HHsearch alignment for GI: 254780306 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=835.81 Aligned_cols=506 Identities=33% Similarity=0.551 Sum_probs=418.7
Q ss_pred EEEECCHHHHHHHHHHHCCC----------C---------EEEEEECCCEECCCCCC--CCCCCC-CCCEEEEEC-----
Q ss_conf 89977904787788750899----------8---------99994251100786557--867666-744068877-----
Q gi|254780306|r 3 VIIVESPAKAKTISKYLGSN----------Y---------KVLSSFGHIRDLPAKKG--SVLPEK-EFEMIWNID----- 55 (837)
Q Consensus 3 LvIvEsP~kak~I~~~Lg~~----------y---------~V~as~GHirdLp~~~~--~v~~~~-~f~p~y~v~----- 55 (837)
T Consensus 620 L~IVESPnKARTIA~FFgrPS~R~~~~~~vYEv~~gD~vL~ItAS~GHv~DLvt~~g~hGvl~~~~~~vPvY~tIKrC~d 699 (1187)
T COG1110 620 LMIVESPNKARTIASFFGRPSVRRLGGGVVYEVAIGDLVLTITASGGHVFDLVTEPGVHGVLVKDGKYVPVYDTIKRCRD 699 (1187)
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCCEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHH
T ss_conf 89996771888999984896235547906899961875899995387168863146521056058706862788888851
Q ss_pred --------------------CCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf --------------------654899999999987099899946997025799999999975512578871699998037
Q gi|254780306|r 56 --------------------PSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAI 115 (837)
Q Consensus 56 --------------------~~~kk~~~~i~~~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~ei 115 (837)
T Consensus 700 cg~q~~~~~~~cP~Cgs~~v~d~~~~ve~lRelA~EvDeVlIgTDPDtEGEKIawDv~~~l~Py----~~nikR~eFHEV 775 (1187)
T COG1110 700 CGEQFVDSEDKCPRCGSRNVEDKTETVEALRELALEVDEILIGTDPDTEGEKIAWDVFNYLRPY----NPNVKRIEFHEV 775 (1187)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCC----CCCEEEEEEEEE
T ss_conf 5844044323598878832024077999999988652779981799876442578898762767----876047773232
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9899999986226469899999999999898740113789886414-676534226899999999999964137654400
Q gi|254780306|r 116 TKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP-GARSAGRVQSVALRLICNRENQIESFVSEEYWS 194 (837)
Q Consensus 116 T~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~-~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~ 194 (837)
T Consensus 776 TrrAIleAl~n~r~vd~nlVkAQiVRRIeDRWIGF~LS~~Lw~~F~~~nLsAGRVQTPVLGWIV~Ry~e~~~~~~--~~~ 853 (1187)
T COG1110 776 TRRAILEALKNPRDVDENLVKAQIVRRIEDRWIGFELSQKLWDVFNNKNLSAGRVQTPVLGWIVNRYEEYKEKRG--YLV 853 (1187)
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHCCC--EEE
T ss_conf 399999998390003513467776555543011426229999984766766660036640020126888764055--267
Q ss_pred EEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 12233157996542233103583303310113566677764200156301000023322246852103799999887608
Q gi|254780306|r 195 LSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLG 274 (837)
Q Consensus 195 i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg 274 (837)
T Consensus 854 ~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~v~v~~~~e~ee~~~PlPPyTTDt~L~dAs~~L~ 912 (1187)
T COG1110 854 IQLD--------LD-------------LPSGNREEVENVKRKLKLIVVEVVDVVEREEEKNPLPPYTTDTMLRDASRRLR 912 (1187)
T ss_pred EECC--------CE-------------EECCCHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 6213--------10-------------35266055665543204544898630234430489879670158999999848
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 88999999998762135567212245531475544443056899997655200112376311112556668877765247
Q gi|254780306|r 275 FSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIR 354 (837)
Q Consensus 275 ~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIr 354 (837)
T Consensus 913 lsa~~~M~iaQdLFE--------~GlITYHRTDSTrVS~~Gi~vAreyl~~~~~e~~f--~pR~Wge-----~GAHEaIR 977 (1187)
T COG1110 913 LSADETMQIAQDLFE--------GGLITYHRTDSTRVSDVGIRVAREYLRKEFGEEYF--RPRSWGE-----EGAHEAIR 977 (1187)
T ss_pred CCHHHHHHHHHHHHH--------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCC-----CCCCCCCC
T ss_conf 883489999999974--------36538860577545411178899998886233125--6776566-----77621557
Q ss_pred EEECCCCCC----------HHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCH
Q ss_conf 730234640----------0000199999999999999999985222110010013677407963999998748805885
Q gi|254780306|r 355 PNDFDFLPS----------KMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGF 424 (837)
Q Consensus 355 PT~~~~~p~----------~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~ 424 (837)
T Consensus 978 PtrPid~~eL~~~i~~G~i~~~~~Lt~~HlrvYdLIFrRFmASQm~pa~v~~~~~~i~~~~~~---~~~e~~ve~~~~G~ 1054 (1187)
T COG1110 978 PTRPIDVEELITLIEEGVIQLPIRLTKNHLRVYDLIFRRFMASQMRPAKVLKEKAEVKADGKD---VELEALVEILEDGF 1054 (1187)
T ss_pred CCCCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCE---EEEEEHHHHHCCCH
T ss_conf 899887788999997487205521208899999999999888607860689999999648631---11110134431422
Q ss_pred HHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEE
Q ss_conf 67632677763210010148864568821100110111234643101789987433210256655157899999732202
Q gi|254780306|r 425 LKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYV 504 (837)
Q Consensus 425 ~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV 504 (837)
T Consensus 1055 ~~vy~-----------~~~~p~l~~g~-l~v~~~~~~~~~kv--~lytqg~vi~~MKerGIGRPSTYAkive~L~~RgYv 1120 (1187)
T COG1110 1055 ALVYP-----------TRVLPELEKGT-LKVTEVEIRKVSKV--YLYTQGEVVEEMKERGIGRPSTYAKIVETLLRRGYV 1120 (1187)
T ss_pred HHHCC-----------CCCCCCCCCCC-EEEEEEEEEECCCC--CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 32055-----------53357667773-14333588870464--555535299999862789970799999998637739
Q ss_pred ECCCCC--EEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 214771--222011420000223366556898899999999999862601347899998676766
Q gi|254780306|r 505 IAEKRK--ILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIE 567 (837)
Q Consensus 505 ~~~~~~--l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~ 567 (837)
T Consensus 1121 ie~kg~~~lipTk~Gi~Vy~yL~~~~~~lVSEerTR~LEe~MD~vE~gk~dy~~vL~ely~ei~~ 1185 (1187)
T COG1110 1121 IESKGRKKLIPTKLGIEVYEYLSEKYKKLVSEERTRRLEEIMDKVEEGKADYQEVLKELYEEIKS 1185 (1187)
T ss_pred EEECCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98668167321411089999999850442455679999999989983644799999999999972