PSIBLAST alignment of GI: 254780306 and protein with PDB id: 1cy1

>gi|7245299|pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt Length = 599
>gi|7245300|pdb|1CY2|A Chain A, Complex Of E.Coli Dna Topoisomerase I With Tptptp3' Length = 599
>gi|7245301|pdb|1CY6|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3' Thymidine Monophosphate Length = 599
 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 242/605 (40%), Positives = 349/605 (57%), Gaps = 54/605 (8%)

Query: 3   VIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK------------------------ 38
           ++IVESPAKAKTI+KYLGS+Y V SS GHIRDLP                          
Sbjct: 7   LVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDER 66

Query: 39  -----KGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVL 93
                +  V P   +E  + + P  +K +  +    + +  + LATD DREGEAI+WH+ 
Sbjct: 67  GALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR 126

Query: 94  DVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLS 153
           +V+      +  +  RV FN ITK  +  A   P ++N+D VNA  ARR +D +VG+ +S
Sbjct: 127 EVIG----GDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS 182

Query: 154 PILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTD 213
           P+LW+K+    SAGRVQSVA+RL+  RE +I++FV EE+W +     TP  +     +T 
Sbjct: 183 PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH 242

Query: 214 FNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRL 273
            N +        NK++    +S ++KA YSV + E+KP    P   F TSTLQQ AS+RL
Sbjct: 243 QNDKPFRP---VNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRL 299

Query: 274 GFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLP 333
           GF    TM +AQ+LYE         G ITYMRTD  ++S DA+  VR  I+ ++G  YLP
Sbjct: 300 GFGVKKTMMMAQRLYE--------AGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP 351

Query: 334 EKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAK 393
           E P  Y+SK  N+QEAHEAIRP+D + +   +K  +++D  +LY LIW++ VA QM  AK
Sbjct: 352 ESPNQYASKE-NSQEAHEAIRPSDVNVMAESLK-DMEADAQKLYQLIWRQFVACQMTPAK 409

Query: 394 FERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQL 453
           ++ TT+ + A        L+  G +L FDG+ KV           +ED +LP ++  + L
Sbjct: 410 YDSTTLTVGA----GDFRLKARGRILRFDGWTKVMPALRK----GDEDRILPAVNKGDAL 461

Query: 454 IATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILP 513
              E   +QHFT+PP R+SE+SL+K++E+ GIGRPSTYA+I+ T+  R YV  E R+   
Sbjct: 462 TLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYA 521

Query: 514 QNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIK 573
           +  G IVT  LE  F + + YDFTA +E  LD+++  +  WK VL  F+ +F +++D  +
Sbjct: 522 EKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAE 581

Query: 574 KLRIS 578
           K    
Sbjct: 582 KDPEE 586