HHsearch alignment for GI: 254780306 and conserved domain: PRK08938
>PRK08938 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=1494.97 Aligned_cols=676 Identities=38% Similarity=0.656 Sum_probs=605.8
Q ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 18997790478778875089989999425110078655786766674406887765489999999998709989994699
Q gi|254780306|r 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDP 81 (837)
Q Consensus 2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD~ 81 (837)
T Consensus 5 ~LvIvEsPskAk~I~~~LG~~y~V~as~GHi~dLp~~~~g~d~~~~~~p~y~~~~~k~~~i~~lk~~~k~ad~iilAtD~ 84 (692)
T PRK08938 5 NLVIVESPAKAKTIEKYLGRKYKVVASMGHIRDLPKSQMGVDIENNYEPKYITIRGKGPVIKELKKEAKKAKKVYLASDP 84 (692)
T ss_pred CEEEECCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 19998885999999998394979996335174468633685767788536773575689999999998289989989898
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
Q ss_conf 70257999999999755125788716999980379899999986226469899999999999898740113789886414
Q gi|254780306|r 82 DREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP 161 (837)
Q Consensus 82 DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~ 161 (837)
T Consensus 85 DREGE~Ia~~i~~~l~~----~~~~~~Ri~f~eiT~~aI~~A~~n~r~~d~~l~~A~~aR~~lD~lvG~nlS~~l~~k~~ 160 (692)
T PRK08938 85 DREGEAIAWHLAHILNL----DPSDKNRVVFNEITKDAVKESFKHPRAIDMDLVDAQQARRILDRLVGYSISPILWKKVK 160 (692)
T ss_pred CCCCCHHHHHHHHHHCC----CCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 71502999999998677----88875378995689999999996766035878999999998748865410889998533
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 67653422689999999999996413765440012233157996542233103583303310113566677764200156
Q gi|254780306|r 162 GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKAT 241 (837)
Q Consensus 162 ~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 241 (837)
T Consensus 161 ~~lSaGRVQTPtL~lIveRe~eI~~F~p~~y~~i~a~~~~-~~~~f~a~~~~~~~~~---~~~~~~~~a~~i~~~l~~~~ 236 (692)
T PRK08938 161 KGLSAGRVQSVALKLIIDRENEIKAFKPEEYWTIDGEFKK-GKKKFQASFYGVDGKK---FKLKNNDDVKEVLAKLDGDD 236 (692)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CCCEEEEEEEECCCCC---CCCCCHHHHHHHHHHHCCCC
T ss_conf 7877661300789999998999983688433899999980-8941899998348872---57799999999998622898
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-HHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 3010000233222468521037999998876088899999999876213556721-224553147554444305689999
Q gi|254780306|r 242 YSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGE-IVGLITYMRTDGVHMSPDALEAVR 320 (837)
Q Consensus 242 ~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~-~~GlITYpRTDS~~ls~ea~~~~r 320 (837)
T Consensus 237 ~~V~~v~~k~~k~~PP~Pf~ts~LQq~As~~lg~sa~kTm~iAQ~LYEg~~~~~~~~~glITYpRTDS~~ls~~~~~~~~ 316 (692)
T PRK08938 237 FEVTKVTKKERKRNPALPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGIDLGKQGTVGLITYMRTDSTRISPVAQNEAA 316 (692)
T ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 69999875034248989975799999999873999899999999987334567656556331147666403899999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEE
Q ss_conf 76552001123763111125566688777652477302346400000199999999999999999985222110010013
Q gi|254780306|r 321 RSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVN 400 (837)
Q Consensus 321 ~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~ 400 (837)
T Consensus 317 ~~i~~~~g~~~~~~~~~~~~~-~~~~qdAHeAI~PT~~~~~p~~~~~~Ls~de~klY~LI~~RflAs~m~~a~~~~t~v~ 395 (692)
T PRK08938 317 QYITERYGAEYSKTHKRKVKN-KSGAQDAHEAIRPTSVMRTPESLKKYLTKDQLRLYKLIWERFVASQMTPAVLDTVKVD 395 (692)
T ss_pred HHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEE
T ss_conf 999987768651215655667-8899688258878665668656541189999999999999999985751116899999
Q ss_pred EEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 67740796399999874880588567632677763210010148864568821100110111234643101789987433
Q gi|254780306|r 401 IIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM 480 (837)
Q Consensus 401 i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~m 480 (837)
T Consensus 396 ~~~~~----~~F~a~g~~i~~~Gw~~vy~~~~~~~-~~~~~~~LP~l~~G~~~~~~~~~~~~~~TkPP~ryTEasLIk~M 470 (692)
T PRK08938 396 LEQNG----VQFRANGSQVKFDGFMKVYVESKDDN-DSEKNKMLPDLEEGDTVKSTDIEPEQHFTQPPPRYTEARLVKTL 470 (692)
T ss_pred EEECC----EEEEEEEEEEEECCCEEEECCCCCCC-CCHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 99599----39999889996331145652445654-31233128656799877666766335426899888999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 21025665515789999973220221477122201142000022336655689889999999999986260134789999
Q gi|254780306|r 481 EEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHE 560 (837)
Q Consensus 481 E~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~ 560 (837)
T Consensus 471 E~~GIGrpsT~A~II~~L~~R~YV~~~~k~l~pT~~G~~v~~~L~~~fp~i~~~~~Ta~~E~~Ld~Ia~G~~~~~~~l~~ 550 (692)
T PRK08938 471 EENGIGRPSTYAPTLDTIQKRYYVKLENKRFVPTELGEIVNELIVEFFPEIVDVEFTANMEGKLDEVEEGKEQWVKVIDE 550 (692)
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 85799971658999999985687994297774536999999999874524349868899999999997697429999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86767665576677556667765567664102455556766114334677731368715776111234343233321001
Q gi|254780306|r 561 FWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLT 640 (837)
Q Consensus 561 Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~ 640 (837)
T Consensus 551 f~~~f~~~l~~a~~~~~------------~~~---~~~~~~~~~Cp~Cg~~l~-~k-~gr~G~F~~Cs~yP~Ck~t~~~~ 613 (692)
T PRK08938 551 FYKPFEKELEKAEEEME------------KIE---IKDEPAGFDCEVCGSPMV-IK-MGRYGKFYACSNFPDCRNTKAIV 613 (692)
T ss_pred HHHHHHHHHHHHHHHHH------------HCC---CCCCCCCCCCCCCCCCCE-EE-ECCCCCEEECCCCCCCCCCCCCC
T ss_conf 99999999999987665------------333---566667898867886006-88-15788433478998888867766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCC-EEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCC
Q ss_conf 22100001234420146899996-69998269742-27734887776133789988425489999998615255157778
Q gi|254780306|r 641 SNPQDIPEMKESVLLGNDLETKE-SVTLRSGRFGL-YVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPE 718 (837)
Q Consensus 641 ~~~~~~~~~~~~~~LG~dP~~G~-~I~lk~GryGp-Yvq~Ge~~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe 718 (837)
T Consensus 614 ~~-----------~~~~CP~C~~g~l~~r~sk~g~~f~gCs~yp~C~~~~~~~------------------p-~~~~Cp~ 663 (692)
T PRK08938 614 KE-----------IGVTCPKCHKGQVIERKSKKNRIFYGCDRYPECDFVSWDK------------------P-IGRDCPK 663 (692)
T ss_pred CC-----------CCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCEECCCC------------------C-CCCCCCC
T ss_conf 55-----------6882959999745755147898777489899898316788------------------7-4884999
Q ss_pred CCCEEEEEECCCCCEEEECC
Q ss_conf 98749991158765261678
Q gi|254780306|r 719 TQKNIIAGTGKYGYYLNHDG 738 (837)
Q Consensus 719 ~g~~I~~~~GryGpYi~~~~ 738 (837)
T Consensus 664 Cg~~~~~~~~~~g~~~~C~n 683 (692)
T PRK08938 664 CGHYLVEKKVKKGKQVQCSN 683 (692)
T ss_pred CCCCCEEEECCCCCEEECCC
T ss_conf 99604268557888797899