HHsearch alignment for GI: 254780306 and conserved domain: pfam01131
>pfam01131 Topoisom_bac DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.
Probab=100.00 E-value=0 Score=856.11 Aligned_cols=397 Identities=42% Similarity=0.605 Sum_probs=355.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 6989999999999989874011378988641-467653422689999999999996413765440012233157996542
Q gi|254780306|r 130 INLDLVNAYLARRALDYLVGFNLSPILWQKL-PGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFT 208 (837)
Q Consensus 130 ~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~-~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~ 208 (837)
T Consensus 2 ~d~nL~~A~~aR~~~D~lvG~n~Sr~~t~~~~~~~lS~GRVQtPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~-~~ 80 (403)
T pfam01131 2 EDENLVDAQEARRILDRLIGFNLSRALTLKGNKKVLSAGRVQTPTLGLIVEREKEIKNFVPEPYWTVEATLGKDEFA-AG 80 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC-CC
T ss_conf 88789999999999999972765499997248999753633889999999999999839995439999999768751-00
Q ss_pred EEEEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 23310358330331011356667776420015630100002332224685210379999988760888999999998762
Q gi|254780306|r 209 AHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLY 288 (837)
Q Consensus 209 a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LY 288 (837)
T Consensus 81 ~---------~~~~~~~~~~~a~~~~~~~~~~~~~v~~v~~~~~~~~pP~pf~ls~Lq~~a~~~~g~s~~~tm~iaQ~LY 151 (403)
T pfam01131 81 K---------DEEGRFFDKEEAEAIVEKIKGKTATVKSVEKKEKKEPPPLPFNTSTLQKEASRKLGFSAKKTMDIAQKLY 151 (403)
T ss_pred C---------CCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 2---------3347769999999999986489859999876577506999857799999998753878999999999988
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CC-CCCCCEEEEECCCCCCHH
Q ss_conf 135567212245531475544443056-899997655200112376311112556668-87-776524773023464000
Q gi|254780306|r 289 EGIDVNGEIVGLITYMRTDGVHMSPDA-LEAVRRSITSHYGDHYLPEKPRIYSSKSKN-AQ-EAHEAIRPNDFDFLPSKM 365 (837)
Q Consensus 289 E~~~~~~~~~GlITYpRTDS~~ls~ea-~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~-aQ-eAHeAIrPT~~~~~p~~~ 365 (837)
T Consensus 152 E--------~glITYpRTDs~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~aH~AI~PT~~~--~~-- 219 (403)
T pfam01131 152 E--------KGLITYPRTDSTYLSEDAELAAILEYLAKRFGEEYLPYAPKLVKPKSPGNAKVGAHEAIRPTGPI--PR-- 219 (403)
T ss_pred H--------CCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CC--
T ss_conf 6--------58345347676527825579999999984113533233000024777665556788752036777--75--
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCC
Q ss_conf 00199999999999999999985222110010013677407963999998748805885676326777632100101488
Q gi|254780306|r 366 KQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLP 445 (837)
Q Consensus 366 ~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP 445 (837)
T Consensus 220 ~~~ls~~e~~iY~LI~~r~las~~~~a~~~~~~v~~~~~~----~~F~~~g~~~~~~Gw~~v~~~~~------~~~~~~p 289 (403)
T pfam01131 220 LPELSDDERKLYDLIVRRFLASQMPPAVYEETKVELEVGG----EEFKASGKVLLEPGWKKVYPYSK------DEDEEPP 289 (403)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECC----EEEEEEEEEECCCCHHHHHCCCC------CCCCCCC
T ss_conf 2329999999999999999998385224778999999899----79999989972576787616775------4444486
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCC-CCEEECCHHHHHCCCC
Q ss_conf 645688211001101112346431017899874332102566551578999997322022147-7122201142000022
Q gi|254780306|r 446 YISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEK-RKILPQNTGRIVTAFL 524 (837)
Q Consensus 446 ~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~-~~l~pT~~G~~v~~~L 524 (837)
T Consensus 290 ~~~~g~~~~~~~~~~~~~~T~PP~ryTe~sLi~~Me~~GIGtpATra~iI~~L~~R~Yi~~~k~k~l~pT~~G~~li~~l 369 (403)
T pfam01131 290 ELKEGEELTVQKVELEEKKTKPPPRYTEASLIKAMEKRGIGTPATRASIIETLLERGYVERKKNKRLVPTDLGRALIDAL 369 (403)
T ss_pred CCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEECHHHHHHHHHH
T ss_conf 41368679875778764204798765899999999857999602389999999858949974897780537899999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 33665568988999999999998626013478999
Q gi|254780306|r 525 ENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLH 559 (837)
Q Consensus 525 ~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~ 559 (837)
T Consensus 370 ~-~~~~l~~~~~Ta~~E~~Ld~I~~G~~~~~~~l~ 403 (403)
T pfam01131 370 P-RFPDLVSPELTARLEETLDEIARGEKDYEDVLD 403 (403)
T ss_pred H-CCCHHCCHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 4-413106977899999999999869998888259