HHsearch alignment for GI: 254780306 and conserved domain: PRK09001
>PRK09001 DNA topoisomerase I; Validated.
Probab=98.76 E-value=1.5e-08 Score=83.18 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=84.4
Q ss_pred CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf 11433467773136871577611123434323332100122100001234420146899996699982697422773488
Q gi|254780306|r 602 SRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQRGDG 681 (837)
Q Consensus 602 ~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq~Ge~ 681 (837)
T Consensus 664 ~~~c~~c~~~md~yl-~d~~~k~~~c~n~p~c~g~~~e-~g~~~~~~~~~p~--~~C~kCg~~m~lk~GRfGkf~~Ct~- 738 (869)
T PRK09001 664 KRRCPKCGTAMDSYL-IDEKRKLHVCGNNPDCDGYEIE-EGEFKIKGYDGPI--VECDKCGSEMHLKTGRFGKYFGCTN- 738 (869)
T ss_pred CCCCCCCCCCHHHHE-ECCCCEEEECCCCCCCCCEEEC-CCCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCCCC-
T ss_conf 454774355013212-0477447644799888865622-5620125777786--5365579854550367646431599-
Q ss_pred CCCCCC-CCCCCC-----CHHHCCHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCCEEEECCEECCCCCCCCCCCCCHH
Q ss_conf 777613-378998-----84254899999986152551577789874999115876526167811124887751435799
Q gi|254780306|r 682 KDAKRC-SLPKTW-----KSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLTIDLE 755 (837)
Q Consensus 682 ~kpkr~-si~k~~-----~~~~itle~Al~LLsLPr~lG~~pe~g~~I~~~~GryGpYi~~~~~~~sl~~~~~~~~I~l~ 755 (837)
T Consensus 739 ~~Ck~trk~~~~g~~~pp~~~pi~~~~----------l-~c~k~~~~~vlr~~~~g~fla~s~-fpk~retr~p~v~e~~ 806 (869)
T PRK09001 739 EECKNTRKILKNGEVAPPKEDPVPLPE----------L-KCEKSDAYFVLRDGAAGIFLAAST-FPKSRETRAPLVEELV 806 (869)
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCC----------C-CCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCHHHHHH
T ss_conf 778567777417994999889978876----------6-566459846865255551000167-9865454783189989
Q ss_pred HHHHHHHHH
Q ss_conf 999999836
Q gi|254780306|r 756 QAISCITEK 764 (837)
Q Consensus 756 ~Aieli~~~ 764 (837)
T Consensus 807 ~~~~~~~~k 815 (869)
T PRK09001 807 RFRDRLPEK 815 (869)
T ss_pred HHHHHCCHH
T ss_conf 887646888