HHsearch alignment for GI: 254780306 and conserved domain: PRK08174
>PRK08174 DNA topoisomerase III; Validated.
Probab=92.33 E-value=0.16 Score=30.37 Aligned_cols=123 Identities=12% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 9999999999999985-222110010013677407963999998748805885676326777632100101488645688
Q gi|254780306|r 373 QFQLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANE 451 (837)
Q Consensus 373 e~klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~ 451 (837)
T Consensus 193 QtPtL~lIveRE~EI~~F~p~~y~~i~~~~~~~~----~~f~a~~~--~~~~~~d--~~~r~-~~~~~a~~~~~~~~~~~ 263 (670)
T PRK08174 193 QTPTLALVVDRDREIANFVPVPYWAIDVSLSAGG----QTFTAQWV--PPEQYCD--DEGRC-LQQPVAQQAAQQIRQAG 263 (670)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----EEEEEEEE--CCCCCCC--HHCCC-CCHHHHHHHHHHHHCCC
T ss_conf 2466888999999998078863289999997489----15788874--2455621--22024-79999999999986489
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHC-CEEE
Q ss_conf 2110011011123464310178998743321-0256655157899999732-2022
Q gi|254780306|r 452 QLIATETNASQHFTEPPPRYSESSLIKKMEE-IGIGRPSTYATILETLYKR-KYVI 505 (837)
Q Consensus 452 ~~~~~~~~~~~~~TkPP~rytEasLik~mE~-~GIGrPSTyA~II~~L~~R-~YV~ 505 (837)
T Consensus 264 ~~~V~~v~~k~~~~~pP~Pf~tstLQ~~As~~lg~sa~~T-m~iAQ~LYE~~glIT 318 (670)
T PRK08174 264 SAQVVSVETERVREGAPLPFDLGTLQEVCSKKLGLGAQET-LDIAQALYETHKATT 318 (670)
T ss_pred CEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH-HHHHHHHHHCCCEEE
T ss_conf 7599999854542479999747999999998719888899-999999885288287