HHsearch alignment for GI: 254780306 and conserved domain: PRK06599
>PRK06599 DNA topoisomerase I; Validated.
Probab=99.97 E-value=3.5e-31 Score=253.09 Aligned_cols=163 Identities=20% Similarity=0.314 Sum_probs=137.2
Q ss_pred CCCCCCC-EEEEEECCCCCEEEECCCCCCCCC-CCCCCCCHHHCCHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCCEE
Q ss_conf 6899996-699982697422773488777613-37899884254899999986152551577789874999115876526
Q gi|254780306|r 657 NDLETKE-SVTLRSGRFGLYVQRGDGKDAKRC-SLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYL 734 (837)
Q Consensus 657 ~dP~~G~-~I~lk~GryGpYvq~Ge~~kpkr~-si~k~~~~~~itle~Al~LLsLPr~lG~~pe~g~~I~~~~GryGpYi 734 (837)
T Consensus 599 ~cp~c~~g~l~~r~gk~G~f~~cs~yp~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~d~~-g~~v~~k~GryGpyv 676 (776)
T PRK06599 599 VCPSCKTGELSLKLGKFGAFLACSNYPECTFRKSIVSGNDN-NENEGEPKAIPNENKVLGTDKD-GVEIYLKKGPYGPYI 676 (776)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCCC-CCEEEEECCCCCCEE
T ss_conf 17878887358960586574115798666666768876564-0234566633467820242989-998999248886769
Q ss_pred EECC-------EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC-CCCEEEEECCCCCEEEECC
Q ss_conf 1678-------1112488775143579999999983651134434454432010267898-9846996068545253678
Q gi|254780306|r 735 NHDG-------AYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPE-GGSITVHNGRYGPYLHWKK 806 (837)
Q Consensus 735 ~~~~-------~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~-~~~i~i~~GryGpYi~~gk 806 (837)
T Consensus 677 q~g~~~~~~kpk~~sl~~~~~~~~itle~Al~ll~lP---------------r~lG~~p~~g~~i~~~~GryGpYvk~~~ 741 (776)
T PRK06599 677 QLGEQEGKVKPKRSPVPASLNQNDITLEIALKLLSLP---------------LKIGIHKDSGEEIMIGYGKFGPYIKYMG 741 (776)
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCC---------------HHHCCCCCCCCEEEECCCCCCCEEEECC
T ss_conf 8447778778775678899983231899999998383---------------7319997899779987778872088899
Q ss_pred EEEECCCCCCHHHCCHHHHHHHHHHHHHCC
Q ss_conf 887565788967789999999998777266
Q gi|254780306|r 807 INASLSKEESPDTVDLEKALKILNIKKQKK 836 (837)
Q Consensus 807 ~Na~ipk~~~~e~lt~e~a~~li~~k~~kk 836 (837)
T Consensus 742 ~~~sl~~~~~~~~i~l~~A~~li~~~k~~~ 771 (776)
T PRK06599 742 KFISIPKKYDFLNLSLDDAMKLIEDNKAKL 771 (776)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 887679888874358999999999887633