HHsearch alignment for GI: 254780306 and conserved domain: COG1754
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only].
Probab=100.00 E-value=0 Score=519.65 Aligned_cols=247 Identities=44% Similarity=0.791 Sum_probs=223.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 5567664102455556766114334677731368715776111234343233321001221000---0123442014689
Q gi|254780306|r 583 ILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDI---PEMKESVLLGNDL 659 (837)
Q Consensus 583 ~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~---~~~~~~~~LG~dP 659 (837)
T Consensus 4 ~~~~~L~~lv~~~~~D~s~~rt~~~~~~~~~slk~-GKyGpyl~~an~Pe~~~~~eL~~e~~~~l~~~~~~~~r~LG~DP 82 (298)
T COG1754 4 ALNKGLKPLVFPNREDASEPRTCPLCGTGELSLKL-GKYGPYLECANYPECTTPKELTLEVAENLEATPQGGPRVLGIDP 82 (298)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCCEECCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 54544565521135776557614434666156884-25433101206866547666140001222335689975236688
Q ss_pred CCCCEEEEEECCCCCEEE--ECCC-CCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 999669998269742277--3488-7776133789988425489999998615255157778987499911587652616
Q gi|254780306|r 660 ETKESVTLRSGRFGLYVQ--RGDG-KDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNH 736 (837)
Q Consensus 660 ~~G~~I~lk~GryGpYvq--~Ge~-~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe~g~~I~~~~GryGpYi~~ 736 (837)
T Consensus 83 ~tG~eI~~k~GryGPYVq~~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG~hp~sge~I~ag~GRfGPyv~k 162 (298)
T COG1754 83 ETGEEIYLKNGRYGPYVQEQLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIGKHPDSGEEISAGLGRFGPYVKK 162 (298)
T ss_pred CCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHCCCCCCCCEEEECCCCCCCCEEE
T ss_conf 88856688526777615643478888854466889888312759999998738243077988886788614665763310
Q ss_pred CCE-ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC-CCEEEEECCCCCEEEECCEEEECCCC
Q ss_conf 781-1124887751435799999999836511344344544320102678989-84699606854525367888756578
Q gi|254780306|r 737 DGA-YTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPEG-GSITVHNGRYGPYLHWKKINASLSKE 814 (837)
Q Consensus 737 ~~~-~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~~-~~i~i~~GryGpYi~~gk~Na~ipk~ 814 (837)
T Consensus 163 ~Gsd~~sL~~~dd~ftItL~rA~~liaEk~~~G~-----s~~alk~lg~~p~~g~pI~v~dGrfGpYv~~Gk~Na~Lpkg 237 (298)
T COG1754 163 RGSDYRSLKSEDDVFTITLDRALKLIAEKRSRGR-----SAAALKELGTHPEGGKPITVKDGRFGPYVKDGKTNATLPKG 237 (298)
T ss_pred CCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCC-----CHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 6842114455343266308999999974530376-----44568874458467851588447867620015303657899
Q ss_pred CCHHHCCHHHHHHHHHHHHHC
Q ss_conf 896778999999999877726
Q gi|254780306|r 815 ESPDTVDLEKALKILNIKKQK 835 (837)
Q Consensus 815 ~~~e~lt~e~a~~li~~k~~k 835 (837)
T Consensus 238 ~d~~sit~e~A~~LLaer~a~ 258 (298)
T COG1754 238 KDPASITLEEALELLAERRAK 258 (298)
T ss_pred CCCCCCCHHHHHHHHHHHCCC
T ss_conf 880106799999999974146