HHsearch alignment for GI: 254780306 and conserved domain: COG0551

>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].
Probab=97.33  E-value=0.00024  Score=51.71  Aligned_cols=72  Identities=22%  Similarity=0.470  Sum_probs=51.8

Q ss_pred             CCCEECCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf             66114334677731368715776-11123434323332100122100001234420146899996699982697422773
Q gi|254780306|r  600 EDSRTCPECHTHSLSLKLSSKYG-AFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQR  678 (837)
Q Consensus       600 ~~~~~Cp~C~~g~L~~k~~gK~G-~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq~  678 (837)
T Consensus        58 ~~~~~Cp~C~~~~~~~k~-~~~~~~f~~~~~~Pkc~~~~~~~~~~~------------~cp~c~~~~~~~k~~~~~~~~~  124 (140)
T COG0551          58 KTGVKCPKCGKGLLVLKK-GRFGKNFLGCSNYPKCRFTEKPKPKEK------------KCPKCGSRKLVEKKEKKKGVFL  124 (140)
T ss_pred             CCCEECCCCCCCCCEEEE-CCCCCCCCEECCCCCCCCEECCCHHHH------------HCCCCCCHHHEEEEEECCCEEE
T ss_conf             477667766773402343-456763412536886610234472444------------4865686123256651363660


Q ss_pred             CCCCCC
Q ss_conf             488777
Q gi|254780306|r  679 GDGKDA  684 (837)
Q Consensus       679 Ge~~kp  684 (837)
T Consensus       125 ~c~~~~  130 (140)
T COG0551         125 ECSNKP  130 (140)
T ss_pred             CCCCCH
T ss_conf             367653