HHsearch alignment for GI: 254780306 and conserved domain: PRK07726
>PRK07726 DNA topoisomerase III; Provisional.
Probab=100.00 E-value=0 Score=1173.37 Aligned_cols=598 Identities=23% Similarity=0.379 Sum_probs=490.0
Q ss_pred CCEEEECCHHHHHHHHHHHC-----------------CCCEEEEEECCCEECCCC-------------CCCCCCCCCCCE
Q ss_conf 91899779047877887508-----------------998999942511007865-------------578676667440
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLG-----------------SNYKVLSSFGHIRDLPAK-------------KGSVLPEKEFEM 50 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg-----------------~~y~V~as~GHirdLp~~-------------~~~v~~~~~f~p 50 (837)
T Consensus 1 M~LiIAEKPsvA~~iA~~l~~~k~~Gy~e~~~~~~~~~~~~vtwa~GHL~~L~~P~~y~~~~k~W~~~~LPiiP~~-f-- 77 (716)
T PRK07726 1 MKLIIAEKPDQGLALASQFKYRRKDGYLEVEANELFPNGAYCTWAIGHLTQLCNPEHYHAEWKKWSLDTLPIIPER-F-- 77 (716)
T ss_pred CEEEEEECHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEEECCCEEECCCHHHHCHHCCCCCHHHCCCCCHH-C--
T ss_conf 9799980889999999862877778737616654238985999971503211685562432065874426877532-2--
Q ss_pred EEEECCCHHHHHHHHHHHHHHCC--EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCC
Q ss_conf 68877654899999999987099--8999469970257999999999755125788716999980379899999986226
Q gi|254780306|r 51 IWNIDPSSQKHLQNIIHAVKSST--ILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPR 128 (837)
Q Consensus 51 ~y~v~~~~kk~~~~i~~~~k~a~--~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r 128 (837)
T Consensus 78 ~~~~~~~~~~q~~~ik~L~~~~dv~~ii~AtD~DREGE~I~~~I~~~~~-----~~kpvkRl~~sslT~~aI~~a~~nl~ 152 (716)
T PRK07726 78 QYEVTKSKYKQFNVVKQLLHNPQVTEIIHAGDAGREGELIVRNIINLCN-----VQKPMKRLWISSLTKQAIYQGFKNLL 152 (716)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHHHCCC
T ss_conf 2466746699999999998648999899915887334999999999728-----99974889971389999999997077
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf --46989999999999989874011378988641-----46765342268999999999999641376544001223315
Q gi|254780306|r 129 --DINLDLVNAYLARRALDYLVGFNLSPILWQKL-----PGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLET 201 (837)
Q Consensus 129 --~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~-----~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~ 201 (837)
T Consensus 153 ~~~~~~~L~~aa~aR~~~DwlvG~n~SR~~t~~~~~~g~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~a~~~~ 232 (716)
T PRK07726 153 DESDTINLYYEAYTRSCADWLVGMNASRVYSILLKKKGMNDVFSAGRVQTPTLALIVKREKEIENFKSEPFWEVFATFNI 232 (716)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 61333589999999999998717510347788876427767644551111678999999999984899643899999997
Q ss_pred CCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 79965422331035833033101135666777642001563010000233222468521037999998876088899999
Q gi|254780306|r 202 PRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTM 281 (837)
Q Consensus 202 ~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm 281 (837)
T Consensus 233 -~~~~~~~~~~~~-----~~~r~~d~~~a~~i~~~~~~~~~~V~~v~~k~k~~~PP~pf~ls~LQ~~A~~~~g~sa~~Tl 306 (716)
T PRK07726 233 -EGKKYEGKWEKD-----NESRLKDPDMANKIAAFCQGKPAVVKEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKTL 306 (716)
T ss_pred -CCEEEEEEEECC-----CCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf -891799999527-----76745899999999999648984999998424665899987789999999987298999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCC-CCCCC-CCCCCCCC--CCCCCE
Q ss_conf 99987621355672122455314755444430568999976552001----123763-11112-55666887--776524
Q gi|254780306|r 282 RIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYG----DHYLPE-KPRIY-SSKSKNAQ--EAHEAI 353 (837)
Q Consensus 282 ~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g----~~~l~~-~~r~y-~~k~k~aQ--eAHeAI 353 (837)
T Consensus 307 ~iAQ~LYE--------~glITYPRTDS~~ls~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~kv~dH~AI 378 (716)
T PRK07726 307 DITQKLYQ--------KGIVSYPRSDSNYVTQGEAATFPDILQKLSQFDEYKGLLPLPVESIMNNKRYVNEKKVTDHYAI 378 (716)
T ss_pred HHHHHHHH--------CCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 99999985--------6962006877764798999999999998535643101034421110014554574555677675
Q ss_pred EEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCC
Q ss_conf 77302346400000199999999999999999985222110010013677407963999998748805885676326777
Q gi|254780306|r 354 RPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYD 433 (837)
Q Consensus 354 rPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~ 433 (837)
T Consensus 379 iPT~~~~~~----~~Ls~dE~kiY~LI~rRfLA~f~~~a~~~~t~v~~~~~g~---~~F~~~G~~i~~~Gw~~v~~~~~- 450 (716)
T PRK07726 379 IPTEQVTNP----SKLSGDEKKIYDLIVRRLIAAHYEVAIFDYTTIVTLVDER---AEFISKGKQQIQEGWRKVIFQDD- 450 (716)
T ss_pred CCCCCCCCH----HHCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECCC---EEEEEEEEEEEECCHHHHCCCCC-
T ss_conf 774456891----5589999999999999999985850167559999995696---59999522998679798508776-
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-----------------CCCCCCCCHHHHHH
Q ss_conf 6321001014886456882110011011123464310178998743321-----------------02566551578999
Q gi|254780306|r 434 QEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEE-----------------IGIGRPSTYATILE 496 (837)
Q Consensus 434 ~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~-----------------~GIGrPSTyA~II~ 496 (837)
T Consensus 451 ----~~~e~~LP~l~~Ge~~~~~~~~~~e~~TkPP~ryTEatLl~aMe~~gk~v~d~el~~~lk~~~GIGTpATRA~IIe 526 (716)
T PRK07726 451 ----KDDETILPIVAEGEEGKVVKVKVKEGKTQPPKRYTEGQLITLMKTAGKYLENEELEKVLKKTEGLGTEATRAGIIT 526 (716)
T ss_pred ----CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf ----6543448988999987653306642015899987999999999742101387999998754568888410899999
Q ss_pred HHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99732202214771222011420000223366556898899999999999862601347899998676766557667755
Q gi|254780306|r 497 TLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLR 576 (837)
Q Consensus 497 ~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~ 576 (837)
T Consensus 527 ~L~~r~Yi~~~~k~l~pT~~G~~li~~l~~~--~l~~p~~Ta~wE~~L~~I~~G~~~~~~f~~~i~~~~~~~v~~~~~~~ 604 (716)
T PRK07726 527 MLKDRKYIDVKKNQVYATDKGKVLIEAIGDK--ILASPEMTAKWEQRLAEIGEGTASPATFMEQTKKLSAKIIEDAVEMS 604 (716)
T ss_pred HHHHCCCEEECCCEEEECHHHHHHHHHHCHH--HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9874571441098751768999999862975--43894789999999999986998999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCC
Q ss_conf 666776556766410245555676611433467773136871577611123434--3233321001
Q gi|254780306|r 577 ISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNY--PECKYTRQLT 640 (837)
Q Consensus 577 ~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSny--PeCk~t~~l~ 640 (837)
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~CP~Cg~-~v~~-----~~k~~~Cs~y~~~~C~F~i~k~ 664 (716)
T PRK07726 605 EKWDFTGLDVESIERKGSKFTTGKKVGSCKKCDG-DVID-----KGTFYGCSNYNTTQCDFTISKK 664 (716)
T ss_pred HHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC-EEEE-----CCEEEECCCCCCCCCCEEEECE
T ss_conf 3024344331110000343335771665999999-8377-----6758973799899999795134