HHsearch alignment for GI: 254780306 and conserved domain: COG0551
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].
Probab=97.33 E-value=0.00024 Score=51.71 Aligned_cols=72 Identities=22% Similarity=0.470 Sum_probs=51.8
Q ss_pred CCCEECCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 66114334677731368715776-11123434323332100122100001234420146899996699982697422773
Q gi|254780306|r 600 EDSRTCPECHTHSLSLKLSSKYG-AFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQR 678 (837)
Q Consensus 600 ~~~~~Cp~C~~g~L~~k~~gK~G-~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq~ 678 (837)
T Consensus 58 ~~~~~Cp~C~~~~~~~k~-~~~~~~f~~~~~~Pkc~~~~~~~~~~~------------~cp~c~~~~~~~k~~~~~~~~~ 124 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKK-GRFGKNFLGCSNYPKCRFTEKPKPKEK------------KCPKCGSRKLVEKKEKKKGVFL 124 (140)
T ss_pred CCCEECCCCCCCCCEEEE-CCCCCCCCEECCCCCCCCEECCCHHHH------------HCCCCCCHHHEEEEEECCCEEE
T ss_conf 477667766773402343-456763412536886610234472444------------4865686123256651363660
Q ss_pred CCCCCC
Q ss_conf 488777
Q gi|254780306|r 679 GDGKDA 684 (837)
Q Consensus 679 Ge~~kp 684 (837)
T Consensus 125 ~c~~~~ 130 (140)
T COG0551 125 ECSNKP 130 (140)
T ss_pred CCCCCH
T ss_conf 367653