HHsearch alignment for GI: 254780306 and conserved domain: PRK07141
>PRK07141 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=1300.31 Aligned_cols=592 Identities=34% Similarity=0.573 Sum_probs=515.7
Q ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCC---CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 1899779047877887508998999942511007865---5786766674406887765489999999998709989994
Q gi|254780306|r 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK---KGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILA 78 (837)
Q Consensus 2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~---~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilA 78 (837)
T Consensus 4 ~LiIaEkPs~ak~Ia~~LG~~y~Vt~~~GHl~~L~~~~~~~~~~~~~~-w~p~~~~~~~kk~~~k~ik~l~k~ad~viiA 82 (622)
T PRK07141 4 KLVIVESPNKVKTISKYLGSDYNVTASVGHIAKLSKSGQFGLGIDFEN-WEPLYVLDPTKKKVIKELKKAAKKAKEVYIA 82 (622)
T ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCCCCCCHHH-CCEEEEECCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 399983879999999984939899972033541888544688877677-8675786753899999999999669999988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 69970257999999999755125788716999980379899999986226469899999999999898740113789886
Q gi|254780306|r 79 TDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQ 158 (837)
Q Consensus 79 tD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~r 158 (837)
T Consensus 83 tD~DREGE~I~~~i~~~~~-----~~~~v~R~~f~~iT~~aI~~A~~n~~~~~~~l~~A~~aR~~~D~lvG~nlSr~l~~ 157 (622)
T PRK07141 83 TDPDREGEAIGQNLVDYLK-----LKDKYKRIKYNEITKDAILEALENPTMLDQNLINAQKTRRMLDRIIGFRLSKLMKS 157 (622)
T ss_pred CCCCCCHHHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8987130599999999828-----99983799982389999999985878533105589999999999706202299999
Q ss_pred HCC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHH
Q ss_conf 414---67653422689999999999996413765440012233157996542233103583303310113566677764
Q gi|254780306|r 159 KLP---GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLIS 235 (837)
Q Consensus 159 k~~---~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~ 235 (837)
T Consensus 158 ~~~~~~~~lS~GRVQTPtL~lVveRe~eI~~F~p~~y~~i~a~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 234 (622)
T PRK07141 158 KLSNAPSNPSAGRVQSIALKLVIDREKEIEAFVPEKYFNLEAKIENS--NSLDAEYFNENNEAGDKN-WINEEEIDEIKA 234 (622)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECC--CCEEEEEECCCCCCHHHC-CCCHHHHHHHHH
T ss_conf 85477888776652228899999999999737870279999999348--733789703554203321-479999999999
Q ss_pred HH-CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 20-01563010000233222468521037999998876088899999999876213556721224553147554444305
Q gi|254780306|r 236 FV-KKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPD 314 (837)
Q Consensus 236 ~~-~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~e 314 (837)
T Consensus 235 ~~~~~~~~~V~~v~~~~~~~~~p~pf~~s~l~k~~----~~sa~~tl~iaQ~LYE~~~~----~GlITYpRTDs~~ls~~ 306 (622)
T PRK07141 235 EILKNKKLIVKKIKVSTRKDPKLTPFKQAVLYKKS----QYSSASVQSALQKLYEGYGD----GGLISYPRTDSTRLSQT 306 (622)
T ss_pred HHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCHH
T ss_conf 87237986999965245357998985168999885----77988999999999963165----86399767888536999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHC--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899997655200112376311112556668877765247730234640000--01999999999999999999852221
Q gi|254780306|r 315 ALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMK--QFLDSDQFQLYNLIWKRSVASQMASA 392 (837)
Q Consensus 315 a~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~--~~L~~de~klY~LI~~R~lasqm~~a 392 (837)
T Consensus 307 ~~~~~~~~i~~~~~~~~~~~~~k~----~~~~~~aH~AI~PT~~~~~p~~~~~~~~L~~~e~klY~LI~rrflas~~~~a 382 (622)
T PRK07141 307 FINKAKKYIEKKFGPEYVSKSIKG----FAGDQDAHEAIRPTDLELLPELAREKYDLGQIEYQIYKLIYNTTLQALMTPP 382 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999999986556552243146----6676666676157886768133124457999999999999999999637666
Q ss_pred EECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 10010013677407963999998748805885676326777632100101488645688211001101112346431017
Q gi|254780306|r 393 KFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYS 472 (837)
Q Consensus 393 ~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~ryt 472 (837)
T Consensus 383 ~~~~t~v~~~~~~----~~F~~~g~~i~~~Gw~~v~~~~--------~~~~lP~l~~g~~~~~~~~~~~~~~TkPP~ryT 450 (622)
T PRK07141 383 VRKITRYTLENDK----HIFKLSYSKVTFDGYYKVTGFP--------ELKFDPKYEIGQSIEVKEFVVEDKETKPPARYN 450 (622)
T ss_pred EEEEEEEEEEECC----EEEEEEEEEEEECCEEEECCCC--------CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCC
T ss_conf 0054899997389----8999987999987788941675--------445599888899867768898743338998869
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 89987433210256655157899999732202214771222011420000223366556898899999999999862601
Q gi|254780306|r 473 ESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKL 552 (837)
Q Consensus 473 EasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~ 552 (837)
T Consensus 451 EasLi~~Me~~gIGtpATrA~iIe~L~~R~Yv~~~~k~l~pT~~G~~l~~~L~~~~~~l~~~~~Ta~~E~~Ld~I~~G~~ 530 (622)
T PRK07141 451 DGSLIEKLDDIKVGRPSTFASTVKILKDRLYVDSESKALVPTDFGKIVLEKLIIGFPEIINEKYTAQVEEELDLIAEGKI 530 (622)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998747998520299999999757738941977746374999999999861664493789999998999985998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCC--CCCCCCCCC
Q ss_conf 347899998676766557667755666776556766410245555676611433467773136871577--611123434
Q gi|254780306|r 553 NWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKY--GAFVGCTNY 630 (837)
Q Consensus 553 ~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~--G~FigCSny 630 (837)
T Consensus 531 ~~~~~l~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~CP~Cg~-~l~~r~-~~~g~~~F~gCs~y 593 (622)
T PRK07141 531 DYKKVLEDFWSKFENTYDDASKTME------------KTI---MEPEFLGESCPDCNG-DLVYRN-NRKGDQRFIGCSNF 593 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH------------HCC---CCCCCCCCCCCCCCC-CEEEEE-CCCCCCEEEECCCC
T ss_conf 6999999999999999999987554------------314---776667998878998-225787-36889869878999
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 3233321001221
Q gi|254780306|r 631 PECKYTRQLTSNP 643 (837)
Q Consensus 631 PeCk~t~~l~~~~ 643 (837)
T Consensus 594 p~Ck~t~~~~~~~ 606 (622)
T PRK07141 594 PNCRFTRSYEDAK 606 (622)
T ss_pred CCCCCCEECCCCC
T ss_conf 8888811678887