HHsearch alignment for GI: 254780306 and conserved domain: smart00437

>smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain. Bacterial DNA topoisomerase I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase alpha subunit

Probab=92.99  E-value=0.34  Score=28.03  Aligned_cols=93  Identities=23%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCEEEEEEEEE--CCEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             999999999999641376-5440012233157996542233103--5833-03310113566677764200156301000
Q gi|254780306|r  172 VALRLICNRENQIESFVS-EEYWSLSVLLETPRNDKFTAHLTDF--NGQR-IEKKSISNKKEADDLISFVKKATYSVEKI  247 (837)
Q Consensus       172 p~L~lIveRe~eI~~F~p-~~y~~i~a~~~~~~~~~f~a~l~~~--~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~V~~v  247 (837)
T Consensus       123 ~lY~LI~~r~la--s~~~~~~~~~t~v~~~~-~~~~F~~~g~~~~~~Gw~~v~~--~~~~~~~~~lp~l~~g~~~~~~~~  197 (259)
T smart00437      123 KLYELIWRRFLA--SQMPDAKYEETKVIIKI-GGEKFKAKGKTLLFDGWLKVYP--EEKKEEEIELPTLKKGDELKVEEV  197 (259)
T ss_pred             HHHHHHHHHHHH--HHCCHHEEEEEEEEEEE-CCEEEEEEEEEEEECCHHHEEC--CCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             999999999999--85753327899999998-9989999999998687374033--565653132876777988999888


Q ss_pred             ECCCCCCCCCCCCCHHHHHHHH
Q ss_conf             0233222468521037999998
Q gi|254780306|r  248 ENKPIKRNPWPAFTTSTLQQVA  269 (837)
Q Consensus       248 ~~k~~~~~Pp~Pf~tstLQq~A  269 (837)
T Consensus       198 ~~~~~~TkPP~~yte~tLi~~M  219 (259)
T smart00437      198 EVEEKKTKPPARYTEASLIKLM  219 (259)
T ss_pred             EEEEEECCCCCCCCHHHHHHHH
T ss_conf             8765433899887999999987