HHsearch alignment for GI: 254780306 and conserved domain: PRK07220

>PRK07220 DNA topoisomerase I; Validated.
Probab=95.81  E-value=0.018  Score=37.64  Aligned_cols=114  Identities=17%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf             9999999999999985-222110010013677407963999998748805885676326777632100101488645688
Q gi|254780306|r  373 QFQLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANE  451 (837)
Q Consensus       373 e~klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~  451 (837)
T Consensus       198 QTPtL~lIVeRe~EI~~F~p~~Yw~i~a~~~~~--~--~~~~~~~~~~r------~-----~--d~~~a~~i~~~l--~~  258 (740)
T PRK07220        198 QSPTLALIVDREKERNAFVPTPYWEIYAELENA--G--ETFSAQHSTRR------F-----L--DKEEADRVLEKL--GK  258 (740)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC--C--CEEEEECCCCC------C-----C--CHHHHHHHHHHC--CC
T ss_conf             138899999999999847996428999999729--9--04998505677------7-----9--999999999972--69


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf             2110011011123464310178998743321025665515789999973220221
Q gi|254780306|r  452 QLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIA  506 (837)
Q Consensus       452 ~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~  506 (837)
T Consensus       259 ~~~V~~v~~k~~~~~pP~Pf~ts~Lq~~Asklg~Sa~~T-m~iAQ~LYe~GlITY  312 (740)
T PRK07220        259 KAEVKEIEKGEKTDQPPTPFNTTGFISAASSIGFSPANA-MRIAESLYTNGYISY  312 (740)
T ss_pred             CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHH-HHHHHHHHCCCCCCC
T ss_conf             848999983530148989876799999998769979999-999998742883214