HHsearch alignment for GI: 254780306 and conserved domain: PRK08780
>PRK08780 DNA topoisomerase III; Provisional.
Probab=99.95 E-value=5.5e-27 Score=221.61 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=127.7
Q ss_pred CCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC----CCCCC--CCCC----CCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 6114334677731368715776111234343233321----00122--1000----012344201468999966999826
Q gi|254780306|r 601 DSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTR----QLTSN--PQDI----PEMKESVLLGNDLETKESVTLRSG 670 (837)
Q Consensus 601 ~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~----~l~~~--~~~~----~~~~~~~~LG~dP~~G~~I~lk~G 670 (837)
T Consensus 590 ~lg~dp~~g~~-v~~k-~GryGpyvq~g~~~~~~kpk~~sl~~~~~~~~i~le~Al~ll~lPr~lG~--~~g~~i~~~~G 665 (783)
T PRK08780 590 VLGTDPKSGKE-VSAR-IGRFGPMVQIGTVDDEEKPRFASLRPGQSIYSISLEEALELFKMPRALGE--DKGQDVSVGIG 665 (783)
T ss_pred CCCCCCCCCCE-EEEE-ECCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHCC--CCCCEEEECCC
T ss_conf 04889888970-5998-33777767514787566986331799999132789999998705242089--99977997768
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHC------CHHHCCCCCCCCEEEEEECCCCCEEEECCEECCCC
Q ss_conf 974227734887776133789988425489999998615------25515777898749991158765261678111248
Q gi|254780306|r 671 RFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSL------PREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLE 744 (837)
Q Consensus 671 ryGpYvq~Ge~~kpkr~si~k~~~~~~itle~Al~LLsL------Pr~lG~~pe~g~~I~~~~GryGpYi~~~~~~~sl~ 744 (837)
T Consensus 666 r~GpYv~~~~----~~~sl~~~~~~~~i~l~~A~~li~~~~~~~~~~~~~~~~--~~~i~v~~GryGpYv~~gk~na~ip 739 (783)
T PRK08780 666 RFGPFARRGS----TYVSLKKEDDPYTIDLARAVFLIEEKEEIARNRVIKDFE--GSDIQVLNGRFGPYISDGKLNGKIP 739 (783)
T ss_pred CCCCCEEECC----EEECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCC--CCCEEEECCCCCCEEEECCEEEECC
T ss_conf 8775475798----883479998764527999999997032026566666689--9974881268864077798995058
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8775143579999999983651134434454
Q gi|254780306|r 745 SIEQVLTIDLEQAISCITEKKKIEKSSRKNS 775 (837)
Q Consensus 745 ~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~ 775 (837)
T Consensus 740 k~~~~~~ltle~a~~li~e~~~~~~~~~~~~ 770 (783)
T PRK08780 740 KDREPASLTLEEVQQLLADTGKPVRKGFGAK 770 (783)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9998000899999999972788877788888