HHsearch alignment for GI: 254780306 and conserved domain: smart00493
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=99.43 E-value=7e-13 Score=115.74 Aligned_cols=74 Identities=38% Similarity=0.561 Sum_probs=66.3
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 91899779047877887508998999942511007865578676667440688776548999999999870998999469
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATD 80 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD 80 (837)
T Consensus 1 ~~liIVEg~~d~~~i~~~~~~~~~~~~~~G~~~------------------------~~~~i~~l~~~~~~-~eViiatD 55 (76)
T smart00493 1 KVLIIVEGPADAIALEKAGGFGGNVVALGGHLL------------------------KKEIIKLLKRLAKK-KEVILATD 55 (76)
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCC------------------------CHHHHHHHHHHHCC-CEEEEECC
T ss_conf 979998788899999985699979998215235------------------------04489999986338-97999769
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 9702579999999997551
Q gi|254780306|r 81 PDREGEAISWHVLDVLRQK 99 (837)
Q Consensus 81 ~DREGE~Iawhi~e~l~~~ 99 (837)
T Consensus 56 ~D~eGe~~a~~i~~~l~~~ 74 (76)
T smart00493 56 PDREGEAIAWKLAELLKPA 74 (76)
T ss_pred CCCCHHHHHHHHHHHHHHC
T ss_conf 8944699999999987762