HHsearch alignment for GI: 254780306 and conserved domain: COG1754
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only].
Probab=99.94 E-value=2.8e-27 Score=223.88 Aligned_cols=164 Identities=24% Similarity=0.383 Sum_probs=119.6
Q ss_pred CCEECCCCCCCCEEEEEECCCCCCCCC--CCC-CCCCC-CCCCCCCCCC------CCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 611433467773136871577611123--434-32333-2100122100------0012344201468999966999826
Q gi|254780306|r 601 DSRTCPECHTHSLSLKLSSKYGAFVGC--TNY-PECKY-TRQLTSNPQD------IPEMKESVLLGNDLETKESVTLRSG 670 (837)
Q Consensus 601 ~~~~Cp~C~~g~L~~k~~gK~G~FigC--Sny-PeCk~-t~~l~~~~~~------~~~~~~~~~LG~dP~~G~~I~lk~G 670 (837)
T Consensus 77 ~LG~DP~tG--~eI~~k~GryGPYVq~~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLPR~iG~hp~sge~I~ag~G 154 (298)
T COG1754 77 VLGIDPETG--EEIYLKNGRYGPYVQEQLGDPKPKPKRASLPKGWKPETITLEKALKLLSLPRVIGKHPDSGEEISAGLG 154 (298)
T ss_pred CCCCCCCCC--CEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHCCCCCCCCEEEECCC
T ss_conf 236688888--566885267776156434788888544668898883127599999987382430779888867886146
Q ss_pred CCCCEEE-ECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCH----------HHCCCCCCCCEEEEEECCCCCEEEECCE
Q ss_conf 9742277-3488777613378998842548999999861525----------5157778987499911587652616781
Q gi|254780306|r 671 RFGLYVQ-RGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPR----------EIGIHPETQKNIIAGTGKYGYYLNHDGA 739 (837)
Q Consensus 671 ryGpYvq-~Ge~~kpkr~si~k~~~~~~itle~Al~LLsLPr----------~lG~~pe~g~~I~~~~GryGpYi~~~~~ 739 (837)
T Consensus 155 RfGPyv~k~Gs----d~~sL~~~dd~ftItL~rA~~liaEk~~~G~s~~alk~lg~~p~~g~pI~v~dGrfGpYv~~Gk~ 230 (298)
T COG1754 155 RFGPYVKKRGS----DYRSLKSEDDVFTITLDRALKLIAEKRSRGRSAAALKELGTHPEGGKPITVKDGRFGPYVKDGKT 230 (298)
T ss_pred CCCCCEEECCC----CCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 65763310684----21144553432663089999999745303764456887445846785158844786762001530
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 1124887751435799999999836511344
Q gi|254780306|r 740 YTKLESIEQVLTIDLEQAISCITEKKKIEKS 770 (837)
Q Consensus 740 ~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~ 770 (837)
T Consensus 231 Na~Lpkg~d~~sit~e~A~~LLaer~a~~~~ 261 (298)
T COG1754 231 NATLPKGKDPASITLEEALELLAERRAKGGP 261 (298)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 3657899880106799999999974146888