HHsearch alignment for GI: 254780306 and conserved domain: PRK08938

>PRK08938 DNA topoisomerase I; Validated.
Probab=100.00  E-value=0  Score=1494.97  Aligned_cols=676  Identities=38%  Similarity=0.656  Sum_probs=605.8

Q ss_pred             CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf             18997790478778875089989999425110078655786766674406887765489999999998709989994699
Q gi|254780306|r    2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDP   81 (837)
Q Consensus         2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD~   81 (837)
T Consensus         5 ~LvIvEsPskAk~I~~~LG~~y~V~as~GHi~dLp~~~~g~d~~~~~~p~y~~~~~k~~~i~~lk~~~k~ad~iilAtD~   84 (692)
T PRK08938          5 NLVIVESPAKAKTIEKYLGRKYKVVASMGHIRDLPKSQMGVDIENNYEPKYITIRGKGPVIKELKKEAKKAKKVYLASDP   84 (692)
T ss_pred             CEEEECCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             19998885999999998394979996335174468633685767788536773575689999999998289989989898


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
Q ss_conf             70257999999999755125788716999980379899999986226469899999999999898740113789886414
Q gi|254780306|r   82 DREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP  161 (837)
Q Consensus        82 DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~  161 (837)
T Consensus        85 DREGE~Ia~~i~~~l~~----~~~~~~Ri~f~eiT~~aI~~A~~n~r~~d~~l~~A~~aR~~lD~lvG~nlS~~l~~k~~  160 (692)
T PRK08938         85 DREGEAIAWHLAHILNL----DPSDKNRVVFNEITKDAVKESFKHPRAIDMDLVDAQQARRILDRLVGYSISPILWKKVK  160 (692)
T ss_pred             CCCCCHHHHHHHHHHCC----CCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf             71502999999998677----88875378995689999999996766035878999999998748865410889998533


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             67653422689999999999996413765440012233157996542233103583303310113566677764200156
Q gi|254780306|r  162 GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKAT  241 (837)
Q Consensus       162 ~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  241 (837)
T Consensus       161 ~~lSaGRVQTPtL~lIveRe~eI~~F~p~~y~~i~a~~~~-~~~~f~a~~~~~~~~~---~~~~~~~~a~~i~~~l~~~~  236 (692)
T PRK08938        161 KGLSAGRVQSVALKLIIDRENEIKAFKPEEYWTIDGEFKK-GKKKFQASFYGVDGKK---FKLKNNDDVKEVLAKLDGDD  236 (692)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CCCEEEEEEEECCCCC---CCCCCHHHHHHHHHHHCCCC
T ss_conf             7877661300789999998999983688433899999980-8941899998348872---57799999999998622898


Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-HHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             3010000233222468521037999998876088899999999876213556721-224553147554444305689999
Q gi|254780306|r  242 YSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGE-IVGLITYMRTDGVHMSPDALEAVR  320 (837)
Q Consensus       242 ~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~-~~GlITYpRTDS~~ls~ea~~~~r  320 (837)
T Consensus       237 ~~V~~v~~k~~k~~PP~Pf~ts~LQq~As~~lg~sa~kTm~iAQ~LYEg~~~~~~~~~glITYpRTDS~~ls~~~~~~~~  316 (692)
T PRK08938        237 FEVTKVTKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIDLGKQGTVGLITYMRTDSTRISPVAQNEAA  316 (692)
T ss_pred             EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf             69999875034248989975799999999873999899999999987334567656556331147666403899999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEE
Q ss_conf             76552001123763111125566688777652477302346400000199999999999999999985222110010013
Q gi|254780306|r  321 RSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVN  400 (837)
Q Consensus       321 ~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~  400 (837)
T Consensus       317 ~~i~~~~g~~~~~~~~~~~~~-~~~~qdAHeAI~PT~~~~~p~~~~~~Ls~de~klY~LI~~RflAs~m~~a~~~~t~v~  395 (692)
T PRK08938        317 QYITERYGAEYSKTHKRKVKN-KSGAQDAHEAIRPTSVMRTPESLKKYLTKDQLRLYKLIWERFVASQMTPAVLDTVKVD  395 (692)
T ss_pred             HHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEE
T ss_conf             999987768651215655667-8899688258878665668656541189999999999999999985751116899999


Q ss_pred             EEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             67740796399999874880588567632677763210010148864568821100110111234643101789987433
Q gi|254780306|r  401 IIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM  480 (837)
Q Consensus       401 i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~m  480 (837)
T Consensus       396 ~~~~~----~~F~a~g~~i~~~Gw~~vy~~~~~~~-~~~~~~~LP~l~~G~~~~~~~~~~~~~~TkPP~ryTEasLIk~M  470 (692)
T PRK08938        396 LEQNG----VQFRANGSQVKFDGFMKVYVESKDDN-DSEKNKMLPDLEEGDTVKSTDIEPEQHFTQPPPRYTEARLVKTL  470 (692)
T ss_pred             EEECC----EEEEEEEEEEEECCCEEEECCCCCCC-CCHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             99599----39999889996331145652445654-31233128656799877666766335426899888999999999


Q ss_pred             HHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             21025665515789999973220221477122201142000022336655689889999999999986260134789999
Q gi|254780306|r  481 EEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHE  560 (837)
Q Consensus       481 E~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~  560 (837)
T Consensus       471 E~~GIGrpsT~A~II~~L~~R~YV~~~~k~l~pT~~G~~v~~~L~~~fp~i~~~~~Ta~~E~~Ld~Ia~G~~~~~~~l~~  550 (692)
T PRK08938        471 EENGIGRPSTYAPTLDTIQKRYYVKLENKRFVPTELGEIVNELIVEFFPEIVDVEFTANMEGKLDEVEEGKEQWVKVIDE  550 (692)
T ss_pred             HHCCCCCCCCHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             85799971658999999985687994297774536999999999874524349868899999999997697429999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86767665576677556667765567664102455556766114334677731368715776111234343233321001
Q gi|254780306|r  561 FWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLT  640 (837)
Q Consensus       561 Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~  640 (837)
T Consensus       551 f~~~f~~~l~~a~~~~~------------~~~---~~~~~~~~~Cp~Cg~~l~-~k-~gr~G~F~~Cs~yP~Ck~t~~~~  613 (692)
T PRK08938        551 FYKPFEKELEKAEEEME------------KIE---IKDEPAGFDCEVCGSPMV-IK-MGRYGKFYACSNFPDCRNTKAIV  613 (692)
T ss_pred             HHHHHHHHHHHHHHHHH------------HCC---CCCCCCCCCCCCCCCCCE-EE-ECCCCCEEECCCCCCCCCCCCCC
T ss_conf             99999999999987665------------333---566667898867886006-88-15788433478998888867766


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCC-EEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCC
Q ss_conf             22100001234420146899996-69998269742-27734887776133789988425489999998615255157778
Q gi|254780306|r  641 SNPQDIPEMKESVLLGNDLETKE-SVTLRSGRFGL-YVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPE  718 (837)
Q Consensus       641 ~~~~~~~~~~~~~~LG~dP~~G~-~I~lk~GryGp-Yvq~Ge~~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe  718 (837)
T Consensus       614 ~~-----------~~~~CP~C~~g~l~~r~sk~g~~f~gCs~yp~C~~~~~~~------------------p-~~~~Cp~  663 (692)
T PRK08938        614 KE-----------IGVTCPKCHKGQVIERKSKKNRIFYGCDRYPECDFVSWDK------------------P-IGRDCPK  663 (692)
T ss_pred             CC-----------CCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCEECCCC------------------C-CCCCCCC
T ss_conf             55-----------6882959999745755147898777489899898316788------------------7-4884999


Q ss_pred             CCCEEEEEECCCCCEEEECC
Q ss_conf             98749991158765261678
Q gi|254780306|r  719 TQKNIIAGTGKYGYYLNHDG  738 (837)
Q Consensus       719 ~g~~I~~~~GryGpYi~~~~  738 (837)
T Consensus       664 Cg~~~~~~~~~~g~~~~C~n  683 (692)
T PRK08938        664 CGHYLVEKKVKKGKQVQCSN  683 (692)
T ss_pred             CCCCCEEEECCCCCEEECCC
T ss_conf             99604268557888797899