HHsearch alignment for GI: 254780306 and conserved domain: PRK07941

>PRK07941 DNA topoisomerase I; Validated.
Probab=100.00  E-value=0  Score=2015.43  Aligned_cols=814  Identities=36%  Similarity=0.598  Sum_probs=727.6

Q ss_pred             CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCC--------------CCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             1899779047877887508998999942511007865--------------57867666744068877654899999999
Q gi|254780306|r    2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK--------------KGSVLPEKEFEMIWNIDPSSQKHLQNIIH   67 (837)
Q Consensus         2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~--------------~~~v~~~~~f~p~y~v~~~~kk~~~~i~~   67 (837)
T Consensus        10 ~LVIVESPaKaktI~kyLG~~y~V~aS~GHIrDLp~~~~~v~~~~k~~~~~~~gvd~~~~f~p~y~v~~~kkk~v~~Lk~   89 (933)
T PRK07941         10 RLVIVESPTKARKIAPYLGSNYIVESSRGHIRDLPRAAADVPAKYKSEPWARLGVNVDADFEPLYIVSPDKKSTVAELKG   89 (933)
T ss_pred             EEEEEECCHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             49999182888899986598989996167601777775656410024530003315577850677889657999999999


Q ss_pred             HHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             98709989994699702579999999997551257887169999803798999999862264698999999999998987
Q gi|254780306|r   68 AVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYL  147 (837)
Q Consensus        68 ~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~l  147 (837)
T Consensus        90 ~~k~ad~V~lATDpDREGEaIawhl~e~lk~-----~~~vkRv~F~EITk~AI~~Al~npr~id~~LV~Aq~aRRilDrL  164 (933)
T PRK07941         90 LLKDVDELYLATDGDREGEAIAWHLLETLKP-----RVPVKRMVFHEITEPAILAAAENPRDLDIDLVDAQETRRILDRL  164 (933)
T ss_pred             HHHCCCEEEECCCCCCCCHHHHHHHHHHHCC-----CCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9965998998989972404999999998389-----98747899926899999999858300169899999999999988


Q ss_pred             HHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC------CEEEEEEEEECCEEECC
Q ss_conf             401137898864146765342268999999999999641376544001223315799------65422331035833033
Q gi|254780306|r  148 VGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRN------DKFTAHLTDFNGQRIEK  221 (837)
Q Consensus       148 vG~~lSp~L~rk~~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~------~~f~a~l~~~~~~~~~~  221 (837)
T Consensus       165 vGf~lSp~Lw~k~~~~LSAGRVQSpaLrLIVeRE~EI~~F~p~~Yw~i~a~~~~~~~~~~~~~~~f~a~l~~~~g~~~~~  244 (933)
T PRK07941        165 YGYEVSPVLWKKVAPKLSAGRVQSVATRIIVQRERERMAFRSADYWDISAELDASVSDPAAAPPTFTARLTSVDGRRVAT  244 (933)
T ss_pred             HHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEC
T ss_conf             64613699998626787563635478999998699998268855047999984255543246753589987436755301


Q ss_pred             ---------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             ---------------10113566677764200156301000023322246852103799999887608889999999987
Q gi|254780306|r  222 ---------------KSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQK  286 (837)
Q Consensus       222 ---------------~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~  286 (837)
T Consensus       245 g~dfd~~~~l~~~~~~~~~de~~A~~~~~~l~~~~~~V~~ve~K~~~r~P~pPFtTSTLQQeAsrkLgfSa~~TM~iAQ~  324 (933)
T PRK07941        245 GRDFDSLGTLRKADEVLVLDEARATALAAGLQGAQLSVASVEEKPYTRRPYAPFMTSTLQQEAGRKLRFSSERTMSIAQR  324 (933)
T ss_pred             CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             45555200002332011268999999999722796389988743435689899767999999987379699999999999


Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCHH
Q ss_conf             62135567212245531475544443056899997655200112376311112556668877765247730-23464000
Q gi|254780306|r  287 LYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPND-FDFLPSKM  365 (837)
Q Consensus       287 LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~-~~~~p~~~  365 (837)
T Consensus       325 LYE--------~GlITYmRTDS~~LS~eai~~ar~~I~~~yG~~yl~~~~r~~~~k~knaQeAHEAIRPT~~~~~tp~~l  396 (933)
T PRK07941        325 LYE--------NGYITYMRTDSTTLSESAINAARTQARQLYGEEYVAPSPRQYTRKVKNAQEAHEAIRPAGETFATPGQL  396 (933)
T ss_pred             HHH--------CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             984--------774654047876269999999999999743511268551122235567644565503463011688887


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEE-CCCEEEEEEEEEEEECCCHHHHHCCCCCCCC---CCHHH
Q ss_conf             0019999999999999999998522211001001367740-7963999998748805885676326777632---10010
Q gi|254780306|r  366 KQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATY-NDQIGHLRTTGSLLCFDGFLKVWENQYDQEK---NSEED  441 (837)
Q Consensus       366 ~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~-~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~---~~~~~  441 (837)
T Consensus       397 ~~~L~~de~kLY~LIwkRtlASqM~~A~~~~~~v~i~~~~~~~~~~~F~asG~~i~f~Gfl~vY~e~~~~~~~~~~d~~e  476 (933)
T PRK07941        397 HRQLDGDEFRLYELIWQRTVASQMADARGTTLSLRITGTAKGGEEVVFSASGRTITFPGFLKAYVETVDELAGGEADDAE  476 (933)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCHH
T ss_conf             40368889999999999988753551104799999960257774179999667999888878850346532244433212


Q ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHC
Q ss_conf             14886456882110011011123464310178998743321025665515789999973220221477122201142000
Q gi|254780306|r  442 ILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVT  521 (837)
Q Consensus       442 ~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~  521 (837)
T Consensus       477 ~~LP~l~~G~~l~~~~i~~~~~~TkPP~RYTEASLVk~MEe~GIGRPSTYAsII~tL~~R~YV~~~~~~l~Pt~~G~~V~  556 (933)
T PRK07941        477 SRLPNLTQGQRLDAVELTPDGHSTNPPARYTEASLVKALEELGIGRPSTYSSIIKTIQDRGYVHKKGSALVPSWVAFAVV  556 (933)
T ss_pred             HCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEECCCCEECCHHHHHHHH
T ss_conf             10876666871001343411257689999888999999996699987128999999874535842587657547799999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             02233665568988999999999998626013478999986767665576677556667765567664102455556766
Q gi|254780306|r  522 AFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNED  601 (837)
Q Consensus       522 ~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~  601 (837)
T Consensus       557 ~fL~~~F~~~vdy~FTa~mE~~LD~Ia~G~~~w~~~l~~Fy~~~~~~~~~~~~~-~~~l~~~~~~~~~~i-d~~--~~~~  632 (933)
T PRK07941        557 GLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFYFGGDHGVADSVAR-SGGLKKLVGVNLEGI-DAR--EVNS  632 (933)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHCCC-CHH--HCCC
T ss_conf             999998887748521689997652663596068999999864665440244543-222788765211005-765--5057


Q ss_pred             CEECCCCCCCCEEEEEECCCCCCC----CCCCCCCCCCCCCCCC---CCCC---------CCCCCCCCCCCCCCCCCCEE
Q ss_conf             114334677731368715776111----2343432333210012---2100---------00123442014689999669
Q gi|254780306|r  602 SRTCPECHTHSLSLKLSSKYGAFV----GCTNYPECKYTRQLTS---NPQD---------IPEMKESVLLGNDLETKESV  665 (837)
Q Consensus       602 ~~~Cp~C~~g~L~~k~~gK~G~Fi----gCSnyPeCk~t~~l~~---~~~~---------~~~~~~~~~LG~dP~~G~~I  665 (837)
T Consensus       633 ~~~~~~~~g~~l~~r-~gk~G~f~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~LG~dP~tg~~V  711 (933)
T PRK07941        633 IKLFDDAEGRPVYVR-VGRNGPYLERMVGTGDDGEPEPQRANLPDSLTPDELTLEVAEKLFATPQEGRELGVDPETGHEI  711 (933)
T ss_pred             CCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             656666789754786-1577664000247688886430215678666865343777888750567897223589999868


Q ss_pred             EEEECCCCCEE--EECCC-------------------CCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCCCCCEEE
Q ss_conf             99826974227--73488-------------------7776133789988425489999998615255157778987499
Q gi|254780306|r  666 TLRSGRFGLYV--QRGDG-------------------KDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNII  724 (837)
Q Consensus       666 ~lk~GryGpYv--q~Ge~-------------------~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe~g~~I~  724 (837)
T Consensus       712 ~lk~GryGpyv~~~~~e~~~~~~~~~~~~~~~~~~~~~Kpk~asl~k~~~~~~itLe~Al~LlsLPR~lG~hPe~g~~I~  791 (933)
T PRK07941        712 VAKEGRFGPYVTEVLPEPEEDGAAAKTAAKKKKKETGPKPRTGSLLRSMDLQTVTLEDALKLLSLPRVVGVDPASGEEIT  791 (933)
T ss_pred             EEECCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCEEE
T ss_conf             99417987724200477520000001101134433467877566789998020689999999708463189978998799


Q ss_pred             EEECCCCCEEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC-CCCEEEEECCCCCEEE
Q ss_conf             911587652616781112488775143579999999983651134434454432010267898-9846996068545253
Q gi|254780306|r  725 AGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPE-GGSITVHNGRYGPYLH  803 (837)
Q Consensus       725 ~~~GryGpYi~~~~~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~-~~~i~i~~GryGpYi~  803 (837)
T Consensus       792 a~~GrfGPYlk~~~~~~sL~~~~~~~~I~l~~Av~li~~~k~~~~--~~~~~~~lk~lg~~p~~~~~i~v~~GryGpYv~  869 (933)
T PRK07941        792 AQNGRYGPYLKRGTDSRSLATEEQIFTITLDEALKIYAEPKRRGR--QAAAAPPLRELGDDPVSGKPMVIKDGRFGPYVT  869 (933)
T ss_pred             ECCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHCHHHCCC--CCCCCCHHHHCCCCCCCCCCEEEECCCCCCEEE
T ss_conf             756788766640883431698887512389999999955433376--533443154448998899816994588743076


Q ss_pred             ECCEEEECCCCCCHHHCCHHHHHHHHHHHHHC
Q ss_conf             67888756578896778999999999877726
Q gi|254780306|r  804 WKKINASLSKEESPDTVDLEKALKILNIKKQK  835 (837)
Q Consensus       804 ~gk~Na~ipk~~~~e~lt~e~a~~li~~k~~k  835 (837)
T Consensus       870 ~gk~Na~lpk~~~pe~ltle~a~~Li~~k~ak  901 (933)
T PRK07941        870 DGETNASLRKGDDVESITDARASELLADRRAR  901 (933)
T ss_pred             ECCEEECCCCCCCHHHCCHHHHHHHHHHHHHC
T ss_conf             48688516998982128999999999998732