HHsearch alignment for GI: 254780306 and conserved domain: PRK07726
>PRK07726 DNA topoisomerase III; Provisional.
Probab=90.90 E-value=0.81 Score=25.18 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 999999999999985-2221100100136774079639999987488058856763267776321001014886456882
Q gi|254780306|r 374 FQLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQ 452 (837)
Q Consensus 374 ~klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~ 452 (837)
T Consensus 202 TPtL~lIv~Re~eI~~F~p~~y~~i~a~~~~~~----~~~~~~~~~--~~~~-r~~-----d~---~~a~~i~~~~~~~~ 266 (716)
T PRK07726 202 TPTLALIVKREKEIENFKSEPFWEVFATFNIEG----KKYEGKWEK--DNES-RLK-----DP---DMANKIAAFCQGKP 266 (716)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----EEEEEEEEC--CCCC-CCC-----CH---HHHHHHHHHHCCCC
T ss_conf 167899999999998489964389999999789----179999952--7767-458-----99---99999999964898
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf 11001101112346431017899874332-1025665515789999973220221
Q gi|254780306|r 453 LIATETNASQHFTEPPPRYSESSLIKKME-EIGIGRPSTYATILETLYKRKYVIA 506 (837)
Q Consensus 453 ~~~~~~~~~~~~TkPP~rytEasLik~mE-~~GIGrPSTyA~II~~L~~R~YV~~ 506 (837)
T Consensus 267 ~~V~~v~~k~k~~~PP~pf~ls~LQ~~A~~~~g~sa~~T-l~iAQ~LYE~glITY 320 (716)
T PRK07726 267 AVVKEMKTERKEFQPPLLFNLSSLQATANKAFKFSPKKT-LDITQKLYQKGIVSY 320 (716)
T ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCEEE
T ss_conf 499999842466589998778999999998729899999-999999985696200