PSIBLAST alignment of GI: 254780306 and protein with PDB id: 1cy1
>gi|7245299|pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt Length = 599
>gi|7245300|pdb|1CY2|A Chain A, Complex Of E.Coli Dna Topoisomerase I With Tptptp3' Length = 599
>gi|7245301|pdb|1CY6|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3' Thymidine Monophosphate Length = 599
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 242/605 (40%), Positives = 349/605 (57%), Gaps = 54/605 (8%)
Query: 3 VIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK------------------------ 38
++IVESPAKAKTI+KYLGS+Y V SS GHIRDLP
Sbjct: 7 LVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDER 66
Query: 39 -----KGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVL 93
+ V P +E + + P +K + + + + + LATD DREGEAI+WH+
Sbjct: 67 GALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR 126
Query: 94 DVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLS 153
+V+ + + RV FN ITK + A P ++N+D VNA ARR +D +VG+ +S
Sbjct: 127 EVIG----GDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS 182
Query: 154 PILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTD 213
P+LW+K+ SAGRVQSVA+RL+ RE +I++FV EE+W + TP + +T
Sbjct: 183 PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH 242
Query: 214 FNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRL 273
N + NK++ +S ++KA YSV + E+KP P F TSTLQQ AS+RL
Sbjct: 243 QNDKPFRP---VNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRL 299
Query: 274 GFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLP 333
GF TM +AQ+LYE G ITYMRTD ++S DA+ VR I+ ++G YLP
Sbjct: 300 GFGVKKTMMMAQRLYE--------AGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP 351
Query: 334 EKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAK 393
E P Y+SK N+QEAHEAIRP+D + + +K +++D +LY LIW++ VA QM AK
Sbjct: 352 ESPNQYASKE-NSQEAHEAIRPSDVNVMAESLK-DMEADAQKLYQLIWRQFVACQMTPAK 409
Query: 394 FERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQL 453
++ TT+ + A L+ G +L FDG+ KV +ED +LP ++ + L
Sbjct: 410 YDSTTLTVGA----GDFRLKARGRILRFDGWTKVMPALRK----GDEDRILPAVNKGDAL 461
Query: 454 IATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILP 513
E +QHFT+PP R+SE+SL+K++E+ GIGRPSTYA+I+ T+ R YV E R+
Sbjct: 462 TLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYA 521
Query: 514 QNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIK 573
+ G IVT LE F + + YDFTA +E LD+++ + WK VL F+ +F +++D +
Sbjct: 522 EKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAE 581
Query: 574 KLRIS 578
K
Sbjct: 582 KDPEE 586