HHsearch alignment for GI: 254780306 and conserved domain: PRK06319
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated.
Probab=100.00 E-value=0 Score=1608.66 Aligned_cols=701 Identities=43% Similarity=0.713 Sum_probs=622.6
Q ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 18997790478778875089989999425110078655786766674406887765489999999998709989994699
Q gi|254780306|r 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDP 81 (837)
Q Consensus 2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD~ 81 (837)
T Consensus 4 ~LVIVESPaKAktI~k~LG~~y~V~as~GHirdLp~~~~gvd~~~~f~p~y~~~~~k~k~i~~Lkklak~ad~V~lATDp 83 (864)
T PRK06319 4 SLIIVESPAKIKTLQKLLGEGFIFASSLGHIVDLPAKEFGIDIENDFEPDYQILPDKQEVIRKICKLAKKCDVVYLSPDP 83 (864)
T ss_pred CEEEECCHHHHHHHHHHCCCCCEEEECCCCHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 38998480889999997398979995157031089855684757798641167877689999999998469979989889
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
Q ss_conf 70257999999999755125788716999980379899999986226469899999999999898740113789886414
Q gi|254780306|r 82 DREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP 161 (837)
Q Consensus 82 DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~ 161 (837)
T Consensus 84 DREGEaIawhi~~~l~-----~~~~vkRi~F~EITk~AI~~Al~npr~id~~Lv~Aq~aRr~lDrLVG~~lSplL~~k~~ 158 (864)
T PRK06319 84 DREGEAIAWHIANQLP-----KNTKIQRVSFNAITKGAVTEALKHPREIDMALVNAQQARRLLDRIVGYKISPILSRKLQ 158 (864)
T ss_pred CCCHHHHHHHHHHHCC-----CCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7152799999999738-----99982589993679999999996852027888999999999997851535499999856
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCEEEEEEEEECCEEECC-----------CCHHHH
Q ss_conf --676534226899999999999964137654400122331579-965422331035833033-----------101135
Q gi|254780306|r 162 --GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPR-NDKFTAHLTDFNGQRIEK-----------KSISNK 227 (837)
Q Consensus 162 --~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~-~~~f~a~l~~~~~~~~~~-----------~~~~~~ 227 (837)
T Consensus 159 ~~~gLSAGRVQSPaL~LIVeRE~EI~~FvP~~Yw~I~a~~~~~~~~~~F~a~l~~~~gkk~~~~~~~~~~~~e~~~i~~~ 238 (864)
T PRK06319 159 RRSGISAGRVQSVALKLVVDREKAIEAFVPVEYWNIRVLLQDPKTQKTFWAHLYSVNGKKWEKEIPEGKTEDEVLLINSK 238 (864)
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCEECCCCCCCCCCCHHCCCCCH
T ss_conf 67886744302288899999999998258864389999984177774068888501770310024433442100045889
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-HHHHHHHCCC
Q ss_conf 666777642001563010000233222468521037999998876088899999999876213556721-2245531475
Q gi|254780306|r 228 KEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGE-IVGLITYMRT 306 (837)
Q Consensus 228 ~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~-~~GlITYpRT 306 (837)
T Consensus 239 ~~a~~i~~~l~~~~~~V~~ve~K~~k~~Pp~PFtTSTLQqeAs~klGfSakkTM~iAQ~LYEgi~l~~~g~~GlITYpRT 318 (864)
T PRK06319 239 EKADHYVELLESASYTVTRVEAKEKRRFAYPPFITSTLQQEASRHFRFSSSRTMNIAQTLYEGVDLDSEGATGLITYMRT 318 (864)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
T ss_conf 99999999853798499998742330489899566999999987559899999999999867655577676114752257
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 54444305689999765520011237631111255666887776524773023464000001999999999999999999
Q gi|254780306|r 307 DGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVA 386 (837)
Q Consensus 307 DS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~la 386 (837)
T Consensus 319 DS~~ls~ea~~~~r~~I~~~~g~~yl~~~~r~~~~k-k~aQdAHEAIRPT~~~~~pe~~~~~Ls~de~kLY~LI~~RflA 397 (864)
T PRK06319 319 DSVRIDPEALKQVREYIQQTFGKEYLPSSPNVYATK-KMAQDAHEAIRPTDINLTPEKLRNKLTDDQFKLYSLIWKRFVA 397 (864)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 874359999999999999876576322256746776-6766788883556755677676410799999999999999999
Q ss_pred HHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 85222110010013677407963999998748805885676326777632100101488645688211001101112346
Q gi|254780306|r 387 SQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTE 466 (837)
Q Consensus 387 sqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~Tk 466 (837)
T Consensus 398 Sqm~~A~~~~~~v~i~~~~---~~~F~asG~~v~f~Gw~~vy~~~~~de~~~~~~~~LP~L~~Gd~l~~~~i~~~q~~Tk 474 (864)
T PRK06319 398 SQMIPAIYDTLAIQITTNK---GIDLRATGSLLKFKGFLAVYEEKRDDEGDEEENIPLPKLHEQDVLIKEEVSAEQAFTK 474 (864)
T ss_pred HHCCHHEEEEEEEEEECCC---CEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECEEECC
T ss_conf 7486223899999997289---7699997789986760477624357522221135688655585533245441300569
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 43101789987433210256655157899999732202214771222011420000223366556898899999999999
Q gi|254780306|r 467 PPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDE 546 (837)
Q Consensus 467 PP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~ 546 (837)
T Consensus 475 PP~RYTEAsLIk~ME~~GIGRPSTyA~II~tL~~R~YV~~e~k~l~PT~lG~~V~~~L~~~f~~ivd~~fTA~mE~~LD~ 554 (864)
T PRK06319 475 PLPRFTEASLVKELEKSGIGRPSTYATIMNKIQSREYTLKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMEDELEL 554 (864)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98998889999999717999501069999989867988101988680078999999999864643485317899988999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCC
Q ss_conf 86260134789999867676655766775566677655676641024555567661143346777313687157761112
Q gi|254780306|r 547 ISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVG 626 (837)
Q Consensus 547 Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~Fig 626 (837)
T Consensus 555 Ia~G~~~w~~vL~~F~~~f~~~l~~a~~~~~-----------~~-------~~~~~~~Cp~Cg~~~li-k~~gk~g~F~g 615 (864)
T PRK06319 555 IADNKKPWKLLLQEFWEQFLPVVVTAEKEAF-----------IP-------RIVTEIDCPKCHKGKLV-KIWAKNRYFFG 615 (864)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CC-------CCCCCCCCCCCCCCCEE-EECCCCCCEEE
T ss_conf 9738741999999999999999999986431-----------35-------55556778757887568-87146771210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCC-CCCCCCCHHHCCHHHHH
Q ss_conf 343432333210012210000123442-0146899996699982697422773488777613-37899884254899999
Q gi|254780306|r 627 CTNYPECKYTRQLTSNPQDIPEMKESV-LLGNDLETKESVTLRSGRFGLYVQRGDGKDAKRC-SLPKTWKSDSVDYDKAM 704 (837)
Q Consensus 627 CSnyPeCk~t~~l~~~~~~~~~~~~~~-~LG~dP~~G~~I~lk~GryGpYvq~Ge~~kpkr~-si~k~~~~~~itle~Al 704 (837)
T Consensus 616 Cs~yP~C~~~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~mv~k~gr~G~F~~Cs~YP~Ck~t~~l~k~~~~-~------- 687 (864)
T PRK06319 616 CSEYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHGRFGTFLGCENYPECRGIINIHKKGEE-G------- 687 (864)
T ss_pred CCCCCCCCCCCCHHHCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-------
T ss_conf 58997656667601104562001457878998767897011313787754316998577897466666777-8-------
Q ss_pred HHHHCCHHH-CCCCC--CCCEEEEEECCCCC-EEEECCEECCC
Q ss_conf 986152551-57778--98749991158765-26167811124
Q gi|254780306|r 705 SLLSLPREI-GIHPE--TQKNIIAGTGKYGY-YLNHDGAYTKL 743 (837)
Q Consensus 705 ~LLsLPr~l-G~~pe--~g~~I~~~~GryGp-Yi~~~~~~~sl 743 (837)
T Consensus 688 ----~~~~~~v~cp~~~c~g~~v~r~sr~g~~Fygc~~-yP~c 725 (864)
T PRK06319 688 ----IEQEETIPCPAIGCTGHIVKRRSRFNKIFYSCSE-YPEC 725 (864)
T ss_pred ----CCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCC-CCCC
T ss_conf ----7656777689989898688863478984436788-9998