gb|AEB50656.1| Putative HTH-type transcriptional regulator YciT [Aeromonas
veronii B565]
Length = 248
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+ + ++ HTG+ V L L+ G L ++L P
Sbjct: 18 MSVSELSRHTGVSEVTVRNDLTALEKQGLLRRVHGSAMALETDDP 62
>gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces
sp. SA3_actG]
gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces
sp. SA3_actF]
Length = 222
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
M+HP + N + + + L + D I G+
Sbjct: 124 MLHPAAARRLIDRYHHANGPRATHAQARTAPLTPRERDVLALLAEGETNAD-IARRLGMR 182
Query: 61 APV----VYLVLLELDLAGRLCH 79
V +L L++ R+
Sbjct: 183 ESTVKAHVSRILTALEVTNRVQA 205
>gi|283833159|ref|ZP_06352900.1| transcriptional regulator, DeoR family [Citrobacter youngae ATCC
29220]
gi|291070788|gb|EFE08897.1| transcriptional regulator, DeoR family [Citrobacter youngae ATCC
29220]
Length = 253
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L + ++ ++ T + L++LD G + G V+L +PS
Sbjct: 8 EQIMDYLKGHNLATVEQLVAVTDASPATIRRDLIKLDQEGVISRTHGG-VTLNRFIPS 64
>gi|302528393|ref|ZP_07280735.1| hypothetical protein SSMG_04775 [Streptomyces sp. AA4]
gi|302437288|gb|EFL09104.1| hypothetical protein SSMG_04775 [Streptomyces sp. AA4]
Length = 142
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
D+ G++ V L EL+ AG + P
Sbjct: 57 DLAQEYGLDPSTVSRQLAELENAGLVVRGP 86
>gi|295111023|emb|CBL27773.1| DNA protecting protein DprA [Synergistetes bacterium SGP1]
Length = 363
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + L +D+++ +G++ + ++ L +G
Sbjct: 295 DEPAARPQPPLSTDEKVVLALLQRQGGRTMDELLAESGLDLVTLQTCMMTLSASGLAVVS 354
Query: 81 PEGKVS 86
G+ S
Sbjct: 355 GPGRFS 360
>gi|302554944|ref|ZP_07307286.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302472562|gb|EFL35655.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 119
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
Q E RI L P+ + ++ + VV ++L +L AGR+ P
Sbjct: 38 DPQPVAAVRCQPEHTRIL-RLCAEPVAVAELAARLDLPVSVVVILLCDLLEAGRITVRPP 96
Query: 83 GKVSLTM 89
VS T
Sbjct: 97 RLVSRTT 103
>gi|261368287|ref|ZP_05981170.1| transcriptional regulator, AsnC family [Subdoligranulum variabile
DSM 15176]
gi|282569657|gb|EFB75192.1| transcriptional regulator, AsnC family [Subdoligranulum variabile
DSM 15176]
Length = 143
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 32 TQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
+I Q L + + DI + +P V + L+ G + G + H
Sbjct: 1 MDDLDHKILQLLAENARMPVKDIAQRVSLTSPAVSSRIHRLEQEGII----GGYTVVLRH 56
Query: 91 LPSP 94
+P
Sbjct: 57 PGAP 60
>gi|312878853|ref|ZP_07738653.1| transcriptional regulator, MarR family [Aminomonas paucivorans
DSM 12260]
gi|310782144|gb|EFQ22542.1| transcriptional regulator, MarR family [Aminomonas paucivorans
DSM 12260]
Length = 143
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPE--GKVSLTMHLP 92
++ ++ V L L+ G + P G+ P
Sbjct: 53 ELAQRLALDPASVTRSLKRLEEQGWVERCPGEDGRQRRVSLTP 95
>gi|209884551|ref|YP_002288408.1| transcriptional regulator, ArsR family [Oligotropha
carboxidovorans OM5]
gi|209872747|gb|ACI92543.1| transcriptional regulator, ArsR family [Oligotropha
carboxidovorans OM5]
Length = 126
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L ++D+ + P V L L+ AG +
Sbjct: 12 ADPTRRAILARLALGETSVNDLAAPFDMSLPAVSKHLKVLEGAGLITR 59
>gi|111019357|ref|YP_702329.1| xylose repressor [Rhodococcus jostii RHA1]
gi|110818887|gb|ABG94171.1| possible xylose repressor [Rhodococcus jostii RHA1]
gi|194277402|gb|ACF39355.1| hypothetical protein [Rhodococcus sp. DK17]
Length = 392
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R+ ++L + +I TG+ V ++ EL AG + P G
Sbjct: 20 SANQHRVVRALQTSGELTQAEIARRTGLAPATVSNMVKELTAAGMVA-VPGG 70
>gi|254511042|ref|ZP_05123109.1| transcriptional regulator, DeoR family [Rhodobacteraceae
bacterium KLH11]
gi|221534753|gb|EEE37741.1| transcriptional regulator, DeoR family [Rhodobacteraceae
bacterium KLH11]
Length = 266
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ ++++ + + + L EL AG+L G V +
Sbjct: 22 VTVEELANRFAVTVQTIRRDLTELSEAGKLDRVHGGAVLRS 62
>gi|218702180|ref|YP_002409809.1| hypothetical protein ECIAI39_3916 [Escherichia coli IAI39]
gi|218372166|emb|CAR20028.1| conserved hypothetical protein; putative DNA processing protein
[Escherichia coli IAI39]
Length = 431
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|190573797|ref|YP_001971642.1| putative ArsR family transcriptional regulator [Stenotrophomonas
maltophilia K279a]
gi|190011719|emb|CAQ45338.1| putative ArsR family transcriptional regulator [Stenotrophomonas
maltophilia K279a]
Length = 119
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 20/55 (36%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R I +L P + + + P + L L+ +G + +G+V
Sbjct: 16 ADPTRCAIVAALGQGPRTVSTLAEPFEMALPSLMKHLAVLERSGVVRSRKQGRVR 70
>gi|171911829|ref|ZP_02927299.1| Rnr [Verrucomicrobium spinosum DSM 4136]
Length = 941
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 36 RVRIKQSLN---NVPIHIDDIIHHTGIEAP---VVYLVLLELDLAGRLCHHPEGKVSLTM 89
I + L VP ++ ++ + L EL+ GR+ + L
Sbjct: 2 ESDILELLGRSEYVPANVPGLLAALDWAPNRQQELQAFLQELETRGRVVRTKGNRYILAD 61
Query: 90 HLP 92
Sbjct: 62 EAD 64
>gi|293394514|ref|ZP_06638810.1| DeoR family transcriptional regulator [Serratia odorifera DSM
4582]
gi|291422979|gb|EFE96212.1| DeoR family transcriptional regulator [Serratia odorifera DSM
4582]
Length = 252
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L + + ++ ++H + L++LD G + G V+L +P+
Sbjct: 8 DQILDYLKGHNLVTVEQLVHAIDASPATIRRDLIKLDEQGIINRSHGG-VALNRFIPA 64
>gi|329947873|ref|ZP_08294805.1| putative DNA protecting protein DprA [Actinomyces sp. oral taxon
170 str. F0386]
gi|328523497|gb|EGF50595.1| putative DNA protecting protein DprA [Actinomyces sp. oral taxon
170 str. F0386]
Length = 468
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 32 TQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ ++ + I+ +G+ L L+L G++ G
Sbjct: 411 LDPAGAVVLDAMPARASATTEAIVRSSGMSLKETTAALGILELTGKVERTASG 463
>gi|300937262|ref|ZP_07152106.1| putative DNA protecting protein DprA [Escherichia coli MS 21-1]
gi|300457664|gb|EFK21157.1| putative DNA protecting protein DprA [Escherichia coli MS 21-1]
Length = 400
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ + H + N P +T + ++ L I I+ + TG+ + +
Sbjct: 320 QPELFSLHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTIEQISVW 379
Query: 68 LLELDLAGRLCHHPEGKV 85
L + GR+ EG
Sbjct: 380 LNRAEEEGRVIRLGEGHY 397
>gi|256832371|ref|YP_003161098.1| putative transcriptional regulator [Jonesia denitrificans DSM
20603]
gi|256685902|gb|ACV08795.1| putative transcriptional regulator [Jonesia denitrificans DSM
20603]
Length = 252
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVY 65
+ + + + R R+ Q + ++ PI+ + G+ A +
Sbjct: 7 RGDTPGPSRSSINNHGTPPMAVAGDEETTRERVLQLIVSDGPINAATLSRMLGLTAAGIR 66
Query: 66 LVLLELDLAGRLCHH 80
L L+ G + H
Sbjct: 67 RHLAHLEDDGMIAVH 81
>gi|302529690|ref|ZP_07282032.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302438585|gb|EFL10401.1| transcriptional regulator [Streptomyces sp. AA4]
Length = 253
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 34 CERVRIKQ--SLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
ER ++ + + + + D+ G+ + L L+ G + G V++
Sbjct: 4 AERHQLLAQRARRDGRVDVGDLAAELGVAPETIRRDLGVLERQGVVRRVYGGAVAVDRLD 63
Query: 92 PSPQ 95
P+
Sbjct: 64 FEPE 67
>gi|197287102|ref|YP_002152974.1| hypothetical protein PMI3289 [Proteus mirabilis HI4320]
gi|194684589|emb|CAR46448.1| conserved hypothetical protein [Proteus mirabilis HI4320]
Length = 386
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 18 NHTKNINITHYPEYTQCERVR----IKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELD 72
N ++ N+ E + + I L I ID I + +G+ + +LLEL+
Sbjct: 311 NKKESSNMPLEIEKLTPTQQQSINLILPLLGFDKAIPIDIIANKSGLSTSDLAPLLLELE 370
Query: 73 LAGRLCHHPEGKVSL 87
L ++ G + L
Sbjct: 371 LIEKVAIVAGGYIRL 385
>gi|319441370|ref|ZP_07990526.1| putative DNA processing protein [Corynebacterium variabile DSM
44702]
Length = 424
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEY---TQCERVRIKQSLN---NVPIHIDDIIHHTGIEA 61
+ + + +++ +++ + + + H+D I G+
Sbjct: 337 REIIEPIGSVDPDQQLDLQFAASPVQLLSRDQLAVFDACGIATDDTGHLDQIAAEIGLPM 396
Query: 62 PVVYLVLLELDLAGRLCH 79
V + EL+ G +
Sbjct: 397 AAVVRTVGELEGTGLVVR 414
>gi|167621970|ref|YP_001672264.1| DNA protecting protein DprA [Shewanella halifaxensis HAW-EB4]
gi|167351992|gb|ABZ74605.1| DNA protecting protein DprA [Shewanella halifaxensis HAW-EB4]
Length = 339
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ S+ I+D++ H+G +V LLEL+L G + P G + L
Sbjct: 288 LLASVGYETTTINDVVEHSGKTIELVLEQLLELELQGWITAVPGGYIRL 336
>gi|116670352|ref|YP_831285.1| IclR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116610461|gb|ABK03185.1| transcriptional regulator, IclR family [Arthrobacter sp. FB24]
Length = 271
Score = 34.8 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++++ TG A +Y +L L++ G + P +
Sbjct: 30 LSVNELAERTGEPASSLYRLLSTLEMIGWVE--PGSR 64
>gi|302547914|ref|ZP_07300256.1| putative DeoR-family transcriptional regulator [Streptomyces
hygroscopicus ATCC 53653]
gi|302465532|gb|EFL28625.1| putative DeoR-family transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length = 199
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
I ++L + P + D+ + A + LL+L+ G L G V P
Sbjct: 14 HQMILRALRSGGPAAVADLSAQLNVSAATIRRDLLKLEEDGLLTRVHGGAVVEGGDQP 71
>gi|297204514|ref|ZP_06921911.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
gi|297148719|gb|EDY54606.2| transcriptional regulator [Streptomyces sviceus ATCC 29083]
Length = 395
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + L P + TG+ P V L L+ AG +
Sbjct: 22 STNERLLLERLRAEGPASRAQLARGTGLSKPTVSSALAALESAGLVR 68
>gi|296166410|ref|ZP_06848842.1| ArsR family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295898171|gb|EFG77745.1| ArsR family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 119
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ H G AP V L +L +A +
Sbjct: 17 ADATRVQVLWSLTDRELSVNELAEHVGKPAPSVSQHLAKLRMARLVR 63
>gi|170691569|ref|ZP_02882734.1| transcriptional regulator, DeoR family [Burkholderia graminis
C4D1M]
gi|170143774|gb|EDT11937.1| transcriptional regulator, DeoR family [Burkholderia graminis
C4D1M]
Length = 256
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G + P
Sbjct: 7 HQRIRALLSTLHRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAIKPADEAP 64
>gi|86738861|ref|YP_479261.1| cell divisionFtsK/SpoIIIE [Frankia sp. CcI3]
gi|86565723|gb|ABD09532.1| cell divisionFtsK/SpoIIIE [Frankia sp. CcI3]
Length = 558
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP--IHIDDIIHHTGIEAPVVYLVL 68
+ + + + H P+ + +L P + D++ TG VY L
Sbjct: 479 PTPPALPARSDGPHTDHNPDPNSA----LWTALTATPDGASVPDLVTATGRPRRWVYYAL 534
Query: 69 LELDLAGRLCHHPEGKVSLTMHLP 92
+L AG++ G+ T H P
Sbjct: 535 QQLQEAGKVRQAAPGRWHATPHRP 558
>gi|121599263|ref|YP_992237.1| PadR family transcriptional regulator [Burkholderia mallei SAVP1]
gi|167000866|ref|ZP_02266671.1| transcriptional regulator, PadR family [Burkholderia mallei
PRL-20]
gi|121228073|gb|ABM50591.1| transcriptional regulator, PadR family [Burkholderia mallei
SAVP1]
gi|243063293|gb|EES45479.1| transcriptional regulator, PadR family [Burkholderia mallei
PRL-20]
Length = 154
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 32 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 73
>gi|124384844|ref|YP_001028682.1| PadR family transcriptional regulator [Burkholderia mallei NCTC
10229]
gi|124292864|gb|ABN02133.1| transcriptional regulator, PadR family [Burkholderia mallei NCTC
10229]
Length = 154
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 32 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 73
>gi|300710653|ref|YP_003736467.1| conditioned medium-induced protein 2 [Halalkalicoccus jeotgali
B3]
gi|299124336|gb|ADJ14675.1| conditioned medium-induced protein 2 [Halalkalicoccus jeotgali
B3]
Length = 217
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI + L+ P ++ +I + G+ V L +L+ AG +
Sbjct: 15 RRRILRLLSQKPCYVTEISEYLGVSPKAVIDHLRKLEEAGLVES 58
>gi|290957087|ref|YP_003488269.1| DNA mediated transformation protein [Streptomyces scabiei 87.22]
gi|260646613|emb|CBG69710.1| putative DNA mediated transformation protein [Streptomyces scabiei
87.22]
Length = 390
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGI 59
+V E + + ++ +L P D+I G
Sbjct: 289 LVSDAAEVVELVGDMGELAPDRRGPVLPRDLLEPGARQVLAALPGRGPAAADEIAREAGT 348
Query: 60 EAPVVYLVLLELDLAGRLCHHPEG 83
L EL G + H +G
Sbjct: 349 ALDDAVGRLYELRALGYVERHGDG 372
>gi|330818532|ref|YP_004362237.1| transcriptional regulator, IclR family [Burkholderia gladioli
BSR3]
gi|327370925|gb|AEA62281.1| transcriptional regulator, IclR family [Burkholderia gladioli
BSR3]
Length = 259
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 38 RIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
I ++ + + ++ T + + +L L+ G + P+G+ ++ P+P
Sbjct: 27 AIFEAFGPGDDRLTLAELSRRTALYKSTILRLLAALEHGGFIRRLPDGQYAIG---PAP 82
>gi|315443510|ref|YP_004076389.1| transcriptional regulator [Mycobacterium sp. Spyr1]
gi|315261813|gb|ADT98554.1| transcriptional regulator [Mycobacterium sp. Spyr1]
Length = 158
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
++N ++ + + L+N P + ++ I V L L L+ G +
Sbjct: 29 SVNEAVSEHGVSTAQIGVLRQLSNEPGLSGAELARRLLISPQGVQLALTALERRGLVER 87
>gi|311106115|ref|YP_003978968.1| transcriptional regulator family protein 17 [Achromobacter
xylosoxidans A8]
gi|310760804|gb|ADP16253.1| bacterial transcriptional regulator family protein 17
[Achromobacter xylosoxidans A8]
Length = 242
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+ + ++ T + V +L L+ AG + +G+ +L
Sbjct: 40 LSLGELAERTRLYKSTVLRLLASLEHAGWIQRLDDGRYAL 79
>gi|293603668|ref|ZP_06686088.1| IclR family transcriptional regulator [Achromobacter piechaudii
ATCC 43553]
gi|292817936|gb|EFF76997.1| IclR family transcriptional regulator [Achromobacter piechaudii
ATCC 43553]
Length = 304
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERV--RIKQSLNN--VPIHIDDIIHHTG 58
P ++ + + +P Q R+ +L P+ + ++ TG
Sbjct: 13 EPISPMPRLTTPRTPLDAETEGASGHPIAIQVIERAMRLLDALAAQQDPVTLKELSATTG 72
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ A + +L +L + + G L M L
Sbjct: 73 LHASTAHRILNDLVVGRYVERVDNGLYQLGMRL 105
>gi|186474065|ref|YP_001861407.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184196397|gb|ACC74361.1| DEAD/H associated domain protein [Burkholderia phymatum STM815]
Length = 1497
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
P+ + I + A V L L+ G +
Sbjct: 1042 GFGPLTLPSIARALALPASAVAQALTRLEAQGYVMR 1077
>gi|260428803|ref|ZP_05782780.1| glycerol-3-phosphate regulon repressor [Citreicella sp. SE45]
gi|260419426|gb|EEX12679.1| glycerol-3-phosphate regulon repressor [Citreicella sp. SE45]
Length = 260
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ + H G+ + L EL AGRL G V
Sbjct: 20 VTVEGLAQHFGVTLQTIRRDLTELADAGRLERVHGGAV 57
>gi|330508644|ref|YP_004385072.1| hypothetical protein MCON_2890 [Methanosaeta concilii GP-6]
gi|328929452|gb|AEB69254.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
Length = 210
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI Q L+ P + +++ + V L L+ AG +
Sbjct: 16 RRRILQLLSFRPFYFNEMAKRLDVGPKAVIDHLEMLERAGLVEC 59
>gi|326333239|ref|ZP_08199486.1| transcriptional regulator, IclR family [Nocardioidaceae bacterium
Broad-1]
gi|325948883|gb|EGD40976.1| transcriptional regulator, IclR family [Nocardioidaceae bacterium
Broad-1]
Length = 270
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQS-LNNVP-IHIDDIIHHTGIEAPVVYLV 67
+ S +H T + + ++I ++ L P + + +I G+ + +
Sbjct: 6 IPTLASQHDHEGAPRTTSSATPSATKALQILEAFLGAGPKLGVSEIARTAGLPKSTAFRL 65
Query: 68 LLELDLAGRLCH 79
L L+ +G +
Sbjct: 66 LRHLEQSGYVER 77
>gi|295704796|ref|YP_003597871.1| putative marR-family transcriptional regulator [Bacillus
megaterium DSM 319]
gi|294802455|gb|ADF39521.1| Putative marR-family transcriptional regulator [Bacillus
megaterium DSM 319]
Length = 145
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 25 ITHYPEYTQCERVR--IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
TH P+ +R + L+ P+ I+ + + + + L+ + P
Sbjct: 21 TTHSPKLGSLDRSEYLLLSELDQRSPLGINALAENLKLSLSTASRQVSALETKQFVRRFP 80
Query: 82 ---EGKVSL 87
G++SL
Sbjct: 81 SPENGRISL 89
>gi|294053679|ref|YP_003547337.1| ATP-dependent DNA helicase, RecQ family [Coraliomargarita
akajimensis DSM 45221]
gi|293613012|gb|ADE53167.1| ATP-dependent DNA helicase, RecQ family [Coraliomargarita
akajimensis DSM 45221]
Length = 638
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP---IHIDDIIHHTGIEAPVVY 65
F+ D +N P+ + R + + L + I I+D+ I VV
Sbjct: 333 ELFACADDCTTLENFVFGDTPDP-ESIRSIVTELLGSGDEIDIAINDLSRRHDIRQLVVN 391
Query: 66 LVLLELDLAGRLCHHPEGKVSLTMHLP 92
+L L+L G + P
Sbjct: 392 TLLTRLELKGIIRSE-GHYYGSIRFAP 417
>gi|227487081|ref|ZP_03917397.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227093155|gb|EEI28467.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 694
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 8/82 (9%), Positives = 22/82 (26%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
+ + ++ + +L++ P+ + + +
Sbjct: 339 TDRADVILLPGPEDRAIWDYFASTAMPSREVVESLLSALSDTPLSTAKLETAVDLSRSRI 398
Query: 65 YLVLLELDLAGRLCHHPEGKVS 86
L L + G + G VS
Sbjct: 399 EQTLKVLAVDGAVERVAGGWVS 420
>gi|221198437|ref|ZP_03571483.1| transcriptional regulator, IclR family [Burkholderia multivorans
CGD2M]
gi|221208886|ref|ZP_03581883.1| transcriptional regulator, IclR family [Burkholderia multivorans
CGD2]
gi|221171169|gb|EEE03619.1| transcriptional regulator, IclR family [Burkholderia multivorans
CGD2]
gi|221182369|gb|EEE14770.1| transcriptional regulator, IclR family [Burkholderia multivorans
CGD2M]
Length = 314
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL---------NNVPIHIDDIIHHTG 58
++ S T + + P +++ + + ++ P+ + ++ T
Sbjct: 28 RDTIGSTPLAASTDSPADMNQPTPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTE 87
Query: 59 IEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ + +L ++ + G L M L
Sbjct: 88 LHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRL 120
>gi|94986555|ref|YP_594488.1| DNA uptake Rossmann fold nucleotide-binding protein [Lawsonia
intracellularis PHE/MN1-00]
gi|94730804|emb|CAJ54166.1| predicted Rossmann fold nucleotide-binding protein involved in DNA
uptake [Lawsonia intracellularis PHE/MN1-00]
Length = 421
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+I + P ID + + A +
Sbjct: 369 ERQIIDIIRLEPKDIDQLCQLLQLPAEEISP 399
>gi|13473239|ref|NP_104806.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
gi|14023987|dbj|BAB50592.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
Length = 111
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R ++ L+ P + + + V L L+ +G + G+V
Sbjct: 16 ADPARRQMVDRLSRGPASVSQLAEPLAMSLSAVVQHLNLLEASGLVRTQKVGRVR 70
>gi|116669184|ref|YP_830117.1| regulatory protein, ArsR [Arthrobacter sp. FB24]
gi|116609293|gb|ABK02017.1| transcriptional regulator, ArsR family [Arthrobacter sp. FB24]
Length = 210
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ R RI + L P + G+ V L L+ G +
Sbjct: 8 EDAAAAEASLDPIRTRILREL-AEPGSATQLAAKVGLPRQKVNYHLKALERHGLVE 62
>gi|13473072|ref|NP_104639.1| transcription regulator [Mesorhizobium loti MAFF303099]
gi|14023820|dbj|BAB50425.1| probable transcription regulator [Mesorhizobium loti MAFF303099]
Length = 122
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ R +I + L+ P + + G+ V L L+ G + G+V
Sbjct: 16 EPTRRQILERLSRGPATVSQLAEPFGMTFAAVLQHLQVLEACGLIRSEKIGRVR 69
>gi|323720751|gb|EGB29823.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
Length = 113
Score = 34.8 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ G AP V L +L +A +
Sbjct: 9 ADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVR 55
>gi|226357806|ref|YP_002787546.1| transcriptional regulator, ROK family [Deinococcus deserti
VCD115]
gi|226320049|gb|ACO48042.1| putative transcriptional regulator, ROK family [Deinococcus
deserti VCD115]
Length = 401
Score = 34.8 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 34 CERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R + L N + D+++ TGI P + VL L G +
Sbjct: 13 ASRNAVLNVLKNTKEVTTDELVRRTGISQPTILKVLSALQHEGLIER 59
>gi|134103728|ref|YP_001109389.1| ArsR family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291007746|ref|ZP_06565719.1| ArsR family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133916351|emb|CAM06464.1| transcriptional regulator, ArsR family [Saccharopolyspora
erythraea NRRL 2338]
Length = 113
Score = 34.8 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
R I L+ + D+ I AP V L L+ AG +
Sbjct: 15 ADPTRRAILTRLSRGATTVGDLATPFAISAPAVSQHLKVLERAGLVERTA 64
>gi|110643676|ref|YP_671406.1| putative DNA processing protein [Escherichia coli 536]
gi|110345268|gb|ABG71505.1| putative DNA processing protein [Escherichia coli 536]
Length = 431
Score = 34.8 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|191171501|ref|ZP_03033049.1| putative DNA protecting protein DprA [Escherichia coli F11]
gi|300987331|ref|ZP_07178139.1| putative DNA protecting protein DprA [Escherichia coli MS 200-1]
gi|190908128|gb|EDV67719.1| putative DNA protecting protein DprA [Escherichia coli F11]
gi|300306199|gb|EFJ60719.1| putative DNA protecting protein DprA [Escherichia coli MS 200-1]
gi|324014530|gb|EGB83749.1| putative DNA protecting protein DprA [Escherichia coli MS 60-1]
Length = 400
Score = 34.8 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|301018477|ref|ZP_07182896.1| putative DNA protecting protein DprA [Escherichia coli MS 69-1]
gi|300399700|gb|EFJ83238.1| putative DNA protecting protein DprA [Escherichia coli MS 69-1]
Length = 400
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|171913283|ref|ZP_02928753.1| regulatory protein ArsR [Verrucomicrobium spinosum DSM 4136]
Length = 126
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
R + + L P+ + D+ V +L L+ AG + +G+
Sbjct: 18 PTRRGMLELLAREPVRVTDLAAQFDCSLNVASKHILNLERAGLVRREQKGR 68
>gi|254247908|ref|ZP_04941229.1| Response regulator [Burkholderia cenocepacia PC184]
gi|124872684|gb|EAY64400.1| Response regulator [Burkholderia cenocepacia PC184]
Length = 420
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 19/95 (20%), Gaps = 1/95 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGI 59
++ P + L + + G
Sbjct: 311 VLRPLANVVATPRGFALEPLGVRETVVLARPVDDRHAAVLALLADGEAWSSSALALALGA 370
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
V L L G++ G+ M P P
Sbjct: 371 SQRTVQRALDALAETGKVQALGRGRARRWMTPPLP 405
>gi|78063643|ref|YP_373551.1| DeoR family transcriptional regulator [Burkholderia sp. 383]
gi|77971528|gb|ABB12907.1| transcriptional regulator, DeoR family [Burkholderia sp. 383]
Length = 255
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+ D I+ + V L++L+ G L G V + P
Sbjct: 20 VSTDRIMADLNVSRETVRRDLVDLEALGELKRVHGGAVQVGDEAP 64
>gi|307555529|gb|ADN48304.1| putative DNA processing protein [Escherichia coli ABU 83972]
Length = 401
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 320 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 374
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 375 EQISVWLNRAEEEGRVIRLGEGHY 398
>gi|209516823|ref|ZP_03265674.1| transcriptional regulator, ArsR family [Burkholderia sp. H160]
gi|209502786|gb|EEA02791.1| transcriptional regulator, ArsR family [Burkholderia sp. H160]
Length = 111
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
+ + R ++ L + ++D+ H + V L L+ A
Sbjct: 2 AERPDDTDLLFKALADPSRRKLLDVLHAHDGQTLNDLCEHLEMTRQGVTQHLGLLEAANL 61
Query: 77 LCHHPEGKVSLTMHLPSP 94
+ G+ L P P
Sbjct: 62 VVTVRSGREKLHFLNPVP 79
>gi|26250046|ref|NP_756086.1| putative DNA processing protein [Escherichia coli CFT073]
gi|26110475|gb|AAN82660.1|AE016768_78 Putative DNA processing protein [Escherichia coli CFT073]
Length = 431
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|313125553|ref|YP_004035817.1| transcriptional regulator [Halogeometricum borinquense DSM 11551]
gi|312291918|gb|ADQ66378.1| predicted transcriptional regulator [Halogeometricum borinquense
DSM 11551]
Length = 286
Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
RVR+ + L++ D++ T + + +L +L+ G +
Sbjct: 30 SEHRVRVLELLSDGSRTRDELKVGTSVTRVTLSRILRDLEERGWVRR 76
>gi|89902328|ref|YP_524799.1| DeoR family transcriptional regulator [Rhodoferax ferrireducens
T118]
gi|89347065|gb|ABD71268.1| transcriptional regulator, DeoR family [Rhodoferax ferrireducens
T118]
Length = 264
Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ +L + + H G+ + L++L+ GRL G V + H P
Sbjct: 9 HEDLVVALQAGVRGSESLSRHLGVSLVTLRRDLIQLEAEGRLVRTFGGAVPVGGHEPE 66
>gi|331649240|ref|ZP_08350326.1| putative DNA processing protein [Escherichia coli M605]
gi|331041738|gb|EGI13882.1| putative DNA processing protein [Escherichia coli M605]
Length = 431
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|227883578|ref|ZP_04001383.1| SMF family Rossmann fold nucleotide-binding protein [Escherichia
coli 83972]
gi|300985276|ref|ZP_07177373.1| putative DNA protecting protein DprA [Escherichia coli MS 45-1]
gi|301050343|ref|ZP_07197232.1| putative DNA protecting protein DprA [Escherichia coli MS 185-1]
gi|227839457|gb|EEJ49923.1| SMF family Rossmann fold nucleotide-binding protein [Escherichia
coli 83972]
gi|281180466|dbj|BAI56796.1| putative DNA processing chain [Escherichia coli SE15]
gi|300297972|gb|EFJ54357.1| putative DNA protecting protein DprA [Escherichia coli MS 185-1]
gi|300408147|gb|EFJ91685.1| putative DNA protecting protein DprA [Escherichia coli MS 45-1]
gi|315291714|gb|EFU51070.1| putative DNA protecting protein DprA [Escherichia coli MS 153-1]
Length = 400
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPAHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|226361494|ref|YP_002779272.1| NagC family transcriptional regulator [Rhodococcus opacus B4]
gi|226239979|dbj|BAH50327.1| putative NagC family transcriptional regulator [Rhodococcus
opacus B4]
Length = 392
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ R+ ++L + +I TG+ V ++ EL AG + P G
Sbjct: 20 SANQHRVVRALQTSGELTQAEIARRTGLAPATVSNMVKELTAAGMVA-VPGG 70
>gi|218297085|ref|ZP_03497756.1| transcriptional regulator, ArsR family [Thermus aquaticus Y51MC23]
gi|218242499|gb|EED09037.1| transcriptional regulator, ArsR family [Thermus aquaticus Y51MC23]
Length = 232
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPE----------YTQCERVRIKQSLNNVPIHIDDII 54
+ + + + + +N P R+ Q+L P +
Sbjct: 135 HAPKVAPAPREEALPHRVLNGESGPAGEAVGEVGGLELDDRDQRLFQALRTGPKGPSVLA 194
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
G+ V L L+ G + +G L +
Sbjct: 195 RELGVSPSTVLYRLKRLEGLGLVEK-ADGVYRLKETPSA 232
>gi|317122824|ref|YP_004102827.1| DeoR family transcriptional regulator [Thermaerobacter
marianensis DSM 12885]
gi|315592804|gb|ADU52100.1| transcriptional regulator, DeoR family [Thermaerobacter
marianensis DSM 12885]
Length = 258
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R ++ Q L + + ++ + V L L+ G L G + + + P
Sbjct: 7 RRQVLQWLEEEGRVQVTEVARRLAVSPMTVRRDLERLEADGLLVRTHGGALPVGVTTP 64
>gi|304389804|ref|ZP_07371763.1| DNA protecting protein DprA [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304326980|gb|EFL94219.1| DNA protecting protein DprA [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 462
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLE 70
S+ + T I + V++ L+ ++ + G+ V L
Sbjct: 380 SASPQRDSTGQIPAPSLFAGLSSDGVKVIDVLSKTAWKSLEQVSRAAGLGTRTVQSELGL 439
Query: 71 LDLAGRLCHHPEGKVSL 87
++L G++ + L
Sbjct: 440 MELDGKVETRKG-RYRL 455
>gi|239928498|ref|ZP_04685451.1| two-component transcriptional regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291436823|ref|ZP_06576213.1| two-component transcriptional regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291339718|gb|EFE66674.1| two-component transcriptional regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 226
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q E + + H P + R + + + P+ +I TG+
Sbjct: 134 QAEVDRIFGTLSAPAEPRLPKGHSPTTAELVRQALLHA--DGPLSAQEIAERTGVSRQTA 191
Query: 65 YLVLLELDLAGRLC 78
L L+ GR
Sbjct: 192 QRYLKLLERTGRAT 205
>gi|260574176|ref|ZP_05842181.1| putative transcriptional regulator, AsnC family [Rhodobacter sp.
SW2]
gi|259023642|gb|EEW26933.1| putative transcriptional regulator, AsnC family [Rhodobacter sp.
SW2]
Length = 162
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 10/67 (14%)
Query: 31 YTQCERVRIKQS------LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH--HPE 82
RI + L P ++ G+ V L + AG +
Sbjct: 2 SIDATDRRIISATQGGLPLAPEPYA--EVARWLGLTEAEVLARLTAMQAAGVIRRIALAP 59
Query: 83 GKVSLTM 89
+L +
Sbjct: 60 NHYALGL 66
>gi|315657109|ref|ZP_07909993.1| DNA protecting protein DprA [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492212|gb|EFU81819.1| DNA protecting protein DprA [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 462
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLE 70
S+ + T I + V++ L+ ++ + G+ V L
Sbjct: 380 SASPQRDSTGQIPAPSLFAGLSSDGVKVIDVLSKTAWKSLEQVSRAAGLGTRTVQSELGL 439
Query: 71 LDLAGRLCHHPEGKVSL 87
++L G++ + L
Sbjct: 440 MELDGKVETRKG-RYRL 455
>gi|256832232|ref|YP_003160959.1| DNA protecting protein DprA [Jonesia denitrificans DSM 20603]
gi|256685763|gb|ACV08656.1| DNA protecting protein DprA [Jonesia denitrificans DSM 20603]
Length = 395
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
H ++ + + + +L+ IDD++ +G+ V +L L+L +
Sbjct: 317 HRQDDLFSRESDSLHEGERLVYDALSPFRARFIDDLVAASGLSHLEVREILGILELKQLV 376
Query: 78 CHHPEGKVSLT 88
+G +
Sbjct: 377 ICEQQGYRRVA 387
>gi|55377447|ref|YP_135297.1| DNA-binding protein [Haloarcula marismortui ATCC 43049]
gi|55230172|gb|AAV45591.1| putative DNA binding [Haloarcula marismortui ATCC 43049]
Length = 92
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R R+ ++L + P + + + + V L L+ G +
Sbjct: 16 PNRARVLRALADQPRNANQLADDLDLAYNTVRYHLDVLEDNGVITS 61
>gi|320532243|ref|ZP_08033106.1| DeoR-like helix-turn-helix protein [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135545|gb|EFW27630.1| DeoR-like helix-turn-helix protein [Actinomyces sp. oral taxon
171 str. F0337]
Length = 258
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 36 RVRIKQS-LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
I ++ +HIDDII G+ A L L + G ++ P
Sbjct: 7 HSAILDIVMDEGSVHIDDIITRLGVSAATARRDLDHLADQQLISRTRGGAIANPTSTEPP 66
>gi|284045538|ref|YP_003395878.1| GntR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283949759|gb|ADB52503.1| transcriptional regulator, GntR family [Conexibacter woesei DSM
14684]
Length = 236
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 51 DDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
D + G+ V L++L+ G + HP
Sbjct: 52 DQLAEQLGVSRIPVRSALMQLETEGLIKVHP 82
>gi|227327952|ref|ZP_03831976.1| DeoR family transcriptional regulator [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 271
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 27 DQIMDYLKSHNLVTVDELVSVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 83
>gi|170683496|ref|YP_001745683.1| putative DNA protecting protein DprA [Escherichia coli SMS-3-5]
gi|170521214|gb|ACB19392.1| putative DNA protecting protein DprA [Escherichia coli SMS-3-5]
Length = 400
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P +T + ++ L I I+ + TG+
Sbjct: 319 AQPELFS-----LHEDDANYAVMPSHTPVDFYQLFVAELAILAKESISIERLASCTGLTI 373
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 374 EQISVWLNRAEEEGRVIRLGEGHY 397
>gi|86361256|ref|YP_473143.1| denitrification transcriptional regulator protein [Rhizobium etli
CFN 42]
gi|86285358|gb|ABC94416.1| denitrification transcriptional regulator protein, CRP family
[Rhizobium etli CFN 42]
Length = 224
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 47 PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
PI DI TG V +L + G + G+ LT+ P
Sbjct: 170 PISRQDIAEMTGTTLHTVSRILSAWEAKGMVE---GGRQKLTVTDPQ 213
>gi|307316621|ref|ZP_07596064.1| transcriptional regulator, IclR family [Sinorhizobium meliloti
AK83]
gi|306897819|gb|EFN28562.1| transcriptional regulator, IclR family [Sinorhizobium meliloti
AK83]
Length = 261
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
P+ + DI G + L+ L AG + P+G+ LT+
Sbjct: 45 PEPLRLVDIARQLGEARGAAHQRLVTLVEAGWIEQTPDGRYRLTLR 90
>gi|323524607|ref|YP_004226760.1| DeoR family transcriptional regulator [Burkholderia sp. CCGE1001]
gi|323381609|gb|ADX53700.1| transcriptional regulator, DeoR family [Burkholderia sp.
CCGE1001]
Length = 256
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 36 RVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
RI+ L+ + + I+ G+ V LL+L+ G L G + P
Sbjct: 7 HQRIRALLSTLHRVSTERIMADLGVSRETVRRDLLDLEALGELRRVHGGAIKPADEAP 64
>gi|302382941|ref|YP_003818764.1| DNA protecting protein DprA [Brevundimonas subvibrioides ATCC
15264]
gi|302193569|gb|ADL01141.1| DNA protecting protein DprA [Brevundimonas subvibrioides ATCC
15264]
Length = 360
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 21/70 (30%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
+ + R+ L+ P D+I V LLEL L
Sbjct: 287 TLREPPADPPFLDGGDDVDAAFLDRVAALLSPTPTPRDEIARALNAPIGAVAAALLELSL 346
Query: 74 AGRLCHHPEG 83
AGR P G
Sbjct: 347 AGRATLLPGG 356
>gi|226304017|ref|YP_002763975.1| DeoR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226183132|dbj|BAH31236.1| putative DeoR family transcriptional regulator [Rhodococcus
erythropolis PR4]
Length = 255
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
++D+ G+ A + L +L G + G ++L H S
Sbjct: 24 SVEDLSAQFGVTASTIRRDLSQLTAQGVIARTYGGAIALNPHPES 68
>gi|158423714|ref|YP_001525006.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
gi|158330603|dbj|BAF88088.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
Length = 283
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVV 64
+ S + P+ + I + + + I+ + + V
Sbjct: 5 AAPETEAPSSAAAPIVSGADAASPD-VSGRQQAIVERVREQGYVTIETLARLFDVSTQTV 63
Query: 65 YLVLLELDLAGRLCHHPEG 83
++ LD AG + G
Sbjct: 64 RRDIIRLDEAGLIQRFHGG 82
>gi|78486439|ref|YP_392364.1| ArsR family transcriptional regulator [Thiomicrospira crunogena
XCL-2]
gi|78364725|gb|ABB42690.1| transcriptional regulator, ArsR family [Thiomicrospira crunogena
XCL-2]
Length = 189
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
I L+ +D + G+ V L L AG + +G
Sbjct: 2 ILDILSQSECDVDTLHRKLGLSVANVSKHLQNLKQAGLVKSRRDGL 47
>gi|317969286|ref|ZP_07970676.1| transcriptional regulator [Synechococcus sp. CB0205]
Length = 106
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ R+++ L PI + +I TG + L +L AG +
Sbjct: 19 EPARLQLLCHLKQGPIDVAALIEATGFSQSHISRQLGQLQRAGLVRC 65
>gi|300786077|ref|YP_003766368.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei U32]
gi|299795591|gb|ADJ45966.1| ATP-dependent DNA helicase RecQ [Amycolatopsis mediterranei U32]
Length = 540
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ E + ++L P+ + A L L+ G + P+G+ +LT
Sbjct: 354 APPEAELRAVVEALRPGPLGSRQLAEAVPGPAARRTRALGLLERCGDVVTGPDGRCTLT 412
>gi|311742923|ref|ZP_07716731.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
gi|311313603|gb|EFQ83512.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
Length = 696
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 32 TQCERVR-IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
ER + + +L P+ + ++ + L+L LD+ G + G V+
Sbjct: 362 PDPERAQAVIAALGADPLSTPALEARVDLKRTRLELLLKVLDVDGAVQRVSGGWVA 417
>gi|291299650|ref|YP_003510928.1| DeoR family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290568870|gb|ADD41835.1| transcriptional regulator, DeoR family [Stackebrandtia
nassauensis DSM 44728]
Length = 253
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ + + G+ A V L L+ AG + G +
Sbjct: 20 VDVVTLAEALGVTAETVRRDLTVLERAGVVRRVHGGAI 57
>gi|197104070|ref|YP_002129447.1| transcriptional regulator, AsnC family [Phenylobacterium zucineum
HLK1]
gi|196477490|gb|ACG77018.1| transcriptional regulator, AsnC family [Phenylobacterium zucineum
HLK1]
Length = 215
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGR 76
H + E +I + + + + +I G+ + + + L+ AG
Sbjct: 41 AHIRPQKEEKLSEALDAVDAKILDLIQHDAGLSVAEIADRVGLSSSPCWRRIKRLEDAGV 100
Query: 77 LCH 79
+
Sbjct: 101 IQR 103
>gi|330892100|gb|EGH24761.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
mori str. 301020]
Length = 251
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R I + + + ++D++ G+ V L L G + G + P
Sbjct: 7 RQAILELVLSGKSNVDELCAQLGVSEATVRRDLTALAEDGLILRTYGGAAHVGQREPE 64
>gi|326446084|ref|ZP_08220818.1| putative transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|209967539|gb|ACJ02381.1| ArsR family regulator [Streptomyces clavuligerus]
Length = 229
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R RI +L P + G+ V L EL+ G +
Sbjct: 3 EEPAAAEASLDPIRSRILAAL-AEPGSAAMLATRLGLARQKVNYHLKELERHGLVE 57
>gi|254388053|ref|ZP_05003290.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
gi|294817597|ref|ZP_06776239.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064]
gi|197701777|gb|EDY47589.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
gi|294322412|gb|EFG04547.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064]
Length = 234
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
R RI +L P + G+ V L EL+ G +
Sbjct: 8 EEPAAAEASLDPIRSRILAAL-AEPGSAAMLATRLGLARQKVNYHLKELERHGLVE 62
>gi|163850160|ref|YP_001638203.1| regulatory protein ArsR [Methylobacterium extorquens PA1]
gi|163661765|gb|ABY29132.1| regulatory protein ArsR [Methylobacterium extorquens PA1]
Length = 116
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L++ ++ DI + + L L+ AG +
Sbjct: 19 ASSVRRQILAYLSHTELNAGDIAARFAMSKASISQHLSILEAAGLVES 66
>gi|332994900|gb|AEF04955.1| glycerol-3-phosphate regulon repressor [Alteromonas sp. SN2]
Length = 252
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+ IDD++ + + L +L AG + + G
Sbjct: 20 MSIDDLVTRCDVTPQTIRRDLNQLAEAGIVSRYHGG 55
>gi|298294271|ref|YP_003696210.1| GntR family transcriptional regulator [Starkeya novella DSM 506]
gi|296930782|gb|ADH91591.1| transcriptional regulator, GntR family [Starkeya novella DSM 506]
Length = 311
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYT----QCERVRIKQSLNNVPIHIDDIIHH 56
+V P F ++ D + I+ + R+ L + ++++
Sbjct: 57 IVRPGERGGFVIARPDAENFHKIDHVPNYDDDQIYLDIADDRVSGRL-PDRVTENELLRR 115
Query: 57 TGIEAPVVYLVLLELDLAGRLCHHPE 82
+ + +L + G + P
Sbjct: 116 YKLTRARLAHILRRMANEGWIERLPG 141
>gi|312195492|ref|YP_004015553.1| IclR family transcriptional regulator [Frankia sp. EuI1c]
gi|311226828|gb|ADP79683.1| transcriptional regulator, IclR family [Frankia sp. EuI1c]
Length = 308
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
+I G Y L L+ AG L HP
Sbjct: 30 EIARRLGATPATCYPTLAALERAGWLRRHP 59
>gi|218528766|ref|YP_002419582.1| ArsR family transcriptional regulator [Methylobacterium
chloromethanicum CM4]
gi|218521069|gb|ACK81654.1| transcriptional regulator, ArsR family [Methylobacterium
chloromethanicum CM4]
Length = 106
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R +I L++ ++ DI + + L L+ AG +
Sbjct: 9 ASSVRRQILAYLSHTELNAGDIAARFAMSKASISQHLSILEAAGLVES 56
>gi|262273249|ref|ZP_06051064.1| putative bacterial regulatory protein MarR family protein
[Grimontia hollisae CIP 101886]
gi|262222622|gb|EEY73932.1| putative bacterial regulatory protein MarR family protein
[Grimontia hollisae CIP 101886]
Length = 154
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYP-----EYTQCERVRIKQSLNN-VPIHIDDII 54
MV P + + F + + + RI SL + D+
Sbjct: 1 MVRPDLSLDNFLPYKLVQTAEKVADSMAAIYENAFGISRPEWRIIASLGARDGVMSRDLA 60
Query: 55 HHTGIEAPVVYLVLLELDLAGRLCHHP 81
T ++ V +L L+ G +
Sbjct: 61 RETSLDKVKVSRILSRLEDRGWVERVA 87
>gi|239906676|ref|YP_002953417.1| Probable ATP-dependent helicase lhr [Desulfovibrio magneticus RS-1]
gi|239796542|dbj|BAH75531.1| Probable ATP-dependent helicase lhr [Desulfovibrio magneticus RS-1]
Length = 1472
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVL 68
+ + I Q L+ P +DD++ G+++ ++ VL
Sbjct: 955 LVQPLVAKAKPPRRAKAASEDQSAVREGLIAQWLSYYGPRSLDDLVSRLGLDSAILQAVL 1014
Query: 69 LELDLAGRLCH 79
+L AG +
Sbjct: 1015 EDLQAAGNVVS 1025
>gi|126449852|ref|YP_001081416.1| PadR family transcriptional regulator [Burkholderia mallei NCTC
10247]
gi|126451464|ref|YP_001067410.1| PadR family transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|242316471|ref|ZP_04815487.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
1106b]
gi|254356474|ref|ZP_04972750.1| transcriptional regulator, PadR family [Burkholderia mallei
2002721280]
gi|126225106|gb|ABN88646.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
1106a]
gi|126242722|gb|ABO05815.1| transcriptional regulator, PadR family [Burkholderia mallei NCTC
10247]
gi|148025471|gb|EDK83625.1| transcriptional regulator, PadR family [Burkholderia mallei
2002721280]
gi|242139710|gb|EES26112.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
1106b]
Length = 174
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 52 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 93
>gi|114762347|ref|ZP_01441805.1| Bacterial regulatory protein, DeoR family [Pelagibaca bermudensis
HTCC2601]
gi|114544965|gb|EAU47969.1| Bacterial regulatory protein, DeoR family [Roseovarius sp.
HTCC2601]
Length = 255
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 33 QCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R +I +L N + +D++ + ++ L +L+ G L G
Sbjct: 4 DDRRQQILDALVRNGAVQLDELAEQFAVSKMTIHRDLDDLEGEGLLRKIRGG 55
>gi|289642740|ref|ZP_06474879.1| transcriptional regulator, TrmB [Frankia symbiont of Datisca
glomerata]
gi|289507483|gb|EFD28443.1| transcriptional regulator, TrmB [Frankia symbiont of Datisca
glomerata]
Length = 111
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
R R+ +L + P H D+ GI + L L G + P G+
Sbjct: 19 ADPIRARLLLALRDAPAHPADLAEQLGISRSRLSNHLACLRGCGLVVAVPVGR 71
>gi|269219134|ref|ZP_06162988.1| transcriptional regulator, DeoR family [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211281|gb|EEZ77621.1| transcriptional regulator, DeoR family [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 243
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ + + TG+ A + L EL G + G +
Sbjct: 6 GTEAVSVTALARLTGVSAVTIRRDLTELAHEGLVTRVHGGALR 48
>gi|253689896|ref|YP_003019086.1| transcriptional regulator, DeoR family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756474|gb|ACT14550.1| transcriptional regulator, DeoR family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 257
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 13 DQIMDYLKSHNLVTVDELVSVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 69
>gi|227115401|ref|ZP_03829057.1| DeoR family transcriptional regulator [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 271
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 27 DQIMDYLKSHNLVTVDELVSVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 83
>gi|238561000|ref|ZP_04609384.1| transcriptional regulator, PadR family [Burkholderia mallei GB8
horse 4]
gi|254175544|ref|ZP_04882204.1| transcriptional regulator, PadR family [Burkholderia mallei ATCC
10399]
gi|254202292|ref|ZP_04908655.1| transcriptional regulator, PadR family [Burkholderia mallei FMH]
gi|254207625|ref|ZP_04913975.1| transcriptional regulator, PadR family [Burkholderia mallei JHU]
gi|147746539|gb|EDK53616.1| transcriptional regulator, PadR family [Burkholderia mallei FMH]
gi|147751519|gb|EDK58586.1| transcriptional regulator, PadR family [Burkholderia mallei JHU]
gi|160696588|gb|EDP86558.1| transcriptional regulator, PadR family [Burkholderia mallei ATCC
10399]
gi|238525327|gb|EEP88755.1| transcriptional regulator, PadR family [Burkholderia mallei GB8
horse 4]
Length = 174
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 52 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 93
>gi|50122681|ref|YP_051848.1| DeoR family transcriptional regulator [Pectobacterium
atrosepticum SCRI1043]
gi|49613207|emb|CAG76658.1| DeoR-family transcriptional regulator [Pectobacterium
atrosepticum SCRI1043]
Length = 271
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+I L ++ + +D+++ + L++LD G + G V+L +PS
Sbjct: 27 DQIMDYLKSHNLVTVDELVSVIDASPATIRRDLIKLDEQGVISRSHGG-VTLNRFIPS 83
>gi|194291358|ref|YP_002007265.1| transcriptional regulator IclR family [Cupriavidus taiwanensis LMG
19424]
gi|193225262|emb|CAQ71204.1| Putative transcriptional regulator, IclR family [Cupriavidus
taiwanensis LMG 19424]
Length = 301
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ + V+ +L L++ G + G+
Sbjct: 70 ELARRLKVPRSTVFRLLATLEMMGFVERTDGGR 102
>gi|298291032|ref|YP_003692971.1| hypothetical protein Snov_1032 [Starkeya novella DSM 506]
gi|296927543|gb|ADH88352.1| conserved hypothetical protein [Starkeya novella DSM 506]
Length = 286
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ P+ + + V +L E + G P G+V+
Sbjct: 201 SAEPLGRRALAERFQVSLAHVASLLTEAEARGWFALGPGGRVA 243
>gi|281356715|ref|ZP_06243206.1| transcriptional regulator, AsnC family [Victivallis vadensis ATCC
BAA-548]
gi|281316842|gb|EFB00865.1| transcriptional regulator, AsnC family [Victivallis vadensis ATCC
BAA-548]
Length = 160
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 36 RVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+I L+ + +I G++A V + +L+ G +
Sbjct: 2 ESKILNLLSENARMSASEIALRAGLDAAAVEAAITDLEKRGVIR 45
>gi|118463740|ref|YP_880049.1| ArsR family transcriptional regulator [Mycobacterium avium 104]
gi|118165027|gb|ABK65924.1| transcriptional regulator, ArsR family protein [Mycobacterium
avium 104]
Length = 110
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ H G AP V L +L +A +
Sbjct: 3 ADATRVQVLWSLTDREMSVNELAEHVGKPAPSVSQHLAKLRMARLVR 49
>gi|85704714|ref|ZP_01035815.1| probable glycerol-3-phosphate regulon repressor [Roseovarius sp.
217]
gi|85670532|gb|EAQ25392.1| probable glycerol-3-phosphate regulon repressor [Roseovarius sp.
217]
Length = 261
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++ + + + L EL AG+L G +
Sbjct: 20 VTVEGLAERFDVTVQTIRRDLTELANAGKLERVHGGAI 57
>gi|318041946|ref|ZP_07973902.1| ArsR family transcriptional regulator [Synechococcus sp. CB0101]
Length = 106
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ R+++ L P + +I TG + L +L AG +
Sbjct: 19 EPARLQLLCHLKQGPTDVATLIEATGFSQSHISRQLGQLQRAGLVRC 65
>gi|229490077|ref|ZP_04383928.1| transcriptional regulator, DeoR family [Rhodococcus erythropolis
SK121]
gi|229323011|gb|EEN88781.1| transcriptional regulator, DeoR family [Rhodococcus erythropolis
SK121]
Length = 255
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
++D+ G+ A + L +L G + G ++L H S
Sbjct: 24 SVEDLSAQFGVTASTIRRDLSQLTAQGVIARTYGGAIALNPHPES 68
>gi|126731431|ref|ZP_01747237.1| transcriptional regulator, DeoR family protein [Sagittula
stellata E-37]
gi|126707967|gb|EBA07027.1| transcriptional regulator, DeoR family protein [Sagittula
stellata E-37]
Length = 253
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +D + H G+ + L +L AGRL G V
Sbjct: 20 VTVDGLAAHFGVTLQTIRRDLTDLAEAGRLERVHGGAV 57
>gi|172060942|ref|YP_001808594.1| hypothetical protein BamMC406_1896 [Burkholderia ambifaria MC40-6]
gi|171993459|gb|ACB64378.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
Length = 406
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 12/95 (12%), Positives = 19/95 (20%), Gaps = 1/95 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGI 59
M+ P + L + + G
Sbjct: 297 MLRPLANVTATPHGFALEPLGPRETVVLARPVDDRHAAVLALLADGEAWSSSALALALGA 356
Query: 60 EAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
V L L A ++ G+ M P P
Sbjct: 357 SQRTVQRALDTLAEADKVQALGRGRARRWMTPPLP 391
>gi|300784887|ref|YP_003765178.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299794402|gb|ADJ44777.1| MarR family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 158
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ Q + P+ I + G+ + +L+ G + P
Sbjct: 44 VIQHVLAAPLSITALAERMGVTQQAASKAVADLERRGLVRREPG 87
>gi|157370796|ref|YP_001478785.1| ArsR family transcriptional regulator [Serratia proteamaculans
568]
gi|157322560|gb|ABV41657.1| transcriptional regulator, ArsR family [Serratia proteamaculans
568]
Length = 115
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 33 QCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
R I ++L I ++ + + L+LAG + +G+ + P
Sbjct: 18 DPTRRAILRALAGGEHSIGELAAPLQMSFAGASKHIKALELAGLVQRTVQGRNHICRLEP 77
Query: 93 SP 94
P
Sbjct: 78 EP 79
>gi|315500397|ref|YP_004089200.1| transcriptional regulator, iclr family [Asticcacaulis excentricus
CB 48]
gi|315418409|gb|ADU15049.1| transcriptional regulator, IclR family [Asticcacaulis excentricus
CB 48]
Length = 249
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 38 RIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
I + L + P+ I +I G +Y ++L L+ G L G+ ++T L
Sbjct: 16 EIIEFLAGQSDPLSIGEICAGVGRSKAEIYRMILTLEGKGYLRRDIAGRYTMTSRL 71
>gi|29828732|ref|NP_823366.1| hypothetical protein SAV_2190 [Streptomyces avermitilis MA-4680]
gi|29605836|dbj|BAC69901.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 118
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
Q E RI L P+ + ++ + A VV ++L +L AGR+ HP +S T L
Sbjct: 47 PQPEHTRIL-RLCAEPVVVAELAAGLDLPASVVVILLCDLLEAGRITAHPPRLLSRTTDL 105
Query: 92 PSPQ 95
Q
Sbjct: 106 DLLQ 109
>gi|331696347|ref|YP_004332586.1| IclR family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326951036|gb|AEA24733.1| transcriptional regulator, IclR family [Pseudonocardia
dioxanivorans CB1190]
Length = 282
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVL 68
+ ++ + P + + + P + + G+ +L
Sbjct: 13 VRPRPAAAEPAEDTDAGEGPLRSVAIAMAVLDCFGEEPELGATKVAQRLGVAKSTACRML 72
Query: 69 LELDLAGRLCHHPEGKVSLTMHL 91
L G L G+ L + L
Sbjct: 73 AALASGGLLERSGAGRYRLGLRL 95
>gi|325068524|ref|ZP_08127197.1| transcriptional regulator, DeoR family protein [Actinomyces oris
K20]
Length = 258
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 36 RVRIKQS-LNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
I ++ +HIDDII G+ A L L + G ++ P
Sbjct: 7 HSAILDIIMDEGSVHIDDIITRLGVSAATARRDLDHLADQQLISRTRGGAIANPTSTEPP 66
>gi|289627726|ref|ZP_06460680.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647407|ref|ZP_06478750.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330866385|gb|EGH01094.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330986431|gb|EGH84534.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 256
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R I + + + ++D++ G+ V L L G + G + P
Sbjct: 7 RQAILELVLSGKSNVDELCAQLGVSEATVRRDLTALAEDGLILRTYGGAAHVGQREPE 64
>gi|152981351|ref|YP_001352423.1| IclR family transcriptional regulator [Janthinobacterium sp.
Marseille]
gi|151281428|gb|ABR89838.1| transcriptional regulator, IclR family [Janthinobacterium sp.
Marseille]
Length = 258
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ +L P+ + ++ TG+ + +L +L + + G L M L
Sbjct: 20 ALLDALALYPDPVSLKELSSVTGLHPSTAHRILNDLVIKRFVDRSEPGTYRLGMRL 75
>gi|311696637|gb|ADP99510.1| DNA protecting protein DprA [marine bacterium HP15]
Length = 380
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 6/55 (10%), Positives = 16/55 (29%)
Query: 8 QNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
++++ + + ++L P D + TG+ A
Sbjct: 300 SPPLANEAAGTPEPKPGGKGPLAGLDGREIAVFEALGYDPQSTDALSSATGLPAD 354
>gi|315499172|ref|YP_004087976.1| transcriptional regulator, deor family [Asticcacaulis excentricus
CB 48]
gi|315417184|gb|ADU13825.1| transcriptional regulator, DeoR family [Asticcacaulis excentricus
CB 48]
Length = 282
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 39 IKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
I LN +D++ G+ + L EL G L G + +
Sbjct: 10 IIDELNPDRVTSVDELTARLGVSPATIRRDLNELHDLGHLLRVRGGAMRI 59
>gi|145294383|ref|YP_001137204.1| hypothetical protein cgR_0338 [Corynebacterium glutamicum R]
gi|140844303|dbj|BAF53302.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 91
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 33 QCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ R+RI L P ++++ G+ P + L ++ AG L PEG+
Sbjct: 16 EPVRLRILSHLAAEGCTPTTVNELTEIMGLSQPTISHHLKKMTDAGLLARIPEGR 70
>gi|298487893|ref|ZP_07005933.1| Transcriptional repressor of the fructose operon, DeoR family
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298157618|gb|EFH98698.1| Transcriptional repressor of the fructose operon, DeoR family
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 256
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R I + + + ++D++ G+ V L L G + G + P
Sbjct: 7 RQAILELVLSGKSNVDELCAQLGVSEATVRRDLTALAEDGLILRTYGGAAHVGQREPE 64
>gi|294499446|ref|YP_003563146.1| putative marR-family transcriptional regulator [Bacillus
megaterium QM B1551]
gi|294349383|gb|ADE69712.1| Putative marR-family transcriptional regulator [Bacillus
megaterium QM B1551]
Length = 145
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 25 ITHYPEYTQCERVR--IKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
TH P+ +R + L+ P+ I+ + + + + L+ + P
Sbjct: 21 TTHSPKLGSLDRSEYLLLSELDQRSPLGINALAENLKLSLSTASRQVSALETKQFVRRFP 80
Query: 82 ---EGKVSL 87
G++SL
Sbjct: 81 SPENGRISL 89
>gi|171915689|ref|ZP_02931159.1| hypothetical protein VspiD_31000 [Verrucomicrobium spinosum DSM
4136]
Length = 345
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
I PIH ++ TG + +L E+ L+G L
Sbjct: 186 EIILALAGGSPIHASELARMTGYAPRTLQTLLQEMTLSGHL 226
>gi|322368394|ref|ZP_08042963.1| conditioned medium-induced protein 2 [Haladaptatus
paucihalophilus DX253]
gi|320552410|gb|EFW94055.1| conditioned medium-induced protein 2 [Haladaptatus
paucihalophilus DX253]
Length = 243
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI + L++ P ++ +I + G+ V L +L+ AG +
Sbjct: 15 RRRILRLLSHKPCYVTEISDYLGVSPKAVIDHLRKLEEAGLVES 58
>gi|311900480|dbj|BAJ32888.1| putative ArsR family transcriptional regulator [Kitasatospora setae
KM-6054]
Length = 329
Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
Query: 18 NHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL 77
+ R RI +L + P + V L L AG L
Sbjct: 244 EPGGPVPPGALAALLGRSRARILAAL-DSPASTTQLARALDQAPGAVADHLAVLRTAGLL 302
Query: 78 CHHPEGKVSLTMHLPS 93
G+ L P
Sbjct: 303 SRARAGRSVLYRRTPM 318
>gi|256391220|ref|YP_003112784.1| ArsR family transcriptional regulator [Catenulispora acidiphila DSM
44928]
gi|256357446|gb|ACU70943.1| transcriptional regulator, ArsR family [Catenulispora acidiphila
DSM 44928]
Length = 339
Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELD 72
+ + E R RI ++ P ++ + V L L
Sbjct: 258 PVARRPPGRRPEAARPEELIGRTRARILDAV-ADPATTGEVAGRLRLSPSTVSYHLQILH 316
Query: 73 LAGRLCH 79
AG +
Sbjct: 317 RAGLVRR 323
>gi|53725524|ref|YP_103598.1| transcriptional regulator [Burkholderia mallei ATCC 23344]
gi|52428947|gb|AAU49540.1| transcriptional regulator, putative [Burkholderia mallei ATCC
23344]
Length = 171
Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 49 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 90
>gi|167720908|ref|ZP_02404144.1| hypothetical protein BpseD_18014 [Burkholderia pseudomallei DM98]
gi|167739886|ref|ZP_02412660.1| hypothetical protein Bpse14_17634 [Burkholderia pseudomallei 14]
gi|167817107|ref|ZP_02448787.1| hypothetical protein Bpse9_18357 [Burkholderia pseudomallei 91]
gi|167825518|ref|ZP_02456989.1| hypothetical protein Bpseu9_17745 [Burkholderia pseudomallei 9]
gi|167847006|ref|ZP_02472514.1| hypothetical protein BpseB_17145 [Burkholderia pseudomallei
B7210]
Length = 128
Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 32 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 73
>gi|294629360|ref|ZP_06707920.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292832693|gb|EFF91042.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 419
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 11 FSSQSDTNHTKNINITHYPEYTQCERVR------IKQSLNNVPIHIDDIIHHTGIEAPVV 64
++ + + P +R R ++ L + P+ I TG+ V
Sbjct: 16 PMPRTAAPTHTPVLSSPVPRLADPDRRRTSASVVLRSVLAHGPVARSTIARLTGLSPASV 75
Query: 65 YLVLLELDLAGRLC-----HHPEG 83
L G + G
Sbjct: 76 TDHCTRLARLGLIREAAVPRQSGG 99
>gi|197123196|ref|YP_002135147.1| DNA protecting protein DprA [Anaeromyxobacter sp. K]
gi|196173045|gb|ACG74018.1| DNA protecting protein DprA [Anaeromyxobacter sp. K]
Length = 312
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ + ++L P H D++ GI
Sbjct: 239 AAPAPVQAPLPALDDRGTALLRALGRRPRHADELAREAGIPVGAALA 285
>gi|320334752|ref|YP_004171463.1| ATP-dependent DNA helicase, RecQ family [Deinococcus maricopensis
DSM 21211]
gi|319756041|gb|ADV67798.1| ATP-dependent DNA helicase, RecQ family [Deinococcus maricopensis
DSM 21211]
Length = 546
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 33 QCER-VRIKQSL--NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTM 89
++ R+ ++L ++ P+ D++ T + + L+ G L P G++S
Sbjct: 359 DADQVERVMRALEEHDGPVRTDELREQTDLSQTKFLTAVSRLEDVGALEVLPNGELSAVD 418
Query: 90 HLPSPQ 95
+P+
Sbjct: 419 GADTPE 424
>gi|298290998|ref|YP_003692937.1| hypothetical protein Snov_0996 [Starkeya novella DSM 506]
gi|296927509|gb|ADH88318.1| conserved hypothetical protein [Starkeya novella DSM 506]
Length = 406
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 1/92 (1%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIE 60
+ P + + + + L + + G
Sbjct: 298 LRPFADIVATKQGFALVPADKRPVAVMAPPVEESHADVLAFLADGESWSSSALALALGAS 357
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
V L EL AG++ + G+ P
Sbjct: 358 QRTVQRALEELAAAGKVQPYGLGRARRWTTPP 389
>gi|212223806|ref|YP_002307042.1| LexA-related DNA-binding protein [Thermococcus onnurineus NA1]
gi|212008763|gb|ACJ16145.1| LexA-related DNA-binding protein [Thermococcus onnurineus NA1]
Length = 84
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 37 VRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+I + + +D+I + V L L+ G +
Sbjct: 3 EQILELI-KEGKSLDEIAERLSLPREEVEGALKILETLGYIERV 45
>gi|71735133|ref|YP_275597.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555686|gb|AAZ34897.1| transcriptional regulator, DeoR family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320325056|gb|EFW81125.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. B076]
Length = 256
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R I + + + ++D++ G+ V L L G + G + P
Sbjct: 7 RQAILELVLSGKSNVDELCAQLGVSEATVRRDLTALAEDGLILRTYGGAAHVGQREPE 64
>gi|54026111|ref|YP_120353.1| putative Rossmann-fold nucleotide-binding protein [Nocardia
farcinica IFM 10152]
gi|54017619|dbj|BAD58989.1| putative Rossmann-fold nucleotide-binding protein [Nocardia
farcinica IFM 10152]
Length = 392
Score = 34.0 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 26 THYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
T E + + +L ++ TG+ P V L+ L++AG + G
Sbjct: 317 TTVAESLTGDEAVVYAALPAIGSRLPGELCGTTGLSTPAVRAALVALEMAGLVGADATGW 376
Query: 85 VSLT 88
L
Sbjct: 377 SRLA 380
>gi|239816796|ref|YP_002945706.1| transcriptional regulator, IclR family [Variovorax paradoxus
S110]
gi|239803373|gb|ACS20440.1| transcriptional regulator, IclR family [Variovorax paradoxus
S110]
Length = 278
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPI-----HIDDIIHHTGIEAPVVYLVLLELDLAGR 76
T P +R+ L + + ++ TG+ P ++ +L +L+ AG
Sbjct: 11 PTPETLEPAPGDTPTMRLFGLLEVMAAKDQRYSLQGLVEETGMPKPTLHRMLQQLEGAGL 70
Query: 77 LCHHPEGK 84
L +G+
Sbjct: 71 LQREGDGR 78
>gi|332528108|ref|ZP_08404139.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus
JA2]
gi|332112679|gb|EGJ12472.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus
JA2]
Length = 243
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ L P+ + +I TG+ + +L +L + + G L M L
Sbjct: 7 ALLDMLAAHPDPVSLKEISERTGLHPSTAHRILNDLTIGRLVDRPQAGSYRLGMRL 62
>gi|294811382|ref|ZP_06770025.1| Zinc finger SWIM domain protein [Streptomyces clavuligerus ATCC
27064]
gi|294323981|gb|EFG05624.1| Zinc finger SWIM domain protein [Streptomyces clavuligerus ATCC
27064]
Length = 481
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHID--DIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + I L P+ ID ++ +G+ V L+ L AGR+
Sbjct: 303 EALSTPEAEQDAELISVLLAWEPV-IDPAELADRSGLPVERVRAALVRLGTAGRV 356
>gi|226362833|ref|YP_002780611.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
gi|226241318|dbj|BAH51666.1| putative IclR family transcriptional regulator [Rhodococcus
opacus B4]
Length = 264
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 19 HTKNINITHYPEYTQCERV--RIKQSLNNVPIH--IDDIIHHTGIEAPVVYLVLLELDLA 74
+ E T R + + ++++ TGI V ++ E++
Sbjct: 3 PVERNTSEVGDEPTSVVRRMSDLLAAFGPTDTTLGVNELTRRTGIPKATVSRLVKEMEGV 62
Query: 75 GRLCH 79
G L
Sbjct: 63 GFLER 67
>gi|152978247|ref|YP_001343876.1| DNA protecting protein DprA [Actinobacillus succinogenes 130Z]
gi|150839970|gb|ABR73941.1| DNA protecting protein DprA [Actinobacillus succinogenes 130Z]
Length = 376
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 19 HTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
+P+ + + + + + I +D++ TG+
Sbjct: 310 PNPRPPSARHPDPQHPD---LFKLIGHDLISVDELATQTGLGVEA 351
>gi|269793306|ref|YP_003318210.1| transcriptional regulator, DeoR family [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100941|gb|ACZ19928.1| transcriptional regulator, DeoR family [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 256
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
R I + + I H G V L L+ G L G
Sbjct: 7 RSAILALVGQGISSVPQIAHRVGASEATVRRDLAHLEERGLLRRTHGG 54
>gi|159896646|ref|YP_001542893.1| ArsR family transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159889685|gb|ABX02765.1| transcriptional regulator, ArsR family [Herpetosiphon aurantiacus
ATCC 23779]
Length = 429
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRL-CHHPEG 83
R++I + L + II T + V L L AG + G
Sbjct: 251 ADAARIQIMELLAQGELSAQAIISQTQLPQSSVSRHLNILRNAGFVQERRAGG 303
>gi|302540189|ref|ZP_07292531.1| GntR family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302457807|gb|EFL20900.1| GntR family transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length = 238
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIK-QSLN---NVPIHIDDIIHHT 57
+ P + + + + + T+ +RI LN + + +
Sbjct: 1 MAPAERGGYTVALTGQALAEASPAPSAEDDTEDAYLRIAADRLNGDLPDRVTENALARRY 60
Query: 58 GIEAPVVYLVLLELDLAGRLCHHPE 82
+ + +L + + G + P
Sbjct: 61 DLMPGRLAHILRRIAVEGWIERLPG 85
>gi|239979268|ref|ZP_04701792.1| MarR family transcriptional regulator [Streptomyces albus J1074]
Length = 140
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 19/61 (31%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + + R+ L+ + + I E V ++ L L G +
Sbjct: 25 EEYDRAAAEQALTGAQARVLGLLSLEAMPMRQIARRLKCEPSNVTGIVDRLALRGLVERQ 84
Query: 81 P 81
Sbjct: 85 A 85
>gi|172054846|gb|ACB71245.1| polyketide synthase module protein ZPNJKS2 [Pseudoalteromonas sp.
NJ632]
Length = 931
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 19/79 (24%), Gaps = 1/79 (1%)
Query: 3 HPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAP 62
P E S + +I+ + + P + + A
Sbjct: 718 RPLSELTLASPDAIDALATFAESQKNAPSLPTLVSQIENAAQHSPK-LPALSIACEANAG 776
Query: 63 VVYLVLLELDLAGRLCHHP 81
+ L +L G+
Sbjct: 777 ELAATLSYCELNGQANQLA 795
>gi|328955018|ref|YP_004372351.1| DeoR family transcriptional regulator [Coriobacterium glomerans
PW2]
gi|328455342|gb|AEB06536.1| transcriptional regulator, DeoR family [Coriobacterium glomerans
PW2]
Length = 270
Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 28 YPEYTQCERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
P Y R I L+ + + + + + A + L L+ AG+L G VS
Sbjct: 5 KPLYADERRASILAVLDRSASVQVSGLARAFSVSAVTIRGDLDALERAGKLRRTHGGAVS 64
Query: 87 L 87
L
Sbjct: 65 L 65
>gi|37521330|ref|NP_924707.1| hypothetical protein gll1761 [Gloeobacter violaceus PCC 7421]
gi|35212327|dbj|BAC89702.1| gll1761 [Gloeobacter violaceus PCC 7421]
Length = 360
Score = 34.0 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
+ P + RI + D++ TG+ +
Sbjct: 296 PSALPPVLDGDEKRIWDQIQGDGCSFDELALGTGLTTDRLASA 338
>gi|330953687|gb|EGH53947.1| DeoR family transcriptional regulator [Pseudomonas syringae Cit
7]
Length = 256
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R I + + + ++D++ G+ V L L G + G + P
Sbjct: 7 RQAILELVLSGKSNVDELCAQLGVSEATVRRDLTALAEHGLILRTYGGAAHVGQREPE 64
>gi|331695679|ref|YP_004331918.1| IclR family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326950368|gb|AEA24065.1| transcriptional regulator, IclR family [Pseudonocardia
dioxanivorans CB1190]
Length = 233
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ ++ P + ++ TG+ + + + L++ G L +G+
Sbjct: 16 VLRAAAAEPCGLTELCERTGLPRATAHRLAVGLEVHGLLHRGADGR 61
>gi|289760956|ref|ZP_06520334.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
GM 1503]
gi|289708462|gb|EFD72478.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
GM 1503]
Length = 140
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ G AP V L +L +A +
Sbjct: 28 ADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVR 74
>gi|83310926|ref|YP_421190.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82945767|dbj|BAE50631.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 161
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLL 69
FS + T RVRI + L + + I + + L
Sbjct: 14 PFSELTVAFPMLETFETVAKAVADPSRVRILKLLEGGELCVCQITTVLDLAPATISKHLA 73
Query: 70 ELDLAGRLCHHPEG---KVSLT 88
L AG + +G L
Sbjct: 74 ALKTAGLVQQRRDGKWVYYRLA 95
>gi|311107403|ref|YP_003980256.1| ArsR family transcriptional regulator [Achromobacter xylosoxidans
A8]
gi|310762092|gb|ADP17541.1| bacterial regulatory protein, ArsR family protein 4
[Achromobacter xylosoxidans A8]
Length = 150
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 21/63 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R R+ L + ++ + P L L+ AG + +G+V
Sbjct: 17 ADGTRRRVLADLEQGAASVSELARPHAMSLPAFMKHLRVLEDAGLIARAKDGRVVNCTLS 76
Query: 92 PSP 94
P P
Sbjct: 77 PEP 79
>gi|218752490|ref|ZP_03531286.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
Length = 138
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ G AP V L +L +A +
Sbjct: 26 ADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVR 72
>gi|41406759|ref|NP_959595.1| hypothetical protein MAP0661c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395109|gb|AAS02978.1| hypothetical protein MAP_0661c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 135
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ H G AP V L +L +A +
Sbjct: 28 ADATRVQVLWSLTDREMSVNELAEHVGKPAPSVSQHLAKLRMARLVR 74
>gi|326439887|ref|ZP_08214621.1| hypothetical protein SclaA2_02425 [Streptomyces clavuligerus ATCC
27064]
Length = 477
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 25 ITHYPEYTQCERVRIKQSLNNVPIHID--DIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + I L P+ ID ++ +G+ V L+ L AGR+
Sbjct: 299 EALSTPEAEQDAELISVLLAWEPV-IDPAELADRSGLPVERVRAALVRLGTAGRV 352
>gi|257484996|ref|ZP_05639037.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331011006|gb|EGH91062.1| DeoR family transcriptional regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 256
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
R I + + + ++D++ G+ V L L G + G + P
Sbjct: 7 RQAILELVLSGKSNVDELCTQLGVSEATVRRDLTALAEDGLILRTYGGAAHVGQREPE 64
>gi|320100486|ref|YP_004176078.1| helix-turn-helix, type 11 domain-containing protein
[Desulfurococcus mucosus DSM 2162]
gi|319752838|gb|ADV64596.1| helix-turn-helix, type 11 domain protein [Desulfurococcus mucosus
DSM 2162]
Length = 63
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 36 RVRIKQSLNNV--PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ R+ + L + P+ +I TG+ V L +L G + PEG V
Sbjct: 8 KERLVEFLGSQGKPLMPKEISRLTGLNYNTVRARLHDLRKEGLVERRPEGWV 59
>gi|239928201|ref|ZP_04685154.1| hypothetical protein SghaA1_08243 [Streptomyces ghanaensis ATCC
14672]
gi|291436532|ref|ZP_06575922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339427|gb|EFE66383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 119
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
Q E RI L P+ + +I + VV ++L +L AGR+ P
Sbjct: 38 DPQPETAPRPQPEHTRIL-RLCAEPVAVAEIAARLDLPVSVVVILLCDLLEAGRITARPP 96
Query: 83 GKVSLTM 89
V+ T
Sbjct: 97 HPVTRTT 103
>gi|262199702|ref|YP_003270911.1| DEAD/H associated domain protein [Haliangium ochraceum DSM 14365]
gi|262083049|gb|ACY19018.1| DEAD/H associated domain protein [Haliangium ochraceum DSM 14365]
Length = 1573
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNV-PIHIDDIIHHTGIEAP 62
P ++ P + + ++ L+ P + G+
Sbjct: 979 PVARAAVPEAEELPALPPLPFAVEVPAPEEVDVRIVRAHLDYSGPRSGRRLADELGLPGA 1038
Query: 63 VVYLVLLELDLAGRLCH 79
V L+ G +
Sbjct: 1039 RVLAACYALENDGAILR 1055
>gi|114798458|ref|YP_760828.1| IclR family transcriptional regulator [Hyphomonas neptunium ATCC
15444]
gi|114738632|gb|ABI76757.1| transcriptional regulator, IclR family [Hyphomonas neptunium ATCC
15444]
Length = 258
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 25 ITHYPEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
Y + + I + L + P I DI + G +Y +++ L++ G +
Sbjct: 3 EAPYKAPALEKGLDILECLASLRTPQSISDIARNIGRSRSEIYRMVVVLEMRGYVER 59
>gi|116694698|ref|YP_728909.1| IclR family transcriptional regulator [Ralstonia eutropha H16]
gi|113529197|emb|CAJ95544.1| transcriptional regulator, IclR-family [Ralstonia eutropha H16]
Length = 283
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ + V+ +L L++ G + G+
Sbjct: 52 ELARRLKVPRSTVFRLLATLEMMGFVERTDGGR 84
>gi|284048029|ref|YP_003398368.1| Peptidase M23 [Acidaminococcus fermentans DSM 20731]
gi|283952250|gb|ADB47053.1| Peptidase M23 [Acidaminococcus fermentans DSM 20731]
Length = 377
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 10/88 (11%), Positives = 27/88 (30%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
++ + E + Q H ++ ER ++ + +D
Sbjct: 167 LLQQKAELDDIRKQLAAAHAESQKEKEIVAQKTVERQKLYEQALAEKAQLDAEYEELQRN 226
Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLT 88
+ + ++ ++ GR+ G L
Sbjct: 227 SQEITAMIQRMEQEGRMMPQAGGTGQLA 254
>gi|312195888|ref|YP_004015949.1| ArsR family transcriptional regulator [Frankia sp. EuI1c]
gi|311227224|gb|ADP80079.1| transcriptional regulator, ArsR family [Frankia sp. EuI1c]
Length = 259
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 32 TQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
R R+ +L+ + + ++ + V L L+ AG + G+ L
Sbjct: 6 ADPTRRRLLDALHAQAGLTLGELCDGLAMRRQSVSEHLALLEAAGLVTAVRSGRRKLHYL 65
Query: 91 LPSP 94
P P
Sbjct: 66 NPVP 69
>gi|330508593|ref|YP_004385021.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6]
gi|328929401|gb|AEB69203.1| radical SAM domain protein [Methanosaeta concilii GP-6]
Length = 302
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
V P E+ + I + R RI SL P +++I +
Sbjct: 208 VRPLSEEEMVRMLEIFPGAELIPDWDWRVPVD-IRNRILDSLCRSPSTLEEICRLHDLTD 266
Query: 62 PVVYLVLLELDLAGRL-CHHPEGKVS 86
L+ G + GK+
Sbjct: 267 SDAIKYCKILEHDGLITRRIEGGKLC 292
>gi|300783644|ref|YP_003763935.1| IclR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299793158|gb|ADJ43533.1| IclR family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 220
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ Q++ + P + ++ TG+ + + + L++ L P+G+
Sbjct: 2 AVLQAVADDPCGLAELCTRTGLPRATAHRLAVGLEVHRLLRRGPDGR 48
>gi|73537433|ref|YP_297800.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134]
gi|72120770|gb|AAZ62956.1| transcriptional regulator, IclR family [Ralstonia eutropha
JMP134]
Length = 274
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
++ + V+ +L L++ G + G+
Sbjct: 40 ELARRLKVPRSTVFRLLATLEMMGFVERTDGGR 72
>gi|53720317|ref|YP_109303.1| hypothetical protein BPSL2707 [Burkholderia pseudomallei K96243]
gi|226193800|ref|ZP_03789402.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
Pakistan 9]
gi|52210731|emb|CAH36715.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|225934105|gb|EEH30090.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
Pakistan 9]
Length = 148
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 52 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 93
>gi|145224080|ref|YP_001134758.1| putative transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315444417|ref|YP_004077296.1| condensin subunit ScpB [Mycobacterium sp. Spyr1]
gi|145216566|gb|ABP45970.1| condensin subunit ScpB [Mycobacterium gilvum PYR-GCK]
gi|315262720|gb|ADT99461.1| condensin subunit ScpB [Mycobacterium sp. Spyr1]
Length = 243
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSL---NNVPIHIDDIIHHTGIEAPVVYLVLLE 70
+T+ T + E E + ++L + P+ +D + T + V L
Sbjct: 18 DPETDVTDETDDAPAVELDDTELDSVLEALLLVVDTPVTVDTLAGVTDAPSARVAARLQV 77
Query: 71 LDLAGRLCHHPE 82
L G
Sbjct: 78 LA-DGYAARDSG 88
>gi|222874975|gb|EEF12106.1| p-protein [Populus trichocarpa]
Length = 293
Score = 34.0 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 7/79 (8%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIH--IDDII-----HHTGIEAPVV 64
++ + E+ + + L ID ++ G+
Sbjct: 15 RPTLAELEARDAFAARHIGPDSAEQQHMLKVLGFESRAALIDAVVPAAIRRRDGMSLGEF 74
Query: 65 YLVLLELDLAGRLCHHPEG 83
L E GRL
Sbjct: 75 TAPLTEEAALGRLRALAGK 93
>gi|239987422|ref|ZP_04708086.1| MarR family transcriptional regulator [Streptomyces roseosporus
NRRL 11379]
Length = 134
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + R+ L+ P+ + I E V ++ L+ G +
Sbjct: 25 EEYDRAAAEHSLTGAQARVLGLLSLEPLPMRKIAVRLKCEPSNVTGIIDRLEARGLVERR 84
Query: 81 P 81
P
Sbjct: 85 P 85
>gi|170743701|ref|YP_001772356.1| IclR family transcriptional regulator [Methylobacterium sp. 4-46]
gi|168197975|gb|ACA19922.1| transcriptional regulator, IclR family [Methylobacterium sp.
4-46]
Length = 234
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 34 CERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLT 88
R+ L + + + ++ TG+ + + + L+ + +G+ L
Sbjct: 15 ASADRVLTVLTAFRRGDDALELSELARRTGLVKSTIMRLCISLEKFDLIERLDDGRYRLG 74
Query: 89 MHL 91
+
Sbjct: 75 VEA 77
>gi|145224718|ref|YP_001135396.1| DNA protecting protein DprA [Mycobacterium gilvum PYR-GCK]
gi|315445048|ref|YP_004077927.1| DNA protecting protein DprA [Mycobacterium sp. Spyr1]
gi|145217204|gb|ABP46608.1| DNA protecting protein DprA [Mycobacterium gilvum PYR-GCK]
gi|315263351|gb|ADU00093.1| DNA protecting protein DprA [Mycobacterium sp. Spyr1]
Length = 388
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPV 63
+ +S T + + + +L +D+I G+ A
Sbjct: 293 AADIVELVGRSGEFAPDLDRPTTGLDDLDDVELAVFDALPGRGMSTVDEIAVTAGLPATD 352
Query: 64 VYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
V L L++ G G P+ Q
Sbjct: 353 VLGPLTMLNVRGLAVQENGGWKLAKRWPPAAQ 384
>gi|291451146|ref|ZP_06590536.1| MarR-family transcriptional regulator [Streptomyces albus J1074]
gi|291354095|gb|EFE80997.1| MarR-family transcriptional regulator [Streptomyces albus J1074]
Length = 143
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 19/61 (31%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + + R+ L+ + + I E V ++ L L G +
Sbjct: 28 EEYDRAAAEQALTGAQARVLGLLSLEAMPMRQIARRLKCEPSNVTGIVDRLALRGLVERQ 87
Query: 81 P 81
Sbjct: 88 A 88
>gi|254821400|ref|ZP_05226401.1| hypothetical protein MintA_15794 [Mycobacterium intracellulare
ATCC 13950]
Length = 292
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHID--DIIHHTGIEAPVVYLVLLELDLAGRL 77
+ + + +L N P + ++ I LVL EL+ +
Sbjct: 2 AQARGEPRPKSPPTARVMDVLAALANSPGGLTSAELAKRCAISTSTCALVLAELERRAWV 61
Query: 78 CHHPEGKVSL 87
+ + L
Sbjct: 62 ARRGDRRYVL 71
>gi|254361399|ref|ZP_04977540.1| DeoR family transcriptional regulator [Mannheimia haemolytica
PHL213]
gi|261494186|ref|ZP_05990688.1| DeoR family transcriptional regulator [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261495582|ref|ZP_05992028.1| DeoR family transcriptional regulator [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153092905|gb|EDN73936.1| DeoR family transcriptional regulator [Mannheimia haemolytica
PHL213]
gi|261308689|gb|EEY09946.1| DeoR family transcriptional regulator [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310167|gb|EEY11368.1| DeoR family transcriptional regulator [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 251
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 37 VRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+I L N+ ++ ++ T + L++LD G + G VSL +P
Sbjct: 7 EQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDEEGVVIRTHGG-VSLNQFIP 62
>gi|229488596|ref|ZP_04382462.1| transcriptional regulator, ArsR family [Rhodococcus erythropolis
SK121]
gi|229324100|gb|EEN89855.1| transcriptional regulator, ArsR family [Rhodococcus erythropolis
SK121]
Length = 114
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI L+ P ++++ I + + L+ AG +
Sbjct: 19 ADPVRRRIIARLSTGPQTVNELAEPFEITKQAISKHIQVLEAAGLVTR 66
>gi|53804089|ref|YP_114029.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
Bath]
gi|53757850|gb|AAU92141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
capsulatus str. Bath]
Length = 1412
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 13 SQSDTNHTKNINITHYPE--YTQCERVRIKQ-SLNNV-PIHIDDIIHHTGIEAPVVYLVL 68
+ T ++ E + V + + L P+ + ++ TG+ A + L
Sbjct: 948 PDTATEPALSLPPALDAELWESGPALVEVLRTRLGVTGPVTVARLVAETGLAAGTLGAAL 1007
Query: 69 LELDLAGRLCH 79
L+ G +
Sbjct: 1008 CALESEGTVLR 1018
>gi|88705376|ref|ZP_01103087.1| SMF protein [Congregibacter litoralis KT71]
gi|88700466|gb|EAQ97574.1| SMF protein [Congregibacter litoralis KT71]
Length = 375
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPV 63
P + S+ P RI + L + + + + + P
Sbjct: 284 PITAMDDLSALFPGVAPVAAPEEIAPTGP---AARILRLLGDDGLSLRALHDAMDMSVPD 340
Query: 64 VYLVLLELDLAGRLCHHPEGK 84
+ +L +L++ G L
Sbjct: 341 LLALLSDLEVQGWLSSIDGRY 361
>gi|302528606|ref|ZP_07280948.1| predicted protein [Streptomyces sp. AA4]
gi|302437501|gb|EFL09317.1| predicted protein [Streptomyces sp. AA4]
Length = 221
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 36 RVRIKQS-LNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
R RI L+ P+ D + G + L L + G L HP +V
Sbjct: 18 RERILSGELSPGTPVTEDAVAEDLGASRATIRQALNTLLMDGLLTRHPTTRV 69
>gi|111225142|ref|YP_715936.1| putative DNA processing Smf-family protein [Frankia alni ACN14a]
gi|111152674|emb|CAJ64415.1| Putative DNA processing Smf-family protein [Frankia alni ACN14a]
Length = 442
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 20 TKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ + + ++ + + + + TG+ V +L L + G +
Sbjct: 358 ERPPTAAGPRDELSAMVRGLLDAMPSRAAVGVSVLSQRTGLRPEEVLAMLGPLTVEGLVE 417
Query: 79 HHPEGK 84
P G
Sbjct: 418 SVPTGY 423
>gi|91778945|ref|YP_554153.1| DEAD-box ATP dependent DNA helicase [Burkholderia xenovorans LB400]
gi|91691605|gb|ABE34803.1| ATP dependent helicase, Lhr family [Burkholderia xenovorans LB400]
Length = 1510
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 2 VHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEA 61
++P+ FS + R R+ P+ I + A
Sbjct: 1026 LYPEAR---FSPPLAAPKGYTDSWNADDALLDVLRARLT---GFGPLPASAIAAALKLPA 1079
Query: 62 PVVYLVLLELDLAGRLCH 79
V L+ L+ G +
Sbjct: 1080 ASVEQSLMRLEAEGYVMR 1097
>gi|145638193|ref|ZP_01793803.1| 2-isopropylmalate synthase [Haemophilus influenzae PittII]
gi|145272522|gb|EDK12429.1| 2-isopropylmalate synthase [Haemophilus influenzae PittII]
gi|309751349|gb|ADO81333.1| DNA processing chain A [Haemophilus influenzae R2866]
Length = 373
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|317506472|ref|ZP_07964273.1| LexA repressor [Segniliparus rugosus ATCC BAA-974]
gi|316255233|gb|EFV14502.1| LexA repressor [Segniliparus rugosus ATCC BAA-974]
Length = 279
Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 4 PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNV------PIHIDDIIHHT 57
P E + + + + +T P + I + + + P I +I
Sbjct: 37 PAAEPD--NGSPEPAPLAEVKVTPPPPELSPRQQEILEIIRSSIRERGFPPSIREIGEAA 94
Query: 58 GI-EAPVVYLVLLELDLAGRLCHHP 81
G+ V L L G L
Sbjct: 95 GLASTSSVAHQLRSLQQKGYLRREA 119
>gi|302524986|ref|ZP_07277328.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302433881|gb|EFL05697.1| transcriptional regulator [Streptomyces sp. AA4]
Length = 233
Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 38 RIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
+ Q++ P + ++ TG+ + + + L++ L P+G+
Sbjct: 15 AVLQAVAEDPCGLAELCTRTGLPRATAHRLAVGLEVHRLLRRGPDGR 61
>gi|299530212|ref|ZP_07043638.1| transcriptional regulator, IclR family protein [Comamonas
testosteroni S44]
gi|298721869|gb|EFI62800.1| transcriptional regulator, IclR family protein [Comamonas
testosteroni S44]
Length = 242
Score = 34.0 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 21 KNINITHYPEYTQCERVRIKQSLN-----NVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+++ + R L + + + ++ T + V +L L+ G
Sbjct: 8 ESVADENAAPGGVAAVDRALSVLGAFQDGDAALSLAELAERTRLYKSTVLRLLASLEHGG 67
Query: 76 RLCHHPEGKVSL 87
+ +G+ ++
Sbjct: 68 WVQRQDDGRYAV 79
>gi|195541976|gb|ACF98174.1| putative nitrite reductase [NAD(P)H] small subunit NirD [uncultured
bacterium 2303]
Length = 339
Score = 34.0 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 18/75 (24%), Gaps = 4/75 (5%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL----NNVPIHIDDIIHHTGIEAPVV 64
+ + + P R+ +L P DD+ G+
Sbjct: 154 DLDGRDLRGASARRLPAPVTPITLDERDARLVAALEDGLAPTPRPYDDLAQRAGVAPAFA 213
Query: 65 YLVLLELDLAGRLCH 79
+ L G +
Sbjct: 214 RVRLAAWLNRGAIAR 228
>gi|297202659|ref|ZP_06920056.1| DNA processing Smf-family protein [Streptomyces sviceus ATCC 29083]
gi|197713234|gb|EDY57268.1| DNA processing Smf-family protein [Streptomyces sviceus ATCC 29083]
Length = 385
Score = 34.0 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 19/80 (23%), Gaps = 1/80 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPV 63
E + E R+ +L +D+I
Sbjct: 288 AAEVVELVGDMGELAPDRRGPVLPRDLLDPEARRVLSALPGRREAGVDEIARGAQTTRDD 347
Query: 64 VYLVLLELDLAGRLCHHPEG 83
L EL G + H +G
Sbjct: 348 AVARLYELRALGYVERHGDG 367
>gi|108799293|ref|YP_639490.1| ArsR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119868409|ref|YP_938361.1| ArsR family transcriptional regulator [Mycobacterium sp. KMS]
gi|126434950|ref|YP_001070641.1| ArsR family transcriptional regulator [Mycobacterium sp. JLS]
gi|108769712|gb|ABG08434.1| transcriptional regulator, ArsR family [Mycobacterium sp. MCS]
gi|119694498|gb|ABL91571.1| transcriptional regulator, ArsR family [Mycobacterium sp. KMS]
gi|126234750|gb|ABN98150.1| transcriptional regulator, ArsR family [Mycobacterium sp. JLS]
Length = 122
Score = 34.0 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L+ P ++++ I V + L+ AG +
Sbjct: 18 ADPVRRAIVARLSRGPATVNELAAPFDITKQAVSRHISVLEQAGLVTR 65
>gi|213964619|ref|ZP_03392819.1| regulatory protein, IclR [Corynebacterium amycolatum SK46]
gi|213952812|gb|EEB64194.1| regulatory protein, IclR [Corynebacterium amycolatum SK46]
Length = 241
Score = 34.0 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
I +S+ P + ++ TG+ + + L++ + P+G+
Sbjct: 24 ILKSVAETPRTLAELCEDTGLPRATAHRLATALEVHRLVTRTPDGR 69
>gi|221067750|ref|ZP_03543855.1| transcriptional regulator, IclR family [Comamonas testosteroni
KF-1]
gi|220712773|gb|EED68141.1| transcriptional regulator, IclR family [Comamonas testosteroni
KF-1]
Length = 242
Score = 34.0 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+++ + R L + + + ++ T + V +L L+ G
Sbjct: 8 ESVADENAAPGGVAAVDRALSVLSAFQDGDAALSLAELAERTRLYKSTVLRLLASLEHGG 67
Query: 76 RLCHHPEGKVSL 87
+ +G+ ++
Sbjct: 68 WVQRQDDGRYAV 79
>gi|33152875|ref|NP_874228.1| DNA processing chain A [Haemophilus ducreyi 35000HP]
gi|33149100|gb|AAP96617.1| smf protein [Haemophilus ducreyi 35000HP]
Length = 380
Score = 34.0 bits (77), Expect = 7.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ +I Q+++ PI IDD+ T I ++ + LL L+L G + G V
Sbjct: 321 PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYV 376
>gi|295688213|ref|YP_003591906.1| AsnC family transcriptional regulator [Caulobacter segnis ATCC
21756]
gi|295430116|gb|ADG09288.1| transcriptional regulator, AsnC family [Caulobacter segnis ATCC
21756]
Length = 165
Score = 34.0 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 30 EYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
E +I + + + + +I G+ + + + L+ AG +
Sbjct: 3 EQLDAVDAKILDLIQHDAGLSVAEIAERVGLSSSPCWRRIKRLEDAGVIQR 53
>gi|257055697|ref|YP_003133529.1| transcriptional regulator, DeoR family [Saccharomonospora viridis
DSM 43017]
gi|256585569|gb|ACU96702.1| transcriptional regulator, DeoR family [Saccharomonospora viridis
DSM 43017]
Length = 261
Score = 34.0 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83
+HIDD++ G+ A V L EL + G
Sbjct: 18 ESVHIDDLVRELGVSAATVRRDLDELAEQQLIIRTRGG 55
>gi|291444379|ref|ZP_06583769.1| MarR-family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
gi|291347326|gb|EFE74230.1| MarR-family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
Length = 146
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + R+ L+ P+ + I E V ++ L+ G +
Sbjct: 28 EEYDRAAAEHSLTGAQARVLGLLSLEPLPMRKIAVRLKCEPSNVTGIIDRLEARGLVERR 87
Query: 81 P 81
P
Sbjct: 88 P 88
>gi|226308893|ref|YP_002768853.1| ArsR family transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|226188010|dbj|BAH36114.1| putative ArsR family transcriptional regulator [Rhodococcus
erythropolis PR4]
Length = 112
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI L+ P ++++ I + + L+ AG +
Sbjct: 17 ADPVRRRIIARLSTGPQTVNELAEPFEITKQAISKHIQVLEAAGLVTR 64
>gi|148826367|ref|YP_001291120.1| 2-isopropylmalate synthase [Haemophilus influenzae PittEE]
gi|229846043|ref|ZP_04466155.1| 2-isopropylmalate synthase [Haemophilus influenzae 7P49H1]
gi|148716527|gb|ABQ98737.1| 2-isopropylmalate synthase [Haemophilus influenzae PittEE]
gi|229811047|gb|EEP46764.1| 2-isopropylmalate synthase [Haemophilus influenzae 7P49H1]
Length = 373
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|118468087|ref|YP_886812.1| AsnC family transcriptional regulator [Mycobacterium smegmatis
str. MC2 155]
gi|118169374|gb|ABK70270.1| AsnC-family protein transcriptional regulator [Mycobacterium
smegmatis str. MC2 155]
Length = 158
Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 33 QCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
RI ++L+ P + + TG+ V+ L L+ G L
Sbjct: 9 DDIDARILRALSADPRATVVGLAEATGLARNTVHARLARLEAEGALRS 56
>gi|91785994|ref|YP_546946.1| hypothetical protein Bpro_0081 [Polaromonas sp. JS666]
gi|91695219|gb|ABE42048.1| Tetratricopeptide TPR_4 [Polaromonas sp. JS666]
Length = 408
Score = 33.7 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 1/80 (1%)
Query: 1 MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGI 59
+V P ++ E+ + L++ + G
Sbjct: 299 LVKPLAAIEATERGFILKPLAGRDVAVLAPPIDGEQASLVALLSDGAAWSTSALALALGA 358
Query: 60 EAPVVYLVLLELDLAGRLCH 79
V L +L+ GR+
Sbjct: 359 SQRTVQRALADLEADGRVRS 378
>gi|309785745|ref|ZP_07680376.1| SMF family protein [Shigella dysenteriae 1617]
gi|308926865|gb|EFP72341.1| SMF family protein [Shigella dysenteriae 1617]
Length = 349
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 268 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESIRIERLASCTGLTI 322
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 323 EQISVWLNRAEEEGRVIRLGEGHY 346
>gi|226229202|ref|YP_002763308.1| MarR family transcriptional regulator [Gemmatimonas aurantiaca
T-27]
gi|226092393|dbj|BAH40838.1| MarR family transcriptional regulator [Gemmatimonas aurantiaca
T-27]
Length = 203
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 13 SQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLEL 71
++ T + +P + + +L P+H ++ G + ++ L
Sbjct: 19 QRAATMAATRVEDAVHPFGLSASQYGVLDTLQQRGPVHQQELAEALGRSKAQMTAIIDAL 78
Query: 72 DLAGRLCH 79
+ G +
Sbjct: 79 ESRGLVRR 86
>gi|145630078|ref|ZP_01785860.1| hypothetical protein CGSHi22421_08503 [Haemophilus influenzae
R3021]
gi|260581936|ref|ZP_05849732.1| smf protein [Haemophilus influenzae NT127]
gi|144984359|gb|EDJ91782.1| hypothetical protein CGSHi22421_08503 [Haemophilus influenzae
R3021]
gi|260095129|gb|EEW79021.1| smf protein [Haemophilus influenzae NT127]
Length = 373
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|16264121|ref|NP_436913.1| putative transcriptional regulator protein [Sinorhizobium
meliloti 1021]
gi|15140246|emb|CAC48773.1| putative transcriptional regulator protein [Sinorhizobium
meliloti 1021]
Length = 239
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 45 NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMH 90
P+ + DI G + L+ L AG + P+G+ LT+
Sbjct: 23 PEPLRLVDIARQLGEARGAAHQRLVTLVEAGWIEQTPDGRYRLTLR 68
>gi|16272923|ref|NP_439148.1| DNA processing chain A [Haemophilus influenzae Rd KW20]
gi|260580076|ref|ZP_05847906.1| smf protein [Haemophilus influenzae RdAW]
gi|1169419|sp|P43862|SMF_HAEIN RecName: Full=Protein smf; AltName: Full=DNA-processing chain A
gi|609332|gb|AAA70111.1| DprA [Haemophilus influenzae]
gi|1574014|gb|AAC22646.1| DNA processing chain A (dprA) [Haemophilus influenzae Rd KW20]
gi|260093360|gb|EEW77293.1| smf protein [Haemophilus influenzae RdAW]
Length = 373
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|229843956|ref|ZP_04464097.1| hypothetical protein CGSHi6P18H1_05941 [Haemophilus influenzae
6P18H1]
gi|229812950|gb|EEP48638.1| hypothetical protein CGSHi6P18H1_05941 [Haemophilus influenzae
6P18H1]
Length = 373
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|126440787|ref|YP_001060147.1| PadR family transcriptional regulator [Burkholderia pseudomallei
668]
gi|134280299|ref|ZP_01767010.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
305]
gi|237813538|ref|YP_002897989.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
MSHR346]
gi|126220280|gb|ABN83786.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
668]
gi|134248306|gb|EBA48389.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
305]
gi|237506381|gb|ACQ98699.1| transcriptional regulator, PadR family [Burkholderia pseudomallei
MSHR346]
Length = 148
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 52 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 93
>gi|15608848|ref|NP_216226.1| hypothetical protein Rv1710 [Mycobacterium tuberculosis H37Rv]
gi|15841170|ref|NP_336207.1| hypothetical protein MT1751 [Mycobacterium tuberculosis CDC1551]
gi|31792897|ref|NP_855390.1| hypothetical protein Mb1737 [Mycobacterium bovis AF2122/97]
gi|121637618|ref|YP_977841.1| hypothetical protein BCG_1749 [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661508|ref|YP_001283031.1| hypothetical protein MRA_1720 [Mycobacterium tuberculosis H37Ra]
gi|148822916|ref|YP_001287670.1| hypothetical protein TBFG_11725 [Mycobacterium tuberculosis F11]
gi|167967186|ref|ZP_02549463.1| hypothetical protein MtubH3_03742 [Mycobacterium tuberculosis
H37Ra]
gi|215411358|ref|ZP_03420166.1| hypothetical protein Mtub9_08562 [Mycobacterium tuberculosis
94_M4241A]
gi|215427034|ref|ZP_03424953.1| hypothetical protein MtubT9_11862 [Mycobacterium tuberculosis
T92]
gi|215430603|ref|ZP_03428522.1| hypothetical protein MtubE_08013 [Mycobacterium tuberculosis
EAS054]
gi|215445896|ref|ZP_03432648.1| hypothetical protein MtubT_08141 [Mycobacterium tuberculosis T85]
gi|218753418|ref|ZP_03532214.1| hypothetical protein MtubG1_08259 [Mycobacterium tuberculosis GM
1503]
gi|219557634|ref|ZP_03536710.1| hypothetical protein MtubT1_10187 [Mycobacterium tuberculosis
T17]
gi|224990093|ref|YP_002644780.1| hypothetical protein JTY_1724 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253799251|ref|YP_003032252.1| hypothetical protein TBMG_02285 [Mycobacterium tuberculosis KZN
1435]
gi|254231906|ref|ZP_04925233.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254364549|ref|ZP_04980595.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254550721|ref|ZP_05141168.1| hypothetical protein Mtube_09729 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260186663|ref|ZP_05764137.1| hypothetical protein MtubCP_11641 [Mycobacterium tuberculosis
CPHL_A]
gi|260200773|ref|ZP_05768264.1| hypothetical protein MtubT4_11807 [Mycobacterium tuberculosis
T46]
gi|260204980|ref|ZP_05772471.1| hypothetical protein MtubK8_11830 [Mycobacterium tuberculosis
K85]
gi|289443168|ref|ZP_06432912.1| segregation and condensation protein B [Mycobacterium
tuberculosis T46]
gi|289447325|ref|ZP_06437069.1| segregation and condensation protein B [Mycobacterium
tuberculosis CPHL_A]
gi|289569761|ref|ZP_06449988.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574378|ref|ZP_06454605.1| segregation and condensation protein B [Mycobacterium
tuberculosis K85]
gi|289750267|ref|ZP_06509645.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289753801|ref|ZP_06513179.1| conserved hypothetical protein [Mycobacterium tuberculosis
EAS054]
gi|289757819|ref|ZP_06517197.1| segregation and condensation protein B [Mycobacterium
tuberculosis T85]
gi|289761866|ref|ZP_06521244.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|294993180|ref|ZP_06798871.1| segregation and condensation protein B [Mycobacterium
tuberculosis 210]
gi|297634263|ref|ZP_06952043.1| segregation and condensation protein B [Mycobacterium
tuberculosis KZN 4207]
gi|297731250|ref|ZP_06960368.1| segregation and condensation protein B [Mycobacterium
tuberculosis KZN R506]
gi|298525208|ref|ZP_07012617.1| segregation and condensation protein B [Mycobacterium
tuberculosis 94_M4241A]
gi|306775896|ref|ZP_07414233.1| hypothetical protein TMAG_01543 [Mycobacterium tuberculosis
SUMu001]
gi|306972005|ref|ZP_07484666.1| hypothetical protein TMJG_03141 [Mycobacterium tuberculosis
SUMu010]
gi|307079717|ref|ZP_07488887.1| hypothetical protein TMKG_02216 [Mycobacterium tuberculosis
SUMu011]
gi|307084295|ref|ZP_07493408.1| hypothetical protein TMLG_00693 [Mycobacterium tuberculosis
SUMu012]
gi|313658582|ref|ZP_07815462.1| segregation and condensation protein B [Mycobacterium
tuberculosis KZN V2475]
gi|2326753|emb|CAB10967.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13881391|gb|AAK46021.1| segregation and condensation protein B [Mycobacterium
tuberculosis CDC1551]
gi|31618488|emb|CAD94440.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493265|emb|CAL71736.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124600965|gb|EAY59975.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150063|gb|EBA42108.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148505660|gb|ABQ73469.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
gi|148721443|gb|ABR06068.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773206|dbj|BAH26012.1| hypothetical protein JTY_1724 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253320754|gb|ACT25357.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416087|gb|EFD13327.1| segregation and condensation protein B [Mycobacterium
tuberculosis T46]
gi|289420283|gb|EFD17484.1| segregation and condensation protein B [Mycobacterium
tuberculosis CPHL_A]
gi|289538809|gb|EFD43387.1| segregation and condensation protein B [Mycobacterium
tuberculosis K85]
gi|289543515|gb|EFD47163.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289690854|gb|EFD58283.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694388|gb|EFD61817.1| conserved hypothetical protein [Mycobacterium tuberculosis
EAS054]
gi|289709372|gb|EFD73388.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289713383|gb|EFD77395.1| segregation and condensation protein B [Mycobacterium
tuberculosis T85]
gi|298495002|gb|EFI30296.1| segregation and condensation protein B [Mycobacterium
tuberculosis 94_M4241A]
gi|308215646|gb|EFO75045.1| hypothetical protein TMAG_01543 [Mycobacterium tuberculosis
SUMu001]
gi|308358525|gb|EFP47376.1| hypothetical protein TMJG_03141 [Mycobacterium tuberculosis
SUMu010]
gi|308362464|gb|EFP51315.1| hypothetical protein TMKG_02216 [Mycobacterium tuberculosis
SUMu011]
gi|308366084|gb|EFP54935.1| hypothetical protein TMLG_00693 [Mycobacterium tuberculosis
SUMu012]
gi|323719801|gb|EGB28915.1| hypothetical protein TMMG_00961 [Mycobacterium tuberculosis
CDC1551A]
gi|328459003|gb|AEB04426.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 231
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 15 SDTNHTKNINITHYPEYTQCER-VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + + I P + R+ ++L + P+ D + T V L
Sbjct: 6 PEHDPSYGIPDIAEPAELDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQL 65
Query: 71 L--DLAGR 76
+ +L GR
Sbjct: 66 MADELTGR 73
>gi|317507186|ref|ZP_07964941.1| arsR family bacterial regulatory protein [Segniliparus rugosus
ATCC BAA-974]
gi|316254522|gb|EFV13837.1| arsR family bacterial regulatory protein [Segniliparus rugosus
ATCC BAA-974]
Length = 138
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
T RVR+ +L + ++++ H G A V L +L +A +
Sbjct: 29 TDATRVRVLWALVDRECSVNELAEHVGKPASSVSQHLAKLRMARLVK 75
>gi|302554632|ref|ZP_07306974.1| two-component transcriptional regulator [Streptomyces
viridochromogenes DSM 40736]
gi|302472250|gb|EFL35343.1| two-component transcriptional regulator [Streptomyces
viridochromogenes DSM 40736]
Length = 226
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q E + ++ H P + R + + + P+ +I TG+
Sbjct: 134 QAEVDRIFGALSAPSEPDLPKGHSPTTAELVRQALMHA--DGPLSAQEIAERTGVSRQTA 191
Query: 65 YLVLLELDLAGRLC 78
L L+ GR
Sbjct: 192 QRYLKLLERTGRAR 205
>gi|327311305|ref|YP_004338202.1| hypothetical protein TUZN_1417 [Thermoproteus uzoniensis 768-20]
gi|326947784|gb|AEA12890.1| hypothetical protein TUZN_1417 [Thermoproteus uzoniensis 768-20]
Length = 157
Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 53 IIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
I G V L EL+ AG + G V
Sbjct: 27 IARGVGAPLASVLAALDELERAGLIER-AGGHV 58
>gi|317025371|ref|XP_001388947.2| hypothetical protein ANI_1_666014 [Aspergillus niger CBS 513.88]
Length = 1099
Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTG 58
+ E S + N T P + + +L +DI + TG
Sbjct: 68 EAEAPSPSPPLQAEPSSCPNPTLEPPPSNNIVSPVLDALGTLGDSPENDIAYRTG 122
>gi|320105606|ref|YP_004181196.1| ROK family protein [Terriglobus saanensis SP1PR4]
gi|319924127|gb|ADV81202.1| ROK family protein [Terriglobus saanensis SP1PR4]
Length = 434
Score = 33.7 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 17 TNHTKNINITHYPEYTQCER---------VRIKQSLN-NVPIHIDDIIHHTGIEAPVVYL 66
N ++ T P TQ R + Q L + P D++ +G+ AP V
Sbjct: 25 ENPSRMATGTFNPPETQPSRPAHLRFANCRTLLQLLRVHGPCSKADLVRSSGLSAPTVSS 84
Query: 67 VLLELDLAGRLCHHPEG 83
+ +++ G + EG
Sbjct: 85 AIAQIEALGLVETLGEG 101
>gi|89053203|ref|YP_508654.1| ArsR family transcriptional regulator [Jannaschia sp. CCS1]
gi|88862752|gb|ABD53629.1| transcriptional regulator, ArsR family [Jannaschia sp. CCS1]
Length = 121
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 22 NINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
+ + + R +I L + P+H I + P V L L+ AG +
Sbjct: 2 SSPDKVFEALSSTTRRKILAYLRDRPLHAGAIADRFEMSKPAVSKHLSILESAGLIWR 59
>gi|309973515|gb|ADO96716.1| DNA processing chain A [Haemophilus influenzae R2846]
Length = 373
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|302036528|ref|YP_003796850.1| putative ATP-dependent DNA helicase Lhr [Candidatus Nitrospira
defluvii]
gi|300604592|emb|CBK40924.1| putative ATP-dependent DNA helicase Lhr [Candidatus Nitrospira
defluvii]
Length = 1459
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 10 FFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL-NNVPIHIDDIIHHTGIEAPVVYLVL 68
F T ++ T E + + + + P ++ + V
Sbjct: 979 LFPDARIDPATGPVDSTEQVEQEEVLNRVVLGWMESIGPTTAGELSQTLHLSESDVQSAF 1038
Query: 69 LELDLAGRLCHHPEGKVS 86
L L+ G L G+ S
Sbjct: 1039 LRLESQGHLLR---GRFS 1053
>gi|316997081|dbj|BAJ52669.1| putative transcriptional regulator [Streptomyces sp. TA-0256]
Length = 167
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 44 NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE----GKVSLTMHLPSP 94
P+ + +G+ + + V+ L+ AG + P+ KV + + P
Sbjct: 52 GPEPVTAGRLAEVSGLTSGAITGVINRLEKAGLVERQPDPDDRRKVIIAVRPDVP 106
>gi|311896907|dbj|BAJ29315.1| putative LuxR family transcriptional regulator [Kitasatospora
setae KM-6054]
Length = 323
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 32 TQCERVRIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLEL 71
+ + Q++ + P H +D++ H G+ V+ L EL
Sbjct: 7 LTAQATEVYQAMLDHPAHGVDELSAHCGLSPAEVHSALDEL 47
>gi|297153956|gb|ADI03668.1| regulatory protein DeoR [Streptomyces bingchenggensis BCW-1]
Length = 376
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
++ + + LLEL+ GR+ G V
Sbjct: 27 ELAARLNVSRATIRRDLLELEAEGRVTRVRGGAV 60
>gi|297192342|ref|ZP_06909740.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297151307|gb|EFH31079.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 354
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 32 TQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE 82
+ ++ L P + TGI A V L L+ G + P
Sbjct: 7 LDAVQEQVYVCLLRAPANDATAVAARTGIAAEEVIPALARLEAEGLVTRRPG 58
>gi|239940945|ref|ZP_04692882.1| MarR family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
Length = 143
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + R+ L+ P+ + I E V ++ L+ G +
Sbjct: 25 EEYDRAAAEHSLTGAQARVLGLLSLEPLPMRKIAVRLKCEPSNVTGIIDRLEARGLVERR 84
Query: 81 P 81
P
Sbjct: 85 P 85
>gi|326903325|gb|EGE50258.1| chromosome segregation and condensation protein ScpB
[Mycobacterium tuberculosis W-148]
Length = 227
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 15 SDTNHTKNINITHYPEYTQCER-VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + + I P + R+ ++L + P+ D + T V L
Sbjct: 2 PEHDPSYGIPDIAEPAELDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQL 61
Query: 71 L--DLAGR 76
+ +L GR
Sbjct: 62 MADELTGR 69
>gi|15840240|ref|NP_335277.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
CDC1551]
gi|254231139|ref|ZP_04924466.1| hypothetical protein TBCG_00817 [Mycobacterium tuberculosis C]
gi|13880398|gb|AAK45091.1| transcriptional regulator, ArsR family [Mycobacterium
tuberculosis CDC1551]
gi|124600198|gb|EAY59208.1| hypothetical protein TBCG_00817 [Mycobacterium tuberculosis C]
Length = 132
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ G AP V L +L +A +
Sbjct: 28 ADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVR 74
>gi|326917422|ref|XP_003204998.1| PREDICTED: protein spire homolog 1-like [Meleagris gallopavo]
Length = 638
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 9 NFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNV----PIHIDDIIHHTGIEAPVV 64
+F S+ N + P + RI + + P+ D+I + + +
Sbjct: 229 DFIRSRPPLNPASARKLKPTPPRPRSLHERILEEIKAERKLRPVSPDEI-RRSRLAMRPL 287
Query: 65 YL 66
+
Sbjct: 288 SM 289
>gi|306779714|ref|ZP_07418051.1| hypothetical protein TMBG_00253 [Mycobacterium tuberculosis
SUMu002]
gi|306784448|ref|ZP_07422770.1| hypothetical protein TMCG_03411 [Mycobacterium tuberculosis
SUMu003]
gi|306788814|ref|ZP_07427136.1| hypothetical protein TMDG_03428 [Mycobacterium tuberculosis
SUMu004]
gi|306793150|ref|ZP_07431452.1| hypothetical protein TMEG_01609 [Mycobacterium tuberculosis
SUMu005]
gi|306797529|ref|ZP_07435831.1| hypothetical protein TMFG_00796 [Mycobacterium tuberculosis
SUMu006]
gi|306803410|ref|ZP_07440078.1| hypothetical protein TMHG_00890 [Mycobacterium tuberculosis
SUMu008]
gi|306807991|ref|ZP_07444659.1| hypothetical protein TMGG_00258 [Mycobacterium tuberculosis
SUMu007]
gi|306967809|ref|ZP_07480470.1| hypothetical protein TMIG_01962 [Mycobacterium tuberculosis
SUMu009]
gi|308327364|gb|EFP16215.1| hypothetical protein TMBG_00253 [Mycobacterium tuberculosis
SUMu002]
gi|308330807|gb|EFP19658.1| hypothetical protein TMCG_03411 [Mycobacterium tuberculosis
SUMu003]
gi|308334630|gb|EFP23481.1| hypothetical protein TMDG_03428 [Mycobacterium tuberculosis
SUMu004]
gi|308338417|gb|EFP27268.1| hypothetical protein TMEG_01609 [Mycobacterium tuberculosis
SUMu005]
gi|308342140|gb|EFP30991.1| hypothetical protein TMFG_00796 [Mycobacterium tuberculosis
SUMu006]
gi|308345611|gb|EFP34462.1| hypothetical protein TMGG_00258 [Mycobacterium tuberculosis
SUMu007]
gi|308349927|gb|EFP38778.1| hypothetical protein TMHG_00890 [Mycobacterium tuberculosis
SUMu008]
gi|308354548|gb|EFP43399.1| hypothetical protein TMIG_01962 [Mycobacterium tuberculosis
SUMu009]
Length = 231
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 15 SDTNHTKNINITHYPEYTQCER-VRIKQSLN---NVPIHIDDIIHHTGIEAPVVYLVLLE 70
+ + + I P + R+ ++L + P+ D + T V L
Sbjct: 6 PEHDPSYGIPDIAEPAELDADELKRVLEALLLVIDTPVTADALAAATEQPIYRVAAKLQL 65
Query: 71 L--DLAGR 76
+ +L GR
Sbjct: 66 MADELTGR 73
>gi|264677917|ref|YP_003277824.1| transcriptional regulator, IclR family [Comamonas testosteroni
CNB-2]
gi|262208430|gb|ACY32528.1| transcriptional regulator, IclR family [Comamonas testosteroni
CNB-2]
Length = 242
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 21 KNINITHYPEYTQCERVRIKQSL-----NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAG 75
+++ + R L + + + ++ T + V +L L+ G
Sbjct: 8 ESVADENAAPGGVAAVDRALSVLSAFQDGDAALSLAELAERTRLYKSTVLRLLASLEHGG 67
Query: 76 RLCHHPEGKVSL 87
+ +G+ ++
Sbjct: 68 WVQRQDDGRYAV 79
>gi|320010968|gb|ADW05818.1| regulatory protein MarR [Streptomyces flavogriseus ATCC 33331]
Length = 144
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 21 KNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHH 80
+ + + R+ L+ P+ + + E + ++ L+L G +
Sbjct: 26 EEYDRAAATHALTGAQARVLGLLSLQPMPMRKVARKLKCEPSNITGIVDRLELRGLVERR 85
Query: 81 P 81
P
Sbjct: 86 P 86
>gi|317046314|ref|YP_004113962.1| DeoR family transcriptional regulator [Pantoea sp. At-9b]
gi|316947931|gb|ADU67406.1| transcriptional regulator, DeoR family [Pantoea sp. At-9b]
Length = 258
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
+ + +I GI ++EL+ G G V++ +P
Sbjct: 20 VSTERVIKELGISRETARRDIIELEAQGVARRVHGGLVAVDSQPEAP 66
>gi|298346457|ref|YP_003719144.1| DNA-binding/uptake protein [Mobiluncus curtisii ATCC 43063]
gi|298236518|gb|ADI67650.1| DNA-binding/uptake protein [Mobiluncus curtisii ATCC 43063]
Length = 462
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELD 72
+ T I + V++ L+ ++ + G+ V L ++
Sbjct: 382 SPQRDSTGQIPAPSLFAGLSSDGVKVIDVLSKTAWKSLEQVSRAAGLGTRTVQSELGLME 441
Query: 73 LAGRLCHHPEGKVSL 87
L G++ + L
Sbjct: 442 LDGKVETRKG-RYRL 455
>gi|254472715|ref|ZP_05086114.1| ArsR family transcriptional regulatory protein [Pseudovibrio sp.
JE062]
gi|211958179|gb|EEA93380.1| ArsR family transcriptional regulatory protein [Pseudovibrio sp.
JE062]
Length = 102
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L + ++++ + P V L L+ AG +
Sbjct: 6 ADPTRRAILTRLASGDASVNELAEPFRMSQPAVSKHLKVLERAGLVER 53
>gi|168464280|ref|ZP_02698183.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|200388648|ref|ZP_03215260.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|195633056|gb|EDX51510.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|199605746|gb|EDZ04291.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 255
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ + L++LD G + G V+L P+
Sbjct: 20 VTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGG-VALRRFEPA 64
>gi|82778697|ref|YP_405046.1| putative DNA processing protein [Shigella dysenteriae Sd197]
gi|81242845|gb|ABB63555.1| putative DNA processing protein [Shigella dysenteriae Sd197]
Length = 431
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 6 IEQNFFSSQSDTNHTKNINITHYPEYTQCERVRI----KQSLNNVPIHIDDIIHHTGIEA 61
+ FS H + N P YT + ++ L I I+ + TG+
Sbjct: 350 AQPELFS-----LHEDDANYAVMPAYTPVDFYQLFVAELAILAKESIRIERLASCTGLTI 404
Query: 62 PVVYLVLLELDLAGRLCHHPEGKV 85
+ + L + GR+ EG
Sbjct: 405 EQISVWLNRAEEEGRVIRLGEGHY 428
>gi|226364122|ref|YP_002781904.1| DeoR family transcriptional regulator [Rhodococcus opacus B4]
gi|226242611|dbj|BAH52959.1| putative DeoR family transcriptional regulator [Rhodococcus
opacus B4]
Length = 255
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 49 HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSL 87
+DD+ G+ A + L +L G + G ++L
Sbjct: 24 SVDDLSAQFGVTASTIRRDLSQLTSQGLIARTYGGAIAL 62
>gi|254524531|ref|ZP_05136586.1| transcriptional regulator, ArsR family [Stenotrophomonas sp.
SKA14]
gi|219722122|gb|EED40647.1| transcriptional regulator, ArsR family [Stenotrophomonas sp.
SKA14]
Length = 119
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHL 91
R I +L P + + + P + L L+ +G + H +G++ +
Sbjct: 16 ADPTRCAIVTTLGQGPCTVSMLAEPFEMALPSLMKHLAVLERSGVVRSHKQGRIRTCELV 75
Query: 92 PS 93
P+
Sbjct: 76 PA 77
>gi|148828160|ref|YP_001292913.1| hypothetical protein CGSHiGG_08500 [Haemophilus influenzae PittGG]
gi|148719402|gb|ABR00530.1| hypothetical protein CGSHiGG_08500 [Haemophilus influenzae PittGG]
Length = 373
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|145634161|ref|ZP_01789872.1| hypothetical protein CGSHiAA_08955 [Haemophilus influenzae PittAA]
gi|145268605|gb|EDK08598.1| hypothetical protein CGSHiAA_08955 [Haemophilus influenzae PittAA]
Length = 373
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|145632370|ref|ZP_01788105.1| hypothetical protein CGSHi3655_07944 [Haemophilus influenzae 3655]
gi|144987277|gb|EDJ93807.1| hypothetical protein CGSHi3655_07944 [Haemophilus influenzae 3655]
Length = 373
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|68249570|ref|YP_248682.1| hypothetical protein NTHI1157 [Haemophilus influenzae 86-028NP]
gi|68057769|gb|AAX88022.1| Smf [Haemophilus influenzae 86-028NP]
Length = 373
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|110634540|ref|YP_674748.1| ArsR family transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110285524|gb|ABG63583.1| transcriptional regulator, ArsR family [Chelativorans sp. BNC1]
Length = 115
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R I L ++++ + P + L L+ AG +
Sbjct: 15 ADPTRRAIIARLAAGEATVNELAEPFDMSLPAISKHLKVLERAGLISR 62
>gi|302540237|ref|ZP_07292579.1| DeoR family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302457855|gb|EFL20948.1| DeoR family transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length = 263
Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 50 IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSP 94
++++ + + L L G + G +S H P P
Sbjct: 32 VEELARSLEVTPSTIRRDLALLTEQGAIARTYGGAMS-AGHTPEP 75
>gi|167895590|ref|ZP_02482992.1| transcriptional regulator, putative [Burkholderia pseudomallei
7894]
gi|167912239|ref|ZP_02499330.1| transcriptional regulator, putative [Burkholderia pseudomallei
112]
gi|167920199|ref|ZP_02507290.1| transcriptional regulator, putative [Burkholderia pseudomallei
BCC215]
Length = 129
Score = 33.7 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 IKQSLNNVPIHIDDIIHHT-GIEAPVVYLVLLELDLAGRLCH 79
I L++ P+ + ++ H G+ V+ L L+ G +
Sbjct: 32 ILALLSHEPLRFNTLLRHIEGLSQKVLSQTLKRLERDGLVAR 73
>gi|15607967|ref|NP_215342.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|31792015|ref|NP_854508.1| transcriptional regulatory protein [Mycobacterium bovis
AF2122/97]
gi|121636751|ref|YP_976974.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148660605|ref|YP_001282128.1| transcription regulator ArsR [Mycobacterium tuberculosis H37Ra]
gi|148822033|ref|YP_001286787.1| transcriptional regulator [Mycobacterium tuberculosis F11]
gi|167967515|ref|ZP_02549792.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis H37Ra]
gi|215410397|ref|ZP_03419205.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
gi|215410406|ref|ZP_03419214.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
gi|215426088|ref|ZP_03424007.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|215429678|ref|ZP_03427597.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|215444964|ref|ZP_03431716.1| transcriptional regulator [Mycobacterium tuberculosis T85]
gi|219556686|ref|ZP_03535762.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|224989222|ref|YP_002643909.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253797774|ref|YP_003030775.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|254363764|ref|ZP_04979810.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|254549799|ref|ZP_05140246.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260185720|ref|ZP_05763194.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|260199842|ref|ZP_05767333.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|260204017|ref|ZP_05771508.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289442230|ref|ZP_06431974.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289446391|ref|ZP_06436135.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289553084|ref|ZP_06442294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289568780|ref|ZP_06449007.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289573445|ref|ZP_06453672.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289749343|ref|ZP_06508721.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289752876|ref|ZP_06512254.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289756914|ref|ZP_06516292.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|294996307|ref|ZP_06801998.1| transcriptional regulator [Mycobacterium tuberculosis 210]
gi|297633339|ref|ZP_06951119.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
gi|297730323|ref|ZP_06959441.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
gi|298524322|ref|ZP_07011731.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306774950|ref|ZP_07413287.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|306782138|ref|ZP_07420475.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|306783493|ref|ZP_07421815.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|306787857|ref|ZP_07426179.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|306794852|ref|ZP_07433154.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|306796596|ref|ZP_07434898.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|306802454|ref|ZP_07439122.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
gi|306806663|ref|ZP_07443331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
gi|306966862|ref|ZP_07479523.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
gi|306971053|ref|ZP_07483714.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
gi|307078785|ref|ZP_07487955.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
gi|307083346|ref|ZP_07492459.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|313657648|ref|ZP_07814528.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
gi|2916885|emb|CAA17633.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
tuberculosis H37Rv]
gi|31617602|emb|CAD93712.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121492398|emb|CAL70866.1| Probable transcriptional regulatory protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134149278|gb|EBA41323.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|148504757|gb|ABQ72566.1| ArsR family transcriptional regulator [Mycobacterium tuberculosis
H37Ra]
gi|148720560|gb|ABR05185.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis F11]
gi|224772335|dbj|BAH25141.1| putative transcriptional regulatory protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|253319277|gb|ACT23880.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
gi|289415149|gb|EFD12389.1| transcriptional regulator [Mycobacterium tuberculosis T46]
gi|289419349|gb|EFD16550.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
gi|289437716|gb|EFD20209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|289537876|gb|EFD42454.1| transcriptional regulator [Mycobacterium tuberculosis K85]
gi|289542534|gb|EFD46182.1| transcriptional regulator [Mycobacterium tuberculosis T17]
gi|289689930|gb|EFD57359.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289693463|gb|EFD60892.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
gi|289712478|gb|EFD76490.1| transcriptional regulatory protein [Mycobacterium tuberculosis
T85]
gi|298494116|gb|EFI29410.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216504|gb|EFO75903.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
gi|308325159|gb|EFP14010.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
gi|308331714|gb|EFP20565.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
gi|308335512|gb|EFP24363.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308336857|gb|EFP25708.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308342989|gb|EFP31840.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|308346872|gb|EFP35723.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
gi|308350813|gb|EFP39664.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
gi|308355446|gb|EFP44297.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
gi|308359402|gb|EFP48253.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
gi|308363307|gb|EFP52158.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
gi|308366958|gb|EFP55809.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
gi|326904954|gb|EGE51887.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
gi|328457553|gb|AEB02976.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
Length = 130
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
RV++ SL + + ++++ G AP V L +L +A +
Sbjct: 26 ADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVR 72
>gi|301169710|emb|CBW29311.1| conserved protein [Haemophilus influenzae 10810]
Length = 373
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIH 55
+I+ + + + T + P ++ + P+ IDD+
Sbjct: 296 EIDFDQIAVPNYTPPPDPRRLVEAPS-----HPKLYSRIGYTPVSIDDLAE 341
>gi|317487339|ref|ZP_07946133.1| LOW QUALITY PROTEIN: ribonuclease R [Bilophila wadsworthia 3_1_6]
gi|316921438|gb|EFV42730.1| LOW QUALITY PROTEIN: ribonuclease R [Bilophila wadsworthia 3_1_6]
Length = 814
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNN--VPIHIDDIIHHTGIEAPV---VYL 66
+ T + + + P+ +DD+I + +
Sbjct: 24 RPGKKNARRTDDEQTFVSVPGGLDAEEVLGLMGKIRHPVRLDDLIRFLDLSRRDKKPLEN 83
Query: 67 VLLELDLAGRLCHHPEGK 84
+L L GR+ GK
Sbjct: 84 LLDALQAEGRVIRLRGGK 101
>gi|119960901|ref|YP_948850.1| transcriptional regulator protein [Arthrobacter aurescens TC1]
gi|119947760|gb|ABM06671.1| putative transcriptional regulator protein [Arthrobacter
aurescens TC1]
Length = 95
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 39 IKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHP 81
I + L + P D+ G+ ++ L EL+ AG L P
Sbjct: 19 IVERLLDGPQRYGDLQRDLGVPTNILATRLRELEAAGVLSRLP 61
>gi|311743825|ref|ZP_07717631.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
15272]
gi|311312955|gb|EFQ82866.1| ArsR family transcriptional regulator [Aeromicrobium marinum DSM
15272]
Length = 120
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 4 PQIEQNFFSSQSDTNHTKNI---NITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
P + S T + + R+ + L + P + +++ TG
Sbjct: 4 PTSSPDGPSLDHATPPDPTRLHHASHLFALLSDTTRLHLLWHLGDGPATVTELVDRTGAP 63
Query: 61 APVVYLVLLELDLAGRLCHHPEGKV 85
V L L AG + G+
Sbjct: 64 RTGVSQHLARLRRAGLVDVTRSGRF 88
>gi|257387429|ref|YP_003177202.1| MarR family transcriptional regulator [Halomicrobium mukohataei
DSM 12286]
gi|257169736|gb|ACV47495.1| transcriptional regulator, MarR family [Halomicrobium mukohataei
DSM 12286]
Length = 218
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 34 CERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
R RI + L + P ++ +I + G+ V L +L+ AG +
Sbjct: 13 ANRRRILRLLAHKPCYVTEISEYIGVSPKAVIDHLQKLEDAGLIES 58
>gi|73537784|ref|YP_298151.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134]
gi|72121121|gb|AAZ63307.1| transcriptional regulator, GntR family [Ralstonia eutropha
JMP134]
Length = 226
Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 25 ITHYPEYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
E + L+ + D ++ G++ VV VL EL+ G +
Sbjct: 15 DAMEQALDTLEEDIVFGRLHPRERLTEDALMARFGLKRHVVRQVLAELEQMGVVER 70
>gi|224582010|ref|YP_002635808.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224466537|gb|ACN44367.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322713188|gb|EFZ04759.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 255
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ + L++LD G + G V+L P+
Sbjct: 20 VTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGG-VALRRFEPA 64
>gi|161612513|ref|YP_001586478.1| hypothetical protein SPAB_00203 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161361877|gb|ABX65645.1| hypothetical protein SPAB_00203 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|322615986|gb|EFY12903.1| hypothetical protein SEEM315_21158 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620770|gb|EFY17630.1| hypothetical protein SEEM971_06986 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623879|gb|EFY20716.1| hypothetical protein SEEM973_07887 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627327|gb|EFY24118.1| hypothetical protein SEEM974_11686 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322630634|gb|EFY27398.1| hypothetical protein SEEM201_03063 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638147|gb|EFY34848.1| hypothetical protein SEEM202_05854 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640633|gb|EFY37284.1| hypothetical protein SEEM954_13555 [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645583|gb|EFY42110.1| hypothetical protein SEEM054_05034 [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648123|gb|EFY44590.1| hypothetical protein SEEM675_11887 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656845|gb|EFY53131.1| hypothetical protein SEEM965_03207 [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657445|gb|EFY53717.1| hypothetical protein SEEM19N_12875 [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663764|gb|EFY59964.1| hypothetical protein SEEM801_00564 [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666597|gb|EFY62775.1| hypothetical protein SEEM507_05189 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322672245|gb|EFY68357.1| hypothetical protein SEEM877_19692 [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676444|gb|EFY72515.1| hypothetical protein SEEM867_16743 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679464|gb|EFY75509.1| hypothetical protein SEEM180_18727 [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686208|gb|EFY82192.1| hypothetical protein SEEM600_01557 [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195084|gb|EFZ80267.1| hypothetical protein SEEM581_04419 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197589|gb|EFZ82724.1| hypothetical protein SEEM501_16128 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201141|gb|EFZ86210.1| hypothetical protein SEEM460_20159 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209537|gb|EFZ94470.1| hypothetical protein SEEM020_12915 [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323212212|gb|EFZ97036.1| hypothetical protein SEEM6152_02925 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216516|gb|EGA01242.1| hypothetical protein SEEM0077_01175 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220660|gb|EGA05108.1| hypothetical protein SEEM0047_11841 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225855|gb|EGA10075.1| hypothetical protein SEEM0055_07345 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228604|gb|EGA12733.1| hypothetical protein SEEM0052_03120 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236783|gb|EGA20859.1| hypothetical protein SEEM3312_20861 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239717|gb|EGA23764.1| hypothetical protein SEEM5258_00430 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242236|gb|EGA26265.1| hypothetical protein SEEM1156_14757 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249898|gb|EGA33794.1| hypothetical protein SEEM9199_18257 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252327|gb|EGA36178.1| hypothetical protein SEEM8282_19459 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256583|gb|EGA40313.1| hypothetical protein SEEM8283_17226 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262953|gb|EGA46503.1| hypothetical protein SEEM8284_07134 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265438|gb|EGA48934.1| hypothetical protein SEEM8285_05010 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271775|gb|EGA55193.1| hypothetical protein SEEM8287_04532 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 255
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ + L++LD G + G V+L P+
Sbjct: 20 VTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGG-VALRRFEPA 64
>gi|152967586|ref|YP_001363370.1| GntR family transcriptional regulator [Kineococcus radiotolerans
SRS30216]
gi|151362103|gb|ABS05106.1| transcriptional regulator, GntR family [Kineococcus radiotolerans
SRS30216]
Length = 239
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 46 VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
P+ ID + G+ V L+ ++ G +
Sbjct: 37 SPLSIDGLARDLGVSPTPVREALVRMESTGLVER 70
>gi|295676948|ref|YP_003605472.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002]
gi|295436791|gb|ADG15961.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002]
Length = 308
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 7 EQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLN--NVPIHIDDIIHHTGIEAPVV 64
+ + F + +D++ + +R+ +L + P+ + ++ T +
Sbjct: 20 QFSLFDASTDSHMSDTNPDPKTSIQVIERMMRLLDALAAHSDPVSLKELALRTELHPSTA 79
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHL 91
+ +L ++ + + G L M L
Sbjct: 80 HRILNDMVMCRLVDRSDPGTYRLGMRL 106
>gi|15616449|ref|NP_244755.1| hypothetical protein BH3887 [Bacillus halodurans C-125]
gi|10176512|dbj|BAB07606.1| BH3887 [Bacillus halodurans C-125]
Length = 302
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 14 QSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDL 73
++ + + + R+++ Q + P +I H G+ V+ L+ L
Sbjct: 205 PAEEESFSPLYLRTQQALSDSNRLKVLQFIAREPKPFKEIHKHLGLAKSTVHHHLITLRA 264
Query: 74 AGRLCHHPEGKVSLTMHLPSP 94
AG + H +H P
Sbjct: 265 AGLVRVH--------VHPEKP 277
>gi|289644190|ref|ZP_06476281.1| putative transcriptional regulator [Frankia symbiont of Datisca
glomerata]
gi|289505997|gb|EFD27005.1| putative transcriptional regulator [Frankia symbiont of Datisca
glomerata]
Length = 213
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ R R+ +L P + TG+ V L L+ G +
Sbjct: 8 EDPAAAEVSLDPVRARLLAAL-AEPGSATTLAARTGLTRQKVNYHLRALEQHGLVE 62
>gi|16759160|ref|NP_454777.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16763554|ref|NP_459169.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29140710|ref|NP_804052.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56412437|ref|YP_149512.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|167550638|ref|ZP_02344395.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990043|ref|ZP_02571143.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168230456|ref|ZP_02655514.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168243411|ref|ZP_02668343.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168263983|ref|ZP_02685956.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168820836|ref|ZP_02832836.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445050|ref|YP_002039399.1| DeoR family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451683|ref|YP_002044141.1| DeoR family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470219|ref|ZP_03076203.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197251561|ref|YP_002145163.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197265473|ref|ZP_03165547.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197361373|ref|YP_002141008.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198241927|ref|YP_002214120.1| DeoR family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|207855680|ref|YP_002242331.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213160904|ref|ZP_03346614.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|238911224|ref|ZP_04655061.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|25302832|pir||AB0523 probable transcription regulator STY0186 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16418665|gb|AAL19128.1| putative LysR family transcriptional regulator [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|16501450|emb|CAD01322.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136334|gb|AAO67901.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56126694|gb|AAV76200.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|194403713|gb|ACF63935.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409987|gb|ACF70206.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194456583|gb|EDX45422.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197092848|emb|CAR58274.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197215264|gb|ACH52661.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197243728|gb|EDY26348.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197936443|gb|ACH73776.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205324376|gb|EDZ12215.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205331412|gb|EDZ18176.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205335193|gb|EDZ21957.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205337472|gb|EDZ24236.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205342531|gb|EDZ29295.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347491|gb|EDZ34122.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206707483|emb|CAR31757.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261245396|emb|CBG23186.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267991846|gb|ACY86731.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301156791|emb|CBW16267.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911134|dbj|BAJ35108.1| DeoR-family transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084416|emb|CBY94209.1| Uncharacterized HTH-type transcriptional regulator ygbI
[Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321222257|gb|EFX47329.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323128484|gb|ADX15914.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326621863|gb|EGE28208.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332987116|gb|AEF06099.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 255
Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ + L++LD G + G V+L P+
Sbjct: 20 VTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGG-VALRRFEPA 64
>gi|33592257|ref|NP_879901.1| transcription regulator AsnC [Bordetella pertussis Tohama I]
gi|33571902|emb|CAE41420.1| AsnC-family transcriptional regulator [Bordetella pertussis
Tohama I]
gi|332381675|gb|AEE66522.1| transcription regulator AsnC [Bordetella pertussis CS]
Length = 162
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
P RI L + ++ + + L+ AG + G V
Sbjct: 1 MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIR----GYV 56
Query: 86 SLT 88
+L
Sbjct: 57 ALA 59
>gi|108803061|ref|YP_642998.1| GntR family transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108764304|gb|ABG03186.1| transcriptional regulator, GntR family [Rubrobacter xylanophilus
DSM 9941]
Length = 229
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 52 DIIHHTGIEAPVVYLVLLELDLAGRLCHHP--EGKVSLTMHLPS 93
DI G+ V L+ L+ G + P +V L +
Sbjct: 46 DIARELGVSRAAVRNALIRLEQEGLVKREPNRGARVRLVSEEEA 89
>gi|327194733|gb|EGE61577.1| IclR family transcriptional regulator [Rhizobium etli CNPAF512]
Length = 269
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 39 IKQSL-NNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ ++L + + + ++ H G A ++ VL L+ + P+G++
Sbjct: 32 VLEALASPEGMTLSELAKHLGQSAATMHRVLATLERRDYVEMSPDGQI 79
>gi|326330303|ref|ZP_08196613.1| transcriptional regulator, ROK family [Nocardioidaceae bacterium
Broad-1]
gi|325951840|gb|EGD43870.1| transcriptional regulator, ROK family [Nocardioidaceae bacterium
Broad-1]
Length = 391
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 34 CERVRIKQSLN-NVPIHIDDIIHHTGIEAPVVYLVLLEL 71
R ++ L + P+ ++ TG+ V ++ EL
Sbjct: 11 TNRSQVLDLLGRSAPVSRAELAQRTGLSRSTVSSIVQEL 49
>gi|86159122|ref|YP_465907.1| DNA processing protein DprA [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775633|gb|ABC82470.1| DNA protecting protein DprA [Anaeromyxobacter dehalogenans 2CP-C]
Length = 291
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 20 TKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYL 66
+ + ++L P H D++ GI
Sbjct: 218 AAPAPVQAELPALDDRGSALLRALGRRPRHADELAREAGIPVGAALA 264
>gi|73540571|ref|YP_295091.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134]
gi|72117984|gb|AAZ60247.1| transcriptional regulator, IclR family [Ralstonia eutropha
JMP134]
Length = 252
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 38 RIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
RI + L+ P+ + DI+ G+ V+ +L +L+ + +
Sbjct: 14 RILEILSMAEEPLSLADIVQEIGLPKQTVHRLLKQLESTWLVSRTAGSRY 63
>gi|114570651|ref|YP_757331.1| ArsR family transcriptional regulator [Maricaulis maris MCS10]
gi|114341113|gb|ABI66393.1| transcriptional regulator, ArsR family [Maricaulis maris MCS10]
Length = 317
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
+ R+RI L+ + + +++ G P V L L AG PEG
Sbjct: 12 AEPTRLRIIALLSRGELTVSELVSILGQSQPRVSRHLKLLTDAGLAERLPEGAY 65
>gi|33597744|ref|NP_885387.1| transcription regulator AsnC [Bordetella parapertussis 12822]
gi|33574172|emb|CAE38504.1| AsnC-family transcriptional regulator [Bordetella parapertussis]
Length = 166
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 27 HYPEYTQCERVRIKQSLNNVPIHID-DIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKV 85
P RI L + ++ + + L+ AG + G V
Sbjct: 5 MPPHALDAVDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIR----GYV 60
Query: 86 SLT 88
+L
Sbjct: 61 ALA 63
>gi|220911523|ref|YP_002486832.1| ArsR family transcriptional regulator [Arthrobacter
chlorophenolicus A6]
gi|219858401|gb|ACL38743.1| transcriptional regulator, ArsR family [Arthrobacter
chlorophenolicus A6]
Length = 210
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 1/56 (1%)
Query: 23 INITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLC 78
+ R I L P + G+ V L L+ G +
Sbjct: 8 EDPAAAEASLDPIRSAILHEL-AEPASATQLAVRVGLPRQKVNYHLKSLERHGLVE 62
>gi|304394593|ref|ZP_07376512.1| transcriptional regulator NanR [Ahrensia sp. R2A130]
gi|303293254|gb|EFL87635.1| transcriptional regulator NanR [Ahrensia sp. R2A130]
Length = 247
Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 12 SSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNV------PIHID-DIIHHTGIEAPVV 64
+ T P + R + + L + P+ + ++I G+ P V
Sbjct: 3 TDAPSKKPTATDGKKDRPSLAKGVRDYLLKLLESDEYGPGSPLPSERELIRLCGVSRPAV 62
Query: 65 YLVLLELDLAGRLCHHPEGKVSLTMHLP 92
+ L+ G + G+ ++ P
Sbjct: 63 REAMQALEARGLVEIRHGGRAKVSEPTP 90
>gi|16119611|ref|NP_396317.1| hypothetical protein Atu5385 [Agrobacterium tumefaciens str. C58]
gi|15162177|gb|AAK90758.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 393
Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 38 RIKQSLNNVPIH-IDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE---GKV 85
RI + P H + I+ TG+ AP V L +L+ G + G+V
Sbjct: 321 RIHELFQQNPFHTANQIVQVTGLSAPTVNAALADLERLGIVDEVTGRKRGRV 372
>gi|182434614|ref|YP_001822333.1| MarR family transcriptional regulator [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326775141|ref|ZP_08234406.1| regulatory protein MarR [Streptomyces cf. griseus XylebKG-1]
gi|178463130|dbj|BAG17650.1| putative MarR-family transcriptional regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326655474|gb|EGE40320.1| regulatory protein MarR [Streptomyces cf. griseus XylebKG-1]
Length = 166
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 30 EYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
I + P+ + H G+ + V L L+ AG +
Sbjct: 52 PTDVSALAAILDA--PTPLTPGALREHLGLTSGAVTACLDRLERAGHVRR 99
>gi|217978362|ref|YP_002362509.1| transcriptional regulator, ArsR family [Methylocella silvestris
BL2]
gi|217503738|gb|ACK51147.1| transcriptional regulator, ArsR family [Methylocella silvestris
BL2]
Length = 118
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 32 TQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
R + + L+ P + ++ + P V + L+ AG + G+V
Sbjct: 16 ADPARRAMVERLSRGPAPVSELARPLPMSLPSVMQHIGVLEAAGLVRSEKFGRVR 70
>gi|167644785|ref|YP_001682448.1| AsnC family transcriptional regulator [Caulobacter sp. K31]
gi|167347215|gb|ABZ69950.1| transcriptional regulator, AsnC family [Caulobacter sp. K31]
Length = 180
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 30 EYTQCERVRIKQSLNNVP-IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCH 79
E +I + + + + +I G+ + + + L+ AG +
Sbjct: 18 EQLDAVDAKILDLIQHDAGLSVAEIAERVGLSSSPCWRRIKRLEDAGVIQR 68
>gi|29828973|ref|NP_823607.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29606078|dbj|BAC70142.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 229
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 5 QIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIEAPVV 64
Q E + + H P + R + + P+ +I TG+
Sbjct: 137 QAEVDRIFGALSAGSEPGLPKGHSPTTAELVRRALVAA--EGPLSAQEIAERTGLSRQTA 194
Query: 65 YLVLLELDLAGRLC 78
L L+ GR
Sbjct: 195 QRYLKLLERTGRAT 208
>gi|329945987|ref|ZP_08293674.1| transcriptional regulator, DeoR family [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328528435|gb|EGF55413.1| transcriptional regulator, DeoR family [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 257
Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 36 RVRIKQSLNNVPI-HIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVS 86
+ +I +SL+ + ++ + T + + L EL G + G +
Sbjct: 10 QRQILKSLSTTTVMSVNALSRLTDVSGVTIRRDLAELAHKGLVTRVHGGALR 61
>gi|297158420|gb|ADI08132.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
Length = 402
Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 33 QCERVRIKQSLNNV-PIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPE-------GK 84
+ L P + TG+ P V L L+ AG + G+
Sbjct: 16 SNNERLLLARLRAEGPASRAQLARETGLSKPTVSSALAALEEAGLV-REAGRQAPPERGR 74
Query: 85 VSLTMHLPS 93
V++
Sbjct: 75 VAVLYEPDP 83
>gi|205351506|ref|YP_002225307.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205271287|emb|CAR36075.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326626534|gb|EGE32877.1| putative transcriptional regulator [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 255
Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 48 IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLPS 93
+ ++ ++ + L++LD G + G V+L P+
Sbjct: 20 VTVEQLVEAVDASPATIRRDLIKLDEQGVISRSHGG-VALRRFEPA 64
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.306 0.157 0.437
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,103,167,886
Number of Sequences: 14124377
Number of extensions: 52279271
Number of successful extensions: 434006
Number of sequences better than 10.0: 3417
Number of HSP's better than 10.0 without gapping: 2440
Number of HSP's successfully gapped in prelim test: 977
Number of HSP's that attempted gapping in prelim test: 423694
Number of HSP's gapped (non-prelim): 9501
length of query: 95
length of database: 4,842,793,630
effective HSP length: 64
effective length of query: 31
effective length of database: 3,938,833,502
effective search space: 122103838562
effective search space used: 122103838562
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.8 bits)
S2: 76 (33.7 bits)