HHsearch alignment for GI: 254780306 and conserved domain: PRK09138
>PRK09138 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=2202.08 Aligned_cols=833 Identities=58% Similarity=0.993 Sum_probs=806.1
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 91899779047877887508998999942511007865578676667440688776548999999999870998999469
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATD 80 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD 80 (837)
T Consensus 1 M~LvIVESPaKaktI~kyLG~~y~V~AS~GHirDLp~k~~~vd~~~~f~~~y~i~~~k~k~v~~lk~~~K~ad~v~LATD 80 (887)
T PRK09138 1 MNVVVVESPAKAKTINKYLGSDYKVLASFGHVRDLPAKDGSVDPDEDFAMSWEVDSKSAKRLKDIAKALKGADGLILATD 80 (887)
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEEEECCCCHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 95899947388889998559898899616704318865585566888646789898657999999999837998998889
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHC
Q ss_conf 97025799999999975512578871699998037989999998622646989999999999989874011378988641
Q gi|254780306|r 81 PDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKL 160 (837)
Q Consensus 81 ~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~ 160 (837)
T Consensus 81 pDREGEaIawhl~e~L~~k~~l~~~~vkRi~F~EITk~AI~~Al~npr~id~~LV~Aq~aRRilDrLvGf~lSp~Lwrkl 160 (887)
T PRK09138 81 PDREGEAISWHVLEVLRKKKALKDKPVERVVFNAITKSAVTDAMANPRDIDQPLVDAYLARRALDYLVGFTLSPVLWRKL 160 (887)
T ss_pred CCCCHHHHHHHHHHHHCHHCCCCCCCEEEEEEECCCHHHHHHHHHCHHHCCHHHHHHHHHHHHHHEEECCEECHHHHHHC
T ss_conf 98341899999999856110478885368999365999999999591521888899999999987133613169999744
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCCC
Q ss_conf 46765342268999999999999641376544001223315799654223310358330331011356667776420015
Q gi|254780306|r 161 PGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKA 240 (837)
Q Consensus 161 ~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 240 (837)
T Consensus 161 ~~~~SAGRVQSpaLrLIveRE~EI~~F~p~~Yw~i~a~~~~~~g~~f~a~l~~~~gkk~~k~~i~~~~eA~~~~~~l~~~ 240 (887)
T PRK09138 161 PGARSAGRVQSVALRLVCDREAEIERFVPREYWSVAALLATPRGDEFEARLTGLDGKKLDKLDIGNGEEAEAAKAALEAA 240 (887)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEECCEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 78987651077889999984999985165436999999965889735799986267011546677889999999986069
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 63010000233222468521037999998876088899999999876213556721224553147554444305689999
Q gi|254780306|r 241 TYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVR 320 (837)
Q Consensus 241 ~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r 320 (837)
T Consensus 241 ~~~V~~ve~K~~kr~Pp~PFtTSTLQQeAs~kLGfSa~~TM~iAQ~LYEg~~~~~~~~GlITYmRTDS~~lS~eai~~ar 320 (887)
T PRK09138 241 TFKVASVEAKPAKRNPPPPFTTSTLQQEASRKLGFSASRTMQIAQRLYEGVDIGGETVGLITYMRTDGVQMAPEAITAAR 320 (887)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 75999983342245899996467999999987199899999999999751235777505898614762201899999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEE
Q ss_conf 76552001123763111125566688777652477302346400000199999999999999999985222110010013
Q gi|254780306|r 321 RSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVN 400 (837)
Q Consensus 321 ~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~ 400 (837)
T Consensus 321 ~~I~~~yG~~ylp~~pr~y~~K~knaQEAHEAIRPTd~~~~P~~~~~~L~~de~kLY~LIwkRtlASQM~~A~~e~ttv~ 400 (887)
T PRK09138 321 DAIGERFGAAYVPEKPRFYSTKAKNAQEAHEAIRPTDFSRRPADVRRFLDADQARLYELIWKRTIASQMESAELERTTVD 400 (887)
T ss_pred HHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEE
T ss_conf 99998636332753230102345567667577236565558788740289889999999999999974464233789999
Q ss_pred EEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 67740796399999874880588567632677763210010148864568821100110111234643101789987433
Q gi|254780306|r 401 IIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM 480 (837)
Q Consensus 401 i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~m 480 (837)
T Consensus 401 i~~~~~~~~~~f~AsG~vi~f~Gfl~vY~e~~d~~~~de~~~~LP~l~~Gd~l~~~~i~~~q~~TkPP~RYTEASLVk~m 480 (887)
T PRK09138 401 IEAKDGGRQAGLRATGQVVKFDGFLAVYQEGRDDDDDDEDSRRLPAMSEGEALAREKVAATQHFTEPPPRYSEASLVKRM 480 (887)
T ss_pred EEECCCCCEEEEEEEEEEEEECCEEEEECCCCCCCCCCCHHHCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 99468871589999768997678188650456664321011028765568765676777567765899988989999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 21025665515789999973220221477122201142000022336655689889999999999986260134789999
Q gi|254780306|r 481 EEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHE 560 (837)
Q Consensus 481 E~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~ 560 (837)
T Consensus 481 Ee~GIGRPSTYAsII~tL~~R~YV~~~~~~l~Pt~~G~~V~~fL~~~F~~~vdy~FTA~mE~~LD~Ia~G~~~w~~~l~~ 560 (887)
T PRK09138 481 EELGIGRPSTYASILQTLRDREYVRIDKRRLIPEDKGRLVTAFLESFFERYVEYDFTADLEEKLDRISDGELDWKQVLRD 560 (887)
T ss_pred HHCCCCCCCHHHHHHHHHHHCCCEEEECCEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 97699986317999998871787983098766407589999999986355409175899999888987687428999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86767665576677556667765567664102455556766114334677731368715776111234343233321001
Q gi|254780306|r 561 FWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLT 640 (837)
Q Consensus 561 Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~ 640 (837)
T Consensus 561 Fy~~f~~~v~~~~~~~~~~v~~~l~~~l~~~~f~~~~d~~d~r~cp~c~~g~l~l~~-gk~G~figcsnypec~~t~~l~ 639 (887)
T PRK09138 561 FWRDFSAAVDETKELRVTEVLDALDEELAPHIFPPREDGSDPRICPTCGTGRLSLKL-GKFGAFVGCSNYPECRYTRQLS 639 (887)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 976333444112111167787777765443216754467776336678887368870-5765666567886443555578
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECC----CCCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCC
Q ss_conf 22100-00123442014689999669998269742277348----87776133789988425489999998615255157
Q gi|254780306|r 641 SNPQD-IPEMKESVLLGNDLETKESVTLRSGRFGLYVQRGD----GKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGI 715 (837)
Q Consensus 641 ~~~~~-~~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq~Ge----~~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~ 715 (837)
T Consensus 640 ~~~~~~~~~~~~~r~LG~dP~tg~~v~~k~GrfGpyvq~G~~~~~~~kpk~asl~k~~~~~~itle~Al~LlsLPr~lG~ 719 (887)
T PRK09138 640 ADGGEEAAASDDPKVLGKDPETGEEVTLRSGRFGPYVQLGEATAEGKKPKRASLPKGWSPADVDLEKALALLSLPREVGK 719 (887)
T ss_pred CCCCCCHHCCCCCCEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCC
T ss_conf 87542011245783320079999758997047777586168764445754467889998010689999999817485389
Q ss_pred CCCCCCEEEEEECCCCCEEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEE
Q ss_conf 77898749991158765261678111248877514357999999998365113443445443201026789898469960
Q gi|254780306|r 716 HPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPEGGSITVHN 795 (837)
Q Consensus 716 ~pe~g~~I~~~~GryGpYi~~~~~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~~~~i~i~~ 795 (837)
T Consensus 720 hpe~g~~I~a~~GrfGPYv~~~~~~~sl~~~~~~~~i~l~~A~~lia~~~~~~~~-~~~~~~~lk~lg~~p~~~~v~v~~ 798 (887)
T PRK09138 720 HPETGKPISAGIGRYGPYVKHGGTYANLEKVDDVFTIGLNRAVTLLAEKQAGGGR-GRGAAAPLKTLGDHPDGGPVTVRD 798 (887)
T ss_pred CCCCCCEEEECCCCCCCCEEECCEEECCCCCCCCEEECHHHHHHHHHHHHHCCCC-CCCCCCHHHHCCCCCCCCEEEEEC
T ss_conf 9789978998158876648889998268998986251699999999612103555-545443022237799998258845
Q ss_pred CCCCCEEEECCEEEECCCCCCHHHCCHHHHHHHHHHHHHC
Q ss_conf 6854525367888756578896778999999999877726
Q gi|254780306|r 796 GRYGPYLHWKKINASLSKEESPDTVDLEKALKILNIKKQK 835 (837)
Q Consensus 796 GryGpYi~~gk~Na~ipk~~~~e~lt~e~a~~li~~k~~k 835 (837)
T Consensus 799 Gr~GpYv~~g~~Na~lpk~~~~e~~tle~a~~ll~~k~ak 838 (887)
T PRK09138 799 GRYGPYVNWGKVNATLPKGKDPEAVTLEEALALIAEKAAK 838 (887)
T ss_pred CCCCCEEEECCEEEECCCCCCHHHCCHHHHHHHHHHHHHC
T ss_conf 8876507638478625899982128899999999987622