HHsearch alignment for GI: 254780306 and conserved domain: PRK06319

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated.
Probab=100.00  E-value=0  Score=1608.66  Aligned_cols=701  Identities=43%  Similarity=0.713  Sum_probs=622.6

Q ss_pred             CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             18997790478778875089989999425110078655786766674406887765489999999998709989994699
Q gi|254780306|r    2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDP   81 (837)
Q Consensus         2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD~   81 (837)
T Consensus         4 ~LVIVESPaKAktI~k~LG~~y~V~as~GHirdLp~~~~gvd~~~~f~p~y~~~~~k~k~i~~Lkklak~ad~V~lATDp   83 (864)
T PRK06319          4 SLIIVESPAKIKTLQKLLGEGFIFASSLGHIVDLPAKEFGIDIENDFEPDYQILPDKQEVIRKICKLAKKCDVVYLSPDP   83 (864)
T ss_pred             CEEEECCHHHHHHHHHHCCCCCEEEECCCCHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             38998480889999997398979995157031089855684757798641167877689999999998469979989889


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
Q ss_conf             70257999999999755125788716999980379899999986226469899999999999898740113789886414
Q gi|254780306|r   82 DREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP  161 (837)
Q Consensus        82 DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~  161 (837)
T Consensus        84 DREGEaIawhi~~~l~-----~~~~vkRi~F~EITk~AI~~Al~npr~id~~Lv~Aq~aRr~lDrLVG~~lSplL~~k~~  158 (864)
T PRK06319         84 DREGEAIAWHIANQLP-----KNTKIQRVSFNAITKGAVTEALKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQ  158 (864)
T ss_pred             CCCHHHHHHHHHHHCC-----CCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7152799999999738-----99982589993679999999996852027888999999999997851535499999856


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCEEEEEEEEECCEEECC-----------CCHHHH
Q ss_conf             --676534226899999999999964137654400122331579-965422331035833033-----------101135
Q gi|254780306|r  162 --GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPR-NDKFTAHLTDFNGQRIEK-----------KSISNK  227 (837)
Q Consensus       162 --~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~-~~~f~a~l~~~~~~~~~~-----------~~~~~~  227 (837)
T Consensus       159 ~~~gLSAGRVQSPaL~LIVeRE~EI~~FvP~~Yw~I~a~~~~~~~~~~F~a~l~~~~gkk~~~~~~~~~~~~e~~~i~~~  238 (864)
T PRK06319        159 RRSGISAGRVQSVALKLVVDREKAIEAFVPVEYWNIRVLLQDPKTQKTFWAHLYSVNGKKWEKEIPEGKTEDEVLLINSK  238 (864)
T ss_pred             CCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCEECCCCCCCCCCCHHCCCCCH
T ss_conf             67886744302288899999999998258864389999984177774068888501770310024433442100045889


Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-HHHHHHHCCC
Q ss_conf             666777642001563010000233222468521037999998876088899999999876213556721-2245531475
Q gi|254780306|r  228 KEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGE-IVGLITYMRT  306 (837)
Q Consensus       228 ~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~-~~GlITYpRT  306 (837)
T Consensus       239 ~~a~~i~~~l~~~~~~V~~ve~K~~k~~Pp~PFtTSTLQqeAs~klGfSakkTM~iAQ~LYEgi~l~~~g~~GlITYpRT  318 (864)
T PRK06319        239 EKADHYVELLESASYTVTRVEAKEKRRFAYPPFITSTLQQEASRHFRFSSSRTMNIAQTLYEGVDLDSEGATGLITYMRT  318 (864)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf             99999999853798499998742330489899566999999987559899999999999867655577676114752257


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             54444305689999765520011237631111255666887776524773023464000001999999999999999999
Q gi|254780306|r  307 DGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVA  386 (837)
Q Consensus       307 DS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~la  386 (837)
T Consensus       319 DS~~ls~ea~~~~r~~I~~~~g~~yl~~~~r~~~~k-k~aQdAHEAIRPT~~~~~pe~~~~~Ls~de~kLY~LI~~RflA  397 (864)
T PRK06319        319 DSVRIDPEALKQVREYIQQTFGKEYLPSSPNVYATK-KMAQDAHEAIRPTDINLTPEKLRNKLTDDQFKLYSLIWKRFVA  397 (864)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             874359999999999999876576322256746776-6766788883556755677676410799999999999999999


Q ss_pred             HHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf             85222110010013677407963999998748805885676326777632100101488645688211001101112346
Q gi|254780306|r  387 SQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTE  466 (837)
Q Consensus       387 sqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~Tk  466 (837)
T Consensus       398 Sqm~~A~~~~~~v~i~~~~---~~~F~asG~~v~f~Gw~~vy~~~~~de~~~~~~~~LP~L~~Gd~l~~~~i~~~q~~Tk  474 (864)
T PRK06319        398 SQMIPAIYDTLAIQITTNK---GIDLRATGSLLKFKGFLAVYEEKRDDEGDEEENIPLPKLHEQDVLIKEEVSAEQAFTK  474 (864)
T ss_pred             HHCCHHEEEEEEEEEECCC---CEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECEEECC
T ss_conf             7486223899999997289---7699997789986760477624357522221135688655585533245441300569


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             43101789987433210256655157899999732202214771222011420000223366556898899999999999
Q gi|254780306|r  467 PPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDE  546 (837)
Q Consensus       467 PP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~  546 (837)
T Consensus       475 PP~RYTEAsLIk~ME~~GIGRPSTyA~II~tL~~R~YV~~e~k~l~PT~lG~~V~~~L~~~f~~ivd~~fTA~mE~~LD~  554 (864)
T PRK06319        475 PLPRFTEASLVKELEKSGIGRPSTYATIMNKIQSREYTLKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMEDELEL  554 (864)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             98998889999999717999501069999989867988101988680078999999999864643485317899988999


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCC
Q ss_conf             86260134789999867676655766775566677655676641024555567661143346777313687157761112
Q gi|254780306|r  547 ISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVG  626 (837)
Q Consensus       547 Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~Fig  626 (837)
T Consensus       555 Ia~G~~~w~~vL~~F~~~f~~~l~~a~~~~~-----------~~-------~~~~~~~Cp~Cg~~~li-k~~gk~g~F~g  615 (864)
T PRK06319        555 IADNKKPWKLLLQEFWEQFLPVVVTAEKEAF-----------IP-------RIVTEIDCPKCHKGKLV-KIWAKNRYFFG  615 (864)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CC-------CCCCCCCCCCCCCCCEE-EECCCCCCEEE
T ss_conf             9738741999999999999999999986431-----------35-------55556778757887568-87146771210


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCC-CCCCCCCHHHCCHHHHH
Q ss_conf             343432333210012210000123442-0146899996699982697422773488777613-37899884254899999
Q gi|254780306|r  627 CTNYPECKYTRQLTSNPQDIPEMKESV-LLGNDLETKESVTLRSGRFGLYVQRGDGKDAKRC-SLPKTWKSDSVDYDKAM  704 (837)
Q Consensus       627 CSnyPeCk~t~~l~~~~~~~~~~~~~~-~LG~dP~~G~~I~lk~GryGpYvq~Ge~~kpkr~-si~k~~~~~~itle~Al  704 (837)
T Consensus       616 Cs~yP~C~~~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~mv~k~gr~G~F~~Cs~YP~Ck~t~~l~k~~~~-~-------  687 (864)
T PRK06319        616 CSEYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHGRFGTFLGCENYPECRGIINIHKKGEE-G-------  687 (864)
T ss_pred             CCCCCCCCCCCCHHHCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-------
T ss_conf             58997656667601104562001457878998767897011313787754316998577897466666777-8-------


Q ss_pred             HHHHCCHHH-CCCCC--CCCEEEEEECCCCC-EEEECCEECCC
Q ss_conf             986152551-57778--98749991158765-26167811124
Q gi|254780306|r  705 SLLSLPREI-GIHPE--TQKNIIAGTGKYGY-YLNHDGAYTKL  743 (837)
Q Consensus       705 ~LLsLPr~l-G~~pe--~g~~I~~~~GryGp-Yi~~~~~~~sl  743 (837)
T Consensus       688 ----~~~~~~v~cp~~~c~g~~v~r~sr~g~~Fygc~~-yP~c  725 (864)
T PRK06319        688 ----IEQEETIPCPAIGCTGHIVKRRSRFNKIFYSCSE-YPEC  725 (864)
T ss_pred             ----CCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCC-CCCC
T ss_conf             ----7656777689989898688863478984436788-9998