HHsearch alignment for GI: 254780306 and conserved domain: PRK07220
>PRK07220 DNA topoisomerase I; Validated.
Probab=95.81 E-value=0.018 Score=37.64 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 9999999999999985-222110010013677407963999998748805885676326777632100101488645688
Q gi|254780306|r 373 QFQLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANE 451 (837)
Q Consensus 373 e~klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~ 451 (837)
T Consensus 198 QTPtL~lIVeRe~EI~~F~p~~Yw~i~a~~~~~--~--~~~~~~~~~~r------~-----~--d~~~a~~i~~~l--~~ 258 (740)
T PRK07220 198 QSPTLALIVDREKERNAFVPTPYWEIYAELENA--G--ETFSAQHSTRR------F-----L--DKEEADRVLEKL--GK 258 (740)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC--C--CEEEEECCCCC------C-----C--CHHHHHHHHHHC--CC
T ss_conf 138899999999999847996428999999729--9--04998505677------7-----9--999999999972--69
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf 2110011011123464310178998743321025665515789999973220221
Q gi|254780306|r 452 QLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIA 506 (837)
Q Consensus 452 ~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~ 506 (837)
T Consensus 259 ~~~V~~v~~k~~~~~pP~Pf~ts~Lq~~Asklg~Sa~~T-m~iAQ~LYe~GlITY 312 (740)
T PRK07220 259 KAEVKEIEKGEKTDQPPTPFNTTGFISAASSIGFSPANA-MRIAESLYTNGYISY 312 (740)
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHH-HHHHHHHHCCCCCCC
T ss_conf 848999983530148989876799999998769979999-999998742883214