HHsearch alignment for GI: 254780306 and conserved domain: PRK07941
>PRK07941 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=2015.43 Aligned_cols=814 Identities=36% Similarity=0.598 Sum_probs=727.6
Q ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCC--------------CCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 1899779047877887508998999942511007865--------------57867666744068877654899999999
Q gi|254780306|r 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK--------------KGSVLPEKEFEMIWNIDPSSQKHLQNIIH 67 (837)
Q Consensus 2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~--------------~~~v~~~~~f~p~y~v~~~~kk~~~~i~~ 67 (837)
T Consensus 10 ~LVIVESPaKaktI~kyLG~~y~V~aS~GHIrDLp~~~~~v~~~~k~~~~~~~gvd~~~~f~p~y~v~~~kkk~v~~Lk~ 89 (933)
T PRK07941 10 RLVIVESPTKARKIAPYLGSNYIVESSRGHIRDLPRAAADVPAKYKSEPWARLGVNVDADFEPLYIVSPDKKSTVAELKG 89 (933)
T ss_pred EEEEEECCHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 49999182888899986598989996167601777775656410024530003315577850677889657999999999
Q ss_pred HHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98709989994699702579999999997551257887169999803798999999862264698999999999998987
Q gi|254780306|r 68 AVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYL 147 (837)
Q Consensus 68 ~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~l 147 (837)
T Consensus 90 ~~k~ad~V~lATDpDREGEaIawhl~e~lk~-----~~~vkRv~F~EITk~AI~~Al~npr~id~~LV~Aq~aRRilDrL 164 (933)
T PRK07941 90 LLKDVDELYLATDGDREGEAIAWHLLETLKP-----RVPVKRMVFHEITEPAILAAAENPRDLDIDLVDAQETRRILDRL 164 (933)
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHCC-----CCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9965998998989972404999999998389-----98747899926899999999858300169899999999999988
Q ss_pred HHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC------CEEEEEEEEECCEEECC
Q ss_conf 401137898864146765342268999999999999641376544001223315799------65422331035833033
Q gi|254780306|r 148 VGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRN------DKFTAHLTDFNGQRIEK 221 (837)
Q Consensus 148 vG~~lSp~L~rk~~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~------~~f~a~l~~~~~~~~~~ 221 (837)
T Consensus 165 vGf~lSp~Lw~k~~~~LSAGRVQSpaLrLIVeRE~EI~~F~p~~Yw~i~a~~~~~~~~~~~~~~~f~a~l~~~~g~~~~~ 244 (933)
T PRK07941 165 YGYEVSPVLWKKVAPKLSAGRVQSVATRIIVQRERERMAFRSADYWDISAELDASVSDPAAAPPTFTARLTSVDGRRVAT 244 (933)
T ss_pred HHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEC
T ss_conf 64613699998626787563635478999998699998268855047999984255543246753589987436755301
Q ss_pred ---------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf ---------------10113566677764200156301000023322246852103799999887608889999999987
Q gi|254780306|r 222 ---------------KSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQK 286 (837)
Q Consensus 222 ---------------~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~ 286 (837)
T Consensus 245 g~dfd~~~~l~~~~~~~~~de~~A~~~~~~l~~~~~~V~~ve~K~~~r~P~pPFtTSTLQQeAsrkLgfSa~~TM~iAQ~ 324 (933)
T PRK07941 245 GRDFDSLGTLRKADEVLVLDEARATALAAGLQGAQLSVASVEEKPYTRRPYAPFMTSTLQQEAGRKLRFSSERTMSIAQR 324 (933)
T ss_pred CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 45555200002332011268999999999722796389988743435689899767999999987379699999999999
Q ss_pred HHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCCCHH
Q ss_conf 62135567212245531475544443056899997655200112376311112556668877765247730-23464000
Q gi|254780306|r 287 LYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPND-FDFLPSKM 365 (837)
Q Consensus 287 LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~-~~~~p~~~ 365 (837)
T Consensus 325 LYE--------~GlITYmRTDS~~LS~eai~~ar~~I~~~yG~~yl~~~~r~~~~k~knaQeAHEAIRPT~~~~~tp~~l 396 (933)
T PRK07941 325 LYE--------NGYITYMRTDSTTLSESAINAARTQARQLYGEEYVAPSPRQYTRKVKNAQEAHEAIRPAGETFATPGQL 396 (933)
T ss_pred HHH--------CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 984--------774654047876269999999999999743511268551122235567644565503463011688887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEE-CCCEEEEEEEEEEEECCCHHHHHCCCCCCCC---CCHHH
Q ss_conf 0019999999999999999998522211001001367740-7963999998748805885676326777632---10010
Q gi|254780306|r 366 KQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATY-NDQIGHLRTTGSLLCFDGFLKVWENQYDQEK---NSEED 441 (837)
Q Consensus 366 ~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~-~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~---~~~~~ 441 (837)
T Consensus 397 ~~~L~~de~kLY~LIwkRtlASqM~~A~~~~~~v~i~~~~~~~~~~~F~asG~~i~f~Gfl~vY~e~~~~~~~~~~d~~e 476 (933)
T PRK07941 397 HRQLDGDEFRLYELIWQRTVASQMADARGTTLSLRITGTAKGGEEVVFSASGRTITFPGFLKAYVETVDELAGGEADDAE 476 (933)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCHH
T ss_conf 40368889999999999988753551104799999960257774179999667999888878850346532244433212
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHC
Q ss_conf 14886456882110011011123464310178998743321025665515789999973220221477122201142000
Q gi|254780306|r 442 ILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVT 521 (837)
Q Consensus 442 ~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~ 521 (837)
T Consensus 477 ~~LP~l~~G~~l~~~~i~~~~~~TkPP~RYTEASLVk~MEe~GIGRPSTYAsII~tL~~R~YV~~~~~~l~Pt~~G~~V~ 556 (933)
T PRK07941 477 SRLPNLTQGQRLDAVELTPDGHSTNPPARYTEASLVKALEELGIGRPSTYSSIIKTIQDRGYVHKKGSALVPSWVAFAVV 556 (933)
T ss_pred HCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEECCCCEECCHHHHHHHH
T ss_conf 10876666871001343411257689999888999999996699987128999999874535842587657547799999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 02233665568988999999999998626013478999986767665576677556667765567664102455556766
Q gi|254780306|r 522 AFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNED 601 (837)
Q Consensus 522 ~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~ 601 (837)
T Consensus 557 ~fL~~~F~~~vdy~FTa~mE~~LD~Ia~G~~~w~~~l~~Fy~~~~~~~~~~~~~-~~~l~~~~~~~~~~i-d~~--~~~~ 632 (933)
T PRK07941 557 GLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFYFGGDHGVADSVAR-SGGLKKLVGVNLEGI-DAR--EVNS 632 (933)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHCCC-CHH--HCCC
T ss_conf 999998887748521689997652663596068999999864665440244543-222788765211005-765--5057
Q ss_pred CEECCCCCCCCEEEEEECCCCCCC----CCCCCCCCCCCCCCCC---CCCC---------CCCCCCCCCCCCCCCCCCEE
Q ss_conf 114334677731368715776111----2343432333210012---2100---------00123442014689999669
Q gi|254780306|r 602 SRTCPECHTHSLSLKLSSKYGAFV----GCTNYPECKYTRQLTS---NPQD---------IPEMKESVLLGNDLETKESV 665 (837)
Q Consensus 602 ~~~Cp~C~~g~L~~k~~gK~G~Fi----gCSnyPeCk~t~~l~~---~~~~---------~~~~~~~~~LG~dP~~G~~I 665 (837)
T Consensus 633 ~~~~~~~~g~~l~~r-~gk~G~f~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~LG~dP~tg~~V 711 (933)
T PRK07941 633 IKLFDDAEGRPVYVR-VGRNGPYLERMVGTGDDGEPEPQRANLPDSLTPDELTLEVAEKLFATPQEGRELGVDPETGHEI 711 (933)
T ss_pred CCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 656666789754786-1577664000247688886430215678666865343777888750567897223589999868
Q ss_pred EEEECCCCCEE--EECCC-------------------CCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCCCCCEEE
Q ss_conf 99826974227--73488-------------------7776133789988425489999998615255157778987499
Q gi|254780306|r 666 TLRSGRFGLYV--QRGDG-------------------KDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNII 724 (837)
Q Consensus 666 ~lk~GryGpYv--q~Ge~-------------------~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe~g~~I~ 724 (837)
T Consensus 712 ~lk~GryGpyv~~~~~e~~~~~~~~~~~~~~~~~~~~~Kpk~asl~k~~~~~~itLe~Al~LlsLPR~lG~hPe~g~~I~ 791 (933)
T PRK07941 712 VAKEGRFGPYVTEVLPEPEEDGAAAKTAAKKKKKETGPKPRTGSLLRSMDLQTVTLEDALKLLSLPRVVGVDPASGEEIT 791 (933)
T ss_pred EEECCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCEEE
T ss_conf 99417987724200477520000001101134433467877566789998020689999999708463189978998799
Q ss_pred EEECCCCCEEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC-CCCEEEEECCCCCEEE
Q ss_conf 911587652616781112488775143579999999983651134434454432010267898-9846996068545253
Q gi|254780306|r 725 AGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPE-GGSITVHNGRYGPYLH 803 (837)
Q Consensus 725 ~~~GryGpYi~~~~~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~-~~~i~i~~GryGpYi~ 803 (837)
T Consensus 792 a~~GrfGPYlk~~~~~~sL~~~~~~~~I~l~~Av~li~~~k~~~~--~~~~~~~lk~lg~~p~~~~~i~v~~GryGpYv~ 869 (933)
T PRK07941 792 AQNGRYGPYLKRGTDSRSLATEEQIFTITLDEALKIYAEPKRRGR--QAAAAPPLRELGDDPVSGKPMVIKDGRFGPYVT 869 (933)
T ss_pred ECCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHCHHHCCC--CCCCCCHHHHCCCCCCCCCCEEEECCCCCCEEE
T ss_conf 756788766640883431698887512389999999955433376--533443154448998899816994588743076
Q ss_pred ECCEEEECCCCCCHHHCCHHHHHHHHHHHHHC
Q ss_conf 67888756578896778999999999877726
Q gi|254780306|r 804 WKKINASLSKEESPDTVDLEKALKILNIKKQK 835 (837)
Q Consensus 804 ~gk~Na~ipk~~~~e~lt~e~a~~li~~k~~k 835 (837)
T Consensus 870 ~gk~Na~lpk~~~pe~ltle~a~~Li~~k~ak 901 (933)
T PRK07941 870 DGETNASLRKGDDVESITDARASELLADRRAR 901 (933)
T ss_pred ECCEEECCCCCCCHHHCCHHHHHHHHHHHHHC
T ss_conf 48688516998982128999999999998732