HHsearch alignment for GI: 254780306 and conserved domain: PRK07561

>PRK07561 DNA topoisomerase I; Validated.
Probab=99.98  E-value=8.7e-32  Score=257.66  Aligned_cols=161  Identities=32%  Similarity=0.514  Sum_probs=145.2

Q ss_pred             CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHH----CCHHHCCCCCCCCEEEEEECCCCCEE
Q ss_conf             99996699982697422773488777613378998842548999999861----52551577789874999115876526
Q gi|254780306|r  659 LETKESVTLRSGRFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLS----LPREIGIHPETQKNIIAGTGKYGYYL  734 (837)
Q Consensus       659 P~~G~~I~lk~GryGpYvq~Ge~~kpkr~si~k~~~~~~itle~Al~LLs----LPr~lG~~pe~g~~I~~~~GryGpYi  734 (837)
T Consensus       602 ~~~~~~~~~r~gk~G~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~g~r~LG~dP~tg~~V~~k~GryGpyv  681 (878)
T PRK07561        602 DLEGLPCVVRIGRFGPYLEGEREEEPIKASLPQDITPADLDPEQVEQILKQKTEGPEKLGTHPETGEPVYLLFGPYGPYV  681 (878)
T ss_pred             CCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf             77898623664167672021058765310267655865478788877641246787323668999986899935821869


Q ss_pred             EECC--------EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC-CCCEEEEECCCCCEEEE-
Q ss_conf             1678--------1112488775143579999999983651134434454432010267898-98469960685452536-
Q gi|254780306|r  735 NHDG--------AYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPE-GGSITVHNGRYGPYLHW-  804 (837)
Q Consensus       735 ~~~~--------~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~-~~~i~i~~GryGpYi~~-  804 (837)
T Consensus       682 qlG~~~~~~~Kpk~asl~k~~~~~~itle~Al~LlsLP---------------r~lG~~pe~g~~I~a~~GrfGPY~~~d  746 (878)
T PRK07561        682 QLGDVTEENPKPKRASLPKGVKPEDVTLEMALGLLSLP---------------RLLGEHPETGGKIQAGLGRFGPYVVHD  746 (878)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC---------------HHHCCCCCCCCEEEECCCCCCCCEEEC
T ss_conf             80477766778764456899980426899999997075---------------753788789987998767877667404


Q ss_pred             ----CCEEEECCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf             ----788875657889677899999999987772
Q gi|254780306|r  805 ----KKINASLSKEESPDTVDLEKALKILNIKKQ  834 (837)
Q Consensus       805 ----gk~Na~ipk~~~~e~lt~e~a~~li~~k~~  834 (837)
T Consensus       747 g~k~g~~~~sl~~~~~~~~i~l~~Av~lia~~k~  780 (878)
T PRK07561        747 KGKGEKDYRSLKKEDDVLTVDLERALELLAMPKK  780 (878)
T ss_pred             CCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHC
T ss_conf             7766764145799887645159999999961321